Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534570 | AFK41672.1 | 92.727 | 55 | 3 | 1 | 28 | 81 | 446 | 500 | 1.69e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534570 | I3SN30 | 92.727 | 55 | 3 | 1 | 28 | 81 | 446 | 500 | 8.09e-23 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044100 | Msa0534570 | 0.822076 | 2.874608e-53 | -8.615850e-47 |
| Msa0078430 | Msa0534570 | 0.836332 | 9.955124e-57 | -8.615850e-47 |
| Msa0095540 | Msa0534570 | 0.827106 | 1.879217e-54 | -8.615850e-47 |
| Msa0096000 | Msa0534570 | 0.813974 | 1.950453e-51 | -8.615850e-47 |
| Msa0141100 | Msa0534570 | 0.852309 | 5.023648e-61 | -8.615850e-47 |
| Msa0183750 | Msa0534570 | 0.836871 | 7.256373e-57 | -8.615850e-47 |
| Msa0191040 | Msa0534570 | 0.913047 | 9.670028e-84 | -8.615850e-47 |
| Msa0206800 | Msa0534570 | 0.837642 | 4.608423e-57 | -8.615850e-47 |
| Msa0220300 | Msa0534570 | 0.845041 | 5.201736e-59 | -8.615850e-47 |
| Msa0225600 | Msa0534570 | 0.803107 | 4.081565e-49 | -8.615850e-47 |
| Msa0233340 | Msa0534570 | 0.913037 | 9.778388e-84 | -8.615850e-47 |
| Msa0236440 | Msa0534570 | 0.803415 | 3.524988e-49 | -8.615850e-47 |
| Msa0374850 | Msa0534570 | 0.848073 | 7.730877e-60 | -8.615850e-47 |
| Msa0375090 | Msa0534570 | 0.850225 | 1.948161e-60 | -8.615850e-47 |
| Msa0470340 | Msa0534570 | 0.863651 | 2.138275e-64 | -8.615850e-47 |
| Msa0470860 | Msa0534570 | 0.809907 | 1.500414e-50 | -8.615850e-47 |
| Msa0480950 | Msa0534570 | 0.849335 | 3.455039e-60 | -8.615850e-47 |
| Msa0481110 | Msa0534570 | 0.841183 | 5.547117e-58 | -8.615850e-47 |
| Msa0251240 | Msa0534570 | 0.860700 | 1.719942e-63 | -8.615850e-47 |
| Msa0266450 | Msa0534570 | 0.811795 | 5.855314e-51 | -8.615850e-47 |
| Msa0288190 | Msa0534570 | 0.836675 | 8.144248e-57 | -8.615850e-47 |
| Msa0288200 | Msa0534570 | 0.821836 | 3.267092e-53 | -8.615850e-47 |
| Msa0301200 | Msa0534570 | 0.830533 | 2.784021e-55 | -8.615850e-47 |
| Msa0311690 | Msa0534570 | 0.892480 | 1.527158e-74 | -8.615850e-47 |
| Msa0315250 | Msa0534570 | 0.813654 | 2.294796e-51 | -8.615850e-47 |
| Msa0326540 | Msa0534570 | 0.845004 | 5.319551e-59 | -8.615850e-47 |
| Msa0334500 | Msa0534570 | 0.800185 | 1.622672e-48 | -8.615850e-47 |
| Msa0520510 | Msa0534570 | 0.836919 | 7.056797e-57 | -8.615850e-47 |
| Msa0531430 | Msa0534570 | 0.899078 | 2.828986e-77 | -8.615850e-47 |
| Msa0534570 | Msa0534590 | 0.881885 | 1.654364e-70 | -8.615850e-47 |
| Msa0534570 | Msa0565600 | 0.823325 | 1.471552e-53 | -8.615850e-47 |
| Msa0534570 | Msa0590800 | 0.876357 | 1.488706e-68 | -8.615850e-47 |
| Msa0534570 | Msa0611380 | 0.881952 | 1.564278e-70 | -8.615850e-47 |
| Msa0534570 | Msa0618220 | 0.807582 | 4.710335e-50 | -8.615850e-47 |
| Msa0534570 | Msa0619990 | 0.806129 | 9.554358e-50 | -8.615850e-47 |
| Msa0534570 | Msa0622410 | 0.803960 | 2.716932e-49 | -8.615850e-47 |
| Msa0534570 | Msa0628640 | 0.890743 | 7.472912e-74 | -8.615850e-47 |
| Msa0534570 | Msa0631120 | 0.883604 | 3.898930e-71 | -8.615850e-47 |
| Msa0534570 | Msa0666030 | 0.884369 | 2.034344e-71 | -8.615850e-47 |
| Msa0534570 | Msa0669340 | 0.879863 | 8.804175e-70 | -8.615850e-47 |
| Msa0534570 | Msa0701970 | 0.812584 | 3.939307e-51 | -8.615850e-47 |
| Msa0534570 | Msa0716450 | 0.843245 | 1.577538e-58 | -8.615850e-47 |
| Msa0534570 | Msa0717260 | 0.864565 | 1.109616e-64 | -8.615850e-47 |
| Msa0534570 | Msa0734230 | 0.817661 | 2.937718e-52 | -8.615850e-47 |
| Msa0534570 | Msa0754370 | 0.803921 | 2.767691e-49 | -8.615850e-47 |
| Msa0534570 | Msa0758320 | 0.847103 | 1.428962e-59 | -8.615850e-47 |
| Msa0534570 | Msa0775440 | 0.826059 | 3.338217e-54 | -8.615850e-47 |
| Msa0534570 | Msa0795690 | 0.803340 | 3.652462e-49 | -8.615850e-47 |
| Msa0534570 | Msa0799030 | 0.847054 | 1.473474e-59 | -8.615850e-47 |
| Msa0534570 | Msa0799700 | 0.825760 | 3.931500e-54 | -8.615850e-47 |
| Msa0534570 | Msa0810020 | 0.827603 | 1.428442e-54 | -8.615850e-47 |
| Msa0534570 | Msa0812820 | 0.858499 | 7.898896e-63 | -8.615850e-47 |
| Msa0534570 | Msa0833340 | 0.809069 | 2.270651e-50 | -8.615850e-47 |
| Msa0534570 | Msa0837440 | 0.861838 | 7.745218e-64 | -8.615850e-47 |
| Msa0534570 | Msa0837980 | 0.847372 | 1.206047e-59 | -8.615850e-47 |
| Msa0534570 | Msa0853320 | 0.850511 | 1.619672e-60 | -8.615850e-47 |
| Msa0534570 | Msa0880710 | 0.834362 | 3.132138e-56 | -8.615850e-47 |
| Msa0534570 | Msa0885060 | 0.820313 | 7.326973e-53 | -8.615850e-47 |
| Msa0534570 | Msa0979510 | 0.810510 | 1.112388e-50 | -8.615850e-47 |
| Msa0534570 | Msa1002620 | 0.840421 | 8.785406e-58 | -8.615850e-47 |
| Msa0534570 | Msa1010110 | 0.810809 | 9.584029e-51 | -8.615850e-47 |
| Msa0534570 | Msa1033560 | 0.838057 | 3.604369e-57 | -8.615850e-47 |
| Msa0534570 | Msa1073340 | 0.801959 | 7.038728e-49 | -8.615850e-47 |
| Msa0534570 | Msa1073350 | 0.824197 | 9.198626e-54 | -8.615850e-47 |
| Msa0534570 | Msa1113850 | 0.856133 | 3.953944e-62 | -8.615850e-47 |
| Msa0534570 | Msa1160400 | 0.844087 | 9.391582e-59 | -8.615850e-47 |
| Msa0534570 | Msa1190120 | 0.807269 | 5.490067e-50 | -8.615850e-47 |
| Msa0534570 | Msa1203000 | 0.840032 | 1.110027e-57 | -8.615850e-47 |
| Msa0534570 | Msa1211550 | 0.831922 | 1.267906e-55 | -8.615850e-47 |
| Msa0534570 | Msa1217940 | 0.850755 | 1.383019e-60 | -8.615850e-47 |
| Msa0534570 | Msa1218480 | 0.836108 | 1.135077e-56 | -8.615850e-47 |
| Msa0534570 | Msa1219260 | 0.825144 | 5.501104e-54 | -8.615850e-47 |
| Msa0534570 | Msa1227970 | 0.800169 | 1.634665e-48 | -8.615850e-47 |
| Msa0534570 | Msa1254700 | 0.809141 | 2.191023e-50 | -8.615850e-47 |
| Msa0534570 | Msa1255280 | 0.832084 | 1.156889e-55 | -8.615850e-47 |
| Msa0534570 | Msa1258050 | 0.841930 | 3.523755e-58 | -8.615850e-47 |
| Msa0534570 | Msa1266960 | 0.820659 | 6.103730e-53 | -8.615850e-47 |
| Msa0534570 | Msa1339940 | 0.831551 | 1.565771e-55 | -8.615850e-47 |
| Msa0534570 | Msa1345420 | 0.816933 | 4.283775e-52 | -8.615850e-47 |
| Msa0534570 | Msa1369700 | 0.827533 | 1.484544e-54 | -8.615850e-47 |
| Msa0534570 | Msa1390850 | 0.801735 | 7.827019e-49 | -8.615850e-47 |
| Msa0534570 | Msa1395870 | 0.813450 | 2.544093e-51 | -8.615850e-47 |
| Msa0534570 | Msa1397250 | 0.808983 | 2.368725e-50 | -8.615850e-47 |
| Msa0534570 | Msa1399560 | 0.829114 | 6.169024e-55 | -8.615850e-47 |
| Msa0534570 | Msa1401150 | 0.809433 | 1.896445e-50 | -8.615850e-47 |
| Msa0534570 | Msa1437190 | 0.834476 | 2.932550e-56 | -8.615850e-47 |
| Msa0534570 | Msa1440340 | 0.834997 | 2.168295e-56 | -8.615850e-47 |
| Msa0534570 | Msa1443840 | 0.819963 | 8.810283e-53 | -8.615850e-47 |
| Msa0534570 | Msa1449730 | 0.810176 | 1.312615e-50 | -8.615850e-47 |
| Msa0534570 | Msa1452060 | 0.833243 | 5.965173e-56 | -8.615850e-47 |
| Msa0534570 | Msa1460380 | 0.840775 | 7.095432e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534570 | MtrunA17_Chr4g0008511 | 92.727 | 55 | 3 | 1 | 28 | 81 | 446 | 500 | 1.59e-26 | 100 |
| Msa0534570 | MtrunA17_Chr4g0008491 | 66.667 | 51 | 17 | 0 | 28 | 78 | 260 | 310 | 4.80e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCCTTTGGATTCTTA+AGG | 0.299759 | 4_1:+10075057 | None:intergenic |
| ACCGTCTGTCAAAGCCTCTT+TGG | 0.309921 | 4_1:+10075091 | None:intergenic |
| CAAGCTGTAACTTCTTCCTT+TGG | 0.353157 | 4_1:+10075047 | None:intergenic |
| GAATGTACCATTGGATGATT+TGG | 0.353597 | 4_1:-10075557 | Msa0534570:CDS |
| AGAGATGTTGGATAAGGAAA+TGG | 0.479902 | 4_1:-10076074 | None:intergenic |
| AAGTCAAAGAAGCTCCCAAC+AGG | 0.484404 | 4_1:+10075117 | None:intergenic |
| TTCTTTGACTTCTTCCAAAG+AGG | 0.487396 | 4_1:-10075105 | Msa0534570:CDS |
| TGCAAAAGAGATGTTGGATA+AGG | 0.487646 | 4_1:-10076080 | None:intergenic |
| TGTCAGGCACTGAACCTGTT+GGG | 0.511727 | 4_1:-10075131 | Msa0534570:intron |
| TCCAAAGAGGCTTTGACAGA+CGG | 0.518614 | 4_1:-10075092 | Msa0534570:CDS |
| GAGGAGCATATAGTGAGCAT+TGG | 0.518756 | 4_1:-10075535 | Msa0534570:CDS |
| CTTCCTTTGGATTCTTAAGG+AGG | 0.541667 | 4_1:+10075060 | None:intergenic |
| TGGAAAATCAGAGTGAAGAG+AGG | 0.542968 | 4_1:-10076051 | Msa0534570:CDS |
| GCACAAGATGAATGTACCAT+TGG | 0.543115 | 4_1:-10075566 | Msa0534570:intron |
| TGTACCATTGGATGATTTGG+AGG | 0.570776 | 4_1:-10075554 | Msa0534570:CDS |
| GATGTTGGATAAGGAAATGG+TGG | 0.572311 | 4_1:-10076071 | Msa0534570:CDS |
| TTGTCAGGCACTGAACCTGT+TGG | 0.605048 | 4_1:-10075132 | Msa0534570:intron |
| TGCTCCTCCAAATCATCCAA+TGG | 0.607505 | 4_1:+10075550 | None:intergenic |
| CTACCTCCTTAAGAATCCAA+AGG | 0.611859 | 4_1:-10075063 | Msa0534570:CDS |
| GATTGATGAGAGAGAACGAA+GGG | 0.631467 | 4_1:-10076005 | Msa0534570:intron |
| AGTGAGCATTGGAGAAACAG+AGG | 0.672512 | 4_1:-10075524 | Msa0534570:intron |
| TGATTGATGAGAGAGAACGA+AGG | 0.727933 | 4_1:-10076006 | Msa0534570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAATTATTTTTTAA+TGG | - | chr4_1:10075406-10075425 | Msa0534570:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr4_1:10075827-10075846 | Msa0534570:intron | 0.0% |
| !!! | AAAATAAAATTATTTTTTAA+TGG | - | chr4_1:10075406-10075425 | Msa0534570:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr4_1:10075827-10075846 | Msa0534570:intron | 0.0% |
| !! | AATCTTAATAATATACAAAT+GGG | + | chr4_1:10075503-10075522 | None:intergenic | 10.0% |
| !!! | TTTTCTTGTTAATTTTTTTT+GGG | + | chr4_1:10075765-10075784 | None:intergenic | 10.0% |
| !!! | ATTTTCTTGTTAATTTTTTT+TGG | + | chr4_1:10075766-10075785 | None:intergenic | 10.0% |
| !! | AATCTTAATAATATACAAAT+GGG | + | chr4_1:10075503-10075522 | None:intergenic | 10.0% |
| !!! | TTTTCTTGTTAATTTTTTTT+GGG | + | chr4_1:10075765-10075784 | None:intergenic | 10.0% |
| !!! | ATTTTCTTGTTAATTTTTTT+TGG | + | chr4_1:10075766-10075785 | None:intergenic | 10.0% |
| !! | ATCTTAATAATATACAAATG+GGG | + | chr4_1:10075502-10075521 | None:intergenic | 15.0% |
| !! | GAATCTTAATAATATACAAA+TGG | + | chr4_1:10075504-10075523 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCTTCCTTAAT+CGG | - | chr4_1:10075713-10075732 | Msa0534570:intron | 15.0% |
| !! | TAACAAGAAAATAGATATTA+AGG | - | chr4_1:10075774-10075793 | Msa0534570:intron | 15.0% |
| !! | CATTGATATATTATAAAACT+AGG | - | chr4_1:10075899-10075918 | Msa0534570:intron | 15.0% |
| !! | ATCTTAATAATATACAAATG+GGG | + | chr4_1:10075502-10075521 | None:intergenic | 15.0% |
| !! | GAATCTTAATAATATACAAA+TGG | + | chr4_1:10075504-10075523 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCTTCCTTAAT+CGG | - | chr4_1:10075713-10075732 | Msa0534570:intron | 15.0% |
| !! | TAACAAGAAAATAGATATTA+AGG | - | chr4_1:10075774-10075793 | Msa0534570:intron | 15.0% |
| !! | CATTGATATATTATAAAACT+AGG | - | chr4_1:10075899-10075918 | Msa0534570:intron | 15.0% |
| !! | GAAATAAAATGTTAATAGTG+AGG | - | chr4_1:10075185-10075204 | Msa0534570:intron | 20.0% |
| !! | TTGAAATGAATAATAGAGAA+AGG | - | chr4_1:10075225-10075244 | Msa0534570:intron | 20.0% |
| !!! | ATTTGAATTTTGAATTGAAG+AGG | - | chr4_1:10075326-10075345 | Msa0534570:intron | 20.0% |
| !!! | TTTGAATTTTGAATTGAAGA+GGG | - | chr4_1:10075327-10075346 | Msa0534570:intron | 20.0% |
| !! | TGATATATTATAAAACTAGG+TGG | - | chr4_1:10075902-10075921 | Msa0534570:intron | 20.0% |
| !! | GAAATAAAATGTTAATAGTG+AGG | - | chr4_1:10075185-10075204 | Msa0534570:intron | 20.0% |
| !! | TTGAAATGAATAATAGAGAA+AGG | - | chr4_1:10075225-10075244 | Msa0534570:intron | 20.0% |
| !!! | ATTTGAATTTTGAATTGAAG+AGG | - | chr4_1:10075326-10075345 | Msa0534570:intron | 20.0% |
| !!! | TTTGAATTTTGAATTGAAGA+GGG | - | chr4_1:10075327-10075346 | Msa0534570:intron | 20.0% |
| !! | TGATATATTATAAAACTAGG+TGG | - | chr4_1:10075902-10075921 | Msa0534570:intron | 20.0% |
| ! | AAAGAGAGAAACGAAATAAA+AGG | - | chr4_1:10075147-10075166 | Msa0534570:intron | 25.0% |
| ! | TGTTAATAGTGAGGAAAAAA+AGG | - | chr4_1:10075194-10075213 | Msa0534570:intron | 25.0% |
| ! | AAATTGAAAGTGATGTTTGT+TGG | - | chr4_1:10075256-10075275 | Msa0534570:intron | 25.0% |
| ! | CTTGATACTTGGATATTTAA+TGG | - | chr4_1:10075663-10075682 | Msa0534570:intron | 25.0% |
| ! | TTAATTATCTCTACATTGTC+AGG | - | chr4_1:10075969-10075988 | Msa0534570:intron | 25.0% |
| ! | AAAGAGAGAAACGAAATAAA+AGG | - | chr4_1:10075147-10075166 | Msa0534570:intron | 25.0% |
| ! | TGTTAATAGTGAGGAAAAAA+AGG | - | chr4_1:10075194-10075213 | Msa0534570:intron | 25.0% |
| ! | AAATTGAAAGTGATGTTTGT+TGG | - | chr4_1:10075256-10075275 | Msa0534570:intron | 25.0% |
| ! | CTTGATACTTGGATATTTAA+TGG | - | chr4_1:10075663-10075682 | Msa0534570:intron | 25.0% |
| ! | TTAATTATCTCTACATTGTC+AGG | - | chr4_1:10075969-10075988 | Msa0534570:intron | 25.0% |
| GTTGGTATAAGAGAAAAAGT+AGG | - | chr4_1:10075274-10075293 | Msa0534570:intron | 30.0% | |
| GTATAAGAGAAAAAGTAGGA+GGG | - | chr4_1:10075278-10075297 | Msa0534570:intron | 30.0% | |
| TATTGTGTGAATGCTTAAAG+TGG | - | chr4_1:10075381-10075400 | Msa0534570:intron | 30.0% | |
| !! | TGCTTAGAATTTTGACACAT+TGG | - | chr4_1:10075445-10075464 | Msa0534570:intron | 30.0% |
| ! | TCACTTGCTTCTAGTTATAA+AGG | + | chr4_1:10075944-10075963 | Msa0534580:five_prime_UTR | 30.0% |
| GTTGGTATAAGAGAAAAAGT+AGG | - | chr4_1:10075274-10075293 | Msa0534570:intron | 30.0% | |
| GTATAAGAGAAAAAGTAGGA+GGG | - | chr4_1:10075278-10075297 | Msa0534570:intron | 30.0% | |
| TATTGTGTGAATGCTTAAAG+TGG | - | chr4_1:10075381-10075400 | Msa0534570:intron | 30.0% | |
| !! | TGCTTAGAATTTTGACACAT+TGG | - | chr4_1:10075445-10075464 | Msa0534570:intron | 30.0% |
| ! | TCACTTGCTTCTAGTTATAA+AGG | + | chr4_1:10075944-10075963 | Msa0534580:five_prime_UTR | 30.0% |
| AACGAAATAAAAGGAGTGAG+AGG | - | chr4_1:10075156-10075175 | Msa0534570:intron | 35.0% | |
| GGTATAAGAGAAAAAGTAGG+AGG | - | chr4_1:10075277-10075296 | Msa0534570:intron | 35.0% | |
| GAATGTACCATTGGATGATT+TGG | - | chr4_1:10075559-10075578 | Msa0534570:CDS | 35.0% | |
| TCCTTGCAAATCTTGATACT+TGG | - | chr4_1:10075652-10075671 | Msa0534570:intron | 35.0% | |
| TCCAAGTATCAAGATTTGCA+AGG | + | chr4_1:10075656-10075675 | None:intergenic | 35.0% | |
| TTAAGCTAACTAGTGTCTCA+GGG | + | chr4_1:10075742-10075761 | None:intergenic | 35.0% | |
| ! | TTCTTTGACTTCTTCCAAAG+AGG | - | chr4_1:10076011-10076030 | Msa0534570:CDS | 35.0% |
| CTTCTTCCTTTGGATTCTTA+AGG | + | chr4_1:10076062-10076081 | Msa0534580:five_prime_UTR | 35.0% | |
| AACGAAATAAAAGGAGTGAG+AGG | - | chr4_1:10075156-10075175 | Msa0534570:intron | 35.0% | |
| GGTATAAGAGAAAAAGTAGG+AGG | - | chr4_1:10075277-10075296 | Msa0534570:intron | 35.0% | |
| GAATGTACCATTGGATGATT+TGG | - | chr4_1:10075559-10075578 | Msa0534570:CDS | 35.0% | |
| TCCTTGCAAATCTTGATACT+TGG | - | chr4_1:10075652-10075671 | Msa0534570:intron | 35.0% | |
| TCCAAGTATCAAGATTTGCA+AGG | + | chr4_1:10075656-10075675 | None:intergenic | 35.0% | |
| TTAAGCTAACTAGTGTCTCA+GGG | + | chr4_1:10075742-10075761 | None:intergenic | 35.0% | |
| ! | TTCTTTGACTTCTTCCAAAG+AGG | - | chr4_1:10076011-10076030 | Msa0534570:CDS | 35.0% |
| CTTCTTCCTTTGGATTCTTA+AGG | + | chr4_1:10076062-10076081 | Msa0534580:five_prime_UTR | 35.0% | |
| TGGAAAATCAGAGTGAAGAG+AGG | - | chr4_1:10075065-10075084 | Msa0534570:CDS | 40.0% | |
| TGATTGATGAGAGAGAACGA+AGG | - | chr4_1:10075110-10075129 | Msa0534570:CDS | 40.0% | |
| GATTGATGAGAGAGAACGAA+GGG | - | chr4_1:10075111-10075130 | Msa0534570:CDS | 40.0% | |
| GAAAAAGTAGGAGGGAAAGA+AGG | - | chr4_1:10075286-10075305 | Msa0534570:intron | 40.0% | |
| GCACAAGATGAATGTACCAT+TGG | - | chr4_1:10075550-10075569 | Msa0534570:CDS | 40.0% | |
| ! | TGTACCATTGGATGATTTGG+AGG | - | chr4_1:10075562-10075581 | Msa0534570:CDS | 40.0% |
| GTTAAGCTAACTAGTGTCTC+AGG | + | chr4_1:10075743-10075762 | None:intergenic | 40.0% | |
| CTACCTCCTTAAGAATCCAA+AGG | - | chr4_1:10076053-10076072 | Msa0534570:CDS | 40.0% | |
| CTTCCTTTGGATTCTTAAGG+AGG | + | chr4_1:10076059-10076078 | Msa0534580:five_prime_UTR | 40.0% | |
| CAAGCTGTAACTTCTTCCTT+TGG | + | chr4_1:10076072-10076091 | Msa0534580:five_prime_UTR | 40.0% | |
| TGGAAAATCAGAGTGAAGAG+AGG | - | chr4_1:10075065-10075084 | Msa0534570:CDS | 40.0% | |
| TGATTGATGAGAGAGAACGA+AGG | - | chr4_1:10075110-10075129 | Msa0534570:CDS | 40.0% | |
| GATTGATGAGAGAGAACGAA+GGG | - | chr4_1:10075111-10075130 | Msa0534570:CDS | 40.0% | |
| GAAAAAGTAGGAGGGAAAGA+AGG | - | chr4_1:10075286-10075305 | Msa0534570:intron | 40.0% | |
| GCACAAGATGAATGTACCAT+TGG | - | chr4_1:10075550-10075569 | Msa0534570:CDS | 40.0% | |
| ! | TGTACCATTGGATGATTTGG+AGG | - | chr4_1:10075562-10075581 | Msa0534570:CDS | 40.0% |
| GTTAAGCTAACTAGTGTCTC+AGG | + | chr4_1:10075743-10075762 | None:intergenic | 40.0% | |
| CTACCTCCTTAAGAATCCAA+AGG | - | chr4_1:10076053-10076072 | Msa0534570:CDS | 40.0% | |
| CTTCCTTTGGATTCTTAAGG+AGG | + | chr4_1:10076059-10076078 | Msa0534580:five_prime_UTR | 40.0% | |
| CAAGCTGTAACTTCTTCCTT+TGG | + | chr4_1:10076072-10076091 | Msa0534580:five_prime_UTR | 40.0% | |
| TGCTCCTCCAAATCATCCAA+TGG | + | chr4_1:10075569-10075588 | None:intergenic | 45.0% | |
| ! | GAGGAGCATATAGTGAGCAT+TGG | - | chr4_1:10075581-10075600 | Msa0534570:intron | 45.0% |
| !! | AGTGAGCATTGGAGAAACAG+AGG | - | chr4_1:10075592-10075611 | Msa0534570:intron | 45.0% |
| AAGTCAAAGAAGCTCCCAAC+AGG | + | chr4_1:10076002-10076021 | Msa0534580:five_prime_UTR | 45.0% | |
| ! | TCCAAAGAGGCTTTGACAGA+CGG | - | chr4_1:10076024-10076043 | Msa0534570:CDS | 45.0% |
| TGCTCCTCCAAATCATCCAA+TGG | + | chr4_1:10075569-10075588 | None:intergenic | 45.0% | |
| ! | GAGGAGCATATAGTGAGCAT+TGG | - | chr4_1:10075581-10075600 | Msa0534570:intron | 45.0% |
| !! | AGTGAGCATTGGAGAAACAG+AGG | - | chr4_1:10075592-10075611 | Msa0534570:intron | 45.0% |
| AAGTCAAAGAAGCTCCCAAC+AGG | + | chr4_1:10076002-10076021 | Msa0534580:five_prime_UTR | 45.0% | |
| ! | TCCAAAGAGGCTTTGACAGA+CGG | - | chr4_1:10076024-10076043 | Msa0534570:CDS | 45.0% |
| ! | TGTCTCAGGGACACCGATTA+AGG | + | chr4_1:10075729-10075748 | None:intergenic | 50.0% |
| !! | TTGTCAGGCACTGAACCTGT+TGG | - | chr4_1:10075984-10076003 | Msa0534570:intron | 50.0% |
| !! | TGTCAGGCACTGAACCTGTT+GGG | - | chr4_1:10075985-10076004 | Msa0534570:intron | 50.0% |
| ACCGTCTGTCAAAGCCTCTT+TGG | + | chr4_1:10076028-10076047 | Msa0534580:five_prime_UTR | 50.0% | |
| ! | TGTCTCAGGGACACCGATTA+AGG | + | chr4_1:10075729-10075748 | None:intergenic | 50.0% |
| !! | TTGTCAGGCACTGAACCTGT+TGG | - | chr4_1:10075984-10076003 | Msa0534570:intron | 50.0% |
| !! | TGTCAGGCACTGAACCTGTT+GGG | - | chr4_1:10075985-10076004 | Msa0534570:intron | 50.0% |
| ACCGTCTGTCAAAGCCTCTT+TGG | + | chr4_1:10076028-10076047 | Msa0534580:five_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 10075046 | 10076092 | 10075046 | ID=Msa0534570;Name=Msa0534570 |
| chr4_1 | mRNA | 10075046 | 10076092 | 10075046 | ID=Msa0534570-mRNA-1;Parent=Msa0534570;Name=Msa0534570-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.66|1|1|3|0|81 |
| chr4_1 | exon | 10076006 | 10076092 | 10076006 | ID=Msa0534570-mRNA-1:exon:3249;Parent=Msa0534570-mRNA-1 |
| chr4_1 | exon | 10075525 | 10075581 | 10075525 | ID=Msa0534570-mRNA-1:exon:3248;Parent=Msa0534570-mRNA-1 |
| chr4_1 | exon | 10075046 | 10075147 | 10075046 | ID=Msa0534570-mRNA-1:exon:3247;Parent=Msa0534570-mRNA-1 |
| chr4_1 | CDS | 10076006 | 10076092 | 10076006 | ID=Msa0534570-mRNA-1:cds;Parent=Msa0534570-mRNA-1 |
| chr4_1 | CDS | 10075525 | 10075581 | 10075525 | ID=Msa0534570-mRNA-1:cds;Parent=Msa0534570-mRNA-1 |
| chr4_1 | CDS | 10075046 | 10075147 | 10075046 | ID=Msa0534570-mRNA-1:cds;Parent=Msa0534570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
