Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648670 | AES89653.1 | 93.103 | 290 | 9 | 1 | 1 | 279 | 4 | 293 | 0.0 | 539 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648670 | sp|Q9ZNT7|PHB2_ARATH | 78.246 | 285 | 49 | 2 | 1 | 274 | 1 | 283 | 1.61e-156 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016350 | Msa0648670 | 0.804363 | 2.239171e-49 | -8.615850e-47 |
| Msa0040220 | Msa0648670 | 0.817195 | 3.740364e-52 | -8.615850e-47 |
| Msa0605890 | Msa0648670 | 0.800651 | 1.304318e-48 | -8.615850e-47 |
| Msa0610000 | Msa0648670 | 0.801831 | 7.477300e-49 | -8.615850e-47 |
| Msa0643960 | Msa0648670 | 0.800081 | 1.703352e-48 | -8.615850e-47 |
| Msa0648620 | Msa0648670 | 0.987308 | 8.564329e-170 | -8.615850e-47 |
| Msa0648670 | Msa0650370 | 0.814134 | 1.798155e-51 | -8.615850e-47 |
| Msa0648670 | Msa0790450 | 0.810977 | 8.813700e-51 | -8.615850e-47 |
| Msa0648670 | Msa1040160 | 0.810673 | 1.025277e-50 | -8.615850e-47 |
| Msa0648670 | Msa1041680 | 0.808455 | 3.070571e-50 | -8.615850e-47 |
| Msa0648670 | Msa1083370 | 0.816150 | 6.415685e-52 | -8.615850e-47 |
| Msa0648670 | Msa1106870 | 0.812908 | 3.346202e-51 | -8.615850e-47 |
| Msa0648670 | Msa1116940 | 0.914053 | 3.008171e-84 | -8.615850e-47 |
| Msa0648670 | Msa1136880 | 0.904075 | 1.792436e-79 | -8.615850e-47 |
| Msa0648670 | Msa1136980 | 0.851018 | 1.166496e-60 | -8.615850e-47 |
| Msa0648670 | Msa1166570 | 0.805457 | 1.322868e-49 | -8.615850e-47 |
| Msa0648670 | Msa1169940 | 0.832911 | 7.215683e-56 | -8.615850e-47 |
| Msa0648670 | Msa1218610 | 0.804292 | 2.317196e-49 | -8.615850e-47 |
| Msa0648670 | Msa1235950 | 0.810132 | 1.341964e-50 | -8.615850e-47 |
| Msa0648670 | Msa1235980 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0648670 | Msa1237040 | 0.873709 | 1.191759e-67 | -8.615850e-47 |
| Msa0648670 | Msa1258540 | 0.830720 | 2.504940e-55 | -8.615850e-47 |
| Msa0648670 | Msa1278130 | 0.839441 | 1.582027e-57 | -8.615850e-47 |
| Msa0648670 | Msa1284060 | 0.825774 | 3.901512e-54 | -8.615850e-47 |
| Msa0648670 | Msa1317390 | 0.843316 | 1.510295e-58 | -8.615850e-47 |
| Msa0648670 | Msa1332230 | 0.819555 | 1.092131e-52 | -8.615850e-47 |
| Msa0648670 | Msa1341780 | 0.855185 | 7.473944e-62 | -8.615850e-47 |
| Msa0648670 | Msa1344160 | 0.810262 | 1.258269e-50 | -8.615850e-47 |
| Msa0648670 | Msa1344190 | 0.810486 | 1.125617e-50 | -8.615850e-47 |
| Msa0648670 | Msa1371410 | 0.836659 | 8.222599e-57 | -8.615850e-47 |
| Msa0648670 | Msa1385750 | 0.830375 | 3.042157e-55 | -8.615850e-47 |
| Msa0648670 | Msa1409220 | 0.832631 | 8.466566e-56 | -8.615850e-47 |
| Msa0648670 | Msa1415620 | 0.845885 | 3.071250e-59 | -8.615850e-47 |
| Msa0648670 | Msa1433590 | 0.808314 | 3.290837e-50 | -8.615850e-47 |
| Msa0648670 | Msa1434120 | 0.821869 | 3.209878e-53 | -8.615850e-47 |
| Msa0648670 | Msa1444240 | 0.804343 | 2.260513e-49 | -8.615850e-47 |
| Msa0648670 | Msa1450560 | 0.812793 | 3.545322e-51 | -8.615850e-47 |
| Msa0648670 | Msa1456160 | 0.835930 | 1.259318e-56 | -8.615850e-47 |
| Msa0648670 | Msa1465700 | 0.812142 | 4.919822e-51 | -8.615850e-47 |
| Msa0136400 | Msa0648670 | 0.807022 | 6.191131e-50 | -8.615850e-47 |
| Msa0144810 | Msa0648670 | 0.811267 | 7.624620e-51 | -8.615850e-47 |
| Msa0192300 | Msa0648670 | 0.800318 | 1.524527e-48 | -8.615850e-47 |
| Msa0426090 | Msa0648670 | 0.820002 | 8.632060e-53 | -8.615850e-47 |
| Msa0426250 | Msa0648670 | 0.818894 | 1.544681e-52 | -8.615850e-47 |
| Msa0432750 | Msa0648670 | 0.849611 | 2.894026e-60 | -8.615850e-47 |
| Msa0472480 | Msa0648670 | 0.819092 | 1.392764e-52 | -8.615850e-47 |
| Msa0475810 | Msa0648670 | 0.808312 | 3.294909e-50 | -8.615850e-47 |
| Msa0479980 | Msa0648670 | 0.847631 | 1.023483e-59 | -8.615850e-47 |
| Msa0313060 | Msa0648670 | 0.806103 | 9.678120e-50 | -8.615850e-47 |
| Msa0340560 | Msa0648670 | 0.816713 | 4.799240e-52 | -8.615850e-47 |
| Msa0528750 | Msa0648670 | 0.818821 | 1.605043e-52 | -8.615850e-47 |
| Msa0528820 | Msa0648670 | 0.839031 | 2.020376e-57 | -8.615850e-47 |
| Msa0547920 | Msa0648670 | 0.803002 | 4.291011e-49 | -8.615850e-47 |
| Msa0554210 | Msa0648670 | 0.840383 | 8.988012e-58 | -8.615850e-47 |
| Msa0597240 | Msa0648670 | 0.817333 | 3.481334e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648670 | MtrunA17_Chr4g0040101 | 92.982 | 285 | 9 | 1 | 6 | 279 | 1 | 285 | 0.0 | 526 |
| Msa0648670 | MtrunA17_Chr2g0325011 | 83.571 | 280 | 35 | 1 | 10 | 278 | 5 | 284 | 1.29e-168 | 468 |
| Msa0648670 | MtrunA17_Chr3g0079011 | 49.811 | 265 | 120 | 3 | 17 | 268 | 10 | 274 | 8.98e-85 | 255 |
| Msa0648670 | MtrunA17_Chr8g0356051 | 52.049 | 244 | 105 | 2 | 28 | 259 | 22 | 265 | 4.34e-84 | 253 |
| Msa0648670 | MtrunA17_Chr5g0444361 | 31.013 | 158 | 97 | 2 | 28 | 174 | 22 | 178 | 1.44e-21 | 89.4 |
| Msa0648670 | MtrunA17_Chr6g0449171 | 34.483 | 145 | 57 | 1 | 87 | 231 | 1 | 107 | 2.36e-18 | 78.6 |
| Msa0648670 | MtrunA17_Chr5g0444371 | 34.146 | 123 | 66 | 1 | 52 | 174 | 47 | 154 | 2.24e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648670 | AT1G03860.1 | 78.246 | 285 | 49 | 2 | 1 | 274 | 1 | 283 | 1.63e-157 | 440 |
| Msa0648670 | AT1G03860.3 | 78.246 | 285 | 49 | 2 | 1 | 274 | 1 | 283 | 1.63e-157 | 440 |
| Msa0648670 | AT4G28510.1 | 80.836 | 287 | 44 | 1 | 3 | 278 | 1 | 287 | 2.81e-157 | 439 |
| Msa0648670 | AT2G20530.2 | 77.241 | 290 | 51 | 2 | 1 | 279 | 1 | 286 | 1.18e-155 | 435 |
| Msa0648670 | AT2G20530.1 | 77.241 | 290 | 51 | 2 | 1 | 279 | 1 | 286 | 1.18e-155 | 435 |
| Msa0648670 | AT5G44140.1 | 71.223 | 278 | 69 | 1 | 3 | 269 | 1 | 278 | 2.30e-141 | 399 |
| Msa0648670 | AT1G03860.2 | 85.780 | 218 | 31 | 0 | 57 | 274 | 1 | 218 | 1.16e-129 | 367 |
| Msa0648670 | AT3G27280.1 | 48.302 | 265 | 124 | 3 | 17 | 268 | 11 | 275 | 4.75e-83 | 251 |
| Msa0648670 | AT3G27280.2 | 48.302 | 265 | 124 | 3 | 17 | 268 | 11 | 275 | 4.75e-83 | 251 |
| Msa0648670 | AT5G40770.1 | 49.804 | 255 | 116 | 2 | 17 | 259 | 11 | 265 | 1.50e-81 | 247 |
| Msa0648670 | AT5G14300.1 | 44.068 | 236 | 94 | 3 | 36 | 259 | 22 | 231 | 9.71e-65 | 203 |
Find 77 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATCAATTGAGCACTTT+TGG | 0.231448 | 4_3:+55124778 | None:intergenic |
| CTTGGTGGACTTGCTGTCTA+TGG | 0.237252 | 4_3:-55128052 | Msa0648670:CDS |
| TTGATTAAAGTTAGCATTCT+TGG | 0.252178 | 4_3:-55128070 | Msa0648670:CDS |
| GAATCTCCAGGATTTAAAAT+TGG | 0.279612 | 4_3:-55124633 | Msa0648670:CDS |
| TTCGATAGACCGTTGGTAAT+TGG | 0.291628 | 4_3:+55125767 | None:intergenic |
| CAGCTTTGCAAACTGAAATA+TGG | 0.292358 | 4_3:-55124494 | Msa0648670:three_prime_UTR |
| GAGATAAGGGATGTTAAATA+AGG | 0.302415 | 4_3:-55124425 | Msa0648670:three_prime_UTR |
| CATTTAGTGGAGAGCACTTC+AGG | 0.305741 | 4_3:-55126754 | Msa0648670:CDS |
| CATCCAGTGCAATGTTGAAT+TGG | 0.307846 | 4_3:+55125402 | None:intergenic |
| CCACCACCACCGGGAACCTT+TGG | 0.317038 | 4_3:+55128103 | None:intergenic |
| TCTATCACAAGTTTGACTTT+TGG | 0.348882 | 4_3:-55125374 | Msa0648670:CDS |
| ATCATAATATGTGTTCCTTC+AGG | 0.372217 | 4_3:+55126823 | None:intergenic |
| TGCATTCAAGAAAACCTTGT+TGG | 0.399906 | 4_3:+55124670 | None:intergenic |
| GTCTATAAATGCAGGGTTGT+TGG | 0.403645 | 4_3:+55124745 | None:intergenic |
| ATGGAACATTTGAGAGATAA+GGG | 0.407423 | 4_3:-55124438 | Msa0648670:three_prime_UTR |
| AATGGAACATTTGAGAGATA+AGG | 0.407947 | 4_3:-55124439 | Msa0648670:three_prime_UTR |
| CACCACCACCGGGAACCTTT+GGG | 0.411013 | 4_3:+55128104 | None:intergenic |
| GTCAAGATCCCAAAGGTTCC+CGG | 0.419171 | 4_3:-55128112 | Msa0648670:CDS |
| TTCCTCAAGTCTATAAATGC+AGG | 0.423117 | 4_3:+55124737 | None:intergenic |
| ATCCCAAAGGTTCCCGGTGG+TGG | 0.434393 | 4_3:-55128106 | Msa0648670:CDS |
| GCCAAAAGTGCTCAATTGAT+TGG | 0.439483 | 4_3:-55124779 | Msa0648670:CDS |
| GTTTCCATTCTCCATCTTTG+TGG | 0.440230 | 4_3:-55124369 | Msa0648670:three_prime_UTR |
| AGGCTGTTAGTCGAGAAATA+AGG | 0.442888 | 4_3:-55125448 | Msa0648670:CDS |
| TTCTTGAGCAGCAACCTGCT+TGG | 0.447199 | 4_3:+55125325 | None:intergenic |
| TCGTGCACGACCTCATTTAG+TGG | 0.454933 | 4_3:-55126767 | Msa0648670:CDS |
| TTTCCATTCTCCATCTTTGT+GGG | 0.455212 | 4_3:-55124368 | Msa0648670:three_prime_UTR |
| AGCGTTTCATGTATAATAGA+AGG | 0.462263 | 4_3:+55125712 | None:intergenic |
| ATCCAGTGCAATGTTGAATT+GGG | 0.464199 | 4_3:+55125403 | None:intergenic |
| CCAAAGGTTCCCGGTGGTGG+TGG | 0.465351 | 4_3:-55128103 | Msa0648670:CDS |
| AACACTTTGTATAATGTTGA+GGG | 0.467807 | 4_3:-55128022 | Msa0648670:CDS |
| GGATCTCTTGCTGAATCTCC+AGG | 0.469133 | 4_3:-55124645 | Msa0648670:CDS |
| ATCACAGGCCTCTCAAACCA+TGG | 0.472479 | 4_3:+55126799 | None:intergenic |
| ACATAACTATTTCTTTCCAC+TGG | 0.472566 | 4_3:+55124607 | None:intergenic |
| AGCAGAAATTCCACCACCAC+CGG | 0.480850 | 4_3:+55128093 | None:intergenic |
| AGCTGCAATTGAAGCCAAGC+AGG | 0.481447 | 4_3:-55125339 | Msa0648670:CDS |
| ACCAACGGTCTATCGAACTC+TGG | 0.482518 | 4_3:-55125761 | Msa0648670:CDS |
| TATCCCACAAAGATGGAGAA+TGG | 0.490042 | 4_3:+55124365 | None:intergenic |
| TAAGGAAGATATTGACTGAA+AGG | 0.495116 | 4_3:-55125430 | Msa0648670:CDS |
| TAGACCGTTGGTAATTGGTC+TGG | 0.503898 | 4_3:+55125772 | None:intergenic |
| ATTAAAGTTAGCATTCTTGG+TGG | 0.509506 | 4_3:-55128067 | Msa0648670:CDS |
| AAGGAAGATATTGACTGAAA+GGG | 0.510989 | 4_3:-55125429 | Msa0648670:CDS |
| AAATTACCATTTGGAGATCA+CGG | 0.515095 | 4_3:+55126728 | None:intergenic |
| TGGGTGAGAATTATAATGAA+AGG | 0.516327 | 4_3:-55125741 | Msa0648670:CDS |
| GAGGTCATATCCCACAAAGA+TGG | 0.517734 | 4_3:+55124358 | None:intergenic |
| GAGGAAAATTGAAGCTGCTA+GGG | 0.523704 | 4_3:-55124720 | Msa0648670:CDS |
| GGGTGAGAATTATAATGAAA+GGG | 0.533630 | 4_3:-55125740 | Msa0648670:CDS |
| AAACACTTTGTATAATGTTG+AGG | 0.536366 | 4_3:-55128023 | Msa0648670:CDS |
| ACCCTGCATTTATAGACTTG+AGG | 0.536732 | 4_3:-55124739 | Msa0648670:CDS |
| AAGTGCTATTATTAGAGCAC+AGG | 0.538979 | 4_3:-55125255 | Msa0648670:intron |
| GTTGGTAATTGGTCTGGCAC+GGG | 0.547210 | 4_3:+55125778 | None:intergenic |
| TCCTCAAGTCTATAAATGCA+GGG | 0.549653 | 4_3:+55124738 | None:intergenic |
| TGAGGAAAATTGAAGCTGCT+AGG | 0.555994 | 4_3:-55124721 | Msa0648670:CDS |
| CGTTGGTAATTGGTCTGGCA+CGG | 0.557172 | 4_3:+55125777 | None:intergenic |
| CTCCCAATTCAACATTGCAC+TGG | 0.559449 | 4_3:-55125405 | Msa0648670:CDS |
| TTATGATCCCATGGTTTGAG+AGG | 0.566462 | 4_3:-55126807 | Msa0648670:CDS |
| AATTGCAAATTCTGCCAACA+AGG | 0.567716 | 4_3:-55124684 | Msa0648670:CDS |
| AGGAAGCCGTGATCTCCAAA+TGG | 0.568285 | 4_3:-55126734 | Msa0648670:intron |
| TATATGCAGGTCTATCCTGA+AGG | 0.571690 | 4_3:-55126838 | Msa0648670:intron |
| CCAACGGTCTATCGAACTCT+GGG | 0.576164 | 4_3:-55125760 | Msa0648670:CDS |
| GAAGTGCTCTCCACTAAATG+AGG | 0.579441 | 4_3:+55126757 | None:intergenic |
| AGCTGCTAGGGAAATCGCTA+AGG | 0.579747 | 4_3:-55124708 | Msa0648670:CDS |
| GAACACATATTATGATCCCA+TGG | 0.591378 | 4_3:-55126816 | Msa0648670:CDS |
| TTTCATGTATAATAGAAGGC+AGG | 0.592510 | 4_3:+55125716 | None:intergenic |
| TTCTATCAACTGTTCACATG+AGG | 0.601973 | 4_3:-55124519 | Msa0648670:three_prime_UTR |
| GATTTAAAATTGGAGTCCAG+TGG | 0.610027 | 4_3:-55124623 | Msa0648670:CDS |
| CCCAGAGTTCGATAGACCGT+TGG | 0.613107 | 4_3:+55125760 | None:intergenic |
| TCACAGGCCTCTCAAACCAT+GGG | 0.623389 | 4_3:+55126800 | None:intergenic |
| CAGTGCAATGTTGAATTGGG+AGG | 0.624755 | 4_3:+55125406 | None:intergenic |
| GCACGAACATCATAGATCAC+AGG | 0.624896 | 4_3:+55126784 | None:intergenic |
| GCAGAAATTCCACCACCACC+GGG | 0.625221 | 4_3:+55128094 | None:intergenic |
| ACATGAAACGCTCAAATCTG+TGG | 0.625780 | 4_3:-55125701 | Msa0648670:CDS |
| TCAGCTCATTACTCAGAGAG+AGG | 0.636764 | 4_3:-55125659 | Msa0648670:intron |
| CAACAACGTCAAGATCCCAA+AGG | 0.651733 | 4_3:-55128119 | Msa0648670:CDS |
| ACTTTGTATAATGTTGAGGG+TGG | 0.664841 | 4_3:-55128019 | Msa0648670:CDS |
| TCTCTGAGTAATGAGCTGAC+TGG | 0.669211 | 4_3:+55125663 | None:intergenic |
| CGTGCCAGACCAATTACCAA+CGG | 0.684962 | 4_3:-55125776 | Msa0648670:CDS |
| AAGATCCCAAAGGTTCCCGG+TGG | 0.741647 | 4_3:-55128109 | Msa0648670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATAAGTCAATTTT+GGG | + | chr4_3:55124834-55124853 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATAAGTCAATTT+TGG | + | chr4_3:55124835-55124854 | None:intergenic | 10.0% |
| !! | AAATAGAAACATATTAAAAT+AGG | + | chr4_3:55125563-55125582 | None:intergenic | 10.0% |
| !! | TAATAATGAATATGAATTAT+GGG | + | chr4_3:55126443-55126462 | None:intergenic | 10.0% |
| !! | ATAATAATGAATATGAATTA+TGG | + | chr4_3:55126444-55126463 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTGTATGATT+TGG | + | chr4_3:55127358-55127377 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAGTCAATTTTG+GGG | + | chr4_3:55124833-55124852 | None:intergenic | 15.0% |
| !! | CAATAATATGATAAAAATGA+CGG | + | chr4_3:55125135-55125154 | None:intergenic | 15.0% |
| !! | CATATTAAAATAGGTTTAAT+AGG | + | chr4_3:55125554-55125573 | None:intergenic | 15.0% |
| !!! | CTACTTTAATTTATTATGAT+GGG | + | chr4_3:55126196-55126215 | None:intergenic | 15.0% |
| !!! | TCTACTTTAATTTATTATGA+TGG | + | chr4_3:55126197-55126216 | None:intergenic | 15.0% |
| !!! | AGAATATCATTTTAGATGAT+TGG | - | chr4_3:55124901-55124920 | Msa0648670:intron | 20.0% |
| !!! | GAATATCATTTTAGATGATT+GGG | - | chr4_3:55124902-55124921 | Msa0648670:intron | 20.0% |
| !!! | TTTAATCTTCTTCTTTGTTT+AGG | - | chr4_3:55124973-55124992 | Msa0648670:intron | 20.0% |
| !! | AAAAAGCTTCTATACTAAAA+AGG | + | chr4_3:55125184-55125203 | None:intergenic | 20.0% |
| !!! | TTTTAGTATAGAAGCTTTTT+AGG | - | chr4_3:55125184-55125203 | Msa0648670:intron | 20.0% |
| !!! | TTTAGTATAGAAGCTTTTTA+GGG | - | chr4_3:55125185-55125204 | Msa0648670:intron | 20.0% |
| !! | CATAAACTGAACTAAAAAAT+AGG | - | chr4_3:55125387-55125406 | Msa0648670:CDS | 20.0% |
| !!! | AACTAACAATTCAGTTTTTT+AGG | - | chr4_3:55125463-55125482 | Msa0648670:intron | 20.0% |
| !!! | CTATTTTAATATGTTTCGTT+AGG | - | chr4_3:55125577-55125596 | Msa0648670:intron | 20.0% |
| !! | TATATTGATATACTACAACA+AGG | + | chr4_3:55125626-55125645 | None:intergenic | 20.0% |
| !! | AAACAAAAGAAATTACCATT+TGG | + | chr4_3:55125779-55125798 | None:intergenic | 20.0% |
| !! | CAACATTAAAATGACTTTAA+TGG | + | chr4_3:55125932-55125951 | None:intergenic | 20.0% |
| !! | TAGTGTACATAGTAATAATT+AGG | - | chr4_3:55126234-55126253 | Msa0648670:intron | 20.0% |
| !! | AGTGTACATAGTAATAATTA+GGG | - | chr4_3:55126235-55126254 | Msa0648670:intron | 20.0% |
| !!! | TCTAAAATGATCCAAATTAT+AGG | - | chr4_3:55127027-55127046 | Msa0648670:intron | 20.0% |
| !! | TTTGAGAAAAAAGTTCAATA+GGG | + | chr4_3:55127626-55127645 | None:intergenic | 20.0% |
| !!! | TTTTGAGAAAAAAGTTCAAT+AGG | + | chr4_3:55127627-55127646 | None:intergenic | 20.0% |
| !!! | GATGTTAAATAAGGTTTTAT+TGG | - | chr4_3:55128079-55128098 | Msa0648670:CDS | 20.0% |
| ! | TTGATTAAAGTTAGCATTCT+TGG | - | chr4_3:55124425-55124444 | Msa0648670:three_prime_UTR | 25.0% |
| ! | AAACACTTTGTATAATGTTG+AGG | - | chr4_3:55124472-55124491 | Msa0648670:three_prime_UTR | 25.0% |
| ! | AACACTTTGTATAATGTTGA+GGG | - | chr4_3:55124473-55124492 | Msa0648670:three_prime_UTR | 25.0% |
| ! | TAACTAACAGTGAATGAAAA+TGG | + | chr4_3:55124554-55124573 | None:intergenic | 25.0% |
| ! | CTGATTCTAAATTGAAAGTT+CGG | - | chr4_3:55125424-55125443 | Msa0648670:CDS | 25.0% |
| ! | TAAGAACAAGAAAAAATAGC+AGG | + | chr4_3:55125804-55125823 | None:intergenic | 25.0% |
| ! | ACTTTAGTACACTTGATTAT+AGG | - | chr4_3:55125838-55125857 | Msa0648670:intron | 25.0% |
| !!! | TTTAATGGACTAAACTGAAA+GGG | + | chr4_3:55125917-55125936 | None:intergenic | 25.0% |
| ! | TATGTGTGTAAAAACCTTAA+AGG | + | chr4_3:55126099-55126118 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGTAATGTCCT+TGG | + | chr4_3:55126144-55126163 | None:intergenic | 25.0% |
| ! | TAAAGTAGAATATGATGCTT+TGG | - | chr4_3:55126208-55126227 | Msa0648670:intron | 25.0% |
| ! | GTGTACATAGTAATAATTAG+GGG | - | chr4_3:55126236-55126255 | Msa0648670:intron | 25.0% |
| ! | TGTACATAGTAATAATTAGG+GGG | - | chr4_3:55126237-55126256 | Msa0648670:intron | 25.0% |
| ! | AATGTGATACAATTGAGAAT+TGG | + | chr4_3:55126399-55126418 | None:intergenic | 25.0% |
| ! | AACATAAATTTCGAATTCCA+TGG | + | chr4_3:55126502-55126521 | None:intergenic | 25.0% |
| ! | ACACAGTAATAAAGTTAGAA+TGG | + | chr4_3:55126561-55126580 | None:intergenic | 25.0% |
| ! | TAACTTTATTACTGTGTAGA+CGG | - | chr4_3:55126564-55126583 | Msa0648670:intron | 25.0% |
| ! | ATTGTGCATAAGAAAAATGT+GGG | + | chr4_3:55126600-55126619 | None:intergenic | 25.0% |
| ! | TATTGTGCATAAGAAAAATG+TGG | + | chr4_3:55126601-55126620 | None:intergenic | 25.0% |
| ! | CATTTCCATGTAATCTATTA+TGG | - | chr4_3:55126647-55126666 | Msa0648670:intron | 25.0% |
| ! | AAGATCCATAATAGATTACA+TGG | + | chr4_3:55126655-55126674 | None:intergenic | 25.0% |
| ! | TCAACTAATACTGGATTAAT+TGG | - | chr4_3:55126892-55126911 | Msa0648670:intron | 25.0% |
| ! | CAACTAATACTGGATTAATT+GGG | - | chr4_3:55126893-55126912 | Msa0648670:intron | 25.0% |
| ! | AAAATGAATCACAATCATAC+AGG | - | chr4_3:55126990-55127009 | Msa0648670:intron | 25.0% |
| ! | TTGAGAAAAAAGTTCAATAG+GGG | + | chr4_3:55127625-55127644 | None:intergenic | 25.0% |
| ! | AAAAGTAACTCCTATGTATT+GGG | + | chr4_3:55127650-55127669 | None:intergenic | 25.0% |
| ! | AAAAAGTAACTCCTATGTAT+TGG | + | chr4_3:55127651-55127670 | None:intergenic | 25.0% |
| ! | TTCAACTTCTCATTACTTAA+TGG | - | chr4_3:55127669-55127688 | Msa0648670:intron | 25.0% |
| !!! | ATGGTTTATTTTTGACATAC+AGG | - | chr4_3:55127688-55127707 | Msa0648670:intron | 25.0% |
| !!! | TGGTTTATTTTTGACATACA+GGG | - | chr4_3:55127689-55127708 | Msa0648670:intron | 25.0% |
| !! | GATTGTCATTATCTTTTCAA+TGG | - | chr4_3:55128038-55128057 | Msa0648670:CDS | 25.0% |
| ATTAAAGTTAGCATTCTTGG+TGG | - | chr4_3:55124428-55124447 | Msa0648670:three_prime_UTR | 30.0% | |
| ATTCTATCATCTCTACAGTA+GGG | + | chr4_3:55124886-55124905 | None:intergenic | 30.0% | |
| TATTCTATCATCTCTACAGT+AGG | + | chr4_3:55124887-55124906 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCAGTCTCATGAT+CGG | - | chr4_3:55125034-55125053 | Msa0648670:intron | 30.0% |
| TCATGTTTCCATAACATAGA+CGG | + | chr4_3:55125076-55125095 | None:intergenic | 30.0% | |
| ! | TTTAGTTCACAGTTTCAGTT+TGG | - | chr4_3:55125497-55125516 | Msa0648670:intron | 30.0% |
| ! | TAGTATGCCTTTTTATATGC+AGG | - | chr4_3:55125644-55125663 | Msa0648670:intron | 30.0% |
| ATCATAATATGTGTTCCTTC+AGG | + | chr4_3:55125675-55125694 | None:intergenic | 30.0% | |
| AAATTACCATTTGGAGATCA+CGG | + | chr4_3:55125770-55125789 | None:intergenic | 30.0% | |
| ATCAAGTGTACTAAAGTACA+TGG | + | chr4_3:55125835-55125854 | None:intergenic | 30.0% | |
| ! | GATAATAGCAACTTGTCTTT+TGG | - | chr4_3:55125860-55125879 | Msa0648670:intron | 30.0% |
| !! | CTTTAATGGACTAAACTGAA+AGG | + | chr4_3:55125918-55125937 | None:intergenic | 30.0% |
| !! | AAAGGACACTCATTTTGAAA+CGG | + | chr4_3:55126081-55126100 | None:intergenic | 30.0% |
| TTCAAAATGAGTGTCCTTTA+AGG | - | chr4_3:55126082-55126101 | Msa0648670:intron | 30.0% | |
| AAATGCAATAATGTTGTCCA+AGG | - | chr4_3:55126124-55126143 | Msa0648670:intron | 30.0% | |
| ACTAAATTGAAAAGCGAGAA+TGG | - | chr4_3:55126280-55126299 | Msa0648670:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+TGG | - | chr4_3:55126337-55126356 | Msa0648670:intron | 30.0% |
| AATGTTACAATCTATGACCA+TGG | - | chr4_3:55126482-55126501 | Msa0648670:intron | 30.0% | |
| TTGTGCATAAGAAAAATGTG+GGG | + | chr4_3:55126599-55126618 | None:intergenic | 30.0% | |
| TGAAACTGTGATACAGATTA+TGG | + | chr4_3:55126629-55126648 | None:intergenic | 30.0% | |
| !!! | TATGGATCTTTTATTTTGCC+AGG | - | chr4_3:55126665-55126684 | Msa0648670:intron | 30.0% |
| !! | TTATTTTGCCAGGTGAAAAT+TGG | - | chr4_3:55126675-55126694 | Msa0648670:intron | 30.0% |
| TGGGTGAGAATTATAATGAA+AGG | - | chr4_3:55126754-55126773 | Msa0648670:CDS | 30.0% | |
| GGGTGAGAATTATAATGAAA+GGG | - | chr4_3:55126755-55126774 | Msa0648670:CDS | 30.0% | |
| TTTCATGTATAATAGAAGGC+AGG | + | chr4_3:55126782-55126801 | None:intergenic | 30.0% | |
| AGCGTTTCATGTATAATAGA+AGG | + | chr4_3:55126786-55126805 | None:intergenic | 30.0% | |
| GTATTAGTTGAACAGAAGAT+AGG | + | chr4_3:55126883-55126902 | None:intergenic | 30.0% | |
| ATCTTCTGTTCAACTAATAC+TGG | - | chr4_3:55126883-55126902 | Msa0648670:intron | 30.0% | |
| ATTCCAACTGATATGTAAAG+AGG | + | chr4_3:55126925-55126944 | None:intergenic | 30.0% | |
| ! | TAAGGAAGATATTGACTGAA+AGG | - | chr4_3:55127065-55127084 | Msa0648670:intron | 30.0% |
| ! | AAGGAAGATATTGACTGAAA+GGG | - | chr4_3:55127066-55127085 | Msa0648670:intron | 30.0% |
| !! | TCTATCACAAGTTTGACTTT+TGG | - | chr4_3:55127121-55127140 | Msa0648670:intron | 30.0% |
| !! | CTATCACAAGTTTGACTTTT+GGG | - | chr4_3:55127122-55127141 | Msa0648670:intron | 30.0% |
| TTATGAACCATCTCATATGT+AGG | + | chr4_3:55127284-55127303 | None:intergenic | 30.0% | |
| TGTTTGAGTGATATAAACTC+TGG | - | chr4_3:55127423-55127442 | Msa0648670:intron | 30.0% | |
| GATATAAACTCTGGATAATC+AGG | - | chr4_3:55127432-55127451 | Msa0648670:intron | 30.0% | |
| TTTCTCAAAACCCAATACAT+AGG | - | chr4_3:55127637-55127656 | Msa0648670:intron | 30.0% | |
| ! | GAATCTCCAGGATTTAAAAT+TGG | - | chr4_3:55127862-55127881 | Msa0648670:intron | 30.0% |
| ! | ACATAACTATTTCTTTCCAC+TGG | + | chr4_3:55127891-55127910 | None:intergenic | 30.0% |
| AATGGAACATTTGAGAGATA+AGG | - | chr4_3:55128056-55128075 | Msa0648670:CDS | 30.0% | |
| ATGGAACATTTGAGAGATAA+GGG | - | chr4_3:55128057-55128076 | Msa0648670:CDS | 30.0% | |
| GAGATAAGGGATGTTAAATA+AGG | - | chr4_3:55128070-55128089 | Msa0648670:CDS | 30.0% | |
| ACTTTGTATAATGTTGAGGG+TGG | - | chr4_3:55124476-55124495 | Msa0648670:three_prime_UTR | 35.0% | |
| ATTGTCTTTAACCGTGTTGT+TGG | - | chr4_3:55124509-55124528 | Msa0648670:three_prime_UTR | 35.0% | |
| ACACTTATTGAAGATGTGTC+CGG | + | chr4_3:55124620-55124639 | None:intergenic | 35.0% | |
| ACACATCTTCAATAAGTGTC+AGG | - | chr4_3:55124621-55124640 | Msa0648670:CDS | 35.0% | |
| CACATCTTCAATAAGTGTCA+GGG | - | chr4_3:55124622-55124641 | Msa0648670:CDS | 35.0% | |
| ACATCTTCAATAAGTGTCAG+GGG | - | chr4_3:55124623-55124642 | Msa0648670:CDS | 35.0% | |
| ! | GCTAATTTAAAGTGAGTTGC+AGG | - | chr4_3:55124686-55124705 | Msa0648670:CDS | 35.0% |
| ! | CTTCTTTGTTTAGGTTCTCA+TGG | - | chr4_3:55124982-55125001 | Msa0648670:intron | 35.0% |
| ATTTCATGCCGTCTATGTTA+TGG | - | chr4_3:55125065-55125084 | Msa0648670:intron | 35.0% | |
| AAAAATCTTCTGCTCTGGTT+GGG | + | chr4_3:55125109-55125128 | None:intergenic | 35.0% | |
| AGATGAAGTGACAGTTGTAT+TGG | + | chr4_3:55125299-55125318 | None:intergenic | 35.0% | |
| ACTTGAACTCTATCGAAGTT+TGG | + | chr4_3:55125348-55125367 | None:intergenic | 35.0% | |
| !!! | CAGTTTTTTAGGTTCAGTTC+TGG | - | chr4_3:55125474-55125493 | Msa0648670:intron | 35.0% |
| ACAAGGTTACTAGTCAACAT+AGG | + | chr4_3:55125609-55125628 | None:intergenic | 35.0% | |
| GGATAGACCTGCATATAAAA+AGG | + | chr4_3:55125654-55125673 | None:intergenic | 35.0% | |
| GAACACATATTATGATCCCA+TGG | - | chr4_3:55125679-55125698 | Msa0648670:CDS | 35.0% | |
| !!! | CTTGTCTTTTGGTTTGAAGT+TGG | - | chr4_3:55125871-55125890 | Msa0648670:intron | 35.0% |
| CATAGATGGCGTGATTTATA+TGG | + | chr4_3:55125981-55126000 | None:intergenic | 35.0% | |
| TATAAATCACGCCATCTATG+TGG | - | chr4_3:55125981-55126000 | Msa0648670:intron | 35.0% | |
| ATAAATCACGCCATCTATGT+GGG | - | chr4_3:55125982-55126001 | Msa0648670:intron | 35.0% | |
| ATATGATACATAAGCCCACA+AGG | + | chr4_3:55126015-55126034 | None:intergenic | 35.0% | |
| !!! | AAGGACACTCATTTTGAAAC+GGG | + | chr4_3:55126080-55126099 | None:intergenic | 35.0% |
| AAATGCATCAATAGGTAACG+AGG | + | chr4_3:55126173-55126192 | None:intergenic | 35.0% | |
| ! | ATGATGGGAAATGCATCAAT+AGG | + | chr4_3:55126181-55126200 | None:intergenic | 35.0% |
| !! | TAATAATTAGGGGGTACTGT+TGG | - | chr4_3:55126246-55126265 | Msa0648670:intron | 35.0% |
| !!! | GACACTCATTTTGAAATGGA+GGG | - | chr4_3:55126341-55126360 | Msa0648670:intron | 35.0% |
| GTGATACAATTGAGAATTGG+TGG | + | chr4_3:55126396-55126415 | None:intergenic | 35.0% | |
| ATGCCTCTTTACATATCAGT+TGG | - | chr4_3:55126919-55126938 | Msa0648670:intron | 35.0% | |
| TCGACTAACAGCCTATAATT+TGG | + | chr4_3:55127041-55127060 | None:intergenic | 35.0% | |
| ATCCAGTGCAATGTTGAATT+GGG | + | chr4_3:55127095-55127114 | None:intergenic | 35.0% | |
| ! | AAGTGCTATTATTAGAGCAC+AGG | - | chr4_3:55127240-55127259 | Msa0648670:intron | 35.0% |
| AAATGAAAAGATCGCTGCAA+TGG | - | chr4_3:55127384-55127403 | Msa0648670:intron | 35.0% | |
| GTTCATTCAAGAGGAAAAAG+TGG | + | chr4_3:55127536-55127555 | None:intergenic | 35.0% | |
| GTCAAATAGGTTCATTCAAG+AGG | + | chr4_3:55127545-55127564 | None:intergenic | 35.0% | |
| ! | ACCAATCAATTGAGCACTTT+TGG | + | chr4_3:55127720-55127739 | None:intergenic | 35.0% |
| TCCTCAAGTCTATAAATGCA+GGG | + | chr4_3:55127760-55127779 | None:intergenic | 35.0% | |
| TTCCTCAAGTCTATAAATGC+AGG | + | chr4_3:55127761-55127780 | None:intergenic | 35.0% | |
| AATTGCAAATTCTGCCAACA+AGG | - | chr4_3:55127811-55127830 | Msa0648670:intron | 35.0% | |
| TGCATTCAAGAAAACCTTGT+TGG | + | chr4_3:55127828-55127847 | None:intergenic | 35.0% | |
| ! | TGGACTCCAATTTTAAATCC+TGG | + | chr4_3:55127871-55127890 | None:intergenic | 35.0% |
| ! | GATTTAAAATTGGAGTCCAG+TGG | - | chr4_3:55127872-55127891 | Msa0648670:intron | 35.0% |
| TTCTATCAACTGTTCACATG+AGG | - | chr4_3:55127976-55127995 | Msa0648670:intron | 35.0% | |
| CAGCTTTGCAAACTGAAATA+TGG | - | chr4_3:55128001-55128020 | Msa0648670:intron | 35.0% | |
| TATCCTTGACACCAACAACA+CGG | + | chr4_3:55124523-55124542 | None:intergenic | 40.0% | |
| !! | TGTTGTTGGTGTCAAGGATA+AGG | - | chr4_3:55124523-55124542 | Msa0648670:three_prime_UTR | 40.0% |
| CATCTTCAATAAGTGTCAGG+GGG | - | chr4_3:55124624-55124643 | Msa0648670:CDS | 40.0% | |
| GATGATTGGGTCATGTATGA+AGG | - | chr4_3:55124915-55124934 | Msa0648670:intron | 40.0% | |
| CAAAAATCTTCTGCTCTGGT+TGG | + | chr4_3:55125110-55125129 | None:intergenic | 40.0% | |
| GGTTCAAAAATCTTCTGCTC+TGG | + | chr4_3:55125114-55125133 | None:intergenic | 40.0% | |
| TATATGCAGGTCTATCCTGA+AGG | - | chr4_3:55125657-55125676 | Msa0648670:intron | 40.0% | |
| TTATGATCCCATGGTTTGAG+AGG | - | chr4_3:55125688-55125707 | Msa0648670:CDS | 40.0% | |
| AAACTGAAAGGGTAAGGTGA+GGG | + | chr4_3:55125906-55125925 | None:intergenic | 40.0% | |
| TAAACTGAAAGGGTAAGGTG+AGG | + | chr4_3:55125907-55125926 | None:intergenic | 40.0% | |
| TGGACTAAACTGAAAGGGTA+AGG | + | chr4_3:55125912-55125931 | None:intergenic | 40.0% | |
| !!! | AGGACACTCATTTTGAAACG+GGG | + | chr4_3:55126079-55126098 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAATGG+AGG | - | chr4_3:55126340-55126359 | Msa0648670:intron | 40.0% |
| ! | CTCTAAGTCCAATTTTCACC+TGG | + | chr4_3:55126686-55126705 | None:intergenic | 40.0% |
| !! | TTCGATAGACCGTTGGTAAT+TGG | + | chr4_3:55126731-55126750 | None:intergenic | 40.0% |
| ACATGAAACGCTCAAATCTG+TGG | - | chr4_3:55126794-55126813 | Msa0648670:CDS | 40.0% | |
| AGGCTGTTAGTCGAGAAATA+AGG | - | chr4_3:55127047-55127066 | Msa0648670:intron | 40.0% | |
| CATCCAGTGCAATGTTGAAT+TGG | + | chr4_3:55127096-55127115 | None:intergenic | 40.0% | |
| !! | TCACAAGTTTGACTTTTGGG+AGG | - | chr4_3:55127125-55127144 | Msa0648670:intron | 40.0% |
| !! | CACAAGTTTGACTTTTGGGA+GGG | - | chr4_3:55127126-55127145 | Msa0648670:intron | 40.0% |
| CCATCTCATATGTAGGAATC+AGG | + | chr4_3:55127277-55127296 | None:intergenic | 40.0% | |
| CCTGATTCCTACATATGAGA+TGG | - | chr4_3:55127274-55127293 | Msa0648670:intron | 40.0% | |
| TTCAAGAGGAAAAAGTGGAG+AGG | + | chr4_3:55127531-55127550 | None:intergenic | 40.0% | |
| GAATGAACCTATTTGACGAC+TGG | - | chr4_3:55127548-55127567 | Msa0648670:intron | 40.0% | |
| GATGCATGGATAAGTTGTCA+AGG | - | chr4_3:55127572-55127591 | Msa0648670:intron | 40.0% | |
| CATGGATAAGTTGTCAAGGA+AGG | - | chr4_3:55127576-55127595 | Msa0648670:intron | 40.0% | |
| TTCAATAGGGGTCATGTTGA+AGG | + | chr4_3:55127613-55127632 | None:intergenic | 40.0% | |
| !! | GCCAAAAGTGCTCAATTGAT+TGG | - | chr4_3:55127716-55127735 | Msa0648670:intron | 40.0% |
| GTCTATAAATGCAGGGTTGT+TGG | + | chr4_3:55127753-55127772 | None:intergenic | 40.0% | |
| ACCCTGCATTTATAGACTTG+AGG | - | chr4_3:55127756-55127775 | Msa0648670:intron | 40.0% | |
| TGAGGAAAATTGAAGCTGCT+AGG | - | chr4_3:55127774-55127793 | Msa0648670:intron | 40.0% | |
| GAGGAAAATTGAAGCTGCTA+GGG | - | chr4_3:55127775-55127794 | Msa0648670:intron | 40.0% | |
| ! | CAAGGTTTTCTTGAATGCAG+AGG | - | chr4_3:55127829-55127848 | Msa0648670:intron | 40.0% |
| GTTTCCATTCTCCATCTTTG+TGG | - | chr4_3:55128126-55128145 | Msa0648670:CDS | 40.0% | |
| CAACAACGTCAAGATCCCAA+AGG | - | chr4_3:55124376-55124395 | Msa0648670:three_prime_UTR | 45.0% | |
| !! | TAACCGTGTTGTTGGTGTCA+AGG | - | chr4_3:55124517-55124536 | Msa0648670:three_prime_UTR | 45.0% |
| ACTCCAAAGACCTGCATACT+TGG | - | chr4_3:55125271-55125290 | Msa0648670:CDS | 45.0% | |
| CTCCAAAGACCTGCATACTT+GGG | - | chr4_3:55125272-55125291 | Msa0648670:CDS | 45.0% | |
| TGTATTGGACCCAAGTATGC+AGG | + | chr4_3:55125284-55125303 | None:intergenic | 45.0% | |
| GCACGAACATCATAGATCAC+AGG | + | chr4_3:55125714-55125733 | None:intergenic | 45.0% | |
| ! | GAAGTGCTCTCCACTAAATG+AGG | + | chr4_3:55125741-55125760 | None:intergenic | 45.0% |
| !! | CATTTAGTGGAGAGCACTTC+AGG | - | chr4_3:55125741-55125760 | Msa0648670:CDS | 45.0% |
| ! | ACGGGGGGAGTATATGAAAT+AGG | + | chr4_3:55126062-55126081 | None:intergenic | 45.0% |
| !!! | GACACTCATTTTGAAACGGG+GGG | + | chr4_3:55126077-55126096 | None:intergenic | 45.0% |
| !!! | GGACACTCATTTTGAAACGG+GGG | + | chr4_3:55126078-55126097 | None:intergenic | 45.0% |
| ! | GAGAATTGGTGGTTCAGTTC+AGG | + | chr4_3:55126385-55126404 | None:intergenic | 45.0% |
| !! | TAGACCGTTGGTAATTGGTC+TGG | + | chr4_3:55126726-55126745 | None:intergenic | 45.0% |
| TCTCTGAGTAATGAGCTGAC+TGG | + | chr4_3:55126835-55126854 | None:intergenic | 45.0% | |
| TCAGCTCATTACTCAGAGAG+AGG | - | chr4_3:55126836-55126855 | Msa0648670:intron | 45.0% | |
| CAGTGCAATGTTGAATTGGG+AGG | + | chr4_3:55127092-55127111 | None:intergenic | 45.0% | |
| CTCCCAATTCAACATTGCAC+TGG | - | chr4_3:55127090-55127109 | Msa0648670:intron | 45.0% | |
| ATCGCTGCAATGGTATTTGC+TGG | - | chr4_3:55127394-55127413 | Msa0648670:intron | 45.0% | |
| GAGGAAAAAGTGGAGAGGAA+GGG | + | chr4_3:55127526-55127545 | None:intergenic | 45.0% | |
| AGAGGAAAAAGTGGAGAGGA+AGG | + | chr4_3:55127527-55127546 | None:intergenic | 45.0% | |
| TGCATCACCAGTCGTCAAAT+AGG | + | chr4_3:55127558-55127577 | None:intergenic | 45.0% | |
| ! | ATTTGACGACTGGTGATGCA+TGG | - | chr4_3:55127558-55127577 | Msa0648670:intron | 45.0% |
| !!! | TATATTTTTTTAAAAAACAA+CGG | + | chr4_3:55127325-55127344 | None:intergenic | 5.0% |
| GTCAAGATCCCAAAGGTTCC+CGG | - | chr4_3:55124383-55124402 | Msa0648670:three_prime_UTR | 50.0% | |
| AGCAGAAATTCCACCACCAC+CGG | + | chr4_3:55124405-55124424 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTGCTGTCTA+TGG | - | chr4_3:55124443-55124462 | Msa0648670:three_prime_UTR | 50.0% |
| TTGAAGATGTGTCCGGTGTC+TGG | + | chr4_3:55124613-55124632 | None:intergenic | 50.0% | |
| GACCCAAGTATGCAGGTCTT+TGG | + | chr4_3:55125277-55125296 | None:intergenic | 50.0% | |
| TCACAGGCCTCTCAAACCAT+GGG | + | chr4_3:55125698-55125717 | None:intergenic | 50.0% | |
| ATCACAGGCCTCTCAAACCA+TGG | + | chr4_3:55125699-55125718 | None:intergenic | 50.0% | |
| TCGTGCACGACCTCATTTAG+TGG | - | chr4_3:55125728-55125747 | Msa0648670:CDS | 50.0% | |
| AGGAAGCCGTGATCTCCAAA+TGG | - | chr4_3:55125761-55125780 | Msa0648670:CDS | 50.0% | |
| TGAAAGGGTAAGGTGAGGGA+AGG | + | chr4_3:55125902-55125921 | None:intergenic | 50.0% | |
| AGGTCAACAGCCCACATAGA+TGG | + | chr4_3:55125995-55126014 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTTGACCTTG+TGG | - | chr4_3:55125997-55126016 | Msa0648670:intron | 50.0% |
| ! | ATGTGGGCTGTTGACCTTGT+GGG | - | chr4_3:55125998-55126017 | Msa0648670:intron | 50.0% |
| !! | GTTGGTAATTGGTCTGGCAC+GGG | + | chr4_3:55126720-55126739 | None:intergenic | 50.0% |
| !! | CGTTGGTAATTGGTCTGGCA+CGG | + | chr4_3:55126721-55126740 | None:intergenic | 50.0% |
| CGTGCCAGACCAATTACCAA+CGG | - | chr4_3:55126719-55126738 | Msa0648670:intron | 50.0% | |
| ACCAACGGTCTATCGAACTC+TGG | - | chr4_3:55126734-55126753 | Msa0648670:intron | 50.0% | |
| CCAACGGTCTATCGAACTCT+GGG | - | chr4_3:55126735-55126754 | Msa0648670:CDS | 50.0% | |
| AGCTGCAATTGAAGCCAAGC+AGG | - | chr4_3:55127156-55127175 | Msa0648670:intron | 50.0% | |
| TTCTTGAGCAGCAACCTGCT+TGG | + | chr4_3:55127173-55127192 | None:intergenic | 50.0% | |
| AGCTGCTAGGGAAATCGCTA+AGG | - | chr4_3:55127787-55127806 | Msa0648670:intron | 50.0% | |
| GGATCTCTTGCTGAATCTCC+AGG | - | chr4_3:55127850-55127869 | Msa0648670:intron | 50.0% | |
| AAGATCCCAAAGGTTCCCGG+TGG | - | chr4_3:55124386-55124405 | Msa0648670:three_prime_UTR | 55.0% | |
| GCAGAAATTCCACCACCACC+GGG | + | chr4_3:55124404-55124423 | None:intergenic | 55.0% | |
| CCCAGAGTTCGATAGACCGT+TGG | + | chr4_3:55126738-55126757 | None:intergenic | 55.0% | |
| AAGTGGAGAGGAAGGGAGCA+GGG | + | chr4_3:55127519-55127538 | None:intergenic | 55.0% | |
| AAAGTGGAGAGGAAGGGAGC+AGG | + | chr4_3:55127520-55127539 | None:intergenic | 55.0% | |
| ATCCCAAAGGTTCCCGGTGG+TGG | - | chr4_3:55124389-55124408 | Msa0648670:three_prime_UTR | 60.0% | |
| CACCACCACCGGGAACCTTT+GGG | + | chr4_3:55124394-55124413 | None:intergenic | 60.0% | |
| CACGCATCAGTGCCAGACAC+CGG | - | chr4_3:55124598-55124617 | Msa0648670:exon | 60.0% | |
| CCACCACCACCGGGAACCTT+TGG | + | chr4_3:55124395-55124414 | None:intergenic | 65.0% | |
| ! | CCAAAGGTTCCCGGTGGTGG+TGG | - | chr4_3:55124392-55124411 | Msa0648670:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55124368 | 55128149 | 55124368 | ID=Msa0648670;Name=Msa0648670 |
| chr4_3 | mRNA | 55124368 | 55128149 | 55124368 | ID=Msa0648670-mRNA-1;Parent=Msa0648670;Name=Msa0648670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.8|1|1|1|5|245|279 |
| chr4_3 | exon | 55124368 | 55124807 | 55124368 | ID=Msa0648670-mRNA-1:exon:14071;Parent=Msa0648670-mRNA-1 |
| chr4_3 | exon | 55125256 | 55125468 | 55125256 | ID=Msa0648670-mRNA-1:exon:14070;Parent=Msa0648670-mRNA-1 |
| chr4_3 | exon | 55125660 | 55125830 | 55125660 | ID=Msa0648670-mRNA-1:exon:14069;Parent=Msa0648670-mRNA-1 |
| chr4_3 | exon | 55126735 | 55126851 | 55126735 | ID=Msa0648670-mRNA-1:exon:14068;Parent=Msa0648670-mRNA-1 |
| chr4_3 | exon | 55128006 | 55128149 | 55128006 | ID=Msa0648670-mRNA-1:exon:14067;Parent=Msa0648670-mRNA-1 |
| chr4_3 | CDS | 55128006 | 55128149 | 55128006 | ID=Msa0648670-mRNA-1:cds;Parent=Msa0648670-mRNA-1 |
| chr4_3 | CDS | 55126735 | 55126851 | 55126735 | ID=Msa0648670-mRNA-1:cds;Parent=Msa0648670-mRNA-1 |
| chr4_3 | CDS | 55125660 | 55125830 | 55125660 | ID=Msa0648670-mRNA-1:cds;Parent=Msa0648670-mRNA-1 |
| chr4_3 | CDS | 55125256 | 55125468 | 55125256 | ID=Msa0648670-mRNA-1:cds;Parent=Msa0648670-mRNA-1 |
| chr4_3 | CDS | 55124613 | 55124807 | 55124613 | ID=Msa0648670-mRNA-1:cds;Parent=Msa0648670-mRNA-1 |
| chr4_3 | three_prime_UTR | 55124368 | 55124612 | 55124368 | ID=Msa0648670-mRNA-1:three_prime_utr;Parent=Msa0648670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
