AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390790 MtrunA17_Chr2g0330151 97.217 575 13 1 1 572 1 575 0.0 1158
Msa0390790 MtrunA17_Chr8g0342491 77.739 575 120 4 3 572 4 575 0.0 930
Msa0390790 MtrunA17_Chr1g0178391 55.935 556 231 8 23 572 21 568 0.0 627
Msa0390790 MtrunA17_Chr7g0266641 55.676 555 234 7 23 571 25 573 0.0 619
Msa0390790 MtrunA17_Chr1g0151241 54.494 534 233 5 44 571 42 571 0.0 601
Msa0390790 MtrunA17_Chr1g0151301 52.941 544 246 5 34 571 6 545 0.0 594
Msa0390790 MtrunA17_Chr1g0151321 49.180 549 264 9 33 571 5 548 0.0 545
Msa0390790 MtrunA17_Chr5g0427521 62.670 367 123 7 62 416 11 375 5.43e-166 477
Msa0390790 MtrunA17_Chr4g0056501 47.556 532 262 9 48 571 112 634 3.92e-159 469
Msa0390790 MtrunA17_Chr3g0079291 45.558 529 274 8 48 571 104 623 1.83e-153 454
Msa0390790 MtrunA17_Chr5g0427511 69.006 171 50 3 405 572 20 190 1.68e-76 240
Msa0390790 MtrunA17_Chr1g0151281 54.774 199 84 3 74 270 76 270 5.28e-70 226
Msa0390790 MtrunA17_Chr1g0151271 47.805 205 106 1 367 570 1 205 1.57e-59 197
Msa0390790 MtrunA17_Chr1g0151251 37.838 74 45 1 278 351 34 106 1.11e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390790 AT3G13790.2 64.779 565 187 7 17 572 20 581 0.0 752
Msa0390790 AT3G13790.1 64.437 568 187 8 17 572 20 584 0.0 746
Msa0390790 AT3G13790.5 65.571 517 167 6 64 572 1 514 0.0 691
Msa0390790 AT3G13790.4 65.571 517 167 6 64 572 1 514 0.0 691
Msa0390790 AT3G13790.3 65.571 517 167 6 64 572 1 514 0.0 691
Msa0390790 AT1G55120.1 57.560 582 220 8 4 572 7 574 0.0 681
Msa0390790 AT1G55120.4 59.579 522 199 6 61 572 15 534 0.0 644
Msa0390790 AT1G55120.2 59.501 521 199 6 62 572 17 535 0.0 642
Msa0390790 AT1G55120.3 59.273 523 201 6 60 572 39 559 0.0 642
Msa0390790 AT3G13784.1 55.208 576 233 10 3 569 9 568 0.0 641
Msa0390790 AT3G13784.4 54.922 579 233 11 3 569 9 571 0.0 635
Msa0390790 AT3G13784.2 54.922 579 233 11 3 569 9 571 0.0 635
Msa0390790 AT3G13784.3 57.529 518 206 8 61 569 6 518 0.0 608
Msa0390790 AT3G52600.1 53.195 579 249 8 6 568 9 581 0.0 593
Msa0390790 AT2G36190.1 53.559 562 239 8 23 568 27 582 0.0 584
Msa0390790 AT3G52600.3 55.086 521 218 6 61 568 10 527 0.0 563
Msa0390790 AT3G52600.2 55.019 518 217 6 64 568 1 515 0.0 558
Msa0390790 AT5G11920.1 49.159 535 256 9 48 572 17 545 1.83e-174 505
Msa0390790 AT5G11920.3 49.031 516 250 8 64 572 1 510 7.16e-166 482
Msa0390790 AT1G62660.1 47.388 536 265 11 48 572 106 635 4.04e-157 464
Msa0390790 AT1G12240.1 44.732 541 273 11 48 572 121 651 2.81e-151 450
Msa0390790 AT1G62660.2 46.923 520 262 10 61 572 24 537 1.28e-150 444
Msa0390790 AT1G62660.4 45.455 473 244 10 108 572 3 469 3.63e-127 382
Msa0390790 AT1G62660.3 45.455 473 244 10 108 572 3 469 3.63e-127 382
Msa0390790 AT5G11920.2 50.667 375 170 8 48 413 17 385 6.74e-123 369

Find 144 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCTTCTCTCTCATTTA+TGG 0.118372 3_2:-1879384 Msa0390790:CDS
AAATAAATGCAAGTTCATTT+AGG 0.163015 3_2:-1878224 Msa0390790:CDS
TCATTTGAAGTGAAAGATTT+TGG 0.181984 3_2:-1876931 Msa0390790:CDS
AAGAGAGTTAGCAATAAAAT+TGG 0.204427 3_2:+1879399 None:intergenic
TTGTTATATGCTTTCAATAA+TGG 0.210493 3_2:-1875999 Msa0390790:CDS
CAGATATCAACATAAGAATT+TGG 0.218589 3_2:-1876758 Msa0390790:CDS
AATTAGTATCACTACTTCTT+AGG 0.265234 3_2:+1875911 None:intergenic
CAATCCAAAAGGTGCTGTTT+GGG 0.272533 3_2:-1878526 Msa0390790:CDS
ACTGAATTAACACCAGTAAT+TGG 0.279878 3_2:+1877213 None:intergenic
GGGTATTGGAGGGTATTAAT+TGG 0.290155 3_2:-1878171 Msa0390790:CDS
ACCTTGGTTGGCCAATTGAC+TGG 0.299819 3_2:+1877258 None:intergenic
AATAAATGCAAGTTCATTTA+GGG 0.302444 3_2:-1878223 Msa0390790:CDS
AAACATGATCACTATTTGAT+TGG 0.304462 3_2:-1877925 Msa0390790:CDS
CATTCAGTGGTGGAGAGTTT+TGG 0.312021 3_2:-1876086 Msa0390790:CDS
ACATGTGCTTAAGGTTAGTT+TGG 0.312368 3_2:-1877956 Msa0390790:CDS
TTAGGGACCCAACAACTTCT+TGG 0.314057 3_2:-1878206 Msa0390790:CDS
AGACTATTCCAAGGGCTATC+TGG 0.320133 3_2:-1877347 Msa0390790:CDS
AGCTGAATGTAAAGGATGTT+TGG 0.327426 3_2:+1878080 None:intergenic
TTTCCCCAAACAGCACCTTT+TGG 0.327751 3_2:+1878522 None:intergenic
GGTGAATTGATTCCAATTAC+TGG 0.339584 3_2:-1877225 Msa0390790:CDS
CAAAAGGGTGCATCAGTAAA+AGG 0.341096 3_2:-1876859 Msa0390790:CDS
ACAATCCAAAAGGTGCTGTT+TGG 0.345736 3_2:-1878527 Msa0390790:CDS
TCTCAACCGTCAGATATAAA+AGG 0.347684 3_2:-1878429 Msa0390790:CDS
TGCTTATTATTGTTCACAAA+AGG 0.349820 3_2:+1875770 None:intergenic
GTATCAAGACCAATGGTTAA+TGG 0.350255 3_2:+1878003 None:intergenic
GCTATCTGGCTTCATAAATC+AGG 0.355554 3_2:-1877333 Msa0390790:CDS
TATCCATTTGTCCAATAATT+CGG 0.361523 3_2:+1876903 None:intergenic
GAGAATGATATGACCACATA+TGG 0.363306 3_2:-1876601 Msa0390790:CDS
AATGGATTCTTATTTAATAC+AGG 0.363548 3_2:+1878021 None:intergenic
AAGTGATAGGCAGTTCTATA+AGG 0.365296 3_2:+1879276 None:intergenic
TTGATGATGGGAAGAATAGA+AGG 0.368169 3_2:-1877795 Msa0390790:CDS
ACTTCCAACCTCTCAAGAAT+TGG 0.373141 3_2:-1879257 Msa0390790:CDS
ATTCCAGTGTACAAAATTGC+TGG 0.375276 3_2:+1878366 None:intergenic
TTCCTAGCCAAGAAGTTGTT+GGG 0.375289 3_2:+1878199 None:intergenic
GGCTCAGCAACAATACTTCC+AGG 0.375946 3_2:-1878396 Msa0390790:CDS
AAAGGTGGTGTTGGACCATT+TGG 0.375969 3_2:-1876841 Msa0390790:CDS
TATCAAAGGATCTTGTGAAT+TGG 0.395856 3_2:-1878479 Msa0390790:CDS
GTGGTTTAATTGAATGAAGT+TGG 0.403508 3_2:+1879435 None:intergenic
CTGCACGTGCTTGCTTCTAA+AGG 0.407854 3_2:-1876817 Msa0390790:CDS
TGGAAGCAAAATACATAGAA+AGG 0.411550 3_2:-1878151 Msa0390790:CDS
CAAGATCCTTTGATACTGAA+TGG 0.413406 3_2:+1878487 None:intergenic
AGTAGTGATACTAATTAAAC+AGG 0.415338 3_2:-1875904 Msa0390790:three_prime_UTR
GATATAAAAGGTTGTTGGTC+AGG 0.418374 3_2:-1878417 Msa0390790:CDS
AACATGGTGGGTAGCTTCAA+TGG 0.424077 3_2:+1879347 None:intergenic
TTACATTCAGCTGAAGGAAC+AGG 0.425951 3_2:-1878069 Msa0390790:CDS
CCTCCCTTGATCACCTTGGT+TGG 0.427224 3_2:+1877246 None:intergenic
CCTTGGTTGGCCAATTGACT+GGG 0.427404 3_2:+1877259 None:intergenic
AGGCCGAATTATTGGACAAA+TGG 0.428825 3_2:-1876906 Msa0390790:CDS
AACATGATCACTATTTGATT+GGG 0.429903 3_2:-1877924 Msa0390790:CDS
GCAACAGTAGGTTCCATCAA+TGG 0.434493 3_2:+1878252 None:intergenic
TAGAAGGATCTTGTTGGGTT+GGG 0.438565 3_2:-1877779 Msa0390790:CDS
CTTGAGAGGTTGGAAGTGAT+AGG 0.439207 3_2:+1879263 None:intergenic
TTTGTAGGACCAATGAGATA+TGG 0.447970 3_2:-1878576 Msa0390790:intron
AGATCACAAGATTGAATGCT+TGG 0.449911 3_2:-1875962 Msa0390790:CDS
AAGAATAGAAGGATCTTGTT+GGG 0.450720 3_2:-1877784 Msa0390790:CDS
ACTTCTTGGCTAGGAAAAGA+TGG 0.450839 3_2:-1878192 Msa0390790:CDS
TACATTAGCAATCCATGATA+AGG 0.451158 3_2:-1876024 Msa0390790:CDS
GGCTAGGAAAAGATGGGTAT+TGG 0.451915 3_2:-1878185 Msa0390790:CDS
TACGTATGAACCCAGTCAAT+TGG 0.452564 3_2:-1877269 Msa0390790:CDS
GAAGAATAGAAGGATCTTGT+TGG 0.453865 3_2:-1877785 Msa0390790:CDS
AAAATTGCTGGTTTGCCACC+TGG 0.460562 3_2:+1878378 None:intergenic
AATGTGTTGAGATATGATTA+TGG 0.466520 3_2:-1877844 Msa0390790:CDS
TGATGTTAAACATGTGCTTA+AGG 0.467725 3_2:-1877965 Msa0390790:CDS
TTATCCTCAAATCCATTATC+CGG 0.468101 3_2:+1877871 None:intergenic
TTTCCTAGCCAAGAAGTTGT+TGG 0.468993 3_2:+1878198 None:intergenic
GCTTATTATTGTTCACAAAA+GGG 0.469856 3_2:+1875771 None:intergenic
GATGTCAAGAAAGGATGGTC+TGG 0.472931 3_2:-1877730 Msa0390790:CDS
ATGTGTTGAGATATGATTAT+GGG 0.477790 3_2:-1877843 Msa0390790:CDS
TGGTTTAATTGAATGAAGTT+GGG 0.478880 3_2:+1879436 None:intergenic
TTGGCCAACCAAGGTGATCA+AGG 0.481677 3_2:-1877250 Msa0390790:CDS
TTTATATCTGACGGTTGAGA+TGG 0.484965 3_2:+1878432 None:intergenic
TGTTCCGGATAATGGATTTG+AGG 0.485113 3_2:-1877875 Msa0390790:CDS
CATATAACAAAGCCTTATCA+TGG 0.485853 3_2:+1876012 None:intergenic
CTGACCCATTACTTAGAGAA+TGG 0.488472 3_2:-1878293 Msa0390790:CDS
GAACAATAATAAGCATGGTC+AGG 0.490969 3_2:-1875762 Msa0390790:three_prime_UTR
TCTTGTGAATTGGACACCAT+TGG 0.493731 3_2:-1878469 Msa0390790:CDS
TTCACCTCCCTTGATCACCT+TGG 0.496200 3_2:+1877242 None:intergenic
AAGATGAACTCTCAAGAGTT+CGG 0.497881 3_2:+1879322 None:intergenic
ATAGAAGGATCTTGTTGGGT+TGG 0.498018 3_2:-1877780 Msa0390790:CDS
TGGGACTTATGATACTGTTA+AGG 0.500179 3_2:-1877905 Msa0390790:CDS
TGATCCAATTCTTGAGAGGT+TGG 0.501083 3_2:+1879253 None:intergenic
TTCTACCAATACAATCCAAA+AGG 0.504711 3_2:-1878537 Msa0390790:CDS
TTATGAAGCCAGATAGCCCT+TGG 0.506124 3_2:+1877339 None:intergenic
GCAAGCACGTGCAGACCAAA+TGG 0.509880 3_2:+1876826 None:intergenic
TTATATCTGACGGTTGAGAT+GGG 0.511411 3_2:+1878433 None:intergenic
CGTCAGATATAAAAGGTTGT+TGG 0.511481 3_2:-1878422 Msa0390790:CDS
ATAAGGTTGATCGTGATTTG+AGG 0.514989 3_2:+1879293 None:intergenic
TACTGGTGTTAATTCAGTAC+AGG 0.515915 3_2:-1877208 Msa0390790:intron
AATAAGAATCCATTAACCAT+TGG 0.517810 3_2:-1878012 Msa0390790:CDS
TAGGAAAAGATGGGTATTGG+AGG 0.517843 3_2:-1878182 Msa0390790:CDS
TCATGTGCAGCGATCAAAGC+AGG 0.519327 3_2:-1876732 Msa0390790:intron
ACATGGTGGGTAGCTTCAAT+GGG 0.520184 3_2:+1879348 None:intergenic
TAAAGTCCTCCATATCTCAT+TGG 0.522533 3_2:+1878567 None:intergenic
GAAGCTGTCACTAAGAACTT+TGG 0.524205 3_2:-1876548 Msa0390790:intron
GGAAGCAAAATACATAGAAA+GGG 0.524791 3_2:-1878150 Msa0390790:CDS
AAGATCCTTTGATACTGAAT+GGG 0.527419 3_2:+1878488 None:intergenic
CAAAACTCTCCACCACTGAA+TGG 0.531049 3_2:+1876087 None:intergenic
CAGGGAAACAGTTGGTGCAA+TGG 0.536764 3_2:-1877314 Msa0390790:CDS
GCATCAGTAAAAGGTGGTGT+TGG 0.545185 3_2:-1876850 Msa0390790:CDS
CTGTTTGGGGAAATATTGTG+TGG 0.551490 3_2:-1878512 Msa0390790:CDS
CAGCTGAAGGAACAGGAATG+TGG 0.551552 3_2:-1878062 Msa0390790:CDS
TATCTGACGGTTGAGATGGG+TGG 0.553345 3_2:+1878436 None:intergenic
TGAATTTGCAGACTATTCCA+AGG 0.553988 3_2:-1877356 Msa0390790:intron
GTTCCTTCAGCTGAATGTAA+AGG 0.562040 3_2:+1878072 None:intergenic
AGCTGAAGGAACAGGAATGT+GGG 0.562527 3_2:-1878061 Msa0390790:CDS
AGTGACAGCTTCTCATGAAG+TGG 0.562807 3_2:+1876559 None:intergenic
CATCCTTTACATTCAGCTGA+AGG 0.563353 3_2:-1878075 Msa0390790:CDS
TTATCATGGATTGCTAATGT+AGG 0.564154 3_2:+1876026 None:intergenic
GTTGTTGATGATGTCAAGAA+AGG 0.565288 3_2:-1877739 Msa0390790:CDS
CTATCTGGCTTCATAAATCA+GGG 0.565560 3_2:-1877332 Msa0390790:CDS
TTTGTGAACAATAATAAGCA+TGG 0.566089 3_2:-1875767 Msa0390790:three_prime_UTR
GTATACGTTAATGAAACTTG+AGG 0.567083 3_2:+1875849 None:intergenic
CCGTTGATCCAATTCTTGAG+AGG 0.568960 3_2:+1879249 None:intergenic
GGTCTTGATACATCTATGAA+TGG 0.571013 3_2:-1877991 Msa0390790:CDS
CTTCTTGGCTAGGAAAAGAT+GGG 0.573803 3_2:-1878191 Msa0390790:CDS
TCTCAAGAGTTCGGTAAACA+TGG 0.574499 3_2:+1879331 None:intergenic
AATTGGAGAGATAGCCATTG+TGG 0.581945 3_2:+1879416 None:intergenic
TTTAATTGAATGAAGTTGGG+TGG 0.587068 3_2:+1879439 None:intergenic
GACCCAACAACTTCTTGGCT+AGG 0.588645 3_2:-1878201 Msa0390790:CDS
GTGGGCCCATTCAGTATCAA+AGG 0.592486 3_2:-1878493 Msa0390790:CDS
ATCCACAAAAGTCCCATATG+TGG 0.593272 3_2:+1876588 None:intergenic
AGAATGATATGACCACATAT+GGG 0.594872 3_2:-1876600 Msa0390790:CDS
CAAGAGTTCGGTAAACATGG+TGG 0.598399 3_2:+1879334 None:intergenic
TTCATTCAATTAAACCACAA+TGG 0.602829 3_2:-1879430 Msa0390790:exon
CATAGATGTATCAAGACCAA+TGG 0.605287 3_2:+1877996 None:intergenic
CCCAGTCAATTGGCCAACCA+AGG 0.606107 3_2:-1877259 Msa0390790:CDS
TGGCCAACCAAGGTGATCAA+GGG 0.606547 3_2:-1877249 Msa0390790:CDS
TGTTTGGGGAAATATTGTGT+GGG 0.611046 3_2:-1878511 Msa0390790:CDS
GTGACAGCTTCTCATGAAGT+GGG 0.617462 3_2:+1876560 None:intergenic
AAGAGTTCGGTAAACATGGT+GGG 0.619926 3_2:+1879335 None:intergenic
GTAGGACCAATGAGATATGG+AGG 0.621441 3_2:-1878573 Msa0390790:intron
TCATAAATCAGGGAAACAGT+TGG 0.623557 3_2:-1877322 Msa0390790:CDS
GGGTGGATTGCATGATCCAA+TGG 0.626420 3_2:+1878453 None:intergenic
ACAGATTGACCATTCAGTGG+TGG 0.630975 3_2:-1876096 Msa0390790:intron
CCTCTCAAGAATTGGATCAA+CGG 0.632578 3_2:-1879249 Msa0390790:intron
TTGATGATGTCAAGAAAGGA+TGG 0.633579 3_2:-1877735 Msa0390790:CDS
AATCCAAAAGGTGCTGTTTG+GGG 0.637524 3_2:-1878525 Msa0390790:CDS
GAATTTGCAGACTATTCCAA+GGG 0.640212 3_2:-1877355 Msa0390790:intron
ATACTAATTAAACAGGAGAG+TGG 0.656392 3_2:-1875897 Msa0390790:three_prime_UTR
AGGAAAAGATGGGTATTGGA+GGG 0.661351 3_2:-1878181 Msa0390790:CDS
AAGGGTGCATCAGTAAAAGG+TGG 0.677299 3_2:-1876856 Msa0390790:CDS
CCAACCAAGGTGATCAAGGG+AGG 0.681398 3_2:-1877246 Msa0390790:CDS
TTGACAGATTGACCATTCAG+TGG 0.705722 3_2:-1876099 Msa0390790:intron
TCAGCAACAATACTTCCAGG+TGG 0.756866 3_2:-1878393 Msa0390790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTTTATTTTTTTTA+AGG + chr3_2:1877747-1877766 None:intergenic 0.0%
!! TAAAAAAAATAAAAAATAAT+TGG - chr3_2:1877747-1877766 Msa0390790:CDS 0.0%
!! AAAATTCACTTTAATATAAA+AGG + chr3_2:1876581-1876600 None:intergenic 10.0%
!!! GATATGATTTTTAATTTTTT+AGG - chr3_2:1877600-1877619 Msa0390790:intron 10.0%
!!! GTTTTAATTTTACTAATTTA+TGG - chr3_2:1878665-1878684 Msa0390790:intron 10.0%
!!! GATGTTTTGTTTTTTTTTTT+TGG - chr3_2:1876514-1876533 Msa0390790:intron 15.0%
!!! AAAGTAAAAATTTTGTTGAT+TGG - chr3_2:1877071-1877090 Msa0390790:intron 15.0%
!!! AAGTAAAAATTTTGTTGATT+GGG - chr3_2:1877072-1877091 Msa0390790:intron 15.0%
!! AATTATTGGTACATAATTTA+AGG + chr3_2:1878487-1878506 None:intergenic 15.0%
!!! TAACTTTGTTTTGAAATTAT+TGG + chr3_2:1878501-1878520 None:intergenic 15.0%
!!! ATATCTTTTAATACTTTGAT+AGG - chr3_2:1878542-1878561 Msa0390790:CDS 15.0%
!!! AAATAGTTTATTGATTTCTT+TGG - chr3_2:1878811-1878830 Msa0390790:intron 15.0%
!!! TATAGATAATGTTCTTTTAT+TGG - chr3_2:1879307-1879326 Msa0390790:CDS 15.0%
!! GAAAGTGGTATAAAAAAATT+GGG + chr3_2:1876171-1876190 None:intergenic 20.0%
!! TGAAAGTGGTATAAAAAAAT+TGG + chr3_2:1876172-1876191 None:intergenic 20.0%
!!! AGCATTGATATTTAACAAAT+GGG + chr3_2:1876198-1876217 None:intergenic 20.0%
!!! TAGCATTGATATTTAACAAA+TGG + chr3_2:1876199-1876218 None:intergenic 20.0%
!!! AAAATTTGTTAAATAGTCCA+GGG + chr3_2:1876417-1876436 None:intergenic 20.0%
!!! TAAAATTTGTTAAATAGTCC+AGG + chr3_2:1876418-1876437 None:intergenic 20.0%
!!! AAGTGAATTTTTGTTTTTGT+AGG - chr3_2:1876590-1876609 Msa0390790:CDS 20.0%
!!! TTTTGAACTTGATGATTATT+TGG + chr3_2:1876845-1876864 None:intergenic 20.0%
!! AAATAAATGCAAGTTCATTT+AGG - chr3_2:1876957-1876976 Msa0390790:intron 20.0%
!! AATAAATGCAAGTTCATTTA+GGG - chr3_2:1876958-1876977 Msa0390790:intron 20.0%
!! TTTAATACAGGAAAAAAATC+AGG + chr3_2:1877151-1877170 None:intergenic 20.0%
!!! AATGGATTCTTATTTAATAC+AGG + chr3_2:1877163-1877182 None:intergenic 20.0%
!!! TCTAAAACATTTTTTGATGA+TGG - chr3_2:1877373-1877392 Msa0390790:intron 20.0%
!!! CTAAAACATTTTTTGATGAT+GGG - chr3_2:1877374-1877393 Msa0390790:intron 20.0%
!!! ATAGTTTTTACATGTCAATA+TGG - chr3_2:1878004-1878023 Msa0390790:CDS 20.0%
!! AAATACAACCTATATAAGAA+AGG - chr3_2:1878153-1878172 Msa0390790:CDS 20.0%
!! AATACAACCTATATAAGAAA+GGG - chr3_2:1878154-1878173 Msa0390790:CDS 20.0%
!!! CATATAAAGTTAGCAAATTT+TGG + chr3_2:1878855-1878874 None:intergenic 20.0%
!!! CAAAATTTGCTAACTTTATA+TGG - chr3_2:1878853-1878872 Msa0390790:intron 20.0%
!!! AAATTTAAAACATGTGTCAT+CGG + chr3_2:1878940-1878959 None:intergenic 20.0%
!! TTGTTATATGCTTTCAATAA+TGG - chr3_2:1879182-1879201 Msa0390790:intron 20.0%
! TGGTTTAATTGAATGAAGTT+GGG + chr3_2:1875748-1875767 None:intergenic 25.0%
! TTCATTCAATTAAACCACAA+TGG - chr3_2:1875751-1875770 Msa0390790:three_prime_UTR 25.0%
! AAGAGAGTTAGCAATAAAAT+TGG + chr3_2:1875785-1875804 None:intergenic 25.0%
! GATTAAAATATTTAGCGCAA+GGG + chr3_2:1876002-1876021 None:intergenic 25.0%
! TGATTAAAATATTTAGCGCA+AGG + chr3_2:1876003-1876022 None:intergenic 25.0%
! TGTTTGTGTGTAAAATACAA+GGG + chr3_2:1876126-1876145 None:intergenic 25.0%
! GTTAAATATCAATGCTATAG+AGG - chr3_2:1876202-1876221 Msa0390790:intron 25.0%
! TTAAATTAATCAATAGTCCC+TGG - chr3_2:1876397-1876416 Msa0390790:intron 25.0%
!! TTTTCCATTCTCTAAGTAAT+GGG + chr3_2:1876895-1876914 None:intergenic 25.0%
!! TTTTTCCATTCTCTAAGTAA+TGG + chr3_2:1876896-1876915 None:intergenic 25.0%
!!! TTTATTTTGTTAGCAACAGT+AGG + chr3_2:1876944-1876963 None:intergenic 25.0%
! AATAAGAATCCATTAACCAT+TGG - chr3_2:1877169-1877188 Msa0390790:intron 25.0%
! AAACATGATCACTATTTGAT+TGG - chr3_2:1877256-1877275 Msa0390790:CDS 25.0%
! AACATGATCACTATTTGATT+GGG - chr3_2:1877257-1877276 Msa0390790:CDS 25.0%
! AATGTGTTGAGATATGATTA+TGG - chr3_2:1877337-1877356 Msa0390790:CDS 25.0%
! ATGTGTTGAGATATGATTAT+GGG - chr3_2:1877338-1877357 Msa0390790:CDS 25.0%
! AATTGTTATATACTAGTGCA+TGG - chr3_2:1877770-1877789 Msa0390790:CDS 25.0%
! TGATATTAACACGTCAATAT+TGG + chr3_2:1878051-1878070 None:intergenic 25.0%
!!! GTGTATTTTTTTTCTTCTAC+AGG - chr3_2:1878213-1878232 Msa0390790:CDS 25.0%
!!! TCATTTGAAGTGAAAGATTT+TGG - chr3_2:1878250-1878269 Msa0390790:CDS 25.0%
! TATCCATTTGTCCAATAATT+CGG + chr3_2:1878281-1878300 None:intergenic 25.0%
!!! TTTTGACTACACAAAATTTG+GGG + chr3_2:1878307-1878326 None:intergenic 25.0%
!!! CTTTTGACTACACAAAATTT+GGG + chr3_2:1878308-1878327 None:intergenic 25.0%
!! CAAATTTTGTGTAGTCAAAA+GGG - chr3_2:1878307-1878326 Msa0390790:CDS 25.0%
! CAGATATCAACATAAGAATT+TGG - chr3_2:1878423-1878442 Msa0390790:CDS 25.0%
! GGAATCATAAACACAATAAT+TGG - chr3_2:1878686-1878705 Msa0390790:intron 25.0%
!! ATGATTTTATCAATACTTCG+TGG + chr3_2:1878769-1878788 None:intergenic 25.0%
!!! TAAAGTTAGCAAATTTTGGT+GGG + chr3_2:1878851-1878870 None:intergenic 25.0%
!! ATAAAGTTAGCAAATTTTGG+TGG + chr3_2:1878852-1878871 None:intergenic 25.0%
! TAACTTTATATGGATGTAGA+TGG - chr3_2:1878863-1878882 Msa0390790:intron 25.0%
!! AATTTAAAACATGTGTCATC+GGG + chr3_2:1878939-1878958 None:intergenic 25.0%
! AGACAAAAATGACCAAATAT+AGG + chr3_2:1879030-1879049 None:intergenic 25.0%
!!! ATTTGGTCATTTTTGTCTTT+TGG - chr3_2:1879032-1879051 Msa0390790:intron 25.0%
! AATTAGTATCACTACTTCTT+AGG + chr3_2:1879273-1879292 None:intergenic 25.0%
! AGTAGTGATACTAATTAAAC+AGG - chr3_2:1879277-1879296 Msa0390790:CDS 25.0%
! GCTTATTATTGTTCACAAAA+GGG + chr3_2:1879413-1879432 None:intergenic 25.0%
! TGCTTATTATTGTTCACAAA+AGG + chr3_2:1879414-1879433 None:intergenic 25.0%
! TTTGTGAACAATAATAAGCA+TGG - chr3_2:1879414-1879433 Msa0390790:CDS 25.0%
GTGGTTTAATTGAATGAAGT+TGG + chr3_2:1875749-1875768 None:intergenic 30.0%
CAAGCAAAGTAGAAATTAGT+TGG + chr3_2:1876033-1876052 None:intergenic 30.0%
ACATGTTATGCTGATCAAAA+TGG - chr3_2:1876066-1876085 Msa0390790:CDS 30.0%
GTGTTTGTGTGTAAAATACA+AGG + chr3_2:1876127-1876146 None:intergenic 30.0%
!! AAAAAATTGGGAGTGTTTGA+AGG + chr3_2:1876159-1876178 None:intergenic 30.0%
TAACAAATGGGTAATGAAAG+TGG + chr3_2:1876186-1876205 None:intergenic 30.0%
! ACATCCTGATTTTGTAAAGT+AGG - chr3_2:1876271-1876290 Msa0390790:intron 30.0%
! CATCCTGATTTTGTAAAGTA+GGG - chr3_2:1876272-1876291 Msa0390790:intron 30.0%
! TCATCCAAAAAGTGTAGAAA+AGG + chr3_2:1876541-1876560 None:intergenic 30.0%
TTCTACCAATACAATCCAAA+AGG - chr3_2:1876644-1876663 Msa0390790:intron 30.0%
AAGATCCTTTGATACTGAAT+GGG + chr3_2:1876696-1876715 None:intergenic 30.0%
TATCAAAGGATCTTGTGAAT+TGG - chr3_2:1876702-1876721 Msa0390790:intron 30.0%
! CAACAACCTTTTATATCTGA+CGG + chr3_2:1876761-1876780 None:intergenic 30.0%
! AATGGGTCAGACATATTTTT+GGG + chr3_2:1876878-1876897 None:intergenic 30.0%
!! TAATGGGTCAGACATATTTT+TGG + chr3_2:1876879-1876898 None:intergenic 30.0%
ATCACCAAAAAATCCATTGA+TGG - chr3_2:1876916-1876935 Msa0390790:CDS 30.0%
TGGAAGCAAAATACATAGAA+AGG - chr3_2:1877030-1877049 Msa0390790:intron 30.0%
GGAAGCAAAATACATAGAAA+GGG - chr3_2:1877031-1877050 Msa0390790:intron 30.0%
TGATGTTAAACATGTGCTTA+AGG - chr3_2:1877216-1877235 Msa0390790:CDS 30.0%
!! TGTTAAGGATGTTTTTGTTC+CGG - chr3_2:1877291-1877310 Msa0390790:CDS 30.0%
TTATCCTCAAATCCATTATC+CGG + chr3_2:1877313-1877332 None:intergenic 30.0%
AAGAATAGAAGGATCTTGTT+GGG - chr3_2:1877397-1877416 Msa0390790:intron 30.0%
!!! AGATTTTCAAGTTCTTTCAC+TGG + chr3_2:1877893-1877912 None:intergenic 30.0%
ACTGAATTAACACCAGTAAT+TGG + chr3_2:1877971-1877990 None:intergenic 30.0%
CAATATTGTATCTCGTATGA+CGG - chr3_2:1878069-1878088 Msa0390790:CDS 30.0%
!! TGAAGTGAAAGATTTTGGAA+AGG - chr3_2:1878255-1878274 Msa0390790:CDS 30.0%
!! CCTTTTGACTACACAAAATT+TGG + chr3_2:1878309-1878328 None:intergenic 30.0%
! CCAAATTTTGTGTAGTCAAA+AGG - chr3_2:1878306-1878325 Msa0390790:CDS 30.0%
AGAATGATATGACCACATAT+GGG - chr3_2:1878581-1878600 Msa0390790:intron 30.0%
!!! TACTTCGTGGTTTTATAATC+AGG + chr3_2:1878756-1878775 None:intergenic 30.0%
AATGCAGAGTTTCCTATATT+TGG - chr3_2:1879015-1879034 Msa0390790:intron 30.0%
! TTATCATGGATTGCTAATGT+AGG + chr3_2:1879158-1879177 None:intergenic 30.0%
TACATTAGCAATCCATGATA+AGG - chr3_2:1879157-1879176 Msa0390790:intron 30.0%
! CATATAACAAAGCCTTATCA+TGG + chr3_2:1879172-1879191 None:intergenic 30.0%
ATACTAATTAAACAGGAGAG+TGG - chr3_2:1879284-1879303 Msa0390790:CDS 30.0%
GTATACGTTAATGAAACTTG+AGG + chr3_2:1879335-1879354 None:intergenic 30.0%
ACTCTCTTCTCTCTCATTTA+TGG - chr3_2:1875797-1875816 Msa0390790:three_prime_UTR 35.0%
AAGATGAACTCTCAAGAGTT+CGG + chr3_2:1875862-1875881 None:intergenic 35.0%
! ATAAGGTTGATCGTGATTTG+AGG + chr3_2:1875891-1875910 None:intergenic 35.0%
AAGTGATAGGCAGTTCTATA+AGG + chr3_2:1875908-1875927 None:intergenic 35.0%
TGATCAGCATAACATGTCAA+AGG + chr3_2:1876063-1876082 None:intergenic 35.0%
AGAGGATTGAACTAACCATT+GGG + chr3_2:1876102-1876121 None:intergenic 35.0%
AAGAGGATTGAACTAACCAT+TGG + chr3_2:1876103-1876122 None:intergenic 35.0%
TGTGTAAAATACAAGGGAAG+AGG + chr3_2:1876120-1876139 None:intergenic 35.0%
TGTCCCTACTTTACAAAATC+AGG + chr3_2:1876278-1876297 None:intergenic 35.0%
! TGGTCCTTTTCTACACTTTT+TGG - chr3_2:1876534-1876553 Msa0390790:intron 35.0%
TTTGTAGGACCAATGAGATA+TGG - chr3_2:1876605-1876624 Msa0390790:CDS 35.0%
TAAAGTCCTCCATATCTCAT+TGG + chr3_2:1876617-1876636 None:intergenic 35.0%
TGTTTGGGGAAATATTGTGT+GGG - chr3_2:1876670-1876689 Msa0390790:intron 35.0%
CAAGATCCTTTGATACTGAA+TGG + chr3_2:1876697-1876716 None:intergenic 35.0%
TTATATCTGACGGTTGAGAT+GGG + chr3_2:1876751-1876770 None:intergenic 35.0%
TTTATATCTGACGGTTGAGA+TGG + chr3_2:1876752-1876771 None:intergenic 35.0%
TCTCAACCGTCAGATATAAA+AGG - chr3_2:1876752-1876771 Msa0390790:CDS 35.0%
CGTCAGATATAAAAGGTTGT+TGG - chr3_2:1876759-1876778 Msa0390790:CDS 35.0%
GATATAAAAGGTTGTTGGTC+AGG - chr3_2:1876764-1876783 Msa0390790:CDS 35.0%
! AAACCAGCAATTTTGTACAC+TGG - chr3_2:1876812-1876831 Msa0390790:CDS 35.0%
ATTCCAGTGTACAAAATTGC+TGG + chr3_2:1876818-1876837 None:intergenic 35.0%
!!! GTCAGACATATTTTTGGGTA+TGG + chr3_2:1876873-1876892 None:intergenic 35.0%
!!! GGTTCCATCAATGGATTTTT+TGG + chr3_2:1876923-1876942 None:intergenic 35.0%
AGCTGAATGTAAAGGATGTT+TGG + chr3_2:1877104-1877123 None:intergenic 35.0%
GTATCAAGACCAATGGTTAA+TGG + chr3_2:1877181-1877200 None:intergenic 35.0%
CATAGATGTATCAAGACCAA+TGG + chr3_2:1877188-1877207 None:intergenic 35.0%
GGTCTTGATACATCTATGAA+TGG - chr3_2:1877190-1877209 Msa0390790:intron 35.0%
! ACATGTGCTTAAGGTTAGTT+TGG - chr3_2:1877225-1877244 Msa0390790:CDS 35.0%
TGGGACTTATGATACTGTTA+AGG - chr3_2:1877276-1877295 Msa0390790:CDS 35.0%
!! GATGTTTTTGTTCCGGATAA+TGG - chr3_2:1877298-1877317 Msa0390790:CDS 35.0%
!! TTGATGATGGGAAGAATAGA+AGG - chr3_2:1877386-1877405 Msa0390790:intron 35.0%
GAAGAATAGAAGGATCTTGT+TGG - chr3_2:1877396-1877415 Msa0390790:intron 35.0%
!! GTTGTTGATGATGTCAAGAA+AGG - chr3_2:1877442-1877461 Msa0390790:intron 35.0%
!! TTGATGATGTCAAGAAAGGA+TGG - chr3_2:1877446-1877465 Msa0390790:intron 35.0%
!! TCTGGAATCCATGTAAGTTT+TGG - chr3_2:1877469-1877488 Msa0390790:intron 35.0%
! CTGGAATCCATGTAAGTTTT+GGG - chr3_2:1877470-1877489 Msa0390790:intron 35.0%
! TGGAATCCATGTAAGTTTTG+GGG - chr3_2:1877471-1877490 Msa0390790:intron 35.0%
TGAATTTGCAGACTATTCCA+AGG - chr3_2:1877825-1877844 Msa0390790:CDS 35.0%
GAATTTGCAGACTATTCCAA+GGG - chr3_2:1877826-1877845 Msa0390790:CDS 35.0%
! CTATCTGGCTTCATAAATCA+GGG - chr3_2:1877849-1877868 Msa0390790:CDS 35.0%
TCATAAATCAGGGAAACAGT+TGG - chr3_2:1877859-1877878 Msa0390790:CDS 35.0%
! GGTGAATTGATTCCAATTAC+TGG - chr3_2:1877956-1877975 Msa0390790:CDS 35.0%
! TACTGGTGTTAATTCAGTAC+AGG - chr3_2:1877973-1877992 Msa0390790:CDS 35.0%
GCATGTACCCTTTCTTATAT+AGG + chr3_2:1878164-1878183 None:intergenic 35.0%
!! TTTTGGAAAGGCCGAATTAT+TGG - chr3_2:1878267-1878286 Msa0390790:CDS 35.0%
GAGAATGATATGACCACATA+TGG - chr3_2:1878580-1878599 Msa0390790:intron 35.0%
AGATCACAAGATTGAATGCT+TGG - chr3_2:1879219-1879238 Msa0390790:intron 35.0%
GAACAATAATAAGCATGGTC+AGG - chr3_2:1879419-1879438 Msa0390790:exon 35.0%
AATTGGAGAGATAGCCATTG+TGG + chr3_2:1875768-1875787 None:intergenic 40.0%
AAGAGTTCGGTAAACATGGT+GGG + chr3_2:1875849-1875868 None:intergenic 40.0%
TCTCAAGAGTTCGGTAAACA+TGG + chr3_2:1875853-1875872 None:intergenic 40.0%
ACTTCCAACCTCTCAAGAAT+TGG - chr3_2:1875924-1875943 Msa0390790:exon 40.0%
TGATCCAATTCTTGAGAGGT+TGG + chr3_2:1875931-1875950 None:intergenic 40.0%
CCTCTCAAGAATTGGATCAA+CGG - chr3_2:1875932-1875951 Msa0390790:exon 40.0%
GAGGATTGAACTAACCATTG+GGG + chr3_2:1876101-1876120 None:intergenic 40.0%
! CAGCACCTTTTGGATTGTAT+TGG + chr3_2:1876652-1876671 None:intergenic 40.0%
!! ACAATCCAAAAGGTGCTGTT+TGG - chr3_2:1876654-1876673 Msa0390790:intron 40.0%
!! CAATCCAAAAGGTGCTGTTT+GGG - chr3_2:1876655-1876674 Msa0390790:intron 40.0%
!! AATCCAAAAGGTGCTGTTTG+GGG - chr3_2:1876656-1876675 Msa0390790:intron 40.0%
CTGTTTGGGGAAATATTGTG+TGG - chr3_2:1876669-1876688 Msa0390790:intron 40.0%
TCTTGTGAATTGGACACCAT+TGG - chr3_2:1876712-1876731 Msa0390790:intron 40.0%
CTGACCCATTACTTAGAGAA+TGG - chr3_2:1876888-1876907 Msa0390790:CDS 40.0%
TTCCTAGCCAAGAAGTTGTT+GGG + chr3_2:1876985-1877004 None:intergenic 40.0%
TTTCCTAGCCAAGAAGTTGT+TGG + chr3_2:1876986-1877005 None:intergenic 40.0%
ACTTCTTGGCTAGGAAAAGA+TGG - chr3_2:1876989-1877008 Msa0390790:intron 40.0%
CTTCTTGGCTAGGAAAAGAT+GGG - chr3_2:1876990-1877009 Msa0390790:intron 40.0%
!! TAGGAAAAGATGGGTATTGG+AGG - chr3_2:1876999-1877018 Msa0390790:intron 40.0%
!! AGGAAAAGATGGGTATTGGA+GGG - chr3_2:1877000-1877019 Msa0390790:intron 40.0%
!! GGGTATTGGAGGGTATTAAT+TGG - chr3_2:1877010-1877029 Msa0390790:intron 40.0%
CATCCTTTACATTCAGCTGA+AGG - chr3_2:1877106-1877125 Msa0390790:intron 40.0%
GTTCCTTCAGCTGAATGTAA+AGG + chr3_2:1877112-1877131 None:intergenic 40.0%
TTACATTCAGCTGAAGGAAC+AGG - chr3_2:1877112-1877131 Msa0390790:intron 40.0%
!! TGTTCCGGATAATGGATTTG+AGG - chr3_2:1877306-1877325 Msa0390790:CDS 40.0%
ATAGAAGGATCTTGTTGGGT+TGG - chr3_2:1877401-1877420 Msa0390790:intron 40.0%
TAGAAGGATCTTGTTGGGTT+GGG - chr3_2:1877402-1877421 Msa0390790:intron 40.0%
AAGTAGCCCCAAAACTTACA+TGG + chr3_2:1877480-1877499 None:intergenic 40.0%
! ATTAGTTTGACACGCGTCTA+GGG + chr3_2:1877654-1877673 None:intergenic 40.0%
! AATTAGTTTGACACGCGTCT+AGG + chr3_2:1877655-1877674 None:intergenic 40.0%
! GCTATCTGGCTTCATAAATC+AGG - chr3_2:1877848-1877867 Msa0390790:CDS 40.0%
TACGTATGAACCCAGTCAAT+TGG - chr3_2:1877912-1877931 Msa0390790:CDS 40.0%
AGGCCGAATTATTGGACAAA+TGG - chr3_2:1878275-1878294 Msa0390790:CDS 40.0%
! CAAAAGGGTGCATCAGTAAA+AGG - chr3_2:1878322-1878341 Msa0390790:CDS 40.0%
ATCCACAAAAGTCCCATATG+TGG + chr3_2:1878596-1878615 None:intergenic 40.0%
GAAGCTGTCACTAAGAACTT+TGG - chr3_2:1878633-1878652 Msa0390790:intron 40.0%
GGATGTAGATGGTCAAGATA+TGG - chr3_2:1878874-1878893 Msa0390790:intron 40.0%
TTGACAGATTGACCATTCAG+TGG - chr3_2:1879082-1879101 Msa0390790:intron 40.0%
!! ACATGGTGGGTAGCTTCAAT+GGG + chr3_2:1875836-1875855 None:intergenic 45.0%
!! AACATGGTGGGTAGCTTCAA+TGG + chr3_2:1875837-1875856 None:intergenic 45.0%
CAAGAGTTCGGTAAACATGG+TGG + chr3_2:1875850-1875869 None:intergenic 45.0%
CTTGAGAGGTTGGAAGTGAT+AGG + chr3_2:1875921-1875940 None:intergenic 45.0%
CCGTTGATCCAATTCTTGAG+AGG + chr3_2:1875935-1875954 None:intergenic 45.0%
GTAGGACCAATGAGATATGG+AGG - chr3_2:1876608-1876627 Msa0390790:CDS 45.0%
! TTTCCCCAAACAGCACCTTT+TGG + chr3_2:1876662-1876681 None:intergenic 45.0%
TCAGCAACAATACTTCCAGG+TGG - chr3_2:1876788-1876807 Msa0390790:CDS 45.0%
!! AAAATTGCTGGTTTGCCACC+TGG + chr3_2:1876806-1876825 None:intergenic 45.0%
GCAACAGTAGGTTCCATCAA+TGG + chr3_2:1876932-1876951 None:intergenic 45.0%
TTAGGGACCCAACAACTTCT+TGG - chr3_2:1876975-1876994 Msa0390790:intron 45.0%
GGCTAGGAAAAGATGGGTAT+TGG - chr3_2:1876996-1877015 Msa0390790:intron 45.0%
AGCTGAAGGAACAGGAATGT+GGG - chr3_2:1877120-1877139 Msa0390790:intron 45.0%
GATGTCAAGAAAGGATGGTC+TGG - chr3_2:1877451-1877470 Msa0390790:intron 45.0%
AGACTATTCCAAGGGCTATC+TGG - chr3_2:1877834-1877853 Msa0390790:CDS 45.0%
TTATGAAGCCAGATAGCCCT+TGG + chr3_2:1877845-1877864 None:intergenic 45.0%
! AAGGGTGCATCAGTAAAAGG+TGG - chr3_2:1878325-1878344 Msa0390790:CDS 45.0%
GCATCAGTAAAAGGTGGTGT+TGG - chr3_2:1878331-1878350 Msa0390790:CDS 45.0%
! AAAGGTGGTGTTGGACCATT+TGG - chr3_2:1878340-1878359 Msa0390790:CDS 45.0%
! GACCACATATGGGACTTTTG+TGG - chr3_2:1878591-1878610 Msa0390790:intron 45.0%
GTGACAGCTTCTCATGAAGT+GGG + chr3_2:1878624-1878643 None:intergenic 45.0%
AGTGACAGCTTCTCATGAAG+TGG + chr3_2:1878625-1878644 None:intergenic 45.0%
GGAAACTCTGCATTTGCACT+TGG + chr3_2:1879009-1879028 None:intergenic 45.0%
ACAGATTGACCATTCAGTGG+TGG - chr3_2:1879085-1879104 Msa0390790:intron 45.0%
CAAAACTCTCCACCACTGAA+TGG + chr3_2:1879097-1879116 None:intergenic 45.0%
!! CATTCAGTGGTGGAGAGTTT+TGG - chr3_2:1879095-1879114 Msa0390790:intron 45.0%
!!! ATCATTTTAATATATAATAT+AGG + chr3_2:1876234-1876253 None:intergenic 5.0%
!! ATATTATATATTAAAATGAT+TGG - chr3_2:1876234-1876253 Msa0390790:intron 5.0%
AATGGACATGCAGACCCCAA+TGG - chr3_2:1876084-1876103 Msa0390790:CDS 50.0%
GTGGGCCCATTCAGTATCAA+AGG - chr3_2:1876688-1876707 Msa0390790:intron 50.0%
!! GGGTGGATTGCATGATCCAA+TGG + chr3_2:1876731-1876750 None:intergenic 50.0%
TATCTGACGGTTGAGATGGG+TGG + chr3_2:1876748-1876767 None:intergenic 50.0%
GGCTCAGCAACAATACTTCC+AGG - chr3_2:1876785-1876804 Msa0390790:CDS 50.0%
GACCCAACAACTTCTTGGCT+AGG - chr3_2:1876980-1876999 Msa0390790:intron 50.0%
CAGCTGAAGGAACAGGAATG+TGG - chr3_2:1877119-1877138 Msa0390790:intron 50.0%
! CAGGGAAACAGTTGGTGCAA+TGG - chr3_2:1877867-1877886 Msa0390790:CDS 50.0%
! CCTTGGTTGGCCAATTGACT+GGG + chr3_2:1877925-1877944 None:intergenic 50.0%
! ACCTTGGTTGGCCAATTGAC+TGG + chr3_2:1877926-1877945 None:intergenic 50.0%
TTGGCCAACCAAGGTGATCA+AGG - chr3_2:1877931-1877950 Msa0390790:CDS 50.0%
TGGCCAACCAAGGTGATCAA+GGG - chr3_2:1877932-1877951 Msa0390790:CDS 50.0%
TTCACCTCCCTTGATCACCT+TGG + chr3_2:1877942-1877961 None:intergenic 50.0%
CTGCACGTGCTTGCTTCTAA+AGG - chr3_2:1878364-1878383 Msa0390790:CDS 50.0%
TCATGTGCAGCGATCAAAGC+AGG - chr3_2:1878449-1878468 Msa0390790:CDS 50.0%
!! TCAGTGGTGGAGAGTTTTGG+TGG - chr3_2:1879098-1879117 Msa0390790:intron 50.0%
!! GTGGAGAGTTTTGGTGGAGA+AGG - chr3_2:1879104-1879123 Msa0390790:intron 50.0%
CCCAGTCAATTGGCCAACCA+AGG - chr3_2:1877922-1877941 Msa0390790:CDS 55.0%
CCTCCCTTGATCACCTTGGT+TGG + chr3_2:1877938-1877957 None:intergenic 55.0%
CCAACCAAGGTGATCAAGGG+AGG - chr3_2:1877935-1877954 Msa0390790:CDS 55.0%
GCAAGCACGTGCAGACCAAA+TGG + chr3_2:1878358-1878377 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 1875744 1879459 1875744 ID=Msa0390790;Name=Msa0390790
chr3_2 mRNA 1875744 1879459 1875744 ID=Msa0390790-mRNA-1;Parent=Msa0390790;Name=Msa0390790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=26|1|1|1|1|1|6|191|572
chr3_2 exon 1875744 1876114 1875744 ID=Msa0390790-mRNA-1:exon:573;Parent=Msa0390790-mRNA-1
chr3_2 exon 1876549 1876639 1876549 ID=Msa0390790-mRNA-1:exon:572;Parent=Msa0390790-mRNA-1
chr3_2 exon 1876733 1876968 1876733 ID=Msa0390790-mRNA-1:exon:571;Parent=Msa0390790-mRNA-1
chr3_2 exon 1877209 1877367 1877209 ID=Msa0390790-mRNA-1:exon:570;Parent=Msa0390790-mRNA-1
chr3_2 exon 1877723 1878591 1877723 ID=Msa0390790-mRNA-1:exon:569;Parent=Msa0390790-mRNA-1
chr3_2 exon 1879250 1879459 1879250 ID=Msa0390790-mRNA-1:exon:568;Parent=Msa0390790-mRNA-1
chr3_2 five_prime_UTR 1879434 1879459 1879434 ID=Msa0390790-mRNA-1:five_prime_utr;Parent=Msa0390790-mRNA-1
chr3_2 CDS 1879250 1879433 1879250 ID=Msa0390790-mRNA-1:cds;Parent=Msa0390790-mRNA-1
chr3_2 CDS 1877723 1878591 1877723 ID=Msa0390790-mRNA-1:cds;Parent=Msa0390790-mRNA-1
chr3_2 CDS 1877209 1877367 1877209 ID=Msa0390790-mRNA-1:cds;Parent=Msa0390790-mRNA-1
chr3_2 CDS 1876733 1876968 1876733 ID=Msa0390790-mRNA-1:cds;Parent=Msa0390790-mRNA-1
chr3_2 CDS 1876549 1876639 1876549 ID=Msa0390790-mRNA-1:cds;Parent=Msa0390790-mRNA-1
chr3_2 CDS 1875935 1876114 1875935 ID=Msa0390790-mRNA-1:cds;Parent=Msa0390790-mRNA-1
chr3_2 three_prime_UTR 1875744 1875934 1875744 ID=Msa0390790-mRNA-1:three_prime_utr;Parent=Msa0390790-mRNA-1
Gene Sequence

>Msa0390790

ATGGCTATCTCTCCAATTTTATTGCTAACTCTCTTCTCTCTCATTTATGGCAATTATATTATTCCCATTGAAGCTACCCACCATGTTTACCGAACTCTTGAGAGTTCATCTTCTGATTCCTCAAATCACGATCAACCTTATAGAACTGCCTATCACTTCCAACCTCTCAAGAATTGGATCAACGGACCAATGAGATATGGAGGACTTTATCATCTGTTCTACCAATACAATCCAAAAGGTGCTGTTTGGGGAAATATTGTGTGGGCCCATTCAGTATCAAAGGATCTTGTGAATTGGACACCATTGGATCATGCAATCCACCCATCTCAACCGTCAGATATAAAAGGTTGTTGGTCAGGCTCAGCAACAATACTTCCAGGTGGCAAACCAGCAATTTTGTACACTGGAATTGATCCAAATAATCATCAAGTTCAAAACATAGCCATACCCAAAAATATGTCTGACCCATTACTTAGAGAATGGAAAAAATCACCAAAAAATCCATTGATGGAACCTACTGTTGCTAACAAAATAAATGCAAGTTCATTTAGGGACCCAACAACTTCTTGGCTAGGAAAAGATGGGTATTGGAGGGTATTAATTGGAAGCAAAATACATAGAAAGGGAATTGCAATTATGTACAAAAGTAAAAATTTTGTTGATTGGGTTGAAGCCAAACATCCTTTACATTCAGCTGAAGGAACAGGAATGTGGGAGTGTCCTGATTTTTTTCCTGTATTAAATAAGAATCCATTAACCATTGGTCTTGATACATCTATGAATGGTGATGATGTTAAACATGTGCTTAAGGTTAGTTTGGATGACACAAAACATGATCACTATTTGATTGGGACTTATGATACTGTTAAGGATGTTTTTGTTCCGGATAATGGATTTGAGGATAATCAAAATGTGTTGAGATATGATTATGGGAAATATTATGCATCTAAAACATTTTTTGATGATGGGAAGAATAGAAGGATCTTGTTGGGTTGGGCTAATGAATCTTCAAGTGTTGTTGATGATGTCAAGAAAGGATGGTCTGGAATCCATACTATTCCAAGGGCTATCTGGCTTCATAAATCAGGGAAACAGTTGGTGCAATGGCCAGTGAAAGAACTTGAAAATCTACGTATGAACCCAGTCAATTGGCCAACCAAGGTGATCAAGGGAGGTGAATTGATTCCAATTACTGGTGTTAATTCAGTACAGGCTGATGTTGAAATTTCATTTGAAGTGAAAGATTTTGGAAAGGCCGAATTATTGGACAAATGGATAGATCCCCAAATTTTGTGTAGTCAAAAGGGTGCATCAGTAAAAGGTGGTGTTGGACCATTTGGTCTGCACGTGCTTGCTTCTAAAGGCTTGCAAGAGTACACAGCAGTATTTTTTAGAATATTCAGATATCAACATAAGAATTTGGTTCTCATGTGCAGCGATCAAAGCAGGTCATCTTTGAATAAAGAGAATGATATGACCACATATGGGACTTTTGTGGATGTTGACCCACTTCATGAGAAGCTGTCACTAAGAACTTTGATTGACCATTCAGTGGTGGAGAGTTTTGGTGGAGAAGGAAGAGCTTGCATCACAGCTAGAGTTTATCCTACATTAGCAATCCATGATAAGGCTTTGTTATATGCTTTCAATAATGGAAATTCTGCAGTCAAGATCACAAGATTGAATGCTTGGAGCATGAAGAAAGCAAAAATCAACTAA

Protein sequence

>Msa0390790

MAISPILLLTLFSLIYGNYIIPIEATHHVYRTLESSSSDSSNHDQPYRTAYHFQPLKNWINGPMRYGGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIHPSQPSDIKGCWSGSATILPGGKPAILYTGIDPNNHQVQNIAIPKNMSDPLLREWKKSPKNPLMEPTVANKINASSFRDPTTSWLGKDGYWRVLIGSKIHRKGIAIMYKSKNFVDWVEAKHPLHSAEGTGMWECPDFFPVLNKNPLTIGLDTSMNGDDVKHVLKVSLDDTKHDHYLIGTYDTVKDVFVPDNGFEDNQNVLRYDYGKYYASKTFFDDGKNRRILLGWANESSSVVDDVKKGWSGIHTIPRAIWLHKSGKQLVQWPVKELENLRMNPVNWPTKVIKGGELIPITGVNSVQADVEISFEVKDFGKAELLDKWIDPQILCSQKGASVKGGVGPFGLHVLASKGLQEYTAVFFRIFRYQHKNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACITARVYPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKKAKIN*