AlfalfaGEDB | Msa1410290

M. sativa cultivar zhongmu-4 / Msa1410290

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1410290	sp\|Q9C977\|PP135_ARATH	50.586	597	268	5	20	590	1	596	0.0	592

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1410290	A0A396JNH5	76.355	609	103	9	20	590	1	606	0.0	868

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010680	Msa1410290	0.975280	1.154272e-139	-8.615850e-47
Msa0091010	Msa1410290	0.875788	2.338356e-68	-8.615850e-47
Msa0183370	Msa1410290	0.909773	3.930124e-82	-8.615850e-47
Msa0267310	Msa1410290	0.801239	9.891621e-49	-8.615850e-47
Msa0530950	Msa1410290	0.803443	3.477457e-49	-8.615850e-47
Msa0580420	Msa1410290	0.810701	1.011182e-50	-8.615850e-47
Msa0779240	Msa1410290	0.803035	4.224881e-49	-8.615850e-47
Msa0795920	Msa1410290	0.825229	5.251386e-54	-8.615850e-47
Msa0816640	Msa1410290	0.807018	6.203948e-50	-8.615850e-47
Msa0828570	Msa1410290	0.802799	4.725456e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1410290	MtrunA17_Chr1g0171501	76.355	609	103	9	20	590	1	606	0.0	868
Msa1410290	MtrunA17_Chr7g0256181	53.810	630	225	8	20	590	1	623	0.0	639
Msa1410290	MtrunA17_Chr1g0211201	66.304	184	12	2	283	466	1	134	1.74e-70	223
Msa1410290	MtrunA17_Chr2g0328121	28.541	473	327	5	120	581	39	511	1.27e-61	212
Msa1410290	MtrunA17_Chr1g0211211	91.954	87	7	0	504	590	1	87	4.77e-49	165
Msa1410290	MtrunA17_Chr8g0368151	28.692	474	314	12	111	568	13	478	1.84e-47	173
Msa1410290	MtrunA17_Chr1g0185601	25.870	460	324	8	143	589	56	511	2.50e-39	150
Msa1410290	MtrunA17_Chr2g0282091	24.948	485	319	12	108	564	10	477	4.02e-39	150
Msa1410290	MtrunA17_Chr8g0359961	26.097	433	295	11	120	534	28	453	1.01e-37	146
Msa1410290	MtrunA17_Chr2g0303221	25.175	429	293	12	127	536	33	452	2.26e-33	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1410290	AT1G80270.1	50.586	597	268	5	20	590	1	596	0.0	592
Msa1410290	AT1G80270.3	50.586	597	268	5	20	590	1	596	0.0	592
Msa1410290	AT1G80270.2	50.586	597	268	5	20	590	1	596	0.0	592
Msa1410290	AT1G80270.5	50.586	597	268	5	20	590	1	596	0.0	592
Msa1410290	AT1G80270.4	50.586	597	268	5	20	590	1	596	0.0	592
Msa1410290	AT1G15480.1	50.336	596	269	6	20	590	1	594	0.0	569
Msa1410290	AT3G15590.1	48.515	505	251	4	93	590	107	609	9.63e-160	470
Msa1410290	AT3G15590.2	48.515	505	251	4	93	590	107	609	9.63e-160	470
Msa1410290	AT1G07590.1	27.912	455	318	4	137	581	79	533	4.24e-51	184
Msa1410290	AT1G60770.1	27.646	463	311	11	123	569	25	479	3.33e-45	167

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Find 134 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAAAGACAATATG+TGG	0.463385	tig0023648:-45019	Msa1410290:CDS
AAACTTGAAAGACAATATGT+GGG	0.657774	tig0023648:-45018	Msa1410290:CDS
AACGCCAAACTACCGGCATA+TGG	0.391385	tig0023648:-44450	Msa1410290:CDS
AACTACCGGCATATGGGATC+AGG	0.402981	tig0023648:-44443	Msa1410290:CDS
AACTTCTCCGTCCCGTCAAA+TGG	0.425798	tig0023648:+46985	None:intergenic
AAGAATTTGGAACATGCTCA+AGG	0.593893	tig0023648:+45450	None:intergenic
AAGAGAAACAATAGCATCCC+AGG	0.527523	tig0023648:+44692	None:intergenic
AAGGATCAACTAGAGCCAAC+TGG	0.503578	tig0023648:+44373	None:intergenic
AAGGCATAAGATGCTAGACA+AGG	0.675869	tig0023648:-44769	Msa1410290:CDS
AAGGCGTAGAATGTATGGAA+GGG	0.649552	tig0023648:-46644	Msa1410290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTGTCGAGATTTACAATT+TGG	+	tig0023648:44352-44371	None:intergenic	30.0%
TGTGAGCAATATCAATATGT+GGG	-	tig0023648:44492-44511	Msa1410290:CDS	30.0%
AATACTGGTAAAGAAGAATG+AGG	+	tig0023648:44567-44586	None:intergenic	30.0%
AAAAAGGTAAGGAATTAAGC+AGG	-	tig0023648:44992-45011	Msa1410290:CDS	30.0%
AATGAGTTAGAATACATCAC+TGG	-	tig0023648:45237-45256	Msa1410290:CDS	30.0%
ATGATGCTTTGTATAATGCA+GGG	+	tig0023648:45269-45288	None:intergenic	30.0%
AAAATCACCAGTAAACAAGT+GGG	+	tig0023648:45428-45447	None:intergenic	30.0%
AAAAATCACCAGTAAACAAG+TGG	+	tig0023648:45429-45448	None:intergenic	30.0%
TTGGCTGAAAAAAAATACTG+GGG	+	tig0023648:45457-45476	None:intergenic	30.0%
CTTGGCTGAAAAAAAATACT+GGG	+	tig0023648:45458-45477	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023648	gene	44338	47375	44338	ID=Msa1410290;Name=Msa1410290
tig0023648	mRNA	44338	47375	44338	ID=Msa1410290-mRNA-1;Parent=Msa1410290;Name=Msa1410290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.2\|0\|0.66\|0.6\|0.66\|6\|0\|590
tig0023648	exon	47371	47375	47371	ID=Msa1410290-mRNA-1:exon:26506;Parent=Msa1410290-mRNA-1
tig0023648	exon	47272	47278	47272	ID=Msa1410290-mRNA-1:exon:26505;Parent=Msa1410290-mRNA-1
tig0023648	exon	47162	47250	47162	ID=Msa1410290-mRNA-1:exon:26504;Parent=Msa1410290-mRNA-1
tig0023648	exon	46890	47080	46890	ID=Msa1410290-mRNA-1:exon:26503;Parent=Msa1410290-mRNA-1
tig0023648	exon	46636	46871	46636	ID=Msa1410290-mRNA-1:exon:26502;Parent=Msa1410290-mRNA-1
tig0023648	exon	44338	45582	44338	ID=Msa1410290-mRNA-1:exon:26501;Parent=Msa1410290-mRNA-1
tig0023648	CDS	47371	47375	47371	ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648	CDS	47272	47278	47272	ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648	CDS	47162	47250	47162	ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648	CDS	46890	47080	46890	ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648	CDS	46636	46871	46636	ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1
tig0023648	CDS	44338	45582	44338	ID=Msa1410290-mRNA-1:cds;Parent=Msa1410290-mRNA-1

Gene Sequence

>Msa1410290

ATGATGAGTAAGCTTGAGGGTTTAAGCAGTCATTCGGTCGCTGTGAGCAATATCAATATGTGGGCTCTTCGTCGAGCTTGGATTCGCCTCACTCGTCTAAGAAACCAAGGGGCTTCTTGTTCTTGTGTGAAATTAATAGTTCCTAACGCTTTGTTGGAATACGCTGATTCTCATCCATTTGACGGGACGGAGAAGTTTACCGTGAGCAGACGTCAACTTTCCTCACAAGCTACTGATGCTGGTAGCAAGAACAAGGAGGAGATTGAAGATCCAGATGTAGTGGATGGAGATAACGACAACGAAGATGAGCTGGAGTTATCGGGTACTGAGACTGTTTCACGTCACAAAAAATTACCAACTACAAACATTCAATCCCAACTATTCAAAGCAATTGTAAGCGTTTCAGATTTGTCCGTTGATTCTACTCTCAACAACTGGGTGGAAAAAGGTAAGGAATTAAGCAGGCAAGAGATCGTGTTGCTCTTGAACAGTCTTCGAAGGCGTAGAATGTATGGAAGGGCTTTACAGGTCTTGGATTGGCTAGAGTCAAACAAAAAGCTTGAATATACTGAGAAAGAATATGCTTCTAAACTTGATTTGATTGCCAAGTTGCGTGGTCTGCCAAAGGCAGAACAATACCTTGAGCATGTTCCAAATTCTTTTAGAGGAGAATTATTATACAGAACACTACTGGCTAACTGTGCTAGTCTGGAAAATTTGAGGAAAACGGAGGAAACATTCAACAAAATGAGGGAGTTAGGTTTTCCTGTTACAGCATTTGCTTGCAACCAGTTGCTTCTCATTTATAAGAGTGTTGACAAGAAAAAAATAGCTGACGTGTTACTTATGATGGGAAAGGAGAATGTCAAACCTTCTCCTTATACTTATAAAATTTTAATAGATGTAAAGAGCATGTCTAATGATATTGATGGAATGTCTCAAATTGTTAAGAGAATGAAGGCAGAAGGTGTTGAACCAGACCATCTAACATGGGCAGTCTTGGCTAGGCATTATGCCTCAGCCGGGCTTATAGAAAAAACTGAAGCTATATTGAAGGAGATTGAAGGTGAAAACTTGAAAGACAATATGTGGGTATGCCCAACTTTGTTTCGCCTTTATGCAATACTGGGTAGGGCTGATGAAGTGGAGAGAATTTGGAAGGCTTGTGAGTCAAAGCCTCGGGTTGAGGACTACCTTGCTGCAATTGAAGCTTGGGGAAGGTTGAAGAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATGATGTCAATTAAATGGAAACTTACCGCCCAAAACTACTCAGTACTCCTGAAAATTTATACAAGGCATAAGATGCTAGACAAGGGTAAGGATCTTATTAAGAAAATGGAAGATAGTGGGTGCATAATAGGTCCAATAACCTGGGATGCTATTGTTTCTCTTTATGTTCGAGCAGGAGAAGTTGAAAAGGCAGACGACGTTTTGCAGAAGGCACTACAACAGCAGAATAAGAAGCCATTGTTCACTACTTATATGACTATTATGGAGCAGTATGCAAAGAGGGGTGACGTCCATAACGCAGAGAAGATTTTCTATAGATTGAGACAAGCTAATCATATTTCTAGAATAAGTTCGTTCTGTGCTCTAGCACAGGCTTATAAAAACGCCAAACTACCGGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACCTATTCCCCAACAAAGCTTTGGCTGGCCAGTTGGCTCTAGTTGATCCTTTTAGGAAAACTCCAGTTTCTGATTTGCTTGATTGA

Protein sequence

>Msa1410290

MMSKLEGLSSHSVAVSNINMWALRRAWIRLTRLRNQGASCSCVKLIVPNALLEYADSHPFDGTEKFTVSRRQLSSQATDAGSKNKEEIEDPDVVDGDNDNEDELELSGTETVSRHKKLPTTNIQSQLFKAIVSVSDLSVDSTLNNWVEKGKELSRQEIVLLLNSLRRRRMYGRALQVLDWLESNKKLEYTEKEYASKLDLIAKLRGLPKAEQYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGFPVTAFACNQLLLIYKSVDKKKIADVLLMMGKENVKPSPYTYKILIDVKSMSNDIDGMSQIVKRMKAEGVEPDHLTWAVLARHYASAGLIEKTEAILKEIEGENLKDNMWVCPTLFRLYAILGRADEVERIWKACESKPRVEDYLAAIEAWGRLKKIEEAEAVFEMMSIKWKLTAQNYSVLLKIYTRHKMLDKGKDLIKKMEDSGCIIGPITWDAIVSLYVRAGEVEKADDVLQKALQQQNKKPLFTTYMTIMEQYAKRGDVHNAEKIFYRLRQANHISRISSFCALAQAYKNAKLPAYGIRERMKADNLFPNKALAGQLALVDPFRKTPVSDLLD*