AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221270 MtrunA17_Chr4g0072601 95.539 269 7 1 1 264 21 289 0.0 531
Msa1221270 MtrunA17_Chr4g0072611 75.000 264 61 1 2 260 19 282 7.41e-154 430
Msa1221270 MtrunA17_Chr7g0258911 75.379 264 60 1 2 260 18 281 4.28e-148 415
Msa1221270 MtrunA17_Chr4g0072671 72.761 268 64 2 1 259 19 286 6.30e-143 402
Msa1221270 MtrunA17_Chr4g0071341 70.229 262 72 2 5 260 22 283 1.16e-133 379
Msa1221270 MtrunA17_Chr8g0377841 65.283 265 81 3 1 259 23 282 3.36e-127 362
Msa1221270 MtrunA17_Chr2g0299061 63.806 268 87 2 1 258 19 286 1.25e-126 361
Msa1221270 MtrunA17_Chr3g0122021 66.023 259 77 2 5 258 25 277 4.05e-123 352
Msa1221270 MtrunA17_Chr3g0122031 66.023 259 77 2 5 258 25 277 5.15e-123 352
Msa1221270 MtrunA17_Chr4g0072681 64.198 243 74 3 29 258 1 243 6.48e-112 322
Msa1221270 MtrunA17_Chr8g0389641 56.371 259 66 3 5 258 26 242 8.08e-103 299
Msa1221270 MtrunA17_Chr6g0486581 52.612 268 114 5 1 258 19 283 1.40e-94 280
Msa1221270 MtrunA17_Chr5g0443391 48.120 266 128 2 2 262 22 282 3.21e-90 268
Msa1221270 MtrunA17_Chr6g0461761 53.360 253 107 4 15 259 39 288 4.54e-90 268
Msa1221270 MtrunA17_Chr6g0461731 52.569 253 109 4 15 259 62 311 1.23e-89 268
Msa1221270 MtrunA17_Chr4g0054451 49.225 258 118 5 10 258 36 289 3.97e-89 266
Msa1221270 MtrunA17_Chr4g0054431 49.225 258 118 5 10 258 34 287 4.20e-89 266
Msa1221270 MtrunA17_Chr7g0252631 49.624 266 117 5 2 258 30 287 6.95e-87 260
Msa1221270 MtrunA17_Chr7g0252601 52.000 250 113 3 15 258 39 287 8.73e-87 260
Msa1221270 MtrunA17_Chr3g0096651 49.597 248 117 2 16 258 38 282 1.41e-86 259
Msa1221270 MtrunA17_Chr7g0252621 49.624 266 117 5 2 258 30 287 1.70e-86 259
Msa1221270 MtrunA17_Chr1g0206681 46.992 266 134 2 2 260 28 293 6.05e-86 258
Msa1221270 MtrunA17_Chr2g0323161 49.402 251 112 4 23 259 38 287 2.59e-85 256
Msa1221270 MtrunA17_Chr4g0023961 48.249 257 118 4 22 264 39 294 1.34e-83 252
Msa1221270 MtrunA17_Chr8g0390201 53.333 210 91 4 55 258 1 209 5.40e-77 232
Msa1221270 MtrunA17_Chr1g0206081 43.657 268 134 4 6 260 33 296 5.22e-76 233
Msa1221270 MtrunA17_Chr8g0340001 46.352 233 117 4 32 258 1 231 1.73e-64 201
Msa1221270 MtrunA17_Chr4g0072641 67.176 131 29 1 130 260 34 150 6.70e-61 189
Msa1221270 MtrunA17_Chr4g0028221 42.149 242 120 6 30 258 70 304 8.03e-58 186
Msa1221270 MtrunA17_Chr7g0264731 39.474 266 139 7 7 259 36 292 2.31e-56 182
Msa1221270 MtrunA17_Chr2g0327411 37.945 253 137 6 10 249 56 301 6.58e-55 179
Msa1221270 MtrunA17_Chr1g0180451 38.202 267 139 8 7 258 39 294 1.49e-54 177
Msa1221270 MtrunA17_Chr8g0375981 36.078 255 152 4 16 260 39 292 2.67e-53 176
Msa1221270 MtrunA17_Chr2g0303861 39.453 256 139 6 10 258 31 277 1.54e-52 172
Msa1221270 MtrunA17_Chr1g0161951 37.786 262 143 8 16 263 41 296 7.79e-51 169
Msa1221270 MtrunA17_Chr8g0365231 37.308 260 145 8 15 258 53 310 2.05e-50 167
Msa1221270 MtrunA17_Chr2g0303721 38.776 245 139 8 16 256 38 275 7.76e-50 165
Msa1221270 MtrunA17_Chr5g0410621 37.262 263 148 6 13 260 47 307 2.19e-48 163
Msa1221270 MtrunA17_Chr7g0235541 40.367 218 111 6 55 261 1 210 5.69e-45 150
Msa1221270 MtrunA17_Chr8g0382041 33.712 264 155 8 16 264 42 300 2.34e-41 144
Msa1221270 MtrunA17_Chr8g0374231 43.925 107 51 3 159 260 1 103 1.89e-24 94.4
Msa1221270 MtrunA17_Chr4g0072631 74.510 51 13 0 5 55 28 78 5.27e-21 85.1
Msa1221270 MtrunA17_Chr8g0350711 33.333 174 103 6 30 196 54 221 6.01e-14 69.3
Msa1221270 MtrunA17_Chr8g0390181 44.615 65 34 1 6 70 26 88 3.23e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221270 AT4G25810.1 70.189 265 72 2 1 258 19 283 3.08e-142 400
Msa1221270 AT5G57560.1 68.182 264 76 2 3 258 18 281 1.74e-139 394
Msa1221270 AT5G57550.1 68.966 261 73 2 3 258 25 282 2.83e-137 388
Msa1221270 AT4G30270.1 66.540 263 69 2 5 262 21 269 6.52e-132 374
Msa1221270 AT2G18800.1 64.184 282 83 5 1 264 21 302 1.75e-130 372
Msa1221270 AT5G48070.1 64.639 263 83 3 3 259 24 282 1.25e-128 366
Msa1221270 AT4G30280.1 64.528 265 84 3 1 259 22 282 5.41e-123 352
Msa1221270 AT5G57530.1 61.303 261 96 1 5 260 24 284 1.74e-121 348
Msa1221270 AT3G23730.1 59.774 266 98 2 2 258 21 286 2.85e-121 348
Msa1221270 AT1G65310.1 63.498 263 86 3 3 259 24 282 3.11e-120 345
Msa1221270 AT1G65310.2 63.498 263 86 3 3 259 46 304 3.55e-120 345
Msa1221270 AT4G14130.1 60.687 262 97 2 3 258 23 284 4.00e-120 345
Msa1221270 AT4G30290.1 63.019 265 88 3 1 259 17 277 1.29e-119 343
Msa1221270 AT5G57540.1 59.387 261 101 1 5 260 23 283 3.78e-119 342
Msa1221270 AT4G25820.1 58.868 265 104 1 1 260 23 287 1.84e-115 333
Msa1221270 AT5G65730.1 46.008 263 133 4 3 258 30 290 4.24e-87 261
Msa1221270 AT5G13870.2 52.174 253 108 4 15 258 39 287 2.79e-86 259
Msa1221270 AT5G13870.1 52.174 253 108 4 15 258 39 287 2.79e-86 259
Msa1221270 AT5G13870.3 52.174 253 108 4 15 258 39 287 2.79e-86 259
Msa1221270 AT4G03210.1 51.852 243 108 3 24 258 43 284 1.26e-85 257
Msa1221270 AT4G37800.1 48.263 259 121 5 11 260 37 291 3.76e-85 256
Msa1221270 AT4G28850.1 47.674 258 123 4 14 261 35 290 7.56e-85 255
Msa1221270 AT2G06850.1 50.198 253 113 4 15 258 42 290 2.57e-82 249
Msa1221270 AT4G03210.2 51.477 237 103 4 30 258 24 256 3.38e-81 245
Msa1221270 AT2G14620.1 45.693 267 136 4 2 260 31 296 7.84e-79 240
Msa1221270 AT2G06850.2 51.304 230 99 4 38 258 5 230 6.06e-78 236
Msa1221270 AT1G11545.1 44.569 267 125 6 11 260 41 301 9.77e-77 235
Msa1221270 AT4G13090.1 46.640 253 125 4 14 258 38 288 3.03e-73 226
Msa1221270 AT2G14620.2 47.826 230 111 4 39 260 18 246 1.43e-71 220
Msa1221270 AT2G14620.3 48.214 224 107 4 45 260 13 235 6.60e-70 215
Msa1221270 AT3G25050.1 43.969 257 132 5 10 258 37 289 1.18e-69 216
Msa1221270 AT4G13080.1 45.200 250 129 4 14 258 45 291 1.11e-68 214
Msa1221270 AT2G36870.1 40.000 265 137 6 7 258 42 297 3.30e-57 185
Msa1221270 AT1G14720.1 37.743 257 145 7 16 260 39 292 2.74e-52 173
Msa1221270 AT3G44990.1 40.244 246 121 8 29 258 58 293 6.55e-52 171
Msa1221270 AT1G32170.1 36.604 265 151 7 10 260 34 295 2.57e-51 171
Msa1221270 AT1G10550.1 36.015 261 143 7 19 258 52 309 7.65e-49 164
Msa1221270 AT2G01850.1 35.798 257 150 7 16 260 39 292 1.23e-48 164
Msa1221270 AT3G48580.1 37.121 264 139 10 1 258 31 273 3.66e-43 148
Msa1221270 AT4G18990.1 33.213 277 159 7 10 262 42 316 4.15e-43 150
Msa1221270 AT4G18990.2 35.000 220 121 6 63 262 25 242 1.69e-38 136
Msa1221270 AT3G48580.3 37.445 227 120 8 38 258 4 214 1.60e-37 132
Msa1221270 AT2G36870.2 42.446 139 65 3 7 132 42 178 5.99e-27 103
Msa1221270 AT3G48580.2 31.818 264 133 11 1 258 31 253 7.38e-26 102

Find 70 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAATCAATATCTTTA+TGG 0.128432 8_1:-84840119 Msa1221270:CDS
GAGAACAACAATTCTATTTA+TGG 0.140855 8_1:-84839824 Msa1221270:CDS
AATCTCATTGGCTGCTTCTT+TGG 0.175421 8_1:+84839053 None:intergenic
TCCATAAAGATATTGATTAT+TGG 0.219272 8_1:+84840118 None:intergenic
ATTGGCTGCTTCTTTGGATA+TGG 0.238008 8_1:+84839059 None:intergenic
TGAAATAGACTTTGAATTCT+TGG 0.240382 8_1:-84839910 Msa1221270:CDS
GACCCTGAGGGAATCGTTTA+AGG 0.250841 8_1:+84838775 None:intergenic
TATTGATGGCAGACCAATTA+GGG 0.305687 8_1:-84839111 Msa1221270:CDS
AAGTTCTTGAATTCCCTAAT+TGG 0.320227 8_1:+84839098 None:intergenic
TTCCTAAAAGAAGCAGTAAA+TGG 0.325310 8_1:+84838957 None:intergenic
CTATTGATGGCAGACCAATT+AGG 0.330217 8_1:-84839112 Msa1221270:CDS
CAAATCAGAAAAGGCTCAAA+TGG 0.340400 8_1:-84838836 Msa1221270:CDS
ATGCAAATTAAACTTGTTCC+TGG 0.361969 8_1:-84840086 Msa1221270:CDS
GAAATAGACTTTGAATTCTT+GGG 0.378927 8_1:-84839909 Msa1221270:CDS
ATTCCCTCAGGGTCTCCCTT+TGG 0.410581 8_1:-84838766 Msa1221270:CDS
ACTCTTCTTCTGACAATGCT+TGG 0.416402 8_1:-84838881 Msa1221270:CDS
GTTCTCTGTCCCCTTTGCCT+AGG 0.418397 8_1:+84839841 None:intergenic
TTCTCTGTCCCCTTTGCCTA+GGG 0.435604 8_1:+84839842 None:intergenic
GTCTGTGGAATGCTGATGAT+TGG 0.441709 8_1:-84839022 Msa1221270:CDS
CTAGACAGAACCTCTGGCTC+TGG 0.460483 8_1:-84840149 Msa1221270:CDS
ATGTGTACACCCTAGGCAAA+GGG 0.461356 8_1:-84839851 Msa1221270:CDS
TAGGTATGAAAATCTGTAGT+TGG 0.461780 8_1:+84839795 None:intergenic
TCCTCTTAATTCTCATGACT+TGG 0.468978 8_1:+84838728 None:intergenic
AATTAGGGAATTCAAGAACT+TGG 0.476768 8_1:-84839096 Msa1221270:CDS
ACCAAGTCATGAGAATTAAG+AGG 0.478850 8_1:-84838729 Msa1221270:exon
GAAACTTACACAACATGTGC+AGG 0.480987 8_1:+84839756 None:intergenic
AGACTTGAATATAATCTCAT+TGG 0.482257 8_1:+84839041 None:intergenic
AATGATAAGCAAACGAAAGA+TGG 0.487788 8_1:+84838653 None:intergenic
ATTGGACAAAACACAACCAT+TGG 0.488431 8_1:+84838926 None:intergenic
CTTGTTCCTGGAAATTCAGC+TGG 0.496538 8_1:-84840074 Msa1221270:CDS
ATCAAGATGTTAGTATCACT+TGG 0.496547 8_1:-84840223 Msa1221270:CDS
TAGATTCTACAAATCAGAAA+AGG 0.498615 8_1:-84838845 Msa1221270:CDS
TGACCTTAAACGATTCCCTC+AGG 0.499561 8_1:-84838778 Msa1221270:CDS
TTTGCAAGAAGAAATTCCAT+TGG 0.499781 8_1:+84838908 None:intergenic
ACATTGGTATGAACTATGTA+AGG 0.504779 8_1:+84839870 None:intergenic
ACCGTGCCAGCTGAATTTCC+AGG 0.514387 8_1:+84840068 None:intergenic
TTTAGGAACTTCAAAGCCAA+TGG 0.515491 8_1:-84838942 Msa1221270:CDS
AGCATTGTCAGAAGAAGAGT+TGG 0.525258 8_1:+84838884 None:intergenic
AGGATTCCAGAGAAAAGAAT+AGG 0.527569 8_1:+84839776 None:intergenic
TCAAGATGTTAGTATCACTT+GGG 0.531310 8_1:-84840222 Msa1221270:CDS
ACGTTCAGAAGGGTCATTGT+GGG 0.534482 8_1:-84839934 Msa1221270:CDS
AAATCAGAAAAGGCTCAAAT+GGG 0.537276 8_1:-84838835 Msa1221270:CDS
TTAATTCTCATGACTTGGTA+CGG 0.539231 8_1:+84838733 None:intergenic
TCTGTGGAATGCTGATGATT+GGG 0.547719 8_1:-84839021 Msa1221270:CDS
TCCTGGAAATTCAGCTGGCA+CGG 0.548180 8_1:-84840069 Msa1221270:intron
CTGTCTCTAGACAGAACCTC+TGG 0.548223 8_1:-84840155 Msa1221270:CDS
GCATTGCAGTTACGTTCAGA+AGG 0.549452 8_1:-84839945 Msa1221270:intron
TTTGCCTAGGGTGTACACAT+TGG 0.559431 8_1:+84839854 None:intergenic
GTGGACTTGTGAAAACAGAT+TGG 0.561998 8_1:-84838989 Msa1221270:CDS
TACGGACAGTGCATTCCAAA+GGG 0.563184 8_1:+84838751 None:intergenic
AATGTGTACACCCTAGGCAA+AGG 0.565362 8_1:-84839852 Msa1221270:CDS
TGAGATTATATTCAAGTCTG+TGG 0.566225 8_1:-84839037 Msa1221270:CDS
TACAAGTAATAAACTACTAG+AGG 0.585236 8_1:+84838699 None:intergenic
GTACGGACAGTGCATTCCAA+AGG 0.598915 8_1:+84838750 None:intergenic
CATACCAATGTGTACACCCT+AGG 0.600781 8_1:-84839858 Msa1221270:CDS
GACCTTAAACGATTCCCTCA+GGG 0.603618 8_1:-84838777 Msa1221270:CDS
GATGATTGGGCAACAAGAGG+TGG 0.606066 8_1:-84839008 Msa1221270:CDS
TTCAAGAACTTGGAGAGTGA+AGG 0.610761 8_1:-84839086 Msa1221270:CDS
CAAGATGTTAGTATCACTTG+GGG 0.610855 8_1:-84840221 Msa1221270:CDS
GAATTCTTGGGAAATTTGAG+TGG 0.630242 8_1:-84839897 Msa1221270:CDS
CATTGCAGTTACGTTCAGAA+GGG 0.632405 8_1:-84839944 Msa1221270:intron
TACGTTCAGAAGGGTCATTG+TGG 0.637977 8_1:-84839935 Msa1221270:CDS
GGATTGAAAGCCAGAGCCAG+AGG 0.638116 8_1:+84840139 None:intergenic
AGATGTTAGTATCACTTGGG+GGG 0.655003 8_1:-84840219 Msa1221270:CDS
ATTCCAAAGGGAGACCCTGA+GGG 0.664464 8_1:+84838763 None:intergenic
CATTCCAAAGGGAGACCCTG+AGG 0.667653 8_1:+84838762 None:intergenic
AGAGGTAAGATTGTGAACAA+TGG 0.680526 8_1:-84840191 Msa1221270:CDS
GCTGATGATTGGGCAACAAG+AGG 0.682230 8_1:-84839011 Msa1221270:CDS
TGTGTACACCCTAGGCAAAG+GGG 0.687067 8_1:-84839850 Msa1221270:CDS
AAGATGTTAGTATCACTTGG+GGG 0.699999 8_1:-84840220 Msa1221270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAATTTATAAAAA+TGG + chr8_1:84839220-84839239 None:intergenic 0.0%
!!! ATTTTTTAAATTTATAAAAA+TGG + chr8_1:84839220-84839239 None:intergenic 0.0%
!! AAACATTAAACATATTAATA+AGG + chr8_1:84838852-84838871 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - chr8_1:84838856-84838875 Msa1221270:CDS 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr8_1:84839313-84839332 Msa1221270:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr8_1:84839314-84839333 Msa1221270:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG + chr8_1:84839314-84839333 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr8_1:84839313-84839332 Msa1221270:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr8_1:84839314-84839333 Msa1221270:intron 10.0%
!! AAACATTAAACATATTAATA+AGG + chr8_1:84838852-84838871 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - chr8_1:84838856-84838875 Msa1221270:CDS 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr8_1:84839313-84839332 Msa1221270:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr8_1:84839314-84839333 Msa1221270:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG + chr8_1:84839314-84839333 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr8_1:84839313-84839332 Msa1221270:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr8_1:84839314-84839333 Msa1221270:intron 10.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - chr8_1:84839143-84839162 Msa1221270:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG - chr8_1:84839252-84839271 Msa1221270:intron 15.0%
!!! ATTTTCAAAAATTTAAGGAT+TGG + chr8_1:84839341-84839360 None:intergenic 15.0%
!! TATTTATCAAAATTAAGGAT+TGG + chr8_1:84839373-84839392 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - chr8_1:84839580-84839599 Msa1221270:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG + chr8_1:84839673-84839692 None:intergenic 15.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - chr8_1:84839143-84839162 Msa1221270:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG - chr8_1:84839252-84839271 Msa1221270:intron 15.0%
!!! ATTTTCAAAAATTTAAGGAT+TGG + chr8_1:84839341-84839360 None:intergenic 15.0%
!! TATTTATCAAAATTAAGGAT+TGG + chr8_1:84839373-84839392 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - chr8_1:84839580-84839599 Msa1221270:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG + chr8_1:84839673-84839692 None:intergenic 15.0%
!! TCCAATAATCAATATCTTTA+TGG - chr8_1:84838742-84838761 Msa1221270:CDS 20.0%
!!! TCCATAAAGATATTGATTAT+TGG + chr8_1:84838746-84838765 None:intergenic 20.0%
!!! GGATCAAATTTCAAATTTTA+AGG - chr8_1:84839273-84839292 Msa1221270:intron 20.0%
!! AACAAATTATATGTACCAAT+TGG - chr8_1:84839554-84839573 Msa1221270:intron 20.0%
!! TCCAATAATCAATATCTTTA+TGG - chr8_1:84838742-84838761 Msa1221270:CDS 20.0%
!!! TCCATAAAGATATTGATTAT+TGG + chr8_1:84838746-84838765 None:intergenic 20.0%
!!! GGATCAAATTTCAAATTTTA+AGG - chr8_1:84839273-84839292 Msa1221270:intron 20.0%
!! AACAAATTATATGTACCAAT+TGG - chr8_1:84839554-84839573 Msa1221270:intron 20.0%
! TGAAATAGACTTTGAATTCT+TGG - chr8_1:84838951-84838970 Msa1221270:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG - chr8_1:84838952-84838971 Msa1221270:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG - chr8_1:84839037-84839056 Msa1221270:CDS 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - chr8_1:84839282-84839301 Msa1221270:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - chr8_1:84839283-84839302 Msa1221270:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - chr8_1:84839435-84839454 Msa1221270:intron 25.0%
! GACAATGCATAATATATACA+AGG + chr8_1:84839486-84839505 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG + chr8_1:84839572-84839591 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - chr8_1:84839736-84839755 Msa1221270:intron 25.0%
! AGACTTGAATATAATCTCAT+TGG + chr8_1:84839823-84839842 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - chr8_1:84840016-84840035 Msa1221270:intron 25.0%
! TACAAGTAATAAACTACTAG+AGG + chr8_1:84840165-84840184 None:intergenic 25.0%
! TGAAATAGACTTTGAATTCT+TGG - chr8_1:84838951-84838970 Msa1221270:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG - chr8_1:84838952-84838971 Msa1221270:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG - chr8_1:84839037-84839056 Msa1221270:CDS 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - chr8_1:84839282-84839301 Msa1221270:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - chr8_1:84839283-84839302 Msa1221270:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - chr8_1:84839435-84839454 Msa1221270:intron 25.0%
! GACAATGCATAATATATACA+AGG + chr8_1:84839486-84839505 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG + chr8_1:84839572-84839591 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - chr8_1:84839736-84839755 Msa1221270:intron 25.0%
! AGACTTGAATATAATCTCAT+TGG + chr8_1:84839823-84839842 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - chr8_1:84840016-84840035 Msa1221270:intron 25.0%
! TACAAGTAATAAACTACTAG+AGG + chr8_1:84840165-84840184 None:intergenic 25.0%
ATCAAGATGTTAGTATCACT+TGG - chr8_1:84838638-84838657 Msa1221270:three_prime_UTR 30.0%
TCAAGATGTTAGTATCACTT+GGG - chr8_1:84838639-84838658 Msa1221270:three_prime_UTR 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - chr8_1:84838775-84838794 Msa1221270:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + chr8_1:84838994-84839013 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + chr8_1:84839069-84839088 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG - chr8_1:84839079-84839098 Msa1221270:CDS 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - chr8_1:84839438-84839457 Msa1221270:intron 30.0%
CATAATATATACAAGGTCTG+AGG + chr8_1:84839479-84839498 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG - chr8_1:84839714-84839733 Msa1221270:intron 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + chr8_1:84839766-84839785 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - chr8_1:84839765-84839784 Msa1221270:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG - chr8_1:84839824-84839843 Msa1221270:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + chr8_1:84839907-84839926 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + chr8_1:84839956-84839975 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - chr8_1:84840026-84840045 Msa1221270:intron 30.0%
!! TTAATTCTCATGACTTGGTA+CGG + chr8_1:84840131-84840150 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG + chr8_1:84840211-84840230 None:intergenic 30.0%
ATCAAGATGTTAGTATCACT+TGG - chr8_1:84838638-84838657 Msa1221270:three_prime_UTR 30.0%
TCAAGATGTTAGTATCACTT+GGG - chr8_1:84838639-84838658 Msa1221270:three_prime_UTR 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - chr8_1:84838775-84838794 Msa1221270:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + chr8_1:84838994-84839013 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + chr8_1:84839069-84839088 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG - chr8_1:84839079-84839098 Msa1221270:CDS 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - chr8_1:84839438-84839457 Msa1221270:intron 30.0%
CATAATATATACAAGGTCTG+AGG + chr8_1:84839479-84839498 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG - chr8_1:84839714-84839733 Msa1221270:intron 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + chr8_1:84839766-84839785 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - chr8_1:84839765-84839784 Msa1221270:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG - chr8_1:84839824-84839843 Msa1221270:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + chr8_1:84839907-84839926 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + chr8_1:84839956-84839975 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - chr8_1:84840026-84840045 Msa1221270:intron 30.0%
!! TTAATTCTCATGACTTGGTA+CGG + chr8_1:84840131-84840150 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG + chr8_1:84840211-84840230 None:intergenic 30.0%
CAAGATGTTAGTATCACTTG+GGG - chr8_1:84838640-84838659 Msa1221270:three_prime_UTR 35.0%
AAGATGTTAGTATCACTTGG+GGG - chr8_1:84838641-84838660 Msa1221270:three_prime_UTR 35.0%
AGAGGTAAGATTGTGAACAA+TGG - chr8_1:84838670-84838689 Msa1221270:three_prime_UTR 35.0%
GAATTCTTGGGAAATTTGAG+TGG - chr8_1:84838964-84838983 Msa1221270:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + chr8_1:84839088-84839107 None:intergenic 35.0%
! ATGCAGAGTTTGAAACACAT+AGG - chr8_1:84839406-84839425 Msa1221270:intron 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - chr8_1:84839441-84839460 Msa1221270:intron 35.0%
! AAGGTCTGAGGTTTAAACTT+CGG + chr8_1:84839467-84839486 None:intergenic 35.0%
TATCAACTGAGCTAAAGTCA+CGG - chr8_1:84839508-84839527 Msa1221270:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + chr8_1:84839703-84839722 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG - chr8_1:84839750-84839769 Msa1221270:intron 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - chr8_1:84839902-84839921 Msa1221270:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - chr8_1:84839919-84839938 Msa1221270:CDS 35.0%
ATTGGACAAAACACAACCAT+TGG + chr8_1:84839938-84839957 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - chr8_1:84839937-84839956 Msa1221270:CDS 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - chr8_1:84840025-84840044 Msa1221270:intron 35.0%
ACCAAGTCATGAGAATTAAG+AGG - chr8_1:84840132-84840151 Msa1221270:CDS 35.0%
TCCTCTTAATTCTCATGACT+TGG + chr8_1:84840136-84840155 None:intergenic 35.0%
CAAGATGTTAGTATCACTTG+GGG - chr8_1:84838640-84838659 Msa1221270:three_prime_UTR 35.0%
AAGATGTTAGTATCACTTGG+GGG - chr8_1:84838641-84838660 Msa1221270:three_prime_UTR 35.0%
AGAGGTAAGATTGTGAACAA+TGG - chr8_1:84838670-84838689 Msa1221270:three_prime_UTR 35.0%
GAATTCTTGGGAAATTTGAG+TGG - chr8_1:84838964-84838983 Msa1221270:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + chr8_1:84839088-84839107 None:intergenic 35.0%
! ATGCAGAGTTTGAAACACAT+AGG - chr8_1:84839406-84839425 Msa1221270:intron 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - chr8_1:84839441-84839460 Msa1221270:intron 35.0%
! AAGGTCTGAGGTTTAAACTT+CGG + chr8_1:84839467-84839486 None:intergenic 35.0%
TATCAACTGAGCTAAAGTCA+CGG - chr8_1:84839508-84839527 Msa1221270:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + chr8_1:84839703-84839722 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG - chr8_1:84839750-84839769 Msa1221270:intron 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - chr8_1:84839902-84839921 Msa1221270:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - chr8_1:84839919-84839938 Msa1221270:CDS 35.0%
ATTGGACAAAACACAACCAT+TGG + chr8_1:84839938-84839957 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - chr8_1:84839937-84839956 Msa1221270:CDS 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - chr8_1:84840025-84840044 Msa1221270:intron 35.0%
ACCAAGTCATGAGAATTAAG+AGG - chr8_1:84840132-84840151 Msa1221270:CDS 35.0%
TCCTCTTAATTCTCATGACT+TGG + chr8_1:84840136-84840155 None:intergenic 35.0%
AGATGTTAGTATCACTTGGG+GGG - chr8_1:84838642-84838661 Msa1221270:three_prime_UTR 40.0%
CATTGCAGTTACGTTCAGAA+GGG - chr8_1:84838917-84838936 Msa1221270:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + chr8_1:84839108-84839127 None:intergenic 40.0%
! CTATTGATGGCAGACCAATT+AGG - chr8_1:84839749-84839768 Msa1221270:intron 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - chr8_1:84839775-84839794 Msa1221270:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + chr8_1:84839805-84839824 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + chr8_1:84839811-84839830 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG - chr8_1:84839840-84839859 Msa1221270:CDS 40.0%
GTGGACTTGTGAAAACAGAT+TGG - chr8_1:84839872-84839891 Msa1221270:CDS 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + chr8_1:84839980-84839999 None:intergenic 40.0%
ACTCTTCTTCTGACAATGCT+TGG - chr8_1:84839980-84839999 Msa1221270:intron 40.0%
AGATGTTAGTATCACTTGGG+GGG - chr8_1:84838642-84838661 Msa1221270:three_prime_UTR 40.0%
CATTGCAGTTACGTTCAGAA+GGG - chr8_1:84838917-84838936 Msa1221270:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + chr8_1:84839108-84839127 None:intergenic 40.0%
! CTATTGATGGCAGACCAATT+AGG - chr8_1:84839749-84839768 Msa1221270:intron 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - chr8_1:84839775-84839794 Msa1221270:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + chr8_1:84839805-84839824 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + chr8_1:84839811-84839830 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG - chr8_1:84839840-84839859 Msa1221270:CDS 40.0%
GTGGACTTGTGAAAACAGAT+TGG - chr8_1:84839872-84839891 Msa1221270:CDS 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + chr8_1:84839980-84839999 None:intergenic 40.0%
ACTCTTCTTCTGACAATGCT+TGG - chr8_1:84839980-84839999 Msa1221270:intron 40.0%
TTAGTATCACTTGGGGGGAT+GGG - chr8_1:84838647-84838666 Msa1221270:three_prime_UTR 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - chr8_1:84838787-84838806 Msa1221270:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - chr8_1:84838916-84838935 Msa1221270:CDS 45.0%
TACGTTCAGAAGGGTCATTG+TGG - chr8_1:84838926-84838945 Msa1221270:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - chr8_1:84838927-84838946 Msa1221270:CDS 45.0%
CATACCAATGTGTACACCCT+AGG - chr8_1:84839003-84839022 Msa1221270:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG + chr8_1:84839010-84839029 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG - chr8_1:84839009-84839028 Msa1221270:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG - chr8_1:84839010-84839029 Msa1221270:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG - chr8_1:84839839-84839858 Msa1221270:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG - chr8_1:84840083-84840102 Msa1221270:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - chr8_1:84840084-84840103 Msa1221270:CDS 45.0%
TACGGACAGTGCATTCCAAA+GGG + chr8_1:84840113-84840132 None:intergenic 45.0%
TTAGTATCACTTGGGGGGAT+GGG - chr8_1:84838647-84838666 Msa1221270:three_prime_UTR 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - chr8_1:84838787-84838806 Msa1221270:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - chr8_1:84838916-84838935 Msa1221270:CDS 45.0%
TACGTTCAGAAGGGTCATTG+TGG - chr8_1:84838926-84838945 Msa1221270:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - chr8_1:84838927-84838946 Msa1221270:CDS 45.0%
CATACCAATGTGTACACCCT+AGG - chr8_1:84839003-84839022 Msa1221270:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG + chr8_1:84839010-84839029 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG - chr8_1:84839009-84839028 Msa1221270:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG - chr8_1:84839010-84839029 Msa1221270:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG - chr8_1:84839839-84839858 Msa1221270:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG - chr8_1:84840083-84840102 Msa1221270:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - chr8_1:84840084-84840103 Msa1221270:CDS 45.0%
TACGGACAGTGCATTCCAAA+GGG + chr8_1:84840113-84840132 None:intergenic 45.0%
!! ATATTTATTTATCAAAATTA+AGG + chr8_1:84839378-84839397 None:intergenic 5.0%
!! ATATTTATTTATCAAAATTA+AGG + chr8_1:84839378-84839397 None:intergenic 5.0%
GTTAGTATCACTTGGGGGGA+TGG - chr8_1:84838646-84838665 Msa1221270:three_prime_UTR 50.0%
CTGTCTCTAGACAGAACCTC+TGG - chr8_1:84838706-84838725 Msa1221270:three_prime_UTR 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - chr8_1:84838792-84838811 Msa1221270:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - chr8_1:84839011-84839030 Msa1221270:CDS 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + chr8_1:84839022-84839041 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG - chr8_1:84839850-84839869 Msa1221270:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG - chr8_1:84839853-84839872 Msa1221270:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG + chr8_1:84840089-84840108 None:intergenic 50.0%
ATTCCAAAGGGAGACCCTGA+GGG + chr8_1:84840101-84840120 None:intergenic 50.0%
GTACGGACAGTGCATTCCAA+AGG + chr8_1:84840114-84840133 None:intergenic 50.0%
GTTAGTATCACTTGGGGGGA+TGG - chr8_1:84838646-84838665 Msa1221270:three_prime_UTR 50.0%
CTGTCTCTAGACAGAACCTC+TGG - chr8_1:84838706-84838725 Msa1221270:three_prime_UTR 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - chr8_1:84838792-84838811 Msa1221270:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - chr8_1:84839011-84839030 Msa1221270:CDS 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + chr8_1:84839022-84839041 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG - chr8_1:84839850-84839869 Msa1221270:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG - chr8_1:84839853-84839872 Msa1221270:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG + chr8_1:84840089-84840108 None:intergenic 50.0%
ATTCCAAAGGGAGACCCTGA+GGG + chr8_1:84840101-84840120 None:intergenic 50.0%
GTACGGACAGTGCATTCCAA+AGG + chr8_1:84840114-84840133 None:intergenic 50.0%
! CTAGACAGAACCTCTGGCTC+TGG - chr8_1:84838712-84838731 Msa1221270:three_prime_UTR 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + chr8_1:84838725-84838744 None:intergenic 55.0%
ACCGTGCCAGCTGAATTTCC+AGG + chr8_1:84838796-84838815 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + chr8_1:84839023-84839042 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG - chr8_1:84840095-84840114 Msa1221270:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG + chr8_1:84840102-84840121 None:intergenic 55.0%
! CTAGACAGAACCTCTGGCTC+TGG - chr8_1:84838712-84838731 Msa1221270:three_prime_UTR 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + chr8_1:84838725-84838744 None:intergenic 55.0%
ACCGTGCCAGCTGAATTTCC+AGG + chr8_1:84838796-84838815 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + chr8_1:84839023-84839042 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG - chr8_1:84840095-84840114 Msa1221270:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG + chr8_1:84840102-84840121 None:intergenic 55.0%
ATCACTTGGGGGGATGGGAG+AGG - chr8_1:84838652-84838671 Msa1221270:three_prime_UTR 60.0%
ATCACTTGGGGGGATGGGAG+AGG - chr8_1:84838652-84838671 Msa1221270:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84838613 84840270 84838613 ID=Msa1221270;Name=Msa1221270
chr8_1 mRNA 84838613 84840270 84838613 ID=Msa1221270-mRNA-1;Parent=Msa1221270;Name=Msa1221270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|1|1|3|127|264
chr8_1 exon 84838613 84839139 84838613 ID=Msa1221270-mRNA-1:exon:30484;Parent=Msa1221270-mRNA-1
chr8_1 exon 84839765 84839958 84839765 ID=Msa1221270-mRNA-1:exon:30483;Parent=Msa1221270-mRNA-1
chr8_1 exon 84840070 84840270 84840070 ID=Msa1221270-mRNA-1:exon:30482;Parent=Msa1221270-mRNA-1
chr8_1 CDS 84840070 84840270 84840070 ID=Msa1221270-mRNA-1:cds;Parent=Msa1221270-mRNA-1
chr8_1 CDS 84839765 84839958 84839765 ID=Msa1221270-mRNA-1:cds;Parent=Msa1221270-mRNA-1
chr8_1 CDS 84838740 84839139 84838740 ID=Msa1221270-mRNA-1:cds;Parent=Msa1221270-mRNA-1
chr8_1 three_prime_UTR 84838613 84838739 84838613 ID=Msa1221270-mRNA-1:three_prime_utr;Parent=Msa1221270-mRNA-1
Gene Sequence

>Msa1221270

ATGGTAGCTTTTGCTGGAAACTTGTATCAAGATGTTAGTATCACTTGGGGGGATGGGAGAGGTAAGATTGTGAACAATGGTCAGCTTCTAACTCTGTCTCTAGACAGAACCTCTGGCTCTGGCTTTCAATCCAATAATCAATATCTTTATGGAAAGATTGACATGCAAATTAAACTTGTTCCTGGAAATTCAGCTGGCACGTTACGTTCAGAAGGGTCATTGTGGGATGAAATAGACTTTGAATTCTTGGGAAATTTGAGTGGTGATCCTTACATAGTTCATACCAATGTGTACACCCTAGGCAAAGGGGACAGAGAACAACAATTCTATTTATGGTTTGATCCAACTACAGATTTTCATACCTATTCTTTTCTCTGGAATCCTGCACATGTTGTATTTTCTATTGATGGCAGACCAATTAGGGAATTCAAGAACTTGGAGAGTGAAGGTGTTCCATATCCAAAGAAGCAGCCAATGAGATTATATTCAAGTCTGTGGAATGCTGATGATTGGGCAACAAGAGGTGGACTTGTGAAAACAGATTGGAGTCAAGCTCCATTTACTGCTTCTTTTAGGAACTTCAAAGCCAATGGTTGTGTTTTGTCCAATGGAATTTCTTCTTGCAAATCCAACTCTTCTTCTGACAATGCTTGGTTGTATCAACAGCTAGATTCTACAAATCAGAAAAGGCTCAAATGGGTGCAGAAGAATTACATGATTTACAATTACTGCAATGACCTTAAACGATTCCCTCAGGGTCTCCCTTTGGAATGCACTGTCCGTACCAAGTCATGA

Protein sequence

>Msa1221270

MVAFAGNLYQDVSITWGDGRGKIVNNGQLLTLSLDRTSGSGFQSNNQYLYGKIDMQIKLVPGNSAGTLRSEGSLWDEIDFEFLGNLSGDPYIVHTNVYTLGKGDREQQFYLWFDPTTDFHTYSFLWNPAHVVFSIDGRPIREFKNLESEGVPYPKKQPMRLYSSLWNADDWATRGGLVKTDWSQAPFTASFRNFKANGCVLSNGISSCKSNSSSDNAWLYQQLDSTNQKRLKWVQKNYMIYNYCNDLKRFPQGLPLECTVRTKS*