AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410290 MtrunA17_Chr1g0171501 76.355 609 103 9 20 590 1 606 0.0 868
Msa1410290 MtrunA17_Chr7g0256181 53.810 630 225 8 20 590 1 623 0.0 639
Msa1410290 MtrunA17_Chr1g0211201 66.304 184 12 2 283 466 1 134 1.74e-70 223
Msa1410290 MtrunA17_Chr2g0328121 28.541 473 327 5 120 581 39 511 1.27e-61 212
Msa1410290 MtrunA17_Chr1g0211211 91.954 87 7 0 504 590 1 87 4.77e-49 165
Msa1410290 MtrunA17_Chr8g0368151 28.692 474 314 12 111 568 13 478 1.84e-47 173
Msa1410290 MtrunA17_Chr1g0185601 25.870 460 324 8 143 589 56 511 2.50e-39 150
Msa1410290 MtrunA17_Chr2g0282091 24.948 485 319 12 108 564 10 477 4.02e-39 150
Msa1410290 MtrunA17_Chr8g0359961 26.097 433 295 11 120 534 28 453 1.01e-37 146
Msa1410290 MtrunA17_Chr2g0303221 25.175 429 293 12 127 536 33 452 2.26e-33 133
Msa1410290 MtrunA17_Chr4g0021331 24.878 410 282 10 143 534 47 448 1.34e-32 131
Msa1410290 MtrunA17_Chr2g0324251 25.791 411 279 7 143 533 52 456 6.66e-32 129
Msa1410290 MtrunA17_Chr1g0155351 27.124 306 210 8 138 435 69 369 3.30e-26 111
Msa1410290 MtrunA17_Chr1g0194521 27.178 287 201 7 138 419 105 388 2.22e-24 107
Msa1410290 MtrunA17_Chr3g0132571 23.690 439 313 10 142 564 56 488 3.27e-24 106
Msa1410290 MtrunA17_Chr1g0196741 24.719 356 219 6 219 534 280 626 8.09e-22 100
Msa1410290 MtrunA17_Chr1g0210801 23.204 362 266 7 217 571 169 525 1.52e-19 92.4
Msa1410290 MtrunA17_Chr1g0210801 24.436 266 195 4 229 488 281 546 4.75e-15 78.2
Msa1410290 MtrunA17_Chr1g0210801 23.106 264 198 3 286 545 130 392 5.01e-14 75.1
Msa1410290 MtrunA17_Chr3g0089851 20.723 415 286 10 138 545 81 459 3.21e-18 87.8
Msa1410290 MtrunA17_Chr1g0147171 23.077 377 244 6 225 558 145 518 4.53e-18 88.2
Msa1410290 MtrunA17_Chr1g0168811 24.399 291 213 4 283 567 242 531 4.92e-18 87.8
Msa1410290 MtrunA17_Chr1g0168811 21.084 498 335 12 131 582 129 614 1.18e-12 70.9
Msa1410290 MtrunA17_Chr5g0417961 22.626 358 261 7 227 574 274 625 3.09e-17 85.5
Msa1410290 MtrunA17_Chr8g0390501 22.171 433 286 10 161 546 49 477 1.67e-16 82.8
Msa1410290 MtrunA17_Chr4g0033981 22.727 264 168 4 284 545 348 577 1.90e-16 82.8
Msa1410290 MtrunA17_Chr4g0033981 23.308 266 199 4 284 545 208 472 1.09e-13 73.9
Msa1410290 MtrunA17_Chr3g0143851 22.096 353 228 7 278 584 300 651 2.98e-16 82.4
Msa1410290 MtrunA17_Chr3g0143851 20.000 270 210 4 259 523 386 654 1.56e-12 70.5
Msa1410290 MtrunA17_Chr3g0143851 23.047 256 188 5 266 515 149 401 2.54e-12 69.7
Msa1410290 MtrunA17_Chr3g0136851 21.526 367 248 5 221 548 163 528 3.21e-16 82.8
Msa1410290 MtrunA17_Chr3g0136851 22.442 303 202 4 227 528 413 683 8.38e-12 68.6
Msa1410290 MtrunA17_Chr7g0220481 22.630 327 239 6 226 539 180 505 6.15e-16 81.6
Msa1410290 MtrunA17_Chr7g0220481 23.507 268 197 5 247 508 272 537 5.52e-12 68.9
Msa1410290 MtrunA17_Chr6g0481991 20.566 389 266 9 147 493 190 577 6.39e-16 81.3
Msa1410290 MtrunA17_Chr6g0481991 20.284 493 333 12 109 582 110 561 7.68e-15 77.8
Msa1410290 MtrunA17_Chr1g0166071 22.689 357 262 6 227 574 275 626 9.23e-16 80.9
Msa1410290 MtrunA17_Chr1g0166071 26.141 241 167 5 284 522 168 399 4.57e-14 75.5
Msa1410290 MtrunA17_Chr3g0099661 22.467 454 300 11 153 561 167 613 1.15e-15 80.9
Msa1410290 MtrunA17_Chr4g0059671 20.891 359 263 8 225 569 209 560 1.39e-15 80.5
Msa1410290 MtrunA17_Chr4g0059671 20.536 336 226 5 227 522 282 616 8.86e-12 68.2
Msa1410290 MtrunA17_Chr4g0037841 23.590 390 237 14 230 567 137 517 2.75e-15 79.0
Msa1410290 MtrunA17_Chr7g0220501 24.000 300 208 6 235 529 239 523 2.93e-15 79.3
Msa1410290 MtrunA17_Chr2g0297991 23.218 435 290 11 139 544 143 562 4.68e-15 79.0
Msa1410290 MtrunA17_Chr2g0297991 21.348 445 279 13 161 566 349 761 3.64e-13 72.8
Msa1410290 MtrunA17_Chr2g0297991 25.373 268 177 8 161 414 559 817 3.75e-12 69.3
Msa1410290 MtrunA17_Chr8g0392911 24.291 247 181 5 280 522 427 671 4.95e-15 78.6
Msa1410290 MtrunA17_Chr8g0392911 21.198 434 316 9 123 545 137 555 2.43e-14 76.3
Msa1410290 MtrunA17_Chr2g0297211 23.864 352 242 8 247 583 693 1033 6.37e-15 78.6
Msa1410290 MtrunA17_Chr4g0060341 23.590 390 237 14 230 567 137 517 7.66e-15 77.8
Msa1410290 MtrunA17_Chr3g0133151 21.429 350 250 10 162 493 63 405 1.47e-14 76.6
Msa1410290 MtrunA17_Chr7g0256621 19.730 370 275 7 174 522 85 453 2.20e-14 75.9
Msa1410290 MtrunA17_Chr3g0121341 22.761 268 198 4 285 546 258 522 3.25e-14 75.9
Msa1410290 MtrunA17_Chr7g0265721 18.966 406 281 8 214 574 66 468 3.37e-14 75.9
Msa1410290 MtrunA17_Chr7g0265721 20.909 330 248 7 254 574 317 642 9.59e-12 68.2
Msa1410290 MtrunA17_Chr5g0434021 20.334 359 248 6 227 548 296 653 4.94e-14 75.5
Msa1410290 MtrunA17_Chr5g0434021 21.429 392 240 11 227 563 331 709 6.91e-12 68.6
Msa1410290 MtrunA17_Chr5g0396041 23.019 265 197 4 233 492 312 574 5.40e-14 75.5
Msa1410290 MtrunA17_Chr5g0396041 20.567 282 212 7 263 533 268 548 1.40e-13 74.3
Msa1410290 MtrunA17_Chr7g0257371 20.968 434 295 10 139 528 101 530 5.50e-14 75.5
Msa1410290 MtrunA17_Chr7g0257371 22.097 267 201 3 284 544 211 476 3.03e-13 72.8
Msa1410290 MtrunA17_Chr3g0143411 24.167 240 178 3 287 523 137 375 6.34e-14 74.7
Msa1410290 MtrunA17_Chr3g0091741 20.275 291 215 7 291 567 121 408 6.42e-14 74.7
Msa1410290 MtrunA17_Chr8g0359551 25.087 287 199 7 247 523 165 445 6.56e-14 74.7
Msa1410290 MtrunA17_Chr6g0482601 19.655 290 226 4 284 567 141 429 6.83e-14 74.3
Msa1410290 MtrunA17_Chr6g0482611 20.930 258 165 4 275 493 295 552 7.43e-14 74.3
Msa1410290 MtrunA17_Chr6g0482611 18.930 243 192 3 289 527 204 445 3.68e-11 65.9
Msa1410290 MtrunA17_Chr8g0387281 22.917 240 176 4 290 523 312 548 8.27e-14 74.7
Msa1410290 MtrunA17_Chr6g0482821 19.655 290 226 4 284 567 232 520 9.13e-14 74.3
Msa1410290 MtrunA17_Chr1g0159521 19.706 340 220 7 289 582 201 533 1.22e-13 73.9
Msa1410290 MtrunA17_Chr6g0478261 19.575 424 317 9 109 514 78 495 1.25e-13 73.6
Msa1410290 MtrunA17_Chr6g0482571 21.107 289 213 6 289 567 91 374 1.30e-13 73.2
Msa1410290 MtrunA17_Chr8g0368891 21.786 280 211 5 268 542 356 632 3.53e-13 72.4
Msa1410290 MtrunA17_Chr2g0290441 21.170 359 271 6 201 549 88 444 4.55e-13 72.4
Msa1410290 MtrunA17_Chr6g0473331 23.611 216 157 3 284 493 366 579 5.19e-13 72.0
Msa1410290 MtrunA17_Chr4g0076151 21.111 270 209 2 284 549 207 476 6.42e-13 71.6
Msa1410290 MtrunA17_Chr1g0182521 19.822 338 265 4 224 556 272 608 7.04e-13 71.6
Msa1410290 MtrunA17_Chr4g0047591 23.642 313 214 6 212 515 251 547 7.48e-13 72.0
Msa1410290 MtrunA17_Chr3g0118171 20.301 399 302 6 98 489 15 404 8.48e-13 70.9
Msa1410290 MtrunA17_Chr7g0231941 20.375 373 254 9 161 523 88 427 9.29e-13 71.2
Msa1410290 MtrunA17_Chr6g0481621 20.147 273 206 4 279 540 246 517 1.04e-12 70.9
Msa1410290 MtrunA17_Chr6g0481621 18.077 260 208 3 289 544 221 479 2.95e-11 66.2
Msa1410290 MtrunA17_Chr6g0481621 21.311 305 200 5 227 491 263 567 4.26e-11 65.9
Msa1410290 MtrunA17_Chr2g0304071 19.465 411 299 10 165 545 74 482 1.28e-12 70.9
Msa1410290 MtrunA17_Chr2g0290431 21.429 336 222 6 220 549 20 319 1.44e-12 70.1
Msa1410290 MtrunA17_Chr6g0482561 19.649 285 222 4 289 567 73 356 1.46e-12 69.7
Msa1410290 MtrunA17_Chr1g0190191 22.648 287 213 6 290 569 119 403 1.49e-12 70.5
Msa1410290 MtrunA17_Chr5g0446031 18.451 439 306 7 152 545 96 527 1.90e-12 70.5
Msa1410290 MtrunA17_Chr5g0446031 18.937 301 204 4 300 560 559 859 2.78e-11 66.6
Msa1410290 MtrunA17_Chr2g0277851 22.000 200 151 3 318 513 234 432 2.30e-12 69.7
Msa1410290 MtrunA17_Chr6g0477361 20.578 277 206 4 227 489 37 313 2.64e-12 68.2
Msa1410290 MtrunA17_Chr6g0473261 20.721 222 172 2 276 493 368 589 2.88e-12 69.7
Msa1410290 MtrunA17_Chr6g0473261 23.045 243 147 5 288 526 310 516 1.26e-11 67.4
Msa1410290 MtrunA17_Chr6g0473351 22.727 220 169 1 288 506 262 481 3.44e-12 69.3
Msa1410290 MtrunA17_Chr6g0473351 20.149 268 179 3 227 493 305 538 4.55e-11 65.5
Msa1410290 MtrunA17_Chr6g0458411 19.938 321 251 4 225 540 200 519 3.50e-12 69.3
Msa1410290 MtrunA17_Chr8g0382891 20.345 290 193 5 283 568 182 437 4.01e-12 68.9
Msa1410290 MtrunA17_Chr7g0241871 21.429 322 243 5 225 538 235 554 4.05e-12 69.3
Msa1410290 MtrunA17_Chr3g0102961 22.989 261 160 5 287 539 273 500 4.11e-12 68.9
Msa1410290 MtrunA17_Chr7g0246931 21.090 422 303 11 141 544 126 535 4.23e-12 68.9
Msa1410290 MtrunA17_Chr1g0170071 19.681 376 284 8 180 541 253 624 5.42e-12 68.9
Msa1410290 MtrunA17_Chr1g0211881 21.964 387 259 9 138 517 87 437 5.44e-12 68.6
Msa1410290 MtrunA17_Chr6g0473241 20.796 226 173 3 272 493 318 541 5.49e-12 68.6
Msa1410290 MtrunA17_Chr4g0048611 21.017 295 218 6 284 567 142 432 5.59e-12 68.9
Msa1410290 MtrunA17_Chr2g0332881 22.143 420 256 13 217 583 237 638 5.78e-12 68.9
Msa1410290 MtrunA17_Chr8g0377751 22.059 204 155 2 284 483 793 996 5.88e-12 68.9
Msa1410290 MtrunA17_Chr6g0473501 21.681 226 171 3 272 493 213 436 7.84e-12 67.8
Msa1410290 MtrunA17_Chr4g0038401 19.865 297 216 7 284 567 524 811 7.96e-12 68.6
Msa1410290 MtrunA17_Chr7g0217931 22.476 307 227 5 271 571 123 424 9.18e-12 67.8
Msa1410290 MtrunA17_Chr6g0473491 21.304 230 176 3 269 493 312 541 9.35e-12 67.8
Msa1410290 MtrunA17_Chr6g0473341 20.796 226 173 3 272 493 318 541 9.52e-12 67.8
Msa1410290 MtrunA17_Chr4g0054821 21.162 241 157 2 284 523 251 459 9.65e-12 68.2
Msa1410290 MtrunA17_Chr6g0479541 21.196 368 272 7 185 540 254 615 9.72e-12 67.8
Msa1410290 MtrunA17_Chr8g0335951 22.546 377 265 10 136 501 90 450 9.96e-12 67.4
Msa1410290 MtrunA17_Chr6g0473471 21.681 226 171 3 272 493 213 436 1.01e-11 67.4
Msa1410290 MtrunA17_Chr6g0478691 22.848 302 227 4 227 523 246 546 1.02e-11 67.8
Msa1410290 MtrunA17_Chr2g0285331 22.267 247 172 5 280 514 254 492 1.09e-11 67.8
Msa1410290 MtrunA17_Chr2g0290451 22.034 295 219 4 263 549 151 442 1.25e-11 67.8
Msa1410290 MtrunA17_Chr6g0473431 20.290 345 256 4 194 519 168 512 1.26e-11 67.4
Msa1410290 MtrunA17_Chr6g0473481 20.270 222 173 2 276 493 320 541 1.40e-11 67.4
Msa1410290 MtrunA17_Chr6g0473481 22.500 240 152 4 288 526 262 468 2.57e-11 66.2
Msa1410290 MtrunA17_Chr6g0473511 20.270 222 173 2 276 493 320 541 1.40e-11 67.4
Msa1410290 MtrunA17_Chr6g0473511 22.500 240 152 4 288 526 262 468 2.57e-11 66.2
Msa1410290 MtrunA17_Chr6g0471201 21.534 339 234 10 216 537 204 527 1.61e-11 67.0
Msa1410290 MtrunA17_Chr6g0481971 18.816 473 329 9 112 567 76 510 1.76e-11 67.0
Msa1410290 MtrunA17_Chr5g0419551 22.396 384 255 8 148 523 170 518 1.79e-11 67.0
Msa1410290 MtrunA17_Chr5g0419551 24.060 266 194 6 225 483 355 619 1.97e-11 67.0
Msa1410290 MtrunA17_Chr7g0236501 20.863 278 180 5 283 520 211 488 2.77e-11 66.2
Msa1410290 MtrunA17_Chr6g0473461 20.976 205 158 2 289 489 3 207 2.93e-11 63.2
Msa1410290 MtrunA17_Chr8g0365781 22.591 301 217 7 248 538 653 947 3.83e-11 66.2
Msa1410290 MtrunA17_Chr1g0162281 22.267 247 187 3 284 526 325 570 3.97e-11 66.2
Msa1410290 MtrunA17_Chr6g0473151 20.000 220 172 2 278 493 252 471 5.03e-11 65.5
Msa1410290 MtrunA17_Chr6g0482651 20.000 285 221 4 289 567 225 508 5.27e-11 65.5
Msa1410290 MtrunA17_Chr3g0116201 23.077 247 185 3 284 526 173 418 5.61e-11 65.1
Msa1410290 MtrunA17_Chr8g0391651 20.098 408 309 9 173 568 295 697 5.85e-11 65.5
Msa1410290 MtrunA17_Chr6g0482551 20.000 225 170 5 309 528 219 438 6.00e-11 65.1
Msa1410290 MtrunA17_Chr6g0478551 19.630 270 212 3 284 549 258 526 6.89e-11 65.1
Msa1410290 MtrunA17_Chr6g0472611 21.171 222 171 2 276 493 326 547 6.96e-11 65.1
Msa1410290 MtrunA17_Chr8g0349431 29.915 117 81 1 136 251 6 122 6.96e-11 60.1
Msa1410290 MtrunA17_Chr6g0473441 20.270 222 173 2 276 493 320 541 7.24e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410290 AT1G80270.1 50.586 597 268 5 20 590 1 596 0.0 592
Msa1410290 AT1G80270.3 50.586 597 268 5 20 590 1 596 0.0 592
Msa1410290 AT1G80270.2 50.586 597 268 5 20 590 1 596 0.0 592
Msa1410290 AT1G80270.5 50.586 597 268 5 20 590 1 596 0.0 592
Msa1410290 AT1G80270.4 50.586 597 268 5 20 590 1 596 0.0 592
Msa1410290 AT1G15480.1 50.336 596 269 6 20 590 1 594 0.0 569
Msa1410290 AT3G15590.1 48.515 505 251 4 93 590 107 609 9.63e-160 470
Msa1410290 AT3G15590.2 48.515 505 251 4 93 590 107 609 9.63e-160 470
Msa1410290 AT1G07590.1 27.912 455 318 4 137 581 79 533 4.24e-51 184
Msa1410290 AT1G60770.1 27.646 463 311 11 123 569 25 479 3.33e-45 167
Msa1410290 AT4G02820.1 26.974 456 321 5 142 589 80 531 1.65e-41 157
Msa1410290 AT4G21705.1 25.571 438 303 9 124 544 24 455 1.01e-40 155
Msa1410290 AT2G20710.1 27.696 408 279 7 138 533 53 456 3.92e-39 150
Msa1410290 AT1G02150.1 24.079 407 299 7 136 532 80 486 1.05e-34 138
Msa1410290 AT5G27460.1 26.126 444 306 9 138 564 53 491 1.34e-32 131
Msa1410290 AT2G20710.2 28.212 358 241 7 188 533 8 361 9.56e-31 124
Msa1410290 AT4G01990.1 28.349 321 215 11 139 449 56 371 5.16e-28 118
Msa1410290 AT1G02370.1 26.331 338 239 8 124 452 70 406 1.44e-27 117
Msa1410290 AT3G23020.1 23.472 409 259 7 172 530 236 640 8.29e-25 110
Msa1410290 AT5G09450.1 22.115 312 230 7 122 426 56 361 4.34e-21 96.3
Msa1410290 AT1G28020.1 26.804 291 196 7 142 420 55 340 6.00e-21 96.7
Msa1410290 AT5G02860.1 22.103 466 300 9 139 549 116 573 1.77e-20 96.3
Msa1410290 AT5G02860.1 23.529 306 224 6 227 523 282 586 4.48e-19 92.0
Msa1410290 AT5G02860.4 22.103 466 300 9 139 549 116 573 1.77e-20 96.3
Msa1410290 AT5G02860.4 23.529 306 224 6 227 523 282 586 4.48e-19 92.0
Msa1410290 AT5G02860.2 22.103 466 300 9 139 549 116 573 1.77e-20 96.3
Msa1410290 AT5G02860.2 23.529 306 224 6 227 523 282 586 4.48e-19 92.0
Msa1410290 AT5G02860.5 22.103 466 300 9 139 549 116 573 1.77e-20 96.3
Msa1410290 AT5G02860.5 23.529 306 224 6 227 523 282 586 4.48e-19 92.0
Msa1410290 AT5G02860.3 22.103 466 300 9 139 549 116 573 1.77e-20 96.3
Msa1410290 AT5G02860.3 23.529 306 224 6 227 523 282 586 4.48e-19 92.0
Msa1410290 AT2G35130.3 24.014 279 201 4 279 550 247 521 1.53e-19 92.8
Msa1410290 AT2G35130.3 23.759 282 209 4 213 488 284 565 5.69e-15 78.6
Msa1410290 AT2G35130.3 23.183 289 185 5 283 567 145 400 1.95e-12 70.5
Msa1410290 AT2G35130.1 24.014 279 201 4 279 550 250 524 1.66e-19 92.8
Msa1410290 AT2G35130.1 23.759 282 209 4 213 488 287 568 6.13e-15 78.6
Msa1410290 AT2G35130.1 21.377 276 206 5 283 549 145 418 8.76e-12 68.6
Msa1410290 AT2G35130.2 24.014 279 201 4 279 550 272 546 1.77e-19 92.8
Msa1410290 AT2G35130.2 23.759 282 209 4 213 488 309 590 7.93e-15 78.2
Msa1410290 AT2G35130.2 21.377 276 206 5 283 549 167 440 7.58e-12 68.6
Msa1410290 AT1G74850.1 22.302 417 300 8 147 550 67 472 2.05e-19 93.2
Msa1410290 AT1G74850.1 20.679 324 251 4 227 545 285 607 3.04e-13 73.6
Msa1410290 AT2G31400.2 22.515 342 254 8 254 587 263 601 8.36e-17 84.7
Msa1410290 AT4G39620.2 22.491 289 188 4 283 568 198 453 8.50e-17 84.0
Msa1410290 AT2G31400.1 22.515 342 254 8 254 587 263 601 9.07e-17 84.7
Msa1410290 AT5G39980.1 22.169 415 288 12 149 544 116 514 9.25e-17 84.3
Msa1410290 AT3G04760.1 22.404 366 259 9 169 515 94 453 1.04e-16 84.0
Msa1410290 AT4G39620.1 22.491 289 188 4 283 568 198 453 1.13e-16 84.0
Msa1410290 AT4G16390.1 21.096 365 282 4 191 549 106 470 1.17e-16 84.0
Msa1410290 AT5G21222.1 21.918 365 243 4 225 547 390 754 8.60e-16 81.6
Msa1410290 AT5G21222.1 20.875 297 226 5 286 574 382 677 9.42e-13 72.0
Msa1410290 AT5G21222.1 19.540 261 196 3 301 547 318 578 1.03e-11 68.6
Msa1410290 AT5G21222.2 21.918 365 243 4 225 547 390 754 8.60e-16 81.6
Msa1410290 AT5G21222.2 20.875 297 226 5 286 574 382 677 9.42e-13 72.0
Msa1410290 AT5G21222.2 19.540 261 196 3 301 547 318 578 1.03e-11 68.6
Msa1410290 AT5G21222.4 21.918 365 243 4 225 547 390 754 8.60e-16 81.6
Msa1410290 AT5G21222.4 20.875 297 226 5 286 574 382 677 9.42e-13 72.0
Msa1410290 AT5G21222.4 19.540 261 196 3 301 547 318 578 1.03e-11 68.6
Msa1410290 AT5G21222.3 21.918 365 243 4 225 547 390 754 8.60e-16 81.6
Msa1410290 AT5G21222.3 20.875 297 226 5 286 574 382 677 9.42e-13 72.0
Msa1410290 AT5G21222.3 19.540 261 196 3 301 547 318 578 1.03e-11 68.6
Msa1410290 AT5G42310.1 22.414 290 214 5 286 567 332 618 9.88e-16 81.3
Msa1410290 AT5G42310.1 23.181 371 270 7 229 585 306 675 3.23e-15 79.7
Msa1410290 AT5G25630.3 23.823 361 220 7 239 550 79 433 1.26e-15 80.5
Msa1410290 AT5G25630.1 23.955 359 222 7 239 550 130 484 1.32e-15 80.5
Msa1410290 AT1G20300.1 24.255 235 174 3 292 523 150 383 1.35e-15 80.5
Msa1410290 AT3G22470.1 20.915 306 236 4 248 548 199 503 2.05e-15 80.1
Msa1410290 AT2G41720.1 20.144 417 291 10 139 549 94 474 3.09e-15 79.7
Msa1410290 AT2G41720.3 20.144 417 291 10 139 549 94 474 3.47e-15 79.7
Msa1410290 AT1G02060.1 21.011 376 255 7 161 526 71 414 5.03e-15 79.0
Msa1410290 AT2G06000.1 24.118 340 210 10 286 587 96 425 5.12e-15 78.6
Msa1410290 AT2G06000.1 20.623 257 198 4 275 526 223 478 2.24e-12 70.1
Msa1410290 AT2G06000.2 24.118 340 210 10 286 587 96 425 5.12e-15 78.6
Msa1410290 AT2G06000.2 20.623 257 198 4 275 526 223 478 2.24e-12 70.1
Msa1410290 AT3G59040.1 20.712 309 239 4 224 527 139 446 5.99e-15 78.6
Msa1410290 AT5G01110.1 23.529 289 215 4 240 523 181 468 6.90e-15 78.6
Msa1410290 AT5G01110.2 23.529 289 215 4 240 523 209 496 8.51e-15 78.2
Msa1410290 AT3G59040.2 20.712 309 239 4 224 527 146 453 8.84e-15 77.8
Msa1410290 AT1G19520.1 25.692 253 179 4 267 511 390 641 9.56e-15 78.2
Msa1410290 AT2G39230.1 20.613 359 257 8 198 545 294 635 1.25e-14 77.8
Msa1410290 AT2G15630.1 21.587 315 244 3 211 523 142 455 1.42e-14 77.4
Msa1410290 AT1G73710.1 21.143 350 231 7 227 532 308 656 1.45e-14 77.8
Msa1410290 AT1G73710.1 20.312 256 200 2 263 514 554 809 2.39e-12 70.5
Msa1410290 AT4G19440.4 26.336 262 185 4 267 521 559 819 2.08e-14 77.0
Msa1410290 AT4G19440.2 26.336 262 185 4 267 521 559 819 2.08e-14 77.0
Msa1410290 AT4G19440.3 26.336 262 185 4 267 521 559 819 2.08e-14 77.0
Msa1410290 AT4G19440.1 26.336 262 185 4 267 521 559 819 2.08e-14 77.0
Msa1410290 AT1G12700.3 20.974 267 204 4 268 529 219 483 2.12e-14 76.6
Msa1410290 AT1G12700.2 20.974 267 204 4 268 529 219 483 2.12e-14 76.6
Msa1410290 AT5G65560.1 21.898 411 286 10 174 568 106 497 2.26e-14 77.0
Msa1410290 AT5G65560.1 22.677 269 203 3 263 527 432 699 8.02e-12 68.9
Msa1410290 AT5G65560.1 21.192 302 233 4 222 519 286 586 6.62e-11 65.9
Msa1410290 AT5G65560.2 21.898 411 286 10 174 568 106 497 2.26e-14 77.0
Msa1410290 AT5G65560.2 22.677 269 203 3 263 527 432 699 8.02e-12 68.9
Msa1410290 AT5G65560.2 21.192 302 233 4 222 519 286 586 6.62e-11 65.9
Msa1410290 AT5G65560.3 21.898 411 286 10 174 568 106 497 2.26e-14 77.0
Msa1410290 AT5G65560.3 22.677 269 203 3 263 527 432 699 8.02e-12 68.9
Msa1410290 AT5G65560.3 21.192 302 233 4 222 519 286 586 6.62e-11 65.9
Msa1410290 AT1G12700.1 20.974 267 204 4 268 529 203 467 2.36e-14 76.6
Msa1410290 AT1G62670.2 22.517 302 217 5 284 574 282 577 2.74e-14 76.6
Msa1410290 AT1G62670.1 22.517 302 217 5 284 574 282 577 2.74e-14 76.6
Msa1410290 AT2G41720.2 22.059 272 205 3 284 549 72 342 4.56e-14 75.9
Msa1410290 AT2G41720.2 21.465 396 233 9 227 545 84 478 3.21e-11 66.6
Msa1410290 AT1G13630.3 22.867 293 218 5 284 569 192 483 4.86e-14 75.9
Msa1410290 AT3G53170.4 21.831 284 199 8 283 555 155 426 5.42e-14 75.1
Msa1410290 AT3G53170.4 22.747 233 146 4 229 459 241 441 2.68e-11 66.6
Msa1410290 AT1G13630.6 22.867 293 218 5 284 569 155 446 5.49e-14 75.5
Msa1410290 AT1G13630.4 22.526 293 219 5 284 569 330 621 6.23e-14 75.5
Msa1410290 AT1G13630.1 22.526 293 219 5 284 569 283 574 6.50e-14 75.5
Msa1410290 AT1G13630.2 22.526 293 219 5 284 569 325 616 7.32e-14 75.5
Msa1410290 AT1G13630.5 22.526 293 219 5 284 569 317 608 7.40e-14 75.5
Msa1410290 AT5G61990.1 19.444 432 327 11 129 545 425 850 7.80e-14 75.5
Msa1410290 AT5G04810.2 21.795 312 196 6 273 541 324 630 7.89e-14 75.1
Msa1410290 AT5G04810.2 19.207 328 259 4 226 548 451 777 1.55e-11 67.8
Msa1410290 AT3G53170.2 21.831 284 199 8 283 555 205 476 8.44e-14 74.7
Msa1410290 AT3G53170.1 21.831 284 199 8 283 555 205 476 8.44e-14 74.7
Msa1410290 AT1G74750.2 20.937 363 262 8 158 507 296 646 8.64e-14 75.1
Msa1410290 AT1G74750.1 20.937 363 262 8 158 507 296 646 8.64e-14 75.1
Msa1410290 AT1G74750.4 20.937 363 262 8 158 507 296 646 8.64e-14 75.1
Msa1410290 AT1G74750.3 20.937 363 262 8 158 507 296 646 8.64e-14 75.1
Msa1410290 AT4G01030.1 24.437 311 207 8 230 528 95 389 9.83e-14 75.1
Msa1410290 AT5G04810.1 21.795 312 196 6 273 541 324 630 1.11e-13 74.7
Msa1410290 AT5G04810.1 19.638 387 268 6 226 570 451 836 3.30e-13 73.6
Msa1410290 AT5G04810.1 26.106 226 161 4 161 383 630 852 3.97e-11 66.6
Msa1410290 AT2G18940.1 21.411 411 297 8 152 544 133 535 1.13e-13 74.7
Msa1410290 AT2G18940.1 22.105 285 171 6 296 569 213 457 1.35e-13 74.7
Msa1410290 AT1G62910.1 22.222 297 214 6 284 569 284 574 1.20e-13 74.3
Msa1410290 AT1G18900.4 21.329 286 219 4 227 507 367 651 1.39e-13 74.3
Msa1410290 AT1G18900.2 21.329 286 219 4 227 507 367 651 1.39e-13 74.3
Msa1410290 AT1G18900.1 21.329 286 219 4 227 507 367 651 1.39e-13 74.3
Msa1410290 AT1G18900.3 21.329 286 219 4 227 507 367 651 1.52e-13 74.3
Msa1410290 AT1G43010.1 25.118 211 150 4 138 346 51 255 1.84e-13 71.2
Msa1410290 AT2G17140.1 20.748 294 214 4 280 567 348 628 1.85e-13 73.9
Msa1410290 AT2G17140.2 20.748 294 214 4 280 567 348 628 1.85e-13 73.9
Msa1410290 AT5G50280.1 22.102 371 265 10 214 567 261 624 1.91e-13 73.9
Msa1410290 AT3G16710.1 21.374 262 165 5 270 528 273 496 1.99e-13 73.6
Msa1410290 AT5G12100.1 21.951 369 246 10 213 574 167 500 2.07e-13 73.9
Msa1410290 AT1G09900.1 22.179 257 195 3 275 527 221 476 2.58e-13 73.2
Msa1410290 AT4G31850.1 23.387 372 260 10 194 550 331 692 3.72e-13 73.2
Msa1410290 AT4G31850.1 21.448 359 241 6 227 545 156 513 2.56e-12 70.5
Msa1410290 AT1G30290.2 21.348 267 205 2 280 541 229 495 3.85e-13 73.2
Msa1410290 AT1G06710.7 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.7 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.1 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.1 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.9 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.9 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.4 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.4 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.13 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.13 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.3 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.3 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.8 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.8 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.2 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.2 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.19 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.19 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.5 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.5 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.6 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.6 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G06710.12 23.313 326 218 7 227 523 340 662 4.83e-13 72.8
Msa1410290 AT1G06710.12 18.768 341 255 5 247 566 541 880 4.40e-11 66.6
Msa1410290 AT1G30290.1 21.348 267 205 2 280 541 229 495 4.93e-13 72.8
Msa1410290 AT1G06710.15 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.15 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G06710.18 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.18 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G06710.17 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.17 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G06710.14 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.14 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G06710.16 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.16 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G06710.10 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.10 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G06710.11 23.385 325 217 7 227 522 340 661 5.06e-13 72.8
Msa1410290 AT1G06710.11 18.768 341 255 5 247 566 541 880 5.30e-11 66.2
Msa1410290 AT1G31840.1 19.257 296 227 5 280 564 518 812 6.59e-13 72.4
Msa1410290 AT1G62930.1 22.559 297 213 5 284 569 281 571 8.14e-13 71.6
Msa1410290 AT1G62930.1 22.177 248 186 5 284 526 211 456 2.46e-12 70.1
Msa1410290 AT1G63080.2 22.436 312 223 6 269 569 253 556 9.50e-13 71.6
Msa1410290 AT1G63080.1 22.436 312 223 6 269 569 253 556 9.50e-13 71.6
Msa1410290 AT1G63080.3 22.436 312 223 6 269 569 253 556 9.50e-13 71.6
Msa1410290 AT5G46680.1 23.297 279 174 5 278 516 32 310 1.02e-12 70.9
Msa1410290 AT3G06920.2 19.518 415 311 10 160 559 81 487 1.11e-12 71.6
Msa1410290 AT3G06920.3 19.518 415 311 10 160 559 81 487 1.11e-12 71.6
Msa1410290 AT1G12620.1 18.263 334 256 5 247 564 200 532 1.17e-12 71.2
Msa1410290 AT3G06920.1 19.518 415 311 10 160 559 67 473 1.28e-12 71.2
Msa1410290 AT5G48730.1 22.932 266 195 5 230 488 159 421 1.68e-12 70.5
Msa1410290 AT2G32630.1 21.021 333 249 7 245 567 210 538 1.77e-12 70.9
Msa1410290 AT1G12300.1 18.862 334 254 5 247 564 216 548 1.86e-12 70.5
Msa1410290 AT5G16640.1 21.094 384 257 8 230 569 121 502 2.07e-12 70.1
Msa1410290 AT3G06430.1 23.028 317 194 8 245 550 109 386 2.34e-12 70.1
Msa1410290 AT1G51965.1 22.010 418 273 13 161 567 209 584 2.44e-12 70.5
Msa1410290 AT1G28000.1 25.339 221 129 4 139 357 49 235 2.82e-12 69.3
Msa1410290 AT5G25630.2 21.714 350 233 8 239 551 130 475 3.26e-12 69.7
Msa1410290 AT3G60050.2 21.791 335 232 9 211 531 142 460 4.64e-12 68.9
Msa1410290 AT3G60050.1 21.791 335 232 9 211 531 142 460 4.64e-12 68.9
Msa1410290 AT3G11380.1 27.155 232 146 6 102 315 315 541 6.23e-12 68.9
Msa1410290 AT1G63130.1 20.000 250 195 3 284 529 247 495 6.45e-12 68.9
Msa1410290 AT1G63130.2 20.000 250 195 3 284 529 247 495 6.45e-12 68.9
Msa1410290 AT1G63400.1 21.549 297 216 5 284 569 286 576 7.21e-12 68.6
Msa1410290 AT1G09820.1 18.770 309 241 6 245 545 174 480 7.45e-12 68.6
Msa1410290 AT1G63070.1 21.812 298 215 5 284 569 241 532 7.81e-12 68.6
Msa1410290 AT1G13040.2 20.579 311 234 5 244 545 64 370 1.30e-11 67.8
Msa1410290 AT1G13040.1 20.579 311 234 5 244 545 64 370 1.30e-11 67.8
Msa1410290 AT5G55840.2 21.613 310 235 6 224 527 338 645 1.36e-11 68.2
Msa1410290 AT5G55840.1 21.613 310 235 6 224 527 338 645 1.36e-11 68.2
Msa1410290 AT5G64320.1 24.609 256 182 6 279 527 410 661 1.47e-11 67.8
Msa1410290 AT5G55840.3 21.290 310 236 6 224 527 298 605 1.83e-11 67.8
Msa1410290 AT4G30825.1 20.000 350 271 6 174 516 157 504 2.01e-11 67.8
Msa1410290 AT3G04760.2 22.102 371 224 13 169 515 94 423 2.05e-11 67.4
Msa1410290 AT1G62590.2 20.968 248 189 5 284 526 216 461 2.32e-11 67.0
Msa1410290 AT1G62590.1 20.968 248 189 5 284 526 216 461 2.32e-11 67.0
Msa1410290 AT3G18110.1 18.945 417 318 9 147 549 601 1011 3.38e-11 67.0
Msa1410290 AT1G03560.1 22.801 307 223 7 248 545 176 477 4.22e-11 66.2
Msa1410290 AT1G74900.1 19.424 278 218 4 295 567 93 369 5.14e-11 65.5
Msa1410290 AT1G63330.3 21.371 248 188 5 284 526 141 386 5.57e-11 65.9
Msa1410290 AT1G63330.1 21.371 248 188 5 284 526 141 386 5.57e-11 65.9
Msa1410290 AT1G63330.2 21.371 248 188 5 284 526 141 386 5.57e-11 65.9
Msa1410290 AT3G16890.1 20.417 240 182 3 275 508 162 398 9.12e-11 65.5
Msa1410290 AT3G53170.3 20.870 345 205 12 222 555 162 449 9.15e-11 64.7
Msa1410290 AT5G40400.1 24.157 356 212 9 135 483 91 395 9.44e-11 65.1

Find 134 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTCCTCTAAAAGAATT+TGG 0.158452 tig0023648:+45437 None:intergenic
TTGAGATGATGTCAATTAAA+TGG 0.218763 tig0023648:-44836 Msa1410290:CDS
CTGATGAAGTGGAGAGAATT+TGG 0.254386 tig0023648:-44953 Msa1410290:CDS
CTCAACAACTGGGTGGAAAA+AGG 0.254425 tig0023648:-46715 Msa1410290:CDS
TCAGGAGTACTGAGTAGTTT+TGG 0.262392 tig0023648:+44802 None:intergenic
CACTACTTATATGACTATTA+TGG 0.264532 tig0023648:-44589 Msa1410290:CDS
GTTTCGCCTTTATGCAATAC+TGG 0.268577 tig0023648:-44982 Msa1410290:CDS
CCAAAGCTTTGTTGGGGAAT+AGG 0.275744 tig0023648:+44400 None:intergenic
TAAGGATCTTATTAAGAAAA+TGG 0.276390 tig0023648:-44745 Msa1410290:CDS
AATGTATGGAAGGGCTTTAC+AGG 0.281062 tig0023648:-46635 Msa1410290:intron
CGAAGATGAGCTGGAGTTAT+CGG 0.335416 tig0023648:-46842 Msa1410290:CDS
ACAATAGCATCCCAGGTTAT+TGG 0.340568 tig0023648:+44699 None:intergenic
TTACAATTGCTTTGAATAGT+TGG 0.343596 tig0023648:+46767 None:intergenic
TTCAACAAAATGAGGGAGTT+AGG 0.346945 tig0023648:-45350 Msa1410290:CDS
CCTTGCTGCAATTGAAGCTT+GGG 0.353288 tig0023648:-44895 Msa1410290:CDS
ATTAAGAAAATGGAAGATAG+TGG 0.353631 tig0023648:-44735 Msa1410290:CDS
TTGATTCTACTCTCAACAAC+TGG 0.358487 tig0023648:-46726 Msa1410290:CDS
GAAGATAGTGGGTGCATAAT+AGG 0.367444 tig0023648:-44723 Msa1410290:CDS
TACAATTGCTTTGAATAGTT+GGG 0.368562 tig0023648:+46768 None:intergenic
AATAGTTCCTAACGCTTTGT+TGG 0.376745 tig0023648:-47025 Msa1410290:CDS
TCAAGGTATTGTTCTGCCTT+TGG 0.378886 tig0023648:+45467 None:intergenic
CTGGCCAGCCAAAGCTTTGT+TGG 0.379748 tig0023648:+44392 None:intergenic
ACCTTGCTGCAATTGAAGCT+TGG 0.380170 tig0023648:-44896 Msa1410290:CDS
AGCTGACGTGTTACTTATGA+TGG 0.388204 tig0023648:-45258 Msa1410290:CDS
ACTGGCTAACTGTGCTAGTC+TGG 0.389597 tig0023648:-45399 Msa1410290:CDS
AACGCCAAACTACCGGCATA+TGG 0.391385 tig0023648:-44450 Msa1410290:CDS
GGATTCGCCTCACTCGTCTA+AGG 0.395130 tig0023648:-47161 Msa1410290:intron
AGAAAATCTTCTCTGCGTTA+TGG 0.396626 tig0023648:+44541 None:intergenic
TGGCCAGCCAAAGCTTTGTT+GGG 0.397097 tig0023648:+44393 None:intergenic
GATCCCATATGCCGGTAGTT+TGG 0.401653 tig0023648:+44446 None:intergenic
AACTACCGGCATATGGGATC+AGG 0.402981 tig0023648:-44443 Msa1410290:CDS
CAATCAAGCAAATCAGAAAC+TGG 0.408927 tig0023648:+44339 None:intergenic
CTATCTCCATCCACTACATC+TGG 0.416001 tig0023648:+46889 None:intergenic
ACTGCCCATGTTAGATGGTC+TGG 0.418967 tig0023648:+45113 None:intergenic
TTGCAAGCAAATGCTGTAAC+AGG 0.420496 tig0023648:+45323 None:intergenic
AACTTCTCCGTCCCGTCAAA+TGG 0.425798 tig0023648:+46985 None:intergenic
GCTAGGCATTATGCCTCAGC+CGG 0.427376 tig0023648:-45086 Msa1410290:CDS
CTTCGAAGGCGTAGAATGTA+TGG 0.428188 tig0023648:-46649 Msa1410290:CDS
CCATCTAACATGGGCAGTCT+TGG 0.435114 tig0023648:-45108 Msa1410290:CDS
TAACATATAAAATAGGAGTA+AGG 0.438302 tig0023648:-47271 Msa1410290:intron
CCTATTCCCCAACAAAGCTT+TGG 0.442635 tig0023648:-44400 Msa1410290:CDS
CCAAGACTGCCCATGTTAGA+TGG 0.444557 tig0023648:+45108 None:intergenic
CTTTGGCAGACCACGCAACT+TGG 0.445365 tig0023648:+45484 None:intergenic
TGTGGGCTCTTCGTCGAGCT+TGG 0.446233 tig0023648:-47182 Msa1410290:CDS
CCCTACCCAGTATTGCATAA+AGG 0.450361 tig0023648:+44976 None:intergenic
AGCATGTCTAATGATATTGA+TGG 0.456122 tig0023648:-45179 Msa1410290:CDS
TCTGGAAAATTTGAGGAAAA+CGG 0.461036 tig0023648:-45381 Msa1410290:CDS
AAAACTTGAAAGACAATATG+TGG 0.463385 tig0023648:-45019 Msa1410290:CDS
CAAAGCTTTGGCTGGCCAGT+TGG 0.472143 tig0023648:-44388 Msa1410290:CDS
GTGCTAGTCTGGAAAATTTG+AGG 0.473927 tig0023648:-45388 Msa1410290:CDS
GCATAAAGGCGAAACAAAGT+TGG 0.475784 tig0023648:+44990 None:intergenic
GTTTCTCTTTATGTTCGAGC+AGG 0.481571 tig0023648:-44678 Msa1410290:CDS
CACAAGAACAAGAAGCCCCT+TGG 0.484227 tig0023648:+47055 None:intergenic
TGAGGGTTTAAGCAGTCATT+CGG 0.485414 tig0023648:-47226 Msa1410290:CDS
GCATAATAGGTCCAATAACC+TGG 0.486420 tig0023648:-44710 Msa1410290:CDS
CCTTTATGCAATACTGGGTA+GGG 0.489551 tig0023648:-44976 Msa1410290:CDS
TTCCCCAACAAAGCTTTGGC+TGG 0.490013 tig0023648:-44396 Msa1410290:CDS
TGGGATTGAATGTTTGTAGT+TGG 0.496683 tig0023648:+46787 None:intergenic
TCTTATAAATGAGAAGCAAC+TGG 0.497959 tig0023648:+45300 None:intergenic
GCCTTTATGCAATACTGGGT+AGG 0.499816 tig0023648:-44977 Msa1410290:CDS
CTGCAATTGAAGCTTGGGGA+AGG 0.502559 tig0023648:-44890 Msa1410290:CDS
ACGCCAAACTACCGGCATAT+GGG 0.503470 tig0023648:-44449 Msa1410290:CDS
AAGGATCAACTAGAGCCAAC+TGG 0.503578 tig0023648:+44373 None:intergenic
GCGTATTCCAACAAAGCGTT+AGG 0.503910 tig0023648:+47018 None:intergenic
TTCGTTCTGTGCTCTAGCAC+AGG 0.509261 tig0023648:-44481 Msa1410290:CDS
TCGAGCAGGAGAAGTTGAAA+AGG 0.509366 tig0023648:-44664 Msa1410290:CDS
AGGAAACATTCAACAAAATG+AGG 0.512047 tig0023648:-45358 Msa1410290:CDS
TGAGTCAAAGCCTCGGGTTG+AGG 0.512371 tig0023648:-44922 Msa1410290:CDS
GCTGATTCTCATCCATTTGA+CGG 0.516844 tig0023648:-46997 Msa1410290:CDS
GGCTTGTGAGTCAAAGCCTC+GGG 0.517693 tig0023648:-44928 Msa1410290:CDS
GAAGATGAGCTGGAGTTATC+GGG 0.522179 tig0023648:-46841 Msa1410290:CDS
AATAATTTGTGTAGAAACCA+AGG 0.525298 tig0023648:-47072 Msa1410290:intron
CTGTGAGCAATATCAATATG+TGG 0.526461 tig0023648:-47200 Msa1410290:CDS
CTGATTCTCATCCATTTGAC+GGG 0.527196 tig0023648:-46996 Msa1410290:CDS
AAGAGAAACAATAGCATCCC+AGG 0.527523 tig0023648:+44692 None:intergenic
CGGCATATGGGATCAGGGAG+AGG 0.529325 tig0023648:-44437 Msa1410290:CDS
CATAAAGGCGAAACAAAGTT+GGG 0.532648 tig0023648:+44991 None:intergenic
TGGAACTGTAGGTCTTGGAT+TGG 0.536443 tig0023648:-45571 Msa1410290:intron
TGCTCTTGAACAGTCTTCGA+AGG 0.538541 tig0023648:-46663 Msa1410290:CDS
TCCTCACAAGCTACTGATGC+TGG 0.538942 tig0023648:-46940 Msa1410290:CDS
AGACGACAACGAAGATGAGC+TGG 0.540409 tig0023648:-46851 Msa1410290:CDS
TTTCGCCTTTATGCAATACT+GGG 0.543767 tig0023648:-44981 Msa1410290:CDS
GCTATATTGAAGGAGATTGA+AGG 0.548918 tig0023648:-45044 Msa1410290:CDS
ATTATTATACAGAACACTAC+TGG 0.551447 tig0023648:-45417 Msa1410290:CDS
ACTGGGTAGGGCTGATGAAG+TGG 0.551487 tig0023648:-44964 Msa1410290:CDS
TTCTCATCCATTTGACGGGA+CGG 0.553918 tig0023648:-46992 Msa1410290:CDS
GATTGAAGATCCAGATGTAG+TGG 0.554119 tig0023648:-46899 Msa1410290:CDS
GTTAAGAGAATGAAGGCAGA+AGG 0.556181 tig0023648:-45143 Msa1410290:CDS
CAAGTTGCGTGGTCTGCCAA+AGG 0.559337 tig0023648:-45483 Msa1410290:CDS
TATGGAGCAGTATGCAAAGA+GGG 0.562326 tig0023648:-44571 Msa1410290:CDS
ATAATTTGTGTAGAAACCAA+GGG 0.564586 tig0023648:-47071 Msa1410290:intron
TAACATGGGCAGTCTTGGCT+AGG 0.564587 tig0023648:-45103 Msa1410290:CDS
CTCTCCCTGATCCCATATGC+CGG 0.566853 tig0023648:+44438 None:intergenic
CGTGTTACTTATGATGGGAA+AGG 0.568209 tig0023648:-45252 Msa1410290:CDS
TCAAATTGTTAAGAGAATGA+AGG 0.572470 tig0023648:-45150 Msa1410290:CDS
CTAGGCATTATGCCTCAGCC+GGG 0.572474 tig0023648:-45085 Msa1410290:CDS
AGGCTTGTGAGTCAAAGCCT+CGG 0.574660 tig0023648:-44929 Msa1410290:CDS
TTGAACCAGACCATCTAACA+TGG 0.574663 tig0023648:-45118 Msa1410290:CDS
TTAAGAAAATGGAAGATAGT+GGG 0.575867 tig0023648:-44734 Msa1410290:CDS
TAAGATGCTAGACAAGGGTA+AGG 0.575956 tig0023648:-44763 Msa1410290:CDS
GAAGAAAATTGAAGAAGCAG+AGG 0.582805 tig0023648:-44865 Msa1410290:CDS
GAAGGCGTAGAATGTATGGA+AGG 0.591400 tig0023648:-46645 Msa1410290:CDS
AAGAATTTGGAACATGCTCA+AGG 0.593893 tig0023648:+45450 None:intergenic
GAAGATCCAGATGTAGTGGA+TGG 0.596970 tig0023648:-46895 Msa1410290:CDS
GATTTGATTGCCAAGTTGCG+TGG 0.599545 tig0023648:-45494 Msa1410290:CDS
TACTCCTGAAAATTTATACA+AGG 0.599938 tig0023648:-44788 Msa1410290:CDS
TGAAGTGGAGAGAATTTGGA+AGG 0.601261 tig0023648:-44949 Msa1410290:CDS
TTGATTACCTTAGACGAGTG+AGG 0.605160 tig0023648:+47154 None:intergenic
ACCAGCATCAGTAGCTTGTG+AGG 0.609145 tig0023648:+46939 None:intergenic
GGAAACATTCAACAAAATGA+GGG 0.611621 tig0023648:-45357 Msa1410290:CDS
ACTACCGGCATATGGGATCA+GGG 0.615630 tig0023648:-44442 Msa1410290:CDS
CCCAAGCTTCAATTGCAGCA+AGG 0.616183 tig0023648:+44895 None:intergenic
TGATGCTGGTAGCAAGAACA+AGG 0.618306 tig0023648:-46926 Msa1410290:CDS
GTCATATAAGTAGTGAACAA+TGG 0.618693 tig0023648:+44597 None:intergenic
TGTGAGCAATATCAATATGT+GGG 0.620569 tig0023648:-47199 Msa1410290:CDS
GCTGACGTGTTACTTATGAT+GGG 0.621760 tig0023648:-45257 Msa1410290:CDS
GGCCAGCCAAAGCTTTGTTG+GGG 0.625192 tig0023648:+44394 None:intergenic
CATAATAGGTCCAATAACCT+GGG 0.633389 tig0023648:-44709 Msa1410290:CDS
CTTGCTGCAATTGAAGCTTG+GGG 0.638499 tig0023648:-44894 Msa1410290:CDS
TGATTCTACTCTCAACAACT+GGG 0.641769 tig0023648:-46725 Msa1410290:CDS
AAGGCGTAGAATGTATGGAA+GGG 0.649552 tig0023648:-46644 Msa1410290:CDS
GGAAAGTTGACGTCTGCTCA+CGG 0.649724 tig0023648:+46960 None:intergenic
AAACTTGAAAGACAATATGT+GGG 0.657774 tig0023648:-45018 Msa1410290:CDS
GGAAAATTTGAGGAAAACGG+AGG 0.667007 tig0023648:-45378 Msa1410290:CDS
GCAAGGTAGTCCTCAACCCG+AGG 0.668805 tig0023648:+44912 None:intergenic
TAATTTGTGTAGAAACCAAG+GGG 0.670179 tig0023648:-47070 Msa1410290:intron
GTTGTTGAGAGTAGAATCAA+CGG 0.672383 tig0023648:+46729 None:intergenic
AGGCATAAGATGCTAGACAA+GGG 0.673561 tig0023648:-44768 Msa1410290:CDS
AAGGCATAAGATGCTAGACA+AGG 0.675869 tig0023648:-44769 Msa1410290:CDS
TTCTACTCTCAACAACTGGG+TGG 0.676925 tig0023648:-46722 Msa1410290:CDS
TTATGGAGCAGTATGCAAAG+AGG 0.687746 tig0023648:-44572 Msa1410290:CDS
ATGGAGCAGTATGCAAAGAG+GGG 0.702068 tig0023648:-44570 Msa1410290:CDS
TGAACCAGACCATCTAACAT+GGG 0.719309 tig0023648:-45117 Msa1410290:CDS
TGCTGGTAGCAAGAACAAGG+AGG 0.724439 tig0023648:-46923 Msa1410290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATGACAAAATATTTT+GGG + tig0023648:44401-44420 None:intergenic 10.0%
!!! TAATTTATGACAAAATATTT+TGG + tig0023648:44402-44421 None:intergenic 10.0%
!! CATAAATTAACATATAAAAT+AGG - tig0023648:44413-44432 Msa1410290:CDS 10.0%
!! AATTAAAACATTAAACATTA+TGG + tig0023648:46064-46083 None:intergenic 10.0%
!!! ATTTATGACAAAATATTTTG+GGG + tig0023648:44400-44419 None:intergenic 15.0%
!! ATGCTAAATAATAATAATAC+TGG + tig0023648:44582-44601 None:intergenic 15.0%
!! TTATTCTATTAAAGAATACA+TGG + tig0023648:45139-45158 None:intergenic 15.0%
!! GTATTCTTTAATAGAATAAA+TGG - tig0023648:45140-45159 Msa1410290:CDS 15.0%
!! TAATCAACATGTTAATTTAT+TGG + tig0023648:45527-45546 None:intergenic 15.0%
!!! GTATTGAACTAAGATTTTAA+AGG + tig0023648:44374-44393 None:intergenic 20.0%
!!! TTTATGACAAAATATTTTGG+GGG + tig0023648:44399-44418 None:intergenic 20.0%
!! TAACATATAAAATAGGAGTA+AGG - tig0023648:44420-44439 Msa1410290:CDS 20.0%
!! ATATAATCTATATGCCAAAA+TGG + tig0023648:45902-45921 None:intergenic 20.0%
!!! ATTTATCTTGTTTATGTTTC+TGG - tig0023648:46036-46055 Msa1410290:intron 20.0%
!!! ATTTTATAAGTATAAGGAGA+AGG + tig0023648:46476-46495 None:intergenic 20.0%
!! TAAGGATCTTATTAAGAAAA+TGG - tig0023648:46946-46965 Msa1410290:CDS 20.0%
!! TAAAATAGGAGTAAGGTTTT+TGG - tig0023648:44427-44446 Msa1410290:CDS 25.0%
!! AAAATAGGAGTAAGGTTTTT+GGG - tig0023648:44428-44447 Msa1410290:CDS 25.0%
!! AATAATTTGTGTAGAAACCA+AGG - tig0023648:44619-44638 Msa1410290:CDS 25.0%
!! ATAATTTGTGTAGAAACCAA+GGG - tig0023648:44620-44639 Msa1410290:CDS 25.0%
!! TACAATTGCTTTGAATAGTT+GGG + tig0023648:44926-44945 None:intergenic 25.0%
!! TTACAATTGCTTTGAATAGT+TGG + tig0023648:44927-44946 None:intergenic 25.0%
! CTATTAAAGAATACATGGAA+TGG + tig0023648:45134-45153 None:intergenic 25.0%
! CAAAAGATGAAAAGAAACAA+AGG + tig0023648:45644-45663 None:intergenic 25.0%
!!! GTTTATCGTTTTTCTTTCTT+TGG - tig0023648:46096-46115 Msa1410290:intron 25.0%
!! AATTCTCCTCTAAAAGAATT+TGG + tig0023648:46257-46276 None:intergenic 25.0%
! ATTATTATACAGAACACTAC+TGG - tig0023648:46274-46293 Msa1410290:intron 25.0%
! TCAAATTGTTAAGAGAATGA+AGG - tig0023648:46541-46560 Msa1410290:intron 25.0%
! AAAAACTGAAGCTATATTGA+AGG - tig0023648:46637-46656 Msa1410290:CDS 25.0%
! AAAACTTGAAAGACAATATG+TGG - tig0023648:46672-46691 Msa1410290:CDS 25.0%
! AAACTTGAAAGACAATATGT+GGG - tig0023648:46673-46692 Msa1410290:CDS 25.0%
! TTGAGATGATGTCAATTAAA+TGG - tig0023648:46855-46874 Msa1410290:intron 25.0%
! TACTCCTGAAAATTTATACA+AGG - tig0023648:46903-46922 Msa1410290:CDS 25.0%
!! TATGCCTTGTATAAATTTTC+AGG + tig0023648:46910-46929 None:intergenic 25.0%
! ATTAAGAAAATGGAAGATAG+TGG - tig0023648:46956-46975 Msa1410290:CDS 25.0%
! TTAAGAAAATGGAAGATAGT+GGG - tig0023648:46957-46976 Msa1410290:CDS 25.0%
! CACTACTTATATGACTATTA+TGG - tig0023648:47102-47121 Msa1410290:intron 25.0%
GATTGTCGAGATTTACAATT+TGG + tig0023648:44352-44371 None:intergenic 30.0%
TGTGAGCAATATCAATATGT+GGG - tig0023648:44492-44511 Msa1410290:CDS 30.0%
AATACTGGTAAAGAAGAATG+AGG + tig0023648:44567-44586 None:intergenic 30.0%
! TAATTTGTGTAGAAACCAAG+GGG - tig0023648:44621-44640 Msa1410290:CDS 30.0%
AAAAAGGTAAGGAATTAAGC+AGG - tig0023648:44992-45011 Msa1410290:CDS 30.0%
AATGAGTTAGAATACATCAC+TGG - tig0023648:45237-45256 Msa1410290:CDS 30.0%
ATGATGCTTTGTATAATGCA+GGG + tig0023648:45269-45288 None:intergenic 30.0%
AAAATCACCAGTAAACAAGT+GGG + tig0023648:45428-45447 None:intergenic 30.0%
AAAAATCACCAGTAAACAAG+TGG + tig0023648:45429-45448 None:intergenic 30.0%
TTGGCTGAAAAAAAATACTG+GGG + tig0023648:45457-45476 None:intergenic 30.0%
CTTGGCTGAAAAAAAATACT+GGG + tig0023648:45458-45477 None:intergenic 30.0%
ACTTGGCTGAAAAAAAATAC+TGG + tig0023648:45459-45478 None:intergenic 30.0%
GATTCATACATTCTCATTGT+TGG - tig0023648:45563-45582 Msa1410290:CDS 30.0%
TAAGTTGTATCCATAACCTT+TGG - tig0023648:45762-45781 Msa1410290:intron 30.0%
!! ATCGTTTTTCTTTCTTTGGT+TGG - tig0023648:46100-46119 Msa1410290:intron 30.0%
! CATGTTCCAAATTCTTTTAG+AGG - tig0023648:46248-46267 Msa1410290:intron 30.0%
TCTGGAAAATTTGAGGAAAA+CGG - tig0023648:46310-46329 Msa1410290:intron 30.0%
AGGAAACATTCAACAAAATG+AGG - tig0023648:46333-46352 Msa1410290:intron 30.0%
GGAAACATTCAACAAAATGA+GGG - tig0023648:46334-46353 Msa1410290:intron 30.0%
TCTTATAAATGAGAAGCAAC+TGG + tig0023648:46394-46413 None:intergenic 30.0%
AGCATGTCTAATGATATTGA+TGG - tig0023648:46512-46531 Msa1410290:intron 30.0%
!!! TTCAGTTTTTTCTATAAGCC+CGG + tig0023648:46627-46646 None:intergenic 30.0%
GTCATATAAGTAGTGAACAA+TGG + tig0023648:47097-47116 None:intergenic 30.0%
TTATAAAAACGCCAAACTAC+CGG - tig0023648:47234-47253 Msa1410290:intron 30.0%
CTGTGAGCAATATCAATATG+TGG - tig0023648:44491-44510 Msa1410290:CDS 35.0%
AATAGTTCCTAACGCTTTGT+TGG - tig0023648:44666-44685 Msa1410290:CDS 35.0%
TGGGATTGAATGTTTGTAGT+TGG + tig0023648:44907-44926 None:intergenic 35.0%
GTTGTTGAGAGTAGAATCAA+CGG + tig0023648:44965-44984 None:intergenic 35.0%
TTGATTCTACTCTCAACAAC+TGG - tig0023648:44965-44984 Msa1410290:CDS 35.0%
TGATTCTACTCTCAACAACT+GGG - tig0023648:44966-44985 Msa1410290:CDS 35.0%
ATAGCACAGCTTCATATCAT+AGG - tig0023648:45107-45126 Msa1410290:CDS 35.0%
GATGATGCTTTGTATAATGC+AGG + tig0023648:45270-45289 None:intergenic 35.0%
TTGGTTCCTAAATCCCAATA+CGG - tig0023648:45323-45342 Msa1410290:CDS 35.0%
CAATGGAAAGAAGAATGAAG+TGG + tig0023648:45362-45381 None:intergenic 35.0%
CACTTCATTCTTCTTTCCAT+TGG - tig0023648:45360-45379 Msa1410290:CDS 35.0%
GCCAGAAAATTAACCATAAC+CGG + tig0023648:45505-45524 None:intergenic 35.0%
CTCGTGAGATCAAAATTTGT+TGG + tig0023648:45693-45712 None:intergenic 35.0%
GGTTATGGATACAACTTACA+AGG + tig0023648:45760-45779 None:intergenic 35.0%
ATCCATAACCTTTGGTATAG+TGG - tig0023648:45770-45789 Msa1410290:intron 35.0%
! CATCTTGTTATAGCAGTCTT+GGG - tig0023648:45794-45813 Msa1410290:intron 35.0%
! ATCTTGTTATAGCAGTCTTG+GGG - tig0023648:45795-45814 Msa1410290:intron 35.0%
!!! GGAATGGTTTGTTTCCATTT+TGG - tig0023648:45885-45904 Msa1410290:intron 35.0%
!!! TTTTCATCCGTTGATTTTGC+AGG - tig0023648:45939-45958 Msa1410290:intron 35.0%
! AAGAATTTGGAACATGCTCA+AGG + tig0023648:46244-46263 None:intergenic 35.0%
TTCAACAAAATGAGGGAGTT+AGG - tig0023648:46341-46360 Msa1410290:intron 35.0%
GCTATATTGAAGGAGATTGA+AGG - tig0023648:46647-46666 Msa1410290:CDS 35.0%
CATAAAGGCGAAACAAAGTT+GGG + tig0023648:46703-46722 None:intergenic 35.0%
TTTCGCCTTTATGCAATACT+GGG - tig0023648:46710-46729 Msa1410290:CDS 35.0%
GAAGAAAATTGAAGAAGCAG+AGG - tig0023648:46826-46845 Msa1410290:CDS 35.0%
CATAATAGGTCCAATAACCT+GGG - tig0023648:46982-47001 Msa1410290:CDS 35.0%
AGAAAATCTTCTCTGCGTTA+TGG + tig0023648:47153-47172 None:intergenic 35.0%
! GAAACTGGAGTTTTCCTAAA+AGG + tig0023648:47340-47359 None:intergenic 35.0%
CAATCAAGCAAATCAGAAAC+TGG + tig0023648:47355-47374 None:intergenic 35.0%
!! TGGGTTTTGCTTTAAGCTTG+AGG - tig0023648:44447-44466 Msa1410290:CDS 40.0%
!! GGGTTTTGCTTTAAGCTTGA+GGG - tig0023648:44448-44467 Msa1410290:CDS 40.0%
TGAGGGTTTAAGCAGTCATT+CGG - tig0023648:44465-44484 Msa1410290:CDS 40.0%
TTGATTACCTTAGACGAGTG+AGG + tig0023648:44540-44559 None:intergenic 40.0%
! GCTGATTCTCATCCATTTGA+CGG - tig0023648:44694-44713 Msa1410290:CDS 40.0%
CTGATTCTCATCCATTTGAC+GGG - tig0023648:44695-44714 Msa1410290:CDS 40.0%
GATTGAAGATCCAGATGTAG+TGG - tig0023648:44792-44811 Msa1410290:CDS 40.0%
AAGGCGTAGAATGTATGGAA+GGG - tig0023648:45047-45066 Msa1410290:CDS 40.0%
AATGTATGGAAGGGCTTTAC+AGG - tig0023648:45056-45075 Msa1410290:CDS 40.0%
GAGTTAGAATACATCACTGG+TGG - tig0023648:45240-45259 Msa1410290:CDS 40.0%
ATGCTTTGTATAATGCAGGG+AGG + tig0023648:45266-45285 None:intergenic 40.0%
!!! CATCTCGTGTTTTGATTGAG+TGG - tig0023648:45286-45305 Msa1410290:CDS 40.0%
ATTTAGGAACCAACCAGCAA+TGG + tig0023648:45316-45335 None:intergenic 40.0%
TGGTTCCTAAATCCCAATAC+GGG - tig0023648:45324-45343 Msa1410290:CDS 40.0%
TGAAAGTTCAACACAGAGGT+GGG + tig0023648:45401-45420 None:intergenic 40.0%
ATGCTGAAAGTTCAACACAG+AGG + tig0023648:45405-45424 None:intergenic 40.0%
! GCCGGTTATGGTTAATTTTC+TGG - tig0023648:45501-45520 Msa1410290:CDS 40.0%
TAAGTTAGACGAGAGAGAGT+GGG + tig0023648:45615-45634 None:intergenic 40.0%
ATAAGTTAGACGAGAGAGAG+TGG + tig0023648:45616-45635 None:intergenic 40.0%
CCAAGACTGCTATAACAAGA+TGG + tig0023648:45796-45815 None:intergenic 40.0%
! CCATCTTGTTATAGCAGTCT+TGG - tig0023648:45793-45812 Msa1410290:intron 40.0%
TGGGGTTGACAACTAAAGTT+AGG - tig0023648:45848-45867 Msa1410290:intron 40.0%
ACAACTAAAGTTAGGCCAGA+AGG - tig0023648:45856-45875 Msa1410290:intron 40.0%
CAACTAAAGTTAGGCCAGAA+GGG - tig0023648:45857-45876 Msa1410290:intron 40.0%
AACTAAAGTTAGGCCAGAAG+GGG - tig0023648:45858-45877 Msa1410290:intron 40.0%
CAACATGCCTGCAAAATCAA+CGG + tig0023648:45949-45968 None:intergenic 40.0%
CTTTCTTTGGTTGGAACTGT+AGG - tig0023648:46109-46128 Msa1410290:intron 40.0%
!! TCAAGGTATTGTTCTGCCTT+TGG + tig0023648:46227-46246 None:intergenic 40.0%
! GTGCTAGTCTGGAAAATTTG+AGG - tig0023648:46303-46322 Msa1410290:intron 40.0%
GGAAAATTTGAGGAAAACGG+AGG - tig0023648:46313-46332 Msa1410290:intron 40.0%
TTGCAAGCAAATGCTGTAAC+AGG + tig0023648:46371-46390 None:intergenic 40.0%
!! AGCTGACGTGTTACTTATGA+TGG - tig0023648:46433-46452 Msa1410290:intron 40.0%
!! GCTGACGTGTTACTTATGAT+GGG - tig0023648:46434-46453 Msa1410290:intron 40.0%
!! CGTGTTACTTATGATGGGAA+AGG - tig0023648:46439-46458 Msa1410290:intron 40.0%
GTTAAGAGAATGAAGGCAGA+AGG - tig0023648:46548-46567 Msa1410290:intron 40.0%
TTGAACCAGACCATCTAACA+TGG - tig0023648:46573-46592 Msa1410290:intron 40.0%
TGAACCAGACCATCTAACAT+GGG - tig0023648:46574-46593 Msa1410290:intron 40.0%
GCATAAAGGCGAAACAAAGT+TGG + tig0023648:46704-46723 None:intergenic 40.0%
GTTTCGCCTTTATGCAATAC+TGG - tig0023648:46709-46728 Msa1410290:CDS 40.0%
CCTTTATGCAATACTGGGTA+GGG - tig0023648:46715-46734 Msa1410290:CDS 40.0%
CTGATGAAGTGGAGAGAATT+TGG - tig0023648:46738-46757 Msa1410290:CDS 40.0%
TGAAGTGGAGAGAATTTGGA+AGG - tig0023648:46742-46761 Msa1410290:CDS 40.0%
!!! CAGGAGTACTGAGTAGTTTT+GGG + tig0023648:46891-46910 None:intergenic 40.0%
!!! TCAGGAGTACTGAGTAGTTT+TGG + tig0023648:46892-46911 None:intergenic 40.0%
AAGGCATAAGATGCTAGACA+AGG - tig0023648:46922-46941 Msa1410290:CDS 40.0%
AGGCATAAGATGCTAGACAA+GGG - tig0023648:46923-46942 Msa1410290:CDS 40.0%
TAAGATGCTAGACAAGGGTA+AGG - tig0023648:46928-46947 Msa1410290:CDS 40.0%
!! GAAGATAGTGGGTGCATAAT+AGG - tig0023648:46968-46987 Msa1410290:CDS 40.0%
GCATAATAGGTCCAATAACC+TGG - tig0023648:46981-47000 Msa1410290:CDS 40.0%
ACAATAGCATCCCAGGTTAT+TGG + tig0023648:46995-47014 None:intergenic 40.0%
AAGAGAAACAATAGCATCCC+AGG + tig0023648:47002-47021 None:intergenic 40.0%
GTTTCTCTTTATGTTCGAGC+AGG - tig0023648:47013-47032 Msa1410290:CDS 40.0%
TTATGGAGCAGTATGCAAAG+AGG - tig0023648:47119-47138 Msa1410290:intron 40.0%
TATGGAGCAGTATGCAAAGA+GGG - tig0023648:47120-47139 Msa1410290:intron 40.0%
!!! TGGCTCTAGTTGATCCTTTT+AGG - tig0023648:47323-47342 Msa1410290:intron 40.0%
! GCGTATTCCAACAAAGCGTT+AGG + tig0023648:44676-44695 None:intergenic 45.0%
TTCTCATCCATTTGACGGGA+CGG - tig0023648:44699-44718 Msa1410290:CDS 45.0%
TGATGCTGGTAGCAAGAACA+AGG - tig0023648:44765-44784 Msa1410290:CDS 45.0%
! GAAGATCCAGATGTAGTGGA+TGG - tig0023648:44796-44815 Msa1410290:CDS 45.0%
CTATCTCCATCCACTACATC+TGG + tig0023648:44805-44824 None:intergenic 45.0%
CGAAGATGAGCTGGAGTTAT+CGG - tig0023648:44849-44868 Msa1410290:CDS 45.0%
GAAGATGAGCTGGAGTTATC+GGG - tig0023648:44850-44869 Msa1410290:CDS 45.0%
TTCTACTCTCAACAACTGGG+TGG - tig0023648:44969-44988 Msa1410290:CDS 45.0%
CTCAACAACTGGGTGGAAAA+AGG - tig0023648:44976-44995 Msa1410290:CDS 45.0%
CAACTGGGTGGAAAAAGGTA+AGG - tig0023648:44981-45000 Msa1410290:CDS 45.0%
TGCTCTTGAACAGTCTTCGA+AGG - tig0023648:45028-45047 Msa1410290:CDS 45.0%
! CTTCGAAGGCGTAGAATGTA+TGG - tig0023648:45042-45061 Msa1410290:CDS 45.0%
! GAAGGCGTAGAATGTATGGA+AGG - tig0023648:45046-45065 Msa1410290:CDS 45.0%
!!! TCGTGTTTTGATTGAGTGGC+CGG - tig0023648:45290-45309 Msa1410290:CDS 45.0%
GGTTCCTAAATCCCAATACG+GGG - tig0023648:45325-45344 Msa1410290:CDS 45.0%
GTTCCTAAATCCCAATACGG+GGG - tig0023648:45326-45345 Msa1410290:CDS 45.0%
TTCCTAAATCCCAATACGGG+GGG - tig0023648:45327-45346 Msa1410290:CDS 45.0%
GAAAGTTCAACACAGAGGTG+GGG + tig0023648:45400-45419 None:intergenic 45.0%
CTGAAAGTTCAACACAGAGG+TGG + tig0023648:45402-45421 None:intergenic 45.0%
TCAGCATCCCACTTGTTTAC+TGG - tig0023648:45418-45437 Msa1410290:CDS 45.0%
! GACAGTAACAGAAGTGGACT+TGG + tig0023648:45476-45495 None:intergenic 45.0%
CCAGAAGACAGTAACAGAAG+TGG + tig0023648:45482-45501 None:intergenic 45.0%
CCACTTCTGTTACTGTCTTC+TGG - tig0023648:45479-45498 Msa1410290:CDS 45.0%
TTCTGTTACTGTCTTCTGGC+CGG - tig0023648:45483-45502 Msa1410290:CDS 45.0%
GGCCACTATACCAAAGGTTA+TGG + tig0023648:45775-45794 None:intergenic 45.0%
CAAGATGGCCACTATACCAA+AGG + tig0023648:45781-45800 None:intergenic 45.0%
TTGGTTGGAACTGTAGGTCT+TGG - tig0023648:46115-46134 Msa1410290:intron 45.0%
TGGAACTGTAGGTCTTGGAT+TGG - tig0023648:46120-46139 Msa1410290:intron 45.0%
GATTTGATTGCCAAGTTGCG+TGG - tig0023648:46197-46216 Msa1410290:intron 45.0%
! TTTTTCTATAAGCCCGGCTG+AGG + tig0023648:46621-46640 None:intergenic 45.0%
GCCTTTATGCAATACTGGGT+AGG - tig0023648:46714-46733 Msa1410290:CDS 45.0%
CCCTACCCAGTATTGCATAA+AGG + tig0023648:46718-46737 None:intergenic 45.0%
ACCTTGCTGCAATTGAAGCT+TGG - tig0023648:46795-46814 Msa1410290:CDS 45.0%
CCTTGCTGCAATTGAAGCTT+GGG - tig0023648:46796-46815 Msa1410290:CDS 45.0%
CTTGCTGCAATTGAAGCTTG+GGG - tig0023648:46797-46816 Msa1410290:CDS 45.0%
!!! GAGTACTGAGTAGTTTTGGG+CGG + tig0023648:46888-46907 None:intergenic 45.0%
TCGAGCAGGAGAAGTTGAAA+AGG - tig0023648:47027-47046 Msa1410290:CDS 45.0%
ATGGAGCAGTATGCAAAGAG+GGG - tig0023648:47121-47140 Msa1410290:intron 45.0%
!! CCAAAGCTTTGTTGGGGAAT+AGG + tig0023648:47294-47313 None:intergenic 45.0%
CCTATTCCCCAACAAAGCTT+TGG - tig0023648:47291-47310 Msa1410290:intron 45.0%
AAGGATCAACTAGAGCCAAC+TGG + tig0023648:47321-47340 None:intergenic 45.0%
!!! ATTAAAATTTTATAAGTATA+AGG + tig0023648:46482-46501 None:intergenic 5.0%
CACAAGAACAAGAAGCCCCT+TGG + tig0023648:44639-44658 None:intergenic 50.0%
AACTTCTCCGTCCCGTCAAA+TGG + tig0023648:44709-44728 None:intergenic 50.0%
GGAAAGTTGACGTCTGCTCA+CGG + tig0023648:44734-44753 None:intergenic 50.0%
TCCTCACAAGCTACTGATGC+TGG - tig0023648:44751-44770 Msa1410290:CDS 50.0%
! ACCAGCATCAGTAGCTTGTG+AGG + tig0023648:44755-44774 None:intergenic 50.0%
TGCTGGTAGCAAGAACAAGG+AGG - tig0023648:44768-44787 Msa1410290:CDS 50.0%
AGACGACAACGAAGATGAGC+TGG - tig0023648:44840-44859 Msa1410290:CDS 50.0%
TCCTAAATCCCAATACGGGG+GGG - tig0023648:45328-45347 Msa1410290:CDS 50.0%
TACTGTCTTCTGGCCGGTTA+TGG - tig0023648:45489-45508 Msa1410290:CDS 50.0%
GTCATTCCATGCAGCTCTCT+GGG - tig0023648:45829-45848 Msa1410290:intron 50.0%
TCATTCCATGCAGCTCTCTG+GGG - tig0023648:45830-45849 Msa1410290:intron 50.0%
ACTGGCTAACTGTGCTAGTC+TGG - tig0023648:46292-46311 Msa1410290:intron 50.0%
ACTGCCCATGTTAGATGGTC+TGG + tig0023648:46581-46600 None:intergenic 50.0%
CCAAGACTGCCCATGTTAGA+TGG + tig0023648:46586-46605 None:intergenic 50.0%
CCATCTAACATGGGCAGTCT+TGG - tig0023648:46583-46602 Msa1410290:intron 50.0%
TAACATGGGCAGTCTTGGCT+AGG - tig0023648:46588-46607 Msa1410290:intron 50.0%
AGGCTTGTGAGTCAAAGCCT+CGG - tig0023648:46762-46781 Msa1410290:CDS 50.0%
CCCAAGCTTCAATTGCAGCA+AGG + tig0023648:46799-46818 None:intergenic 50.0%
CTGCAATTGAAGCTTGGGGA+AGG - tig0023648:46801-46820 Msa1410290:CDS 50.0%
TTCGTTCTGTGCTCTAGCAC+AGG - tig0023648:47210-47229 Msa1410290:CDS 50.0%
AACGCCAAACTACCGGCATA+TGG - tig0023648:47241-47260 Msa1410290:intron 50.0%
ACGCCAAACTACCGGCATAT+GGG - tig0023648:47242-47261 Msa1410290:intron 50.0%
GATCCCATATGCCGGTAGTT+TGG + tig0023648:47248-47267 None:intergenic 50.0%
AACTACCGGCATATGGGATC+AGG - tig0023648:47248-47267 Msa1410290:intron 50.0%
ACTACCGGCATATGGGATCA+GGG - tig0023648:47249-47268 Msa1410290:intron 50.0%
! TTCCCCAACAAAGCTTTGGC+TGG - tig0023648:47295-47314 Msa1410290:intron 50.0%
!! TGGCCAGCCAAAGCTTTGTT+GGG + tig0023648:47301-47320 None:intergenic 50.0%
GGATTCGCCTCACTCGTCTA+AGG - tig0023648:44530-44549 Msa1410290:CDS 55.0%
AGGAACCAACCAGCAATGGC+CGG + tig0023648:45312-45331 None:intergenic 55.0%
AGATTTCGCCCCCCCGTATT+GGG + tig0023648:45339-45358 None:intergenic 55.0%
GGCAGTGGGATTTCGTCCAA+TGG + tig0023648:45379-45398 None:intergenic 55.0%
ATAGCAGTCTTGGGGTTGCC+AGG - tig0023648:45803-45822 Msa1410290:intron 55.0%
GCTGCATGGAATGACCAACC+TGG + tig0023648:45824-45843 None:intergenic 55.0%
GGTCATTCCATGCAGCTCTC+TGG - tig0023648:45828-45847 Msa1410290:intron 55.0%
AAGTTAGGCCAGAAGGGGAG+CGG - tig0023648:45863-45882 Msa1410290:intron 55.0%
CTTTGGCAGACCACGCAACT+TGG + tig0023648:46210-46229 None:intergenic 55.0%
CAAGTTGCGTGGTCTGCCAA+AGG - tig0023648:46208-46227 Msa1410290:intron 55.0%
GCTAGGCATTATGCCTCAGC+CGG - tig0023648:46605-46624 Msa1410290:intron 55.0%
CTAGGCATTATGCCTCAGCC+GGG - tig0023648:46606-46625 Msa1410290:intron 55.0%
ACTGGGTAGGGCTGATGAAG+TGG - tig0023648:46727-46746 Msa1410290:CDS 55.0%
GGCTTGTGAGTCAAAGCCTC+GGG - tig0023648:46763-46782 Msa1410290:CDS 55.0%
! TGAGTCAAAGCCTCGGGTTG+AGG - tig0023648:46769-46788 Msa1410290:CDS 55.0%
! GGCAGACGACGTTTTGCAGA+AGG - tig0023648:47048-47067 Msa1410290:CDS 55.0%
CTCTCCCTGATCCCATATGC+CGG + tig0023648:47256-47275 None:intergenic 55.0%
!! GGCCAGCCAAAGCTTTGTTG+GGG + tig0023648:47300-47319 None:intergenic 55.0%
! CTGGCCAGCCAAAGCTTTGT+TGG + tig0023648:47302-47321 None:intergenic 55.0%
! CAAAGCTTTGGCTGGCCAGT+TGG - tig0023648:47303-47322 Msa1410290:intron 55.0%
TGTGGGCTCTTCGTCGAGCT+TGG - tig0023648:44509-44528 Msa1410290:CDS 60.0%
ATTGAGTGGCCGGCCATTGC+TGG - tig0023648:45300-45319 Msa1410290:CDS 60.0%
GCCCCCCCGTATTGGGATTT+AGG + tig0023648:45332-45351 None:intergenic 60.0%
GAGATTTCGCCCCCCCGTAT+TGG + tig0023648:45340-45359 None:intergenic 60.0%
CAACACAGAGGTGGGGCAGT+GGG + tig0023648:45393-45412 None:intergenic 60.0%
TCAACACAGAGGTGGGGCAG+TGG + tig0023648:45394-45413 None:intergenic 60.0%
GAGAGAGTGGGAGCAGAGTG+AGG + tig0023648:45603-45622 None:intergenic 60.0%
CAGTCTTGGGGTTGCCAGGT+TGG - tig0023648:45807-45826 Msa1410290:intron 60.0%
GTCAACCCCAGAGAGCTGCA+TGG + tig0023648:45838-45857 None:intergenic 60.0%
AGTTAGGCCAGAAGGGGAGC+GGG - tig0023648:45864-45883 Msa1410290:intron 60.0%
AACCATTCCCGCTCCCCTTC+TGG + tig0023648:45874-45893 None:intergenic 60.0%
GCAAGGTAGTCCTCAACCCG+AGG + tig0023648:46782-46801 None:intergenic 60.0%
CGGCATATGGGATCAGGGAG+AGG - tig0023648:47254-47273 Msa1410290:intron 60.0%
AGTGGCCGGCCATTGCTGGT+TGG - tig0023648:45304-45323 Msa1410290:CDS 65.0%
GGCCAGAAGGGGAGCGGGAA+TGG - tig0023648:45869-45888 Msa1410290:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023648 gene 44338 47375 44338 ID=Msa1410290;Name=Msa1410290
tig0023648 mRNA 44338 47375 44338 ID=Msa1410290-mRNA-1;Parent=Msa1410290;Name=Msa1410290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.2|0|0.66|0.6|0.66|6|0|590
tig0023648 exon 47371 47375 47371 ID=Msa1410290-mRNA-1:exon:26506;Parent=Msa1410290-mRNA-1
tig0023648 exon 47272 47278 47272 ID=Msa1410290-mRNA-1:exon:26505;Parent=Msa1410290-mRNA-1
tig0023648 exon 47162 47250 47162 ID=Msa1410290-mRNA-1:exon:26504;Parent=Msa1410290-mRNA-1
tig0023648 exon 46890 47080 46890 ID=Msa1410290-mRNA-1:exon:26503;Parent=Msa1410290-mRNA-1
tig0023648 exon 46636 46871 46636 ID=Msa1410290-mRNA-1:exon:26502;Parent=Msa1410290-mRNA-1
tig0023648 exon 44338 45582 44338 ID=Msa1410290-mRNA-1:exon:26501;Parent=Msa1410290-mRNA-1
tig0023648 CDS 47371 47375 47371 ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648 CDS 47272 47278 47272 ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648 CDS 47162 47250 47162 ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648 CDS 46890 47080 46890 ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648 CDS 46636 46871 46636 ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648 CDS 44338 45582 44338 ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
Gene Sequence

>Msa1410290

ATGATGAGTAAGCTTGAGGGTTTAAGCAGTCATTCGGTCGCTGTGAGCAATATCAATATGTGGGCTCTTCGTCGAGCTTGGATTCGCCTCACTCGTCTAAGAAACCAAGGGGCTTCTTGTTCTTGTGTGAAATTAATAGTTCCTAACGCTTTGTTGGAATACGCTGATTCTCATCCATTTGACGGGACGGAGAAGTTTACCGTGAGCAGACGTCAACTTTCCTCACAAGCTACTGATGCTGGTAGCAAGAACAAGGAGGAGATTGAAGATCCAGATGTAGTGGATGGAGATAACGACAACGAAGATGAGCTGGAGTTATCGGGTACTGAGACTGTTTCACGTCACAAAAAATTACCAACTACAAACATTCAATCCCAACTATTCAAAGCAATTGTAAGCGTTTCAGATTTGTCCGTTGATTCTACTCTCAACAACTGGGTGGAAAAAGGTAAGGAATTAAGCAGGCAAGAGATCGTGTTGCTCTTGAACAGTCTTCGAAGGCGTAGAATGTATGGAAGGGCTTTACAGGTCTTGGATTGGCTAGAGTCAAACAAAAAGCTTGAATATACTGAGAAAGAATATGCTTCTAAACTTGATTTGATTGCCAAGTTGCGTGGTCTGCCAAAGGCAGAACAATACCTTGAGCATGTTCCAAATTCTTTTAGAGGAGAATTATTATACAGAACACTACTGGCTAACTGTGCTAGTCTGGAAAATTTGAGGAAAACGGAGGAAACATTCAACAAAATGAGGGAGTTAGGTTTTCCTGTTACAGCATTTGCTTGCAACCAGTTGCTTCTCATTTATAAGAGTGTTGACAAGAAAAAAATAGCTGACGTGTTACTTATGATGGGAAAGGAGAATGTCAAACCTTCTCCTTATACTTATAAAATTTTAATAGATGTAAAGAGCATGTCTAATGATATTGATGGAATGTCTCAAATTGTTAAGAGAATGAAGGCAGAAGGTGTTGAACCAGACCATCTAACATGGGCAGTCTTGGCTAGGCATTATGCCTCAGCCGGGCTTATAGAAAAAACTGAAGCTATATTGAAGGAGATTGAAGGTGAAAACTTGAAAGACAATATGTGGGTATGCCCAACTTTGTTTCGCCTTTATGCAATACTGGGTAGGGCTGATGAAGTGGAGAGAATTTGGAAGGCTTGTGAGTCAAAGCCTCGGGTTGAGGACTACCTTGCTGCAATTGAAGCTTGGGGAAGGTTGAAGAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATGATGTCAATTAAATGGAAACTTACCGCCCAAAACTACTCAGTACTCCTGAAAATTTATACAAGGCATAAGATGCTAGACAAGGGTAAGGATCTTATTAAGAAAATGGAAGATAGTGGGTGCATAATAGGTCCAATAACCTGGGATGCTATTGTTTCTCTTTATGTTCGAGCAGGAGAAGTTGAAAAGGCAGACGACGTTTTGCAGAAGGCACTACAACAGCAGAATAAGAAGCCATTGTTCACTACTTATATGACTATTATGGAGCAGTATGCAAAGAGGGGTGACGTCCATAACGCAGAGAAGATTTTCTATAGATTGAGACAAGCTAATCATATTTCTAGAATAAGTTCGTTCTGTGCTCTAGCACAGGCTTATAAAAACGCCAAACTACCGGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACCTATTCCCCAACAAAGCTTTGGCTGGCCAGTTGGCTCTAGTTGATCCTTTTAGGAAAACTCCAGTTTCTGATTTGCTTGATTGA
Protein sequence

>Msa1410290

MMSKLEGLSSHSVAVSNINMWALRRAWIRLTRLRNQGASCSCVKLIVPNALLEYADSHPFDGTEKFTVSRRQLSSQATDAGSKNKEEIEDPDVVDGDNDNEDELELSGTETVSRHKKLPTTNIQSQLFKAIVSVSDLSVDSTLNNWVEKGKELSRQEIVLLLNSLRRRRMYGRALQVLDWLESNKKLEYTEKEYASKLDLIAKLRGLPKAEQYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGFPVTAFACNQLLLIYKSVDKKKIADVLLMMGKENVKPSPYTYKILIDVKSMSNDIDGMSQIVKRMKAEGVEPDHLTWAVLARHYASAGLIEKTEAILKEIEGENLKDNMWVCPTLFRLYAILGRADEVERIWKACESKPRVEDYLAAIEAWGRLKKIEEAEAVFEMMSIKWKLTAQNYSVLLKIYTRHKMLDKGKDLIKKMEDSGCIIGPITWDAIVSLYVRAGEVEKADDVLQKALQQQNKKPLFTTYMTIMEQYAKRGDVHNAEKIFYRLRQANHISRISSFCALAQAYKNAKLPAYGIRERMKADNLFPNKALAGQLALVDPFRKTPVSDLLD*