Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648620 | XP_024638675.1 | 94.276 | 297 | 10 | 1 | 1 | 297 | 1 | 290 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648620 | sp|O49460|PHB1_ARATH | 81.633 | 294 | 47 | 1 | 3 | 296 | 1 | 287 | 4.33e-164 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040220 | Msa0648620 | 0.813230 | 2.843405e-51 | -8.615850e-47 |
| Msa0068970 | Msa0648620 | 0.801123 | 1.044663e-48 | -8.615850e-47 |
| Msa0648620 | Msa0648670 | 0.987308 | 8.564329e-170 | -8.615850e-47 |
| Msa0648620 | Msa0728870 | 0.801379 | 9.257004e-49 | -8.615850e-47 |
| Msa0648620 | Msa0790450 | 0.801710 | 7.919477e-49 | -8.615850e-47 |
| Msa0648620 | Msa1040160 | 0.812065 | 5.113306e-51 | -8.615850e-47 |
| Msa0648620 | Msa1041680 | 0.805637 | 1.212646e-49 | -8.615850e-47 |
| Msa0648620 | Msa1083370 | 0.811316 | 7.442242e-51 | -8.615850e-47 |
| Msa0648620 | Msa1091290 | 0.812524 | 4.060899e-51 | -8.615850e-47 |
| Msa0648620 | Msa1106870 | 0.807760 | 4.317824e-50 | -8.615850e-47 |
| Msa0648620 | Msa1116940 | 0.900377 | 7.789626e-78 | -8.615850e-47 |
| Msa0648620 | Msa1136880 | 0.895266 | 1.128232e-75 | -8.615850e-47 |
| Msa0648620 | Msa1136980 | 0.842313 | 2.790021e-58 | -8.615850e-47 |
| Msa0648620 | Msa1166570 | 0.801287 | 9.669976e-49 | -8.615850e-47 |
| Msa0648620 | Msa1169940 | 0.824807 | 6.606553e-54 | -8.615850e-47 |
| Msa0648620 | Msa1218610 | 0.800829 | 1.199191e-48 | -8.615850e-47 |
| Msa0648620 | Msa1237040 | 0.854015 | 1.630893e-61 | -8.615850e-47 |
| Msa0648620 | Msa1258540 | 0.818144 | 2.284214e-52 | -8.615850e-47 |
| Msa0648620 | Msa1278130 | 0.835579 | 1.545589e-56 | -8.615850e-47 |
| Msa0648620 | Msa1284060 | 0.811131 | 8.163243e-51 | -8.615850e-47 |
| Msa0648620 | Msa1317390 | 0.821793 | 3.342236e-53 | -8.615850e-47 |
| Msa0648620 | Msa1332230 | 0.819122 | 1.370880e-52 | -8.615850e-47 |
| Msa0648620 | Msa1341780 | 0.852767 | 3.719246e-61 | -8.615850e-47 |
| Msa0648620 | Msa1344190 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0648620 | Msa1371410 | 0.826490 | 2.636955e-54 | -8.615850e-47 |
| Msa0648620 | Msa1385750 | 0.825335 | 4.958162e-54 | -8.615850e-47 |
| Msa0648620 | Msa1409220 | 0.824523 | 7.709699e-54 | -8.615850e-47 |
| Msa0648620 | Msa1415620 | 0.836900 | 7.133945e-57 | -8.615850e-47 |
| Msa0648620 | Msa1433590 | 0.814992 | 1.161350e-51 | -8.615850e-47 |
| Msa0648620 | Msa1434120 | 0.817033 | 4.067938e-52 | -8.615850e-47 |
| Msa0648620 | Msa1444240 | 0.820029 | 8.512601e-53 | -8.615850e-47 |
| Msa0648620 | Msa1450560 | 0.802772 | 4.788209e-49 | -8.615850e-47 |
| Msa0648620 | Msa1456160 | 0.819831 | 9.447941e-53 | -8.615850e-47 |
| Msa0144810 | Msa0648620 | 0.808405 | 3.148445e-50 | -8.615850e-47 |
| Msa0426090 | Msa0648620 | 0.809584 | 1.760428e-50 | -8.615850e-47 |
| Msa0426250 | Msa0648620 | 0.815599 | 8.511761e-52 | -8.615850e-47 |
| Msa0432750 | Msa0648620 | 0.841051 | 6.004786e-58 | -8.615850e-47 |
| Msa0472480 | Msa0648620 | 0.806667 | 7.359428e-50 | -8.615850e-47 |
| Msa0475810 | Msa0648620 | 0.806421 | 8.292127e-50 | -8.615850e-47 |
| Msa0479980 | Msa0648620 | 0.839749 | 1.315177e-57 | -8.615850e-47 |
| Msa0482200 | Msa0648620 | 0.807700 | 4.447439e-50 | -8.615850e-47 |
| Msa0340560 | Msa0648620 | 0.801801 | 7.586345e-49 | -8.615850e-47 |
| Msa0486070 | Msa0648620 | 0.803004 | 4.286375e-49 | -8.615850e-47 |
| Msa0528750 | Msa0648620 | 0.801354 | 9.365957e-49 | -8.615850e-47 |
| Msa0528820 | Msa0648620 | 0.821885 | 3.182805e-53 | -8.615850e-47 |
| Msa0554210 | Msa0648620 | 0.850505 | 1.626454e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648620 | MtrunA17_Chr4g0040101 | 94.178 | 292 | 10 | 1 | 6 | 297 | 1 | 285 | 0.0 | 549 |
| Msa0648620 | MtrunA17_Chr2g0325011 | 85.017 | 287 | 36 | 1 | 10 | 296 | 5 | 284 | 3.98e-177 | 490 |
| Msa0648620 | MtrunA17_Chr8g0356051 | 52.191 | 251 | 112 | 2 | 28 | 277 | 22 | 265 | 6.59e-87 | 261 |
| Msa0648620 | MtrunA17_Chr3g0079011 | 50.368 | 272 | 126 | 4 | 17 | 286 | 10 | 274 | 1.37e-86 | 260 |
| Msa0648620 | MtrunA17_Chr5g0444361 | 30.909 | 165 | 106 | 2 | 28 | 192 | 22 | 178 | 1.92e-22 | 92.0 |
| Msa0648620 | MtrunA17_Chr6g0449171 | 34.483 | 145 | 57 | 1 | 105 | 249 | 1 | 107 | 4.03e-18 | 78.2 |
| Msa0648620 | MtrunA17_Chr5g0444371 | 34.146 | 123 | 66 | 1 | 70 | 192 | 47 | 154 | 3.47e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648620 | AT4G28510.1 | 81.633 | 294 | 47 | 1 | 3 | 296 | 1 | 287 | 4.41e-165 | 460 |
| Msa0648620 | AT2G20530.2 | 78.451 | 297 | 53 | 2 | 1 | 297 | 1 | 286 | 6.14e-164 | 457 |
| Msa0648620 | AT2G20530.1 | 78.451 | 297 | 53 | 2 | 1 | 297 | 1 | 286 | 6.14e-164 | 457 |
| Msa0648620 | AT1G03860.1 | 78.425 | 292 | 54 | 2 | 1 | 292 | 1 | 283 | 6.21e-164 | 457 |
| Msa0648620 | AT1G03860.3 | 78.425 | 292 | 54 | 2 | 1 | 292 | 1 | 283 | 6.21e-164 | 457 |
| Msa0648620 | AT5G44140.1 | 71.930 | 285 | 73 | 1 | 3 | 287 | 1 | 278 | 2.02e-148 | 417 |
| Msa0648620 | AT1G03860.2 | 85.780 | 218 | 31 | 0 | 75 | 292 | 1 | 218 | 1.66e-129 | 367 |
| Msa0648620 | AT3G27280.1 | 48.897 | 272 | 130 | 3 | 17 | 286 | 11 | 275 | 1.52e-86 | 260 |
| Msa0648620 | AT3G27280.2 | 48.897 | 272 | 130 | 3 | 17 | 286 | 11 | 275 | 1.52e-86 | 260 |
| Msa0648620 | AT5G40770.1 | 50.382 | 262 | 122 | 2 | 17 | 277 | 11 | 265 | 3.61e-85 | 257 |
| Msa0648620 | AT5G14300.1 | 44.444 | 243 | 101 | 4 | 36 | 277 | 22 | 231 | 1.02e-66 | 209 |
Find 82 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATCAATTGAGCACTTT+TGG | 0.231448 | 4_3:+55082024 | None:intergenic |
| TAACTAACAGTGAATGAAAA+TGG | 0.236284 | 4_3:+55085189 | None:intergenic |
| CTTGGTGGACTTGCTGTCTA+TGG | 0.237252 | 4_3:-55085297 | Msa0648620:CDS |
| TTGATTAAAGTTAGCATTCT+TGG | 0.252178 | 4_3:-55085315 | Msa0648620:CDS |
| GAATCTCCAGGATTTAAAAT+TGG | 0.279612 | 4_3:-55081879 | Msa0648620:CDS |
| TTCGATAGACCGTTGGTAAT+TGG | 0.291628 | 4_3:+55083013 | None:intergenic |
| CAGCTTTGCAAACTGAAATA+TGG | 0.292358 | 4_3:-55081740 | Msa0648620:three_prime_UTR |
| GAGATAAGGGATGTTAAATA+AGG | 0.302415 | 4_3:-55081671 | Msa0648620:three_prime_UTR |
| CATTTAGTGGAGAGCACTTC+AGG | 0.305741 | 4_3:-55084000 | Msa0648620:CDS |
| CATCCAGTGCAATGTTGAAT+TGG | 0.307846 | 4_3:+55082648 | None:intergenic |
| CCACCACCACCGGGAACCTT+TGG | 0.317038 | 4_3:+55085348 | None:intergenic |
| TCTATCACAAGTTTGACTTT+TGG | 0.348882 | 4_3:-55082620 | Msa0648620:CDS |
| ATCATAATATGTGTTCCTTC+AGG | 0.372217 | 4_3:+55084069 | None:intergenic |
| TGCATTCAAGAAAACCTTGT+TGG | 0.399906 | 4_3:+55081916 | None:intergenic |
| GTCTATAAATGCAGGGTTGT+TGG | 0.403645 | 4_3:+55081991 | None:intergenic |
| ATGGAACATTTGAGAGATAA+GGG | 0.407423 | 4_3:-55081684 | Msa0648620:three_prime_UTR |
| AATGGAACATTTGAGAGATA+AGG | 0.407947 | 4_3:-55081685 | Msa0648620:three_prime_UTR |
| CACCACCACCGGGAACCTTT+GGG | 0.411013 | 4_3:+55085349 | None:intergenic |
| GTCAAGATCCCAAAGGTTCC+CGG | 0.419171 | 4_3:-55085357 | Msa0648620:CDS |
| TTCCTCAAGTCTATAAATGC+AGG | 0.423117 | 4_3:+55081983 | None:intergenic |
| ATTGTCTTTAACCGTGTTGT+TGG | 0.431088 | 4_3:-55085231 | Msa0648620:CDS |
| ATCCCAAAGGTTCCCGGTGG+TGG | 0.434393 | 4_3:-55085351 | Msa0648620:CDS |
| GCCAAAAGTGCTCAATTGAT+TGG | 0.439483 | 4_3:-55082025 | Msa0648620:CDS |
| GTTTCCATTCTCCATCTTTG+TGG | 0.440230 | 4_3:-55081615 | Msa0648620:three_prime_UTR |
| AGGCTGTTAGTCGAGAAATA+AGG | 0.442888 | 4_3:-55082694 | Msa0648620:CDS |
| TTCTTGAGCAGCAACCTGCT+TGG | 0.447199 | 4_3:+55082571 | None:intergenic |
| TCGTGCACGACCTCATTTAG+TGG | 0.454933 | 4_3:-55084013 | Msa0648620:CDS |
| TTTCCATTCTCCATCTTTGT+GGG | 0.455212 | 4_3:-55081614 | Msa0648620:three_prime_UTR |
| AGCGTTTCATGTATAATAGA+AGG | 0.462263 | 4_3:+55082958 | None:intergenic |
| ATCCAGTGCAATGTTGAATT+GGG | 0.464199 | 4_3:+55082649 | None:intergenic |
| CCAAAGGTTCCCGGTGGTGG+TGG | 0.465351 | 4_3:-55085348 | Msa0648620:CDS |
| AACACTTTGTATAATGTTGA+GGG | 0.467807 | 4_3:-55085267 | Msa0648620:CDS |
| GGATCTCTTGCTGAATCTCC+AGG | 0.469133 | 4_3:-55081891 | Msa0648620:CDS |
| TGTTGTTGGTGTCAAGGATA+AGG | 0.472048 | 4_3:-55085217 | Msa0648620:CDS |
| ATCACAGGCCTCTCAAACCA+TGG | 0.472479 | 4_3:+55084045 | None:intergenic |
| ACATAACTATTTCTTTCCAC+TGG | 0.472566 | 4_3:+55081853 | None:intergenic |
| AGCAGAAATTCCACCACCAC+CGG | 0.480850 | 4_3:+55085338 | None:intergenic |
| AGCTGCAATTGAAGCCAAGC+AGG | 0.481447 | 4_3:-55082585 | Msa0648620:CDS |
| ACCAACGGTCTATCGAACTC+TGG | 0.482518 | 4_3:-55083007 | Msa0648620:CDS |
| TATCCCACAAAGATGGAGAA+TGG | 0.490042 | 4_3:+55081611 | None:intergenic |
| TAAGGAAGATATTGACTGAA+AGG | 0.495116 | 4_3:-55082676 | Msa0648620:CDS |
| TAGACCGTTGGTAATTGGTC+TGG | 0.503898 | 4_3:+55083018 | None:intergenic |
| TAACCGTGTTGTTGGTGTCA+AGG | 0.506383 | 4_3:-55085223 | Msa0648620:CDS |
| ATTAAAGTTAGCATTCTTGG+TGG | 0.509506 | 4_3:-55085312 | Msa0648620:CDS |
| AAGGAAGATATTGACTGAAA+GGG | 0.510989 | 4_3:-55082675 | Msa0648620:CDS |
| AAATTACCATTTGGAGATCA+CGG | 0.515095 | 4_3:+55083974 | None:intergenic |
| TGGGTGAGAATTATAATGAA+AGG | 0.516327 | 4_3:-55082987 | Msa0648620:CDS |
| GAGGTCATATCCCACAAAGA+TGG | 0.517734 | 4_3:+55081604 | None:intergenic |
| GAGGAAAATTGAAGCTGCTA+GGG | 0.523704 | 4_3:-55081966 | Msa0648620:CDS |
| GGGTGAGAATTATAATGAAA+GGG | 0.533630 | 4_3:-55082986 | Msa0648620:CDS |
| AAACACTTTGTATAATGTTG+AGG | 0.536366 | 4_3:-55085268 | Msa0648620:CDS |
| ACCCTGCATTTATAGACTTG+AGG | 0.536732 | 4_3:-55081985 | Msa0648620:CDS |
| AAGTGCTATTATTAGAGCAC+AGG | 0.538979 | 4_3:-55082501 | Msa0648620:intron |
| GTTGGTAATTGGTCTGGCAC+GGG | 0.547210 | 4_3:+55083024 | None:intergenic |
| TCCTCAAGTCTATAAATGCA+GGG | 0.549653 | 4_3:+55081984 | None:intergenic |
| TGAGGAAAATTGAAGCTGCT+AGG | 0.555994 | 4_3:-55081967 | Msa0648620:CDS |
| CGTTGGTAATTGGTCTGGCA+CGG | 0.557172 | 4_3:+55083023 | None:intergenic |
| CTCCCAATTCAACATTGCAC+TGG | 0.559449 | 4_3:-55082651 | Msa0648620:CDS |
| TTATGATCCCATGGTTTGAG+AGG | 0.566462 | 4_3:-55084053 | Msa0648620:CDS |
| AATTGCAAATTCTGCCAACA+AGG | 0.567716 | 4_3:-55081930 | Msa0648620:CDS |
| AGGAAGCCGTGATCTCCAAA+TGG | 0.568285 | 4_3:-55083980 | Msa0648620:intron |
| TATATGCAGGTCTATCCTGA+AGG | 0.571690 | 4_3:-55084084 | Msa0648620:intron |
| CCAACGGTCTATCGAACTCT+GGG | 0.576164 | 4_3:-55083006 | Msa0648620:CDS |
| GAAGTGCTCTCCACTAAATG+AGG | 0.579441 | 4_3:+55084003 | None:intergenic |
| AGCTGCTAGGGAAATCGCTA+AGG | 0.579747 | 4_3:-55081954 | Msa0648620:CDS |
| GAACACATATTATGATCCCA+TGG | 0.591378 | 4_3:-55084062 | Msa0648620:CDS |
| TTTCATGTATAATAGAAGGC+AGG | 0.592510 | 4_3:+55082962 | None:intergenic |
| TTCTATCAACTGTTCACATG+AGG | 0.601973 | 4_3:-55081765 | Msa0648620:three_prime_UTR |
| GATTTAAAATTGGAGTCCAG+TGG | 0.610027 | 4_3:-55081869 | Msa0648620:CDS |
| CCCAGAGTTCGATAGACCGT+TGG | 0.613107 | 4_3:+55083006 | None:intergenic |
| TCACAGGCCTCTCAAACCAT+GGG | 0.623389 | 4_3:+55084046 | None:intergenic |
| CAGTGCAATGTTGAATTGGG+AGG | 0.624755 | 4_3:+55082652 | None:intergenic |
| GCACGAACATCATAGATCAC+AGG | 0.624896 | 4_3:+55084030 | None:intergenic |
| GCAGAAATTCCACCACCACC+GGG | 0.625221 | 4_3:+55085339 | None:intergenic |
| ACATGAAACGCTCAAATCTG+TGG | 0.625780 | 4_3:-55082947 | Msa0648620:CDS |
| TCAGCTCATTACTCAGAGAG+AGG | 0.636764 | 4_3:-55082905 | Msa0648620:intron |
| TATCCTTGACACCAACAACA+CGG | 0.647254 | 4_3:+55085220 | None:intergenic |
| CAACAACGTCAAGATCCCAA+AGG | 0.651733 | 4_3:-55085364 | Msa0648620:CDS |
| ACTTTGTATAATGTTGAGGG+TGG | 0.664841 | 4_3:-55085264 | Msa0648620:CDS |
| TCTCTGAGTAATGAGCTGAC+TGG | 0.669211 | 4_3:+55082909 | None:intergenic |
| CGTGCCAGACCAATTACCAA+CGG | 0.684962 | 4_3:-55083022 | Msa0648620:CDS |
| AAGATCCCAAAGGTTCCCGG+TGG | 0.741647 | 4_3:-55085354 | Msa0648620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATAAGTCAATTTT+GGG | + | chr4_3:55082080-55082099 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATAAGTCAATTT+TGG | + | chr4_3:55082081-55082100 | None:intergenic | 10.0% |
| !! | AAATAGAAACATATTAAAAT+AGG | + | chr4_3:55082808-55082827 | None:intergenic | 10.0% |
| !! | TAATAATGAATATGAATTAT+GGG | + | chr4_3:55083688-55083707 | None:intergenic | 10.0% |
| !! | ATAATAATGAATATGAATTA+TGG | + | chr4_3:55083689-55083708 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTGTATGATT+TGG | + | chr4_3:55084603-55084622 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAGTCAATTTTG+GGG | + | chr4_3:55082079-55082098 | None:intergenic | 15.0% |
| !! | CAATAATATGATAAAAATGA+CGG | + | chr4_3:55082380-55082399 | None:intergenic | 15.0% |
| !! | CATATTAAAATAGGTTTAAT+AGG | + | chr4_3:55082799-55082818 | None:intergenic | 15.0% |
| !!! | CTACTTTAATTTATTATGAT+GGG | + | chr4_3:55083441-55083460 | None:intergenic | 15.0% |
| !!! | TCTACTTTAATTTATTATGA+TGG | + | chr4_3:55083442-55083461 | None:intergenic | 15.0% |
| !!! | AGAATATCATTTTAGATGAT+TGG | - | chr4_3:55082146-55082165 | Msa0648620:intron | 20.0% |
| !!! | GAATATCATTTTAGATGATT+GGG | - | chr4_3:55082147-55082166 | Msa0648620:intron | 20.0% |
| !!! | TTTAATCTTCTTCTTTGTTT+AGG | - | chr4_3:55082218-55082237 | Msa0648620:intron | 20.0% |
| !! | AAAAAGCTTCTATACTAAAA+AGG | + | chr4_3:55082429-55082448 | None:intergenic | 20.0% |
| !!! | TTTTAGTATAGAAGCTTTTT+AGG | - | chr4_3:55082429-55082448 | Msa0648620:intron | 20.0% |
| !!! | TTTAGTATAGAAGCTTTTTA+GGG | - | chr4_3:55082430-55082449 | Msa0648620:intron | 20.0% |
| !! | CATAAACTGAACTAAAAAAT+AGG | - | chr4_3:55082632-55082651 | Msa0648620:CDS | 20.0% |
| !!! | AACTAACAATTCAGTTTTTT+AGG | - | chr4_3:55082708-55082727 | Msa0648620:intron | 20.0% |
| !!! | CTATTTTAATATGTTTCGTT+AGG | - | chr4_3:55082822-55082841 | Msa0648620:intron | 20.0% |
| !! | TATATTGATATACTACAACA+AGG | + | chr4_3:55082871-55082890 | None:intergenic | 20.0% |
| !! | AAACAAAAGAAATTACCATT+TGG | + | chr4_3:55083024-55083043 | None:intergenic | 20.0% |
| !! | CAACATTAAAATGACTTTAA+TGG | + | chr4_3:55083177-55083196 | None:intergenic | 20.0% |
| !! | TAGTGTACATAGTAATAATT+AGG | - | chr4_3:55083479-55083498 | Msa0648620:intron | 20.0% |
| !! | AGTGTACATAGTAATAATTA+GGG | - | chr4_3:55083480-55083499 | Msa0648620:intron | 20.0% |
| !!! | TCTAAAATGATCCAAATTAT+AGG | - | chr4_3:55084272-55084291 | Msa0648620:intron | 20.0% |
| !! | TTTGAGAAAAAAGTTCAATA+GGG | + | chr4_3:55084871-55084890 | None:intergenic | 20.0% |
| !!! | TTTTGAGAAAAAAGTTCAAT+AGG | + | chr4_3:55084872-55084891 | None:intergenic | 20.0% |
| !!! | GATGTTAAATAAGGTTTTAT+TGG | - | chr4_3:55085324-55085343 | Msa0648620:CDS | 20.0% |
| ! | TTGATTAAAGTTAGCATTCT+TGG | - | chr4_3:55081671-55081690 | Msa0648620:three_prime_UTR | 25.0% |
| ! | AAACACTTTGTATAATGTTG+AGG | - | chr4_3:55081718-55081737 | Msa0648620:three_prime_UTR | 25.0% |
| ! | AACACTTTGTATAATGTTGA+GGG | - | chr4_3:55081719-55081738 | Msa0648620:three_prime_UTR | 25.0% |
| ! | TAACTAACAGTGAATGAAAA+TGG | + | chr4_3:55081800-55081819 | None:intergenic | 25.0% |
| ! | CTGATTCTAAATTGAAAGTT+CGG | - | chr4_3:55082669-55082688 | Msa0648620:CDS | 25.0% |
| ! | TAAGAACAAGAAAAAATAGC+AGG | + | chr4_3:55083049-55083068 | None:intergenic | 25.0% |
| ! | ACTTTAGTACACTTGATTAT+AGG | - | chr4_3:55083083-55083102 | Msa0648620:intron | 25.0% |
| !!! | TTTAATGGACTAAACTGAAA+GGG | + | chr4_3:55083162-55083181 | None:intergenic | 25.0% |
| ! | TATGTGTGTAAAAACCTTAA+AGG | + | chr4_3:55083344-55083363 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGTAATGTCCT+TGG | + | chr4_3:55083389-55083408 | None:intergenic | 25.0% |
| ! | TAAAGTAGAATATGATGCTT+TGG | - | chr4_3:55083453-55083472 | Msa0648620:intron | 25.0% |
| ! | GTGTACATAGTAATAATTAG+GGG | - | chr4_3:55083481-55083500 | Msa0648620:intron | 25.0% |
| ! | TGTACATAGTAATAATTAGG+GGG | - | chr4_3:55083482-55083501 | Msa0648620:intron | 25.0% |
| ! | AATGTGATACAATTGAGAAT+TGG | + | chr4_3:55083644-55083663 | None:intergenic | 25.0% |
| ! | AACATAAATTTCGAATTCCA+TGG | + | chr4_3:55083747-55083766 | None:intergenic | 25.0% |
| ! | ACACAGTAATAAAGTTAGAA+TGG | + | chr4_3:55083806-55083825 | None:intergenic | 25.0% |
| ! | TAACTTTATTACTGTGTAGA+CGG | - | chr4_3:55083809-55083828 | Msa0648620:intron | 25.0% |
| ! | ATTGTGCATAAGAAAAATGT+GGG | + | chr4_3:55083845-55083864 | None:intergenic | 25.0% |
| ! | TATTGTGCATAAGAAAAATG+TGG | + | chr4_3:55083846-55083865 | None:intergenic | 25.0% |
| ! | CATTTCCATGTAATCTATTA+TGG | - | chr4_3:55083892-55083911 | Msa0648620:intron | 25.0% |
| ! | AAGATCCATAATAGATTACA+TGG | + | chr4_3:55083900-55083919 | None:intergenic | 25.0% |
| ! | TCAACTAATACTGGATTAAT+TGG | - | chr4_3:55084137-55084156 | Msa0648620:intron | 25.0% |
| ! | CAACTAATACTGGATTAATT+GGG | - | chr4_3:55084138-55084157 | Msa0648620:intron | 25.0% |
| ! | AAAATGAATCACAATCATAC+AGG | - | chr4_3:55084235-55084254 | Msa0648620:intron | 25.0% |
| ! | TTGAGAAAAAAGTTCAATAG+GGG | + | chr4_3:55084870-55084889 | None:intergenic | 25.0% |
| ! | AAAAGTAACTCCTATGTATT+GGG | + | chr4_3:55084895-55084914 | None:intergenic | 25.0% |
| ! | AAAAAGTAACTCCTATGTAT+TGG | + | chr4_3:55084896-55084915 | None:intergenic | 25.0% |
| ! | TTCAACTTCTCATTACTTAA+TGG | - | chr4_3:55084914-55084933 | Msa0648620:intron | 25.0% |
| !!! | ATGGTTTATTTTTGACATAC+AGG | - | chr4_3:55084933-55084952 | Msa0648620:intron | 25.0% |
| !!! | TGGTTTATTTTTGACATACA+GGG | - | chr4_3:55084934-55084953 | Msa0648620:intron | 25.0% |
| !! | GATTGTCATTATCTTTTCAA+TGG | - | chr4_3:55085283-55085302 | Msa0648620:CDS | 25.0% |
| ATTAAAGTTAGCATTCTTGG+TGG | - | chr4_3:55081674-55081693 | Msa0648620:three_prime_UTR | 30.0% | |
| ATTCTATCATCTCTACAGTA+GGG | + | chr4_3:55082131-55082150 | None:intergenic | 30.0% | |
| TATTCTATCATCTCTACAGT+AGG | + | chr4_3:55082132-55082151 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCAGTCTCATGAT+CGG | - | chr4_3:55082279-55082298 | Msa0648620:intron | 30.0% |
| TCATGTTTCCATAACATAGA+CGG | + | chr4_3:55082321-55082340 | None:intergenic | 30.0% | |
| ! | TTTAGTTCACAGTTTCAGTT+TGG | - | chr4_3:55082742-55082761 | Msa0648620:intron | 30.0% |
| ! | TAGTATGCCTTTTTATATGC+AGG | - | chr4_3:55082889-55082908 | Msa0648620:intron | 30.0% |
| ATCATAATATGTGTTCCTTC+AGG | + | chr4_3:55082920-55082939 | None:intergenic | 30.0% | |
| AAATTACCATTTGGAGATCA+CGG | + | chr4_3:55083015-55083034 | None:intergenic | 30.0% | |
| ATCAAGTGTACTAAAGTACA+TGG | + | chr4_3:55083080-55083099 | None:intergenic | 30.0% | |
| ! | GATAATAGCAACTTGTCTTT+TGG | - | chr4_3:55083105-55083124 | Msa0648620:intron | 30.0% |
| !! | CTTTAATGGACTAAACTGAA+AGG | + | chr4_3:55083163-55083182 | None:intergenic | 30.0% |
| !! | AAAGGACACTCATTTTGAAA+CGG | + | chr4_3:55083326-55083345 | None:intergenic | 30.0% |
| TTCAAAATGAGTGTCCTTTA+AGG | - | chr4_3:55083327-55083346 | Msa0648620:intron | 30.0% | |
| AAATGCAATAATGTTGTCCA+AGG | - | chr4_3:55083369-55083388 | Msa0648620:intron | 30.0% | |
| ACTAAATTGAAAAGCGAGAA+TGG | - | chr4_3:55083525-55083544 | Msa0648620:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+TGG | - | chr4_3:55083582-55083601 | Msa0648620:intron | 30.0% |
| AATGTTACAATCTATGACCA+TGG | - | chr4_3:55083727-55083746 | Msa0648620:intron | 30.0% | |
| TTGTGCATAAGAAAAATGTG+GGG | + | chr4_3:55083844-55083863 | None:intergenic | 30.0% | |
| TGAAACTGTGATACAGATTA+TGG | + | chr4_3:55083874-55083893 | None:intergenic | 30.0% | |
| !!! | TATGGATCTTTTATTTTGCC+AGG | - | chr4_3:55083910-55083929 | Msa0648620:intron | 30.0% |
| !! | TTATTTTGCCAGGTGAAAAT+TGG | - | chr4_3:55083920-55083939 | Msa0648620:intron | 30.0% |
| TGGGTGAGAATTATAATGAA+AGG | - | chr4_3:55083999-55084018 | Msa0648620:CDS | 30.0% | |
| GGGTGAGAATTATAATGAAA+GGG | - | chr4_3:55084000-55084019 | Msa0648620:CDS | 30.0% | |
| TTTCATGTATAATAGAAGGC+AGG | + | chr4_3:55084027-55084046 | None:intergenic | 30.0% | |
| AGCGTTTCATGTATAATAGA+AGG | + | chr4_3:55084031-55084050 | None:intergenic | 30.0% | |
| GTATTAGTTGAACAGAAGAT+AGG | + | chr4_3:55084128-55084147 | None:intergenic | 30.0% | |
| ATCTTCTGTTCAACTAATAC+TGG | - | chr4_3:55084128-55084147 | Msa0648620:intron | 30.0% | |
| ATTCCAACTGATATGTAAAG+AGG | + | chr4_3:55084170-55084189 | None:intergenic | 30.0% | |
| ! | TAAGGAAGATATTGACTGAA+AGG | - | chr4_3:55084310-55084329 | Msa0648620:intron | 30.0% |
| ! | AAGGAAGATATTGACTGAAA+GGG | - | chr4_3:55084311-55084330 | Msa0648620:intron | 30.0% |
| !! | TCTATCACAAGTTTGACTTT+TGG | - | chr4_3:55084366-55084385 | Msa0648620:intron | 30.0% |
| !! | CTATCACAAGTTTGACTTTT+GGG | - | chr4_3:55084367-55084386 | Msa0648620:intron | 30.0% |
| TTATGAACCATCTCATATGT+AGG | + | chr4_3:55084529-55084548 | None:intergenic | 30.0% | |
| TGTTTGAGTGATATAAACTC+TGG | - | chr4_3:55084668-55084687 | Msa0648620:intron | 30.0% | |
| GATATAAACTCTGGATAATC+AGG | - | chr4_3:55084677-55084696 | Msa0648620:intron | 30.0% | |
| TTTCTCAAAACCCAATACAT+AGG | - | chr4_3:55084882-55084901 | Msa0648620:intron | 30.0% | |
| ! | GAATCTCCAGGATTTAAAAT+TGG | - | chr4_3:55085107-55085126 | Msa0648620:intron | 30.0% |
| ! | ACATAACTATTTCTTTCCAC+TGG | + | chr4_3:55085136-55085155 | None:intergenic | 30.0% |
| AATGGAACATTTGAGAGATA+AGG | - | chr4_3:55085301-55085320 | Msa0648620:CDS | 30.0% | |
| ATGGAACATTTGAGAGATAA+GGG | - | chr4_3:55085302-55085321 | Msa0648620:CDS | 30.0% | |
| GAGATAAGGGATGTTAAATA+AGG | - | chr4_3:55085315-55085334 | Msa0648620:CDS | 30.0% | |
| ACTTTGTATAATGTTGAGGG+TGG | - | chr4_3:55081722-55081741 | Msa0648620:three_prime_UTR | 35.0% | |
| ATTGTCTTTAACCGTGTTGT+TGG | - | chr4_3:55081755-55081774 | Msa0648620:three_prime_UTR | 35.0% | |
| ACACTTATTGAAGATGTGTC+CGG | + | chr4_3:55081866-55081885 | None:intergenic | 35.0% | |
| ACACATCTTCAATAAGTGTC+AGG | - | chr4_3:55081867-55081886 | Msa0648620:CDS | 35.0% | |
| CACATCTTCAATAAGTGTCA+GGG | - | chr4_3:55081868-55081887 | Msa0648620:CDS | 35.0% | |
| ACATCTTCAATAAGTGTCAG+GGG | - | chr4_3:55081869-55081888 | Msa0648620:CDS | 35.0% | |
| ! | GCTAATTTAAAGTGAGTTGC+AGG | - | chr4_3:55081932-55081951 | Msa0648620:CDS | 35.0% |
| ! | CTTCTTTGTTTAGGTTCTCA+TGG | - | chr4_3:55082227-55082246 | Msa0648620:intron | 35.0% |
| ATTTCATGCCGTCTATGTTA+TGG | - | chr4_3:55082310-55082329 | Msa0648620:intron | 35.0% | |
| AAAAATCTTCTGCTCTGGTT+GGG | + | chr4_3:55082354-55082373 | None:intergenic | 35.0% | |
| AGATGAAGTGACAGTTGTAT+TGG | + | chr4_3:55082544-55082563 | None:intergenic | 35.0% | |
| ACTTGAACTCTATCGAAGTT+TGG | + | chr4_3:55082593-55082612 | None:intergenic | 35.0% | |
| !!! | CAGTTTTTTAGGTTCAGTTC+TGG | - | chr4_3:55082719-55082738 | Msa0648620:intron | 35.0% |
| ACAAGGTTACTAGTCAACAT+AGG | + | chr4_3:55082854-55082873 | None:intergenic | 35.0% | |
| GGATAGACCTGCATATAAAA+AGG | + | chr4_3:55082899-55082918 | None:intergenic | 35.0% | |
| GAACACATATTATGATCCCA+TGG | - | chr4_3:55082924-55082943 | Msa0648620:CDS | 35.0% | |
| !!! | CTTGTCTTTTGGTTTGAAGT+TGG | - | chr4_3:55083116-55083135 | Msa0648620:intron | 35.0% |
| CATAGATGGCGTGATTTATA+TGG | + | chr4_3:55083226-55083245 | None:intergenic | 35.0% | |
| TATAAATCACGCCATCTATG+TGG | - | chr4_3:55083226-55083245 | Msa0648620:intron | 35.0% | |
| ATAAATCACGCCATCTATGT+GGG | - | chr4_3:55083227-55083246 | Msa0648620:intron | 35.0% | |
| ATATGATACATAAGCCCACA+AGG | + | chr4_3:55083260-55083279 | None:intergenic | 35.0% | |
| !!! | AAGGACACTCATTTTGAAAC+GGG | + | chr4_3:55083325-55083344 | None:intergenic | 35.0% |
| AAATGCATCAATAGGTAACG+AGG | + | chr4_3:55083418-55083437 | None:intergenic | 35.0% | |
| ! | ATGATGGGAAATGCATCAAT+AGG | + | chr4_3:55083426-55083445 | None:intergenic | 35.0% |
| !! | TAATAATTAGGGGGTACTGT+TGG | - | chr4_3:55083491-55083510 | Msa0648620:intron | 35.0% |
| !!! | GACACTCATTTTGAAATGGA+GGG | - | chr4_3:55083586-55083605 | Msa0648620:intron | 35.0% |
| GTGATACAATTGAGAATTGG+TGG | + | chr4_3:55083641-55083660 | None:intergenic | 35.0% | |
| ATGCCTCTTTACATATCAGT+TGG | - | chr4_3:55084164-55084183 | Msa0648620:intron | 35.0% | |
| TCGACTAACAGCCTATAATT+TGG | + | chr4_3:55084286-55084305 | None:intergenic | 35.0% | |
| ATCCAGTGCAATGTTGAATT+GGG | + | chr4_3:55084340-55084359 | None:intergenic | 35.0% | |
| ! | AAGTGCTATTATTAGAGCAC+AGG | - | chr4_3:55084485-55084504 | Msa0648620:intron | 35.0% |
| AAATGAAAAGATCGCTGCAA+TGG | - | chr4_3:55084629-55084648 | Msa0648620:intron | 35.0% | |
| GTTCATTCAAGAGGAAAAAG+TGG | + | chr4_3:55084781-55084800 | None:intergenic | 35.0% | |
| GTCAAATAGGTTCATTCAAG+AGG | + | chr4_3:55084790-55084809 | None:intergenic | 35.0% | |
| ! | ACCAATCAATTGAGCACTTT+TGG | + | chr4_3:55084965-55084984 | None:intergenic | 35.0% |
| TCCTCAAGTCTATAAATGCA+GGG | + | chr4_3:55085005-55085024 | None:intergenic | 35.0% | |
| TTCCTCAAGTCTATAAATGC+AGG | + | chr4_3:55085006-55085025 | None:intergenic | 35.0% | |
| AATTGCAAATTCTGCCAACA+AGG | - | chr4_3:55085056-55085075 | Msa0648620:intron | 35.0% | |
| TGCATTCAAGAAAACCTTGT+TGG | + | chr4_3:55085073-55085092 | None:intergenic | 35.0% | |
| ! | TGGACTCCAATTTTAAATCC+TGG | + | chr4_3:55085116-55085135 | None:intergenic | 35.0% |
| ! | GATTTAAAATTGGAGTCCAG+TGG | - | chr4_3:55085117-55085136 | Msa0648620:intron | 35.0% |
| TTCTATCAACTGTTCACATG+AGG | - | chr4_3:55085221-55085240 | Msa0648620:CDS | 35.0% | |
| CAGCTTTGCAAACTGAAATA+TGG | - | chr4_3:55085246-55085265 | Msa0648620:CDS | 35.0% | |
| TATCCTTGACACCAACAACA+CGG | + | chr4_3:55081769-55081788 | None:intergenic | 40.0% | |
| !! | TGTTGTTGGTGTCAAGGATA+AGG | - | chr4_3:55081769-55081788 | Msa0648620:three_prime_UTR | 40.0% |
| CATCTTCAATAAGTGTCAGG+GGG | - | chr4_3:55081870-55081889 | Msa0648620:CDS | 40.0% | |
| GATGATTGGGTCATGTATGA+AGG | - | chr4_3:55082160-55082179 | Msa0648620:intron | 40.0% | |
| CAAAAATCTTCTGCTCTGGT+TGG | + | chr4_3:55082355-55082374 | None:intergenic | 40.0% | |
| GGTTCAAAAATCTTCTGCTC+TGG | + | chr4_3:55082359-55082378 | None:intergenic | 40.0% | |
| TATATGCAGGTCTATCCTGA+AGG | - | chr4_3:55082902-55082921 | Msa0648620:intron | 40.0% | |
| TTATGATCCCATGGTTTGAG+AGG | - | chr4_3:55082933-55082952 | Msa0648620:CDS | 40.0% | |
| AAACTGAAAGGGTAAGGTGA+GGG | + | chr4_3:55083151-55083170 | None:intergenic | 40.0% | |
| TAAACTGAAAGGGTAAGGTG+AGG | + | chr4_3:55083152-55083171 | None:intergenic | 40.0% | |
| TGGACTAAACTGAAAGGGTA+AGG | + | chr4_3:55083157-55083176 | None:intergenic | 40.0% | |
| !!! | AGGACACTCATTTTGAAACG+GGG | + | chr4_3:55083324-55083343 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAATGG+AGG | - | chr4_3:55083585-55083604 | Msa0648620:intron | 40.0% |
| ! | CTCTAAGTCCAATTTTCACC+TGG | + | chr4_3:55083931-55083950 | None:intergenic | 40.0% |
| !! | TTCGATAGACCGTTGGTAAT+TGG | + | chr4_3:55083976-55083995 | None:intergenic | 40.0% |
| ACATGAAACGCTCAAATCTG+TGG | - | chr4_3:55084039-55084058 | Msa0648620:CDS | 40.0% | |
| AGGCTGTTAGTCGAGAAATA+AGG | - | chr4_3:55084292-55084311 | Msa0648620:intron | 40.0% | |
| CATCCAGTGCAATGTTGAAT+TGG | + | chr4_3:55084341-55084360 | None:intergenic | 40.0% | |
| !! | TCACAAGTTTGACTTTTGGG+AGG | - | chr4_3:55084370-55084389 | Msa0648620:intron | 40.0% |
| !! | CACAAGTTTGACTTTTGGGA+GGG | - | chr4_3:55084371-55084390 | Msa0648620:intron | 40.0% |
| CCATCTCATATGTAGGAATC+AGG | + | chr4_3:55084522-55084541 | None:intergenic | 40.0% | |
| CCTGATTCCTACATATGAGA+TGG | - | chr4_3:55084519-55084538 | Msa0648620:intron | 40.0% | |
| TTCAAGAGGAAAAAGTGGAG+AGG | + | chr4_3:55084776-55084795 | None:intergenic | 40.0% | |
| GAATGAACCTATTTGACGAC+TGG | - | chr4_3:55084793-55084812 | Msa0648620:intron | 40.0% | |
| GATGCATGGATAAGTTGTCA+AGG | - | chr4_3:55084817-55084836 | Msa0648620:intron | 40.0% | |
| CATGGATAAGTTGTCAAGGA+AGG | - | chr4_3:55084821-55084840 | Msa0648620:intron | 40.0% | |
| TTCAATAGGGGTCATGTTGA+AGG | + | chr4_3:55084858-55084877 | None:intergenic | 40.0% | |
| !! | GCCAAAAGTGCTCAATTGAT+TGG | - | chr4_3:55084961-55084980 | Msa0648620:intron | 40.0% |
| GTCTATAAATGCAGGGTTGT+TGG | + | chr4_3:55084998-55085017 | None:intergenic | 40.0% | |
| ACCCTGCATTTATAGACTTG+AGG | - | chr4_3:55085001-55085020 | Msa0648620:intron | 40.0% | |
| TGAGGAAAATTGAAGCTGCT+AGG | - | chr4_3:55085019-55085038 | Msa0648620:intron | 40.0% | |
| GAGGAAAATTGAAGCTGCTA+GGG | - | chr4_3:55085020-55085039 | Msa0648620:intron | 40.0% | |
| ! | CAAGGTTTTCTTGAATGCAG+AGG | - | chr4_3:55085074-55085093 | Msa0648620:intron | 40.0% |
| GTTTCCATTCTCCATCTTTG+TGG | - | chr4_3:55085371-55085390 | Msa0648620:CDS | 40.0% | |
| CAACAACGTCAAGATCCCAA+AGG | - | chr4_3:55081622-55081641 | Msa0648620:three_prime_UTR | 45.0% | |
| !! | TAACCGTGTTGTTGGTGTCA+AGG | - | chr4_3:55081763-55081782 | Msa0648620:three_prime_UTR | 45.0% |
| ACTCCAAAGACCTGCATACT+TGG | - | chr4_3:55082516-55082535 | Msa0648620:CDS | 45.0% | |
| CTCCAAAGACCTGCATACTT+GGG | - | chr4_3:55082517-55082536 | Msa0648620:CDS | 45.0% | |
| TGTATTGGACCCAAGTATGC+AGG | + | chr4_3:55082529-55082548 | None:intergenic | 45.0% | |
| GCACGAACATCATAGATCAC+AGG | + | chr4_3:55082959-55082978 | None:intergenic | 45.0% | |
| ! | GAAGTGCTCTCCACTAAATG+AGG | + | chr4_3:55082986-55083005 | None:intergenic | 45.0% |
| !! | CATTTAGTGGAGAGCACTTC+AGG | - | chr4_3:55082986-55083005 | Msa0648620:CDS | 45.0% |
| ! | ACGGGGGGAGTATATGAAAT+AGG | + | chr4_3:55083307-55083326 | None:intergenic | 45.0% |
| !!! | GACACTCATTTTGAAACGGG+GGG | + | chr4_3:55083322-55083341 | None:intergenic | 45.0% |
| !!! | GGACACTCATTTTGAAACGG+GGG | + | chr4_3:55083323-55083342 | None:intergenic | 45.0% |
| ! | GAGAATTGGTGGTTCAGTTC+AGG | + | chr4_3:55083630-55083649 | None:intergenic | 45.0% |
| !! | TAGACCGTTGGTAATTGGTC+TGG | + | chr4_3:55083971-55083990 | None:intergenic | 45.0% |
| TCTCTGAGTAATGAGCTGAC+TGG | + | chr4_3:55084080-55084099 | None:intergenic | 45.0% | |
| TCAGCTCATTACTCAGAGAG+AGG | - | chr4_3:55084081-55084100 | Msa0648620:intron | 45.0% | |
| CAGTGCAATGTTGAATTGGG+AGG | + | chr4_3:55084337-55084356 | None:intergenic | 45.0% | |
| CTCCCAATTCAACATTGCAC+TGG | - | chr4_3:55084335-55084354 | Msa0648620:intron | 45.0% | |
| ATCGCTGCAATGGTATTTGC+TGG | - | chr4_3:55084639-55084658 | Msa0648620:intron | 45.0% | |
| GAGGAAAAAGTGGAGAGGAA+GGG | + | chr4_3:55084771-55084790 | None:intergenic | 45.0% | |
| AGAGGAAAAAGTGGAGAGGA+AGG | + | chr4_3:55084772-55084791 | None:intergenic | 45.0% | |
| TGCATCACCAGTCGTCAAAT+AGG | + | chr4_3:55084803-55084822 | None:intergenic | 45.0% | |
| ! | ATTTGACGACTGGTGATGCA+TGG | - | chr4_3:55084803-55084822 | Msa0648620:intron | 45.0% |
| !!! | TATATTTTTTTAAAAAACAA+CGG | + | chr4_3:55084570-55084589 | None:intergenic | 5.0% |
| GTCAAGATCCCAAAGGTTCC+CGG | - | chr4_3:55081629-55081648 | Msa0648620:three_prime_UTR | 50.0% | |
| AGCAGAAATTCCACCACCAC+CGG | + | chr4_3:55081651-55081670 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTGCTGTCTA+TGG | - | chr4_3:55081689-55081708 | Msa0648620:three_prime_UTR | 50.0% |
| TTGAAGATGTGTCCGGTGTC+TGG | + | chr4_3:55081859-55081878 | None:intergenic | 50.0% | |
| GACCCAAGTATGCAGGTCTT+TGG | + | chr4_3:55082522-55082541 | None:intergenic | 50.0% | |
| TCACAGGCCTCTCAAACCAT+GGG | + | chr4_3:55082943-55082962 | None:intergenic | 50.0% | |
| ATCACAGGCCTCTCAAACCA+TGG | + | chr4_3:55082944-55082963 | None:intergenic | 50.0% | |
| TCGTGCACGACCTCATTTAG+TGG | - | chr4_3:55082973-55082992 | Msa0648620:CDS | 50.0% | |
| AGGAAGCCGTGATCTCCAAA+TGG | - | chr4_3:55083006-55083025 | Msa0648620:CDS | 50.0% | |
| TGAAAGGGTAAGGTGAGGGA+AGG | + | chr4_3:55083147-55083166 | None:intergenic | 50.0% | |
| AGGTCAACAGCCCACATAGA+TGG | + | chr4_3:55083240-55083259 | None:intergenic | 50.0% | |
| ! | TATGTGGGCTGTTGACCTTG+TGG | - | chr4_3:55083242-55083261 | Msa0648620:intron | 50.0% |
| ! | ATGTGGGCTGTTGACCTTGT+GGG | - | chr4_3:55083243-55083262 | Msa0648620:intron | 50.0% |
| !! | GTTGGTAATTGGTCTGGCAC+GGG | + | chr4_3:55083965-55083984 | None:intergenic | 50.0% |
| !! | CGTTGGTAATTGGTCTGGCA+CGG | + | chr4_3:55083966-55083985 | None:intergenic | 50.0% |
| CGTGCCAGACCAATTACCAA+CGG | - | chr4_3:55083964-55083983 | Msa0648620:intron | 50.0% | |
| ACCAACGGTCTATCGAACTC+TGG | - | chr4_3:55083979-55083998 | Msa0648620:intron | 50.0% | |
| CCAACGGTCTATCGAACTCT+GGG | - | chr4_3:55083980-55083999 | Msa0648620:intron | 50.0% | |
| AGCTGCAATTGAAGCCAAGC+AGG | - | chr4_3:55084401-55084420 | Msa0648620:intron | 50.0% | |
| TTCTTGAGCAGCAACCTGCT+TGG | + | chr4_3:55084418-55084437 | None:intergenic | 50.0% | |
| AGCTGCTAGGGAAATCGCTA+AGG | - | chr4_3:55085032-55085051 | Msa0648620:intron | 50.0% | |
| GGATCTCTTGCTGAATCTCC+AGG | - | chr4_3:55085095-55085114 | Msa0648620:intron | 50.0% | |
| AAGATCCCAAAGGTTCCCGG+TGG | - | chr4_3:55081632-55081651 | Msa0648620:three_prime_UTR | 55.0% | |
| GCAGAAATTCCACCACCACC+GGG | + | chr4_3:55081650-55081669 | None:intergenic | 55.0% | |
| CCCAGAGTTCGATAGACCGT+TGG | + | chr4_3:55083983-55084002 | None:intergenic | 55.0% | |
| AAGTGGAGAGGAAGGGAGCA+GGG | + | chr4_3:55084764-55084783 | None:intergenic | 55.0% | |
| AAAGTGGAGAGGAAGGGAGC+AGG | + | chr4_3:55084765-55084784 | None:intergenic | 55.0% | |
| ATCCCAAAGGTTCCCGGTGG+TGG | - | chr4_3:55081635-55081654 | Msa0648620:three_prime_UTR | 60.0% | |
| CACCACCACCGGGAACCTTT+GGG | + | chr4_3:55081640-55081659 | None:intergenic | 60.0% | |
| CACGCATCAGTGCCAGACAC+CGG | - | chr4_3:55081844-55081863 | Msa0648620:exon | 60.0% | |
| CCACCACCACCGGGAACCTT+TGG | + | chr4_3:55081641-55081660 | None:intergenic | 65.0% | |
| ! | CCAAAGGTTCCCGGTGGTGG+TGG | - | chr4_3:55081638-55081657 | Msa0648620:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55081614 | 55085394 | 55081614 | ID=Msa0648620;Name=Msa0648620 |
| chr4_3 | mRNA | 55081614 | 55085394 | 55081614 | ID=Msa0648620-mRNA-1;Parent=Msa0648620;Name=Msa0648620-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.8|1|1|1|5|245|297 |
| chr4_3 | exon | 55081614 | 55082053 | 55081614 | ID=Msa0648620-mRNA-1:exon:14006;Parent=Msa0648620-mRNA-1 |
| chr4_3 | exon | 55082502 | 55082714 | 55082502 | ID=Msa0648620-mRNA-1:exon:14005;Parent=Msa0648620-mRNA-1 |
| chr4_3 | exon | 55082906 | 55083076 | 55082906 | ID=Msa0648620-mRNA-1:exon:14004;Parent=Msa0648620-mRNA-1 |
| chr4_3 | exon | 55083981 | 55084097 | 55083981 | ID=Msa0648620-mRNA-1:exon:14003;Parent=Msa0648620-mRNA-1 |
| chr4_3 | exon | 55085197 | 55085394 | 55085197 | ID=Msa0648620-mRNA-1:exon:14002;Parent=Msa0648620-mRNA-1 |
| chr4_3 | CDS | 55085197 | 55085394 | 55085197 | ID=Msa0648620-mRNA-1:cds;Parent=Msa0648620-mRNA-1 |
| chr4_3 | CDS | 55083981 | 55084097 | 55083981 | ID=Msa0648620-mRNA-1:cds;Parent=Msa0648620-mRNA-1 |
| chr4_3 | CDS | 55082906 | 55083076 | 55082906 | ID=Msa0648620-mRNA-1:cds;Parent=Msa0648620-mRNA-1 |
| chr4_3 | CDS | 55082502 | 55082714 | 55082502 | ID=Msa0648620-mRNA-1:cds;Parent=Msa0648620-mRNA-1 |
| chr4_3 | CDS | 55081859 | 55082053 | 55081859 | ID=Msa0648620-mRNA-1:cds;Parent=Msa0648620-mRNA-1 |
| chr4_3 | three_prime_UTR | 55081614 | 55081858 | 55081614 | ID=Msa0648620-mRNA-1:three_prime_utr;Parent=Msa0648620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
