AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0828570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828570 MtrunA17_Chr3g0094811 87.216 485 18 2 1 469 1 457 0.0 853
Msa0828570 MtrunA17_Chr2g0304931 60.435 460 132 6 27 467 35 463 0.0 560
Msa0828570 MtrunA17_Chr7g0221551 55.208 480 166 4 8 466 6 457 0.0 540
Msa0828570 MtrunA17_Chr3g0131731 53.659 492 176 8 2 469 1 464 0.0 537
Msa0828570 MtrunA17_Chr8g0385871 53.579 461 165 4 27 466 30 462 0.0 518
Msa0828570 MtrunA17_Chr1g0204191 54.422 441 162 6 27 466 88 490 6.71e-165 474
Msa0828570 MtrunA17_Chr3g0126051 41.068 487 217 8 17 466 10 463 1.96e-127 378
Msa0828570 MtrunA17_Chr3g0126031 41.393 488 224 10 8 467 4 457 4.21e-127 377
Msa0828570 MtrunA17_Chr5g0431301 41.358 486 225 9 10 467 9 462 1.78e-122 365
Msa0828570 MtrunA17_Chr1g0165811 56.655 293 81 4 3 279 4 266 6.14e-112 331
Msa0828570 MtrunA17_Chr4g0038311 38.316 475 216 14 27 466 31 463 7.17e-101 310
Msa0828570 MtrunA17_Chr7g0219051 38.057 494 233 11 9 469 14 467 5.85e-99 305
Msa0828570 MtrunA17_Chr1g0199991 37.628 489 234 13 10 467 9 457 1.47e-97 301
Msa0828570 MtrunA17_Chr1g0199971 35.815 497 248 13 2 467 1 457 1.87e-93 290
Msa0828570 MtrunA17_Chr4g0020241 37.143 490 229 13 7 467 49 488 7.10e-93 290
Msa0828570 MtrunA17_Chr3g0090331 37.983 466 217 12 27 466 71 490 7.44e-93 290
Msa0828570 MtrunA17_Chr3g0118841 38.095 462 208 13 28 462 76 486 1.85e-92 289
Msa0828570 MtrunA17_Chr1g0165821 75.419 179 42 1 288 466 2 178 3.19e-91 275
Msa0828570 MtrunA17_Chr1g0153881 37.100 469 217 12 25 468 84 499 3.69e-91 286
Msa0828570 MtrunA17_Chr2g0309541 35.887 496 238 18 10 468 13 465 4.32e-90 282
Msa0828570 MtrunA17_Chr3g0118851 37.849 465 206 14 28 462 75 486 8.47e-90 282
Msa0828570 MtrunA17_Chr4g0047861 36.268 477 224 12 29 467 52 486 2.34e-89 281
Msa0828570 MtrunA17_Chr2g0309511 36.441 472 228 15 27 468 35 464 4.27e-89 280
Msa0828570 MtrunA17_Chr2g0309521 36.152 473 228 15 27 468 35 464 1.17e-88 278
Msa0828570 MtrunA17_Chr2g0281621 35.010 477 228 11 29 467 34 466 7.61e-88 276
Msa0828570 MtrunA17_Chr3g0118881 36.345 476 216 15 28 467 75 499 1.33e-87 276
Msa0828570 MtrunA17_Chr7g0229651 64.179 201 70 1 215 413 1 201 7.37e-87 264
Msa0828570 MtrunA17_Chr1g0153941 34.866 522 228 16 4 468 48 514 1.78e-83 266
Msa0828570 MtrunA17_Chr2g0318911 35.319 470 236 14 27 468 36 465 9.34e-83 263
Msa0828570 MtrunA17_Chr3g0118831 35.234 491 205 13 4 467 56 460 7.46e-82 260
Msa0828570 MtrunA17_Chr4g0068841 33.072 511 249 14 8 467 10 478 1.24e-81 260
Msa0828570 MtrunA17_Chr3g0118891 35.714 462 187 15 28 462 75 453 1.43e-77 249
Msa0828570 MtrunA17_Chr3g0118861 34.947 475 195 15 27 466 72 467 6.90e-76 245
Msa0828570 MtrunA17_Chr2g0281641 36.041 394 206 10 110 468 7 389 7.71e-72 232
Msa0828570 MtrunA17_Chr4g0068861 32.543 464 219 18 8 421 57 476 2.94e-65 218
Msa0828570 MtrunA17_Chr7g0234051 29.588 534 262 19 1 462 1 492 1.23e-60 206
Msa0828570 MtrunA17_Chr8g0338461 30.862 499 222 17 43 465 44 495 9.33e-58 198
Msa0828570 MtrunA17_Chr7g0249431 28.868 530 265 19 10 465 7 498 7.77e-51 180
Msa0828570 MtrunA17_Chr7g0234041 30.909 440 211 15 43 424 40 444 8.70e-51 179
Msa0828570 MtrunA17_Chr1g0153931 46.445 211 60 5 30 215 75 257 7.52e-48 166
Msa0828570 MtrunA17_Chr2g0327401 28.603 458 238 19 44 467 100 502 6.61e-43 158
Msa0828570 MtrunA17_Chr2g0285371 25.690 471 266 14 37 465 41 469 2.77e-42 156
Msa0828570 MtrunA17_Chr4g0009711 27.983 461 246 18 30 449 39 454 2.76e-41 153
Msa0828570 MtrunA17_Chr1g0171411 29.741 464 233 18 42 469 81 487 3.90e-41 153
Msa0828570 MtrunA17_Chr4g0028271 28.696 460 224 17 44 462 97 493 4.55e-41 153
Msa0828570 MtrunA17_Chr4g0009701 26.294 483 258 18 30 465 39 470 1.09e-40 151
Msa0828570 MtrunA17_Chr4g0009681 27.183 504 273 18 1 456 1 458 1.45e-40 151
Msa0828570 MtrunA17_Chr2g0285351 24.569 464 263 16 46 465 49 469 1.72e-40 151
Msa0828570 MtrunA17_Chr1g0199171 28.222 450 235 16 46 462 92 486 2.21e-40 151
Msa0828570 MtrunA17_Chr4g0009651 26.446 484 256 18 30 465 39 470 7.02e-40 149
Msa0828570 MtrunA17_Chr4g0009661 26.151 478 265 18 30 465 39 470 1.92e-39 148
Msa0828570 MtrunA17_Chr7g0229631 55.303 132 29 3 20 151 24 125 2.15e-39 139
Msa0828570 MtrunA17_Chr2g0327371 27.837 467 248 17 47 463 86 513 4.20e-39 148
Msa0828570 MtrunA17_Chr2g0285381 25.806 465 246 14 47 465 54 465 8.31e-39 146
Msa0828570 MtrunA17_Chr4g0009671 25.745 470 262 16 37 465 12 435 1.53e-38 145
Msa0828570 MtrunA17_Chr4g0028261 27.484 473 214 17 44 462 118 515 3.02e-38 145
Msa0828570 MtrunA17_Chr3g0133011 25.969 516 275 18 9 465 29 496 2.84e-37 142
Msa0828570 MtrunA17_Chr4g0028281 28.194 454 236 20 44 463 95 492 1.36e-36 140
Msa0828570 MtrunA17_Chr3g0093971 24.551 501 285 17 1 460 1 449 2.93e-36 139
Msa0828570 MtrunA17_Chr2g0327381 26.763 482 253 15 44 463 94 537 1.54e-35 138
Msa0828570 MtrunA17_Chr4g0009721 25.670 448 226 16 30 449 35 403 7.25e-34 132
Msa0828570 MtrunA17_Chr4g0009641 24.852 507 266 19 3 465 11 446 4.51e-32 127
Msa0828570 MtrunA17_Chr4g0028241 26.882 465 234 19 43 463 88 490 5.21e-32 127
Msa0828570 MtrunA17_Chr1g0153921 32.377 244 131 9 231 468 3 218 4.37e-31 119
Msa0828570 MtrunA17_Chr7g0229621 53.543 127 23 4 15 135 5 101 1.32e-30 114
Msa0828570 MtrunA17_Chr7g0229611 51.969 127 25 4 15 135 5 101 2.13e-30 113
Msa0828570 MtrunA17_Chr5g0447441 24.297 498 283 19 1 465 1 437 5.08e-25 107
Msa0828570 MtrunA17_Chr4g0006541 50.000 78 39 0 195 272 7 84 2.78e-22 91.3
Msa0828570 MtrunA17_Chr7g0264221 56.977 86 35 2 381 465 13 97 6.81e-21 87.8
Msa0828570 MtrunA17_Chr4g0044051 22.874 494 296 14 2 465 3 441 1.54e-20 94.0
Msa0828570 MtrunA17_Chr2g0281631 49.153 59 30 0 29 87 44 102 1.97e-14 69.7
Msa0828570 MtrunA17_Chr1g0171851 58.333 48 19 1 31 77 2 49 5.70e-12 60.5
Msa0828570 MtrunA17_Chr7g0229641 64.103 39 14 0 177 215 52 90 2.33e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828570 AT1G28110.1 57.768 457 146 3 29 466 30 458 0.0 551
Msa0828570 AT1G28110.2 57.768 457 146 3 29 466 30 458 0.0 551
Msa0828570 AT2G33530.1 56.182 461 153 5 27 466 30 462 0.0 535
Msa0828570 AT1G43780.1 43.441 465 206 11 29 466 36 470 1.61e-120 361
Msa0828570 AT5G42230.1 40.333 481 233 7 11 466 9 460 1.07e-119 358
Msa0828570 AT5G42230.2 40.333 481 233 7 11 466 9 460 1.07e-119 358
Msa0828570 AT2G12480.3 40.862 487 224 9 10 467 7 458 1.82e-119 358
Msa0828570 AT5G42240.1 42.094 468 215 9 25 466 27 464 2.37e-119 358
Msa0828570 AT2G12480.4 40.000 485 207 9 10 467 7 434 3.19e-113 341
Msa0828570 AT2G12480.1 39.381 485 208 9 10 467 7 432 3.04e-111 336
Msa0828570 AT2G12480.2 39.300 486 208 10 10 467 7 433 1.73e-109 331
Msa0828570 AT2G35770.1 36.680 488 238 11 8 467 15 459 1.45e-97 301
Msa0828570 AT2G24010.1 37.768 466 223 10 27 466 27 451 7.00e-96 297
Msa0828570 AT2G24010.2 38.197 466 236 11 27 466 27 466 1.94e-95 296
Msa0828570 AT4G30610.1 35.984 503 243 13 2 466 1 462 2.02e-94 293
Msa0828570 AT3G02110.1 37.449 486 226 13 19 466 26 471 7.31e-94 292
Msa0828570 AT2G24000.1 36.134 476 225 13 27 465 27 460 1.69e-93 291
Msa0828570 AT5G23210.1 37.298 496 211 14 27 468 48 497 6.92e-93 290
Msa0828570 AT4G15100.1 36.983 484 224 12 24 465 36 480 7.81e-93 290
Msa0828570 AT1G61130.1 36.821 497 242 14 2 466 4 460 2.79e-92 288
Msa0828570 AT1G11080.1 36.570 484 222 11 27 466 47 489 2.82e-91 286
Msa0828570 AT1G11080.2 36.570 484 222 11 27 466 47 489 3.00e-91 286
Msa0828570 AT3G07990.1 36.910 466 226 13 29 466 32 457 1.01e-90 283
Msa0828570 AT2G35780.1 36.481 466 230 12 27 466 26 451 1.12e-90 283
Msa0828570 AT3G63470.1 38.126 459 222 12 29 466 80 497 6.92e-90 283
Msa0828570 AT2G24010.3 36.140 487 234 12 31 466 2 462 5.29e-89 279
Msa0828570 AT2G05850.1 34.820 471 236 12 24 466 57 484 1.32e-87 276
Msa0828570 AT5G08260.1 35.366 492 235 12 18 467 27 477 2.94e-87 275
Msa0828570 AT4G30810.1 36.152 473 227 13 27 467 34 463 1.09e-86 274
Msa0828570 AT3G17180.1 35.124 484 225 13 29 467 37 476 1.26e-85 271
Msa0828570 AT3G52010.1 35.073 479 239 14 16 466 50 484 9.56e-82 261
Msa0828570 AT5G23210.3 36.303 449 187 13 27 421 48 451 3.67e-78 251
Msa0828570 AT3G52000.1 35.032 471 234 15 22 466 55 479 2.63e-77 249
Msa0828570 AT5G23210.5 37.143 420 192 13 103 468 1 402 4.70e-74 239
Msa0828570 AT3G52020.1 34.615 468 233 13 27 466 76 498 1.47e-73 240
Msa0828570 AT3G17180.2 34.234 444 203 13 29 427 37 436 5.80e-72 234
Msa0828570 AT5G23210.2 36.893 412 188 13 111 468 8 401 2.80e-71 231
Msa0828570 AT2G24000.2 32.174 460 202 13 27 465 27 397 1.10e-70 230
Msa0828570 AT2G24010.4 35.638 376 195 9 31 380 2 356 2.77e-65 214
Msa0828570 AT4G12910.1 32.030 537 233 19 9 465 13 497 1.28e-64 217
Msa0828570 AT3G25420.1 33.265 490 222 18 43 465 43 494 3.65e-60 205
Msa0828570 AT5G23210.4 35.616 365 164 12 111 421 8 355 9.06e-57 192
Msa0828570 AT4G12910.2 31.313 495 208 19 9 423 13 455 1.62e-52 184
Msa0828570 AT1G73300.1 28.132 455 238 14 42 465 45 441 1.03e-50 178
Msa0828570 AT1G73300.2 28.132 455 238 14 42 465 45 441 1.03e-50 178
Msa0828570 AT5G36180.1 27.623 467 248 15 31 465 33 441 5.03e-49 174
Msa0828570 AT3G12203.3 28.603 458 241 14 37 465 16 416 1.03e-48 172
Msa0828570 AT3G12203.1 28.603 458 241 14 37 465 37 437 1.55e-48 172
Msa0828570 AT3G10450.1 28.758 459 230 16 42 465 41 437 4.00e-48 171
Msa0828570 AT1G73280.1 27.926 487 255 17 14 465 16 441 4.77e-48 171
Msa0828570 AT2G22980.1 26.889 450 246 14 42 465 38 430 5.12e-48 171
Msa0828570 AT2G22990.1 26.770 452 250 11 42 465 35 433 1.30e-47 170
Msa0828570 AT3G10450.2 28.698 453 226 16 48 465 4 394 3.39e-47 168
Msa0828570 AT2G23000.1 27.468 466 254 17 31 465 25 437 8.28e-47 168
Msa0828570 AT2G23000.2 27.468 466 254 17 31 465 25 437 8.28e-47 168
Msa0828570 AT1G73270.2 26.160 474 246 14 31 465 33 441 4.19e-46 166
Msa0828570 AT1G73270.1 26.160 474 246 14 31 465 33 441 5.88e-46 166
Msa0828570 AT1G33540.1 27.660 470 248 17 42 465 41 464 8.79e-46 166
Msa0828570 AT1G33540.2 27.430 463 246 16 48 465 4 421 7.74e-45 162
Msa0828570 AT2G22920.2 27.837 467 226 17 42 465 37 435 8.43e-45 162
Msa0828570 AT3G12240.1 29.654 462 222 19 42 465 40 436 1.07e-44 162
Msa0828570 AT5G22980.1 29.847 459 225 19 42 463 96 494 1.11e-44 164
Msa0828570 AT3G12203.2 28.211 436 227 14 59 465 1 379 2.14e-44 160
Msa0828570 AT3G12230.1 29.039 458 230 19 42 465 39 435 3.03e-44 161
Msa0828570 AT1G73290.1 26.022 465 233 15 42 465 44 438 8.06e-44 160
Msa0828570 AT2G22980.2 27.059 425 228 13 42 440 38 406 1.07e-43 159
Msa0828570 AT1G73310.1 26.490 453 248 12 42 465 45 441 1.47e-43 159
Msa0828570 AT2G22980.4 26.790 433 235 13 42 448 38 414 1.61e-43 159
Msa0828570 AT3G10450.4 28.802 434 213 15 42 440 41 413 1.88e-43 158
Msa0828570 AT3G10410.1 29.759 457 220 20 44 461 99 493 1.24e-42 158
Msa0828570 AT3G10450.3 28.738 428 209 15 48 440 4 370 1.91e-42 154
Msa0828570 AT3G45010.1 28.602 465 234 19 42 467 99 504 2.51e-42 157
Msa0828570 AT2G22990.4 26.995 426 231 10 42 439 35 408 2.83e-42 155
Msa0828570 AT2G22990.3 26.932 427 232 10 42 440 35 409 2.94e-42 156
Msa0828570 AT3G12220.1 28.850 461 227 19 42 465 39 435 3.35e-42 155
Msa0828570 AT2G22970.1 26.981 467 228 16 42 465 37 433 4.81e-42 155
Msa0828570 AT3G12220.2 28.791 455 223 18 48 465 15 405 3.41e-41 152
Msa0828570 AT2G23010.1 25.926 459 247 15 42 465 37 437 5.30e-41 152
Msa0828570 AT2G22990.5 25.885 452 245 12 42 465 35 424 7.30e-41 151
Msa0828570 AT2G23010.2 25.708 459 248 15 42 465 37 437 2.33e-40 150
Msa0828570 AT5G09640.1 25.203 492 287 17 15 465 14 465 1.20e-39 149
Msa0828570 AT2G22970.4 27.376 442 209 16 42 440 37 409 2.73e-37 141
Msa0828570 AT2G22970.3 27.438 441 208 16 42 439 37 408 8.79e-37 140
Msa0828570 AT3G56540.1 43.548 186 58 4 27 194 76 232 1.48e-36 135
Msa0828570 AT5G36180.5 27.528 356 205 11 134 465 13 339 5.01e-36 136
Msa0828570 AT5G36180.3 27.528 356 205 11 134 465 13 339 5.01e-36 136
Msa0828570 AT1G73310.2 26.442 416 222 12 42 428 45 405 8.66e-36 137
Msa0828570 AT2G22920.1 27.934 426 197 16 42 424 37 395 1.24e-34 134
Msa0828570 AT1G73280.4 27.855 359 200 13 134 465 13 339 1.32e-34 132
Msa0828570 AT1G73290.3 25.708 424 205 14 42 424 44 398 7.02e-34 132
Msa0828570 AT2G22990.6 25.948 343 209 8 144 465 1 319 6.00e-32 124
Msa0828570 AT5G36180.2 27.410 332 189 10 133 440 12 315 1.60e-31 123
Msa0828570 AT2G22990.2 25.656 343 210 8 144 465 1 319 2.67e-31 123
Msa0828570 AT1G73280.3 27.246 345 194 13 147 465 1 314 1.49e-30 120
Msa0828570 AT1G73280.2 26.933 375 189 12 14 355 16 338 1.94e-29 119
Msa0828570 AT1G73290.2 30.417 240 105 7 42 251 44 251 6.42e-29 116
Msa0828570 AT2G22980.3 27.628 333 168 11 42 349 38 322 7.37e-29 117
Msa0828570 AT2G22980.5 26.266 316 187 10 144 440 1 289 1.21e-27 112
Msa0828570 AT2G22920.4 32.068 237 105 7 42 251 37 244 7.39e-26 107
Msa0828570 AT3G12220.3 31.325 249 110 8 42 258 39 258 1.27e-25 108
Msa0828570 AT3G12220.3 31.250 144 86 6 325 465 250 383 3.20e-11 65.5
Msa0828570 AT5G36180.4 27.070 314 177 10 134 423 13 298 1.41e-25 107
Msa0828570 AT1G73310.3 26.101 318 187 9 133 428 12 303 6.82e-24 102
Msa0828570 AT2G22970.2 30.992 242 100 9 42 251 37 243 1.24e-23 101
Msa0828570 AT2G22920.3 26.280 293 156 11 194 465 3 256 1.24e-21 94.4
Msa0828570 AT1G15000.1 24.138 464 256 17 35 465 26 426 4.25e-21 95.9
Msa0828570 AT2G22960.1 28.369 141 94 3 325 465 51 184 7.23e-16 76.3

Find 103 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTAGTGCTTTGGTTAAA+TGG 0.193819 5_4:-1300047 Msa0828570:CDS
TGTTGGTGGTTGTTTGTTAA+TGG 0.216517 5_4:-1299696 Msa0828570:CDS
TATCTTATCAACTTCTAAAA+AGG 0.217716 5_4:+1300196 None:intergenic
CTTGAGATTGAAGTTGCTTT+TGG 0.218956 5_4:+1298355 None:intergenic
CTATTTGTGAACGTGGTTAT+TGG 0.235338 5_4:+1300432 None:intergenic
GATTCCAACCATATCTATTC+TGG 0.242541 5_4:-1296017 Msa0828570:CDS
GGTACACGGTCTTTAGTAAA+TGG 0.249224 5_4:-1295833 Msa0828570:CDS
TCCTATAGAACTTGGTTTAA+TGG 0.256672 5_4:-1295776 Msa0828570:CDS
GTGTAAGAGTTCTTGTATTC+AGG 0.263545 5_4:-1295976 Msa0828570:intron
GATCTCCCTGGTTGTGAAAA+TGG 0.279595 5_4:+1295077 None:intergenic
TATTGTTGAAATCCTACTTT+TGG 0.302177 5_4:+1300155 None:intergenic
TGTGTTCAAACCGAAATCTT+TGG 0.329816 5_4:+1295805 None:intergenic
CTCATGAGCTGCTCCTCTTA+TGG 0.337801 5_4:+1295103 None:intergenic
CCGTTTGCGCAAGAGTAAAT+AGG 0.338463 5_4:-1297805 Msa0828570:CDS
TATTTGTGAACGTGGTTATT+GGG 0.340088 5_4:+1300433 None:intergenic
AAACATTCACATATTTGAAT+AGG 0.352371 5_4:-1297382 Msa0828570:CDS
AATGGATTAGCCAAAGATTT+CGG 0.353684 5_4:-1295815 Msa0828570:CDS
GGTTGTTCTTCTGTTGGAGC+TGG 0.354742 5_4:-1299427 Msa0828570:CDS
GCAGATAGGGAATCCTCTTC+TGG 0.355694 5_4:-1297966 Msa0828570:intron
TTCATATATCAAAGAATAGT+TGG 0.370578 5_4:+1295014 None:intergenic
GCTCTTCATGCTAAGCTTGT+AGG 0.375959 5_4:-1297344 Msa0828570:CDS
TTATCCTTTGCAACCATAAG+AGG 0.383989 5_4:-1295116 Msa0828570:CDS
GAAGAAGGAATATATAATAA+AGG 0.384440 5_4:+1300370 None:intergenic
CCATTTAACCAAAGCACTAC+TGG 0.385709 5_4:+1300047 None:intergenic
GCTGGATGGACACAAGTATA+TGG 0.392487 5_4:-1295146 Msa0828570:CDS
TGAAGGTTATTTAATGAAGA+AGG 0.394277 5_4:+1300355 None:intergenic
AACAATGAGTTGTGCAAGTT+GGG 0.394486 5_4:+1298382 None:intergenic
CTTCCAAGCCAGTAGTGCTT+TGG 0.414675 5_4:-1300055 Msa0828570:CDS
TCCATTAAACCAAGTTCTAT+AGG 0.420844 5_4:+1295775 None:intergenic
CCTATTTACTCTTGCGCAAA+CGG 0.423561 5_4:+1297805 None:intergenic
AACAATGAGTTCTTTATCAC+AGG 0.423884 5_4:-1298505 Msa0828570:CDS
GGCGGTGATGTTGGTGTTGG+TGG 0.424139 5_4:-1299710 Msa0828570:CDS
CACAAATAGTATTATACTAT+AGG 0.425541 5_4:-1300418 Msa0828570:five_prime_UTR
AGTAAATAGGCTAGTGTCAA+TGG 0.433325 5_4:-1297792 Msa0828570:CDS
TTGTTTGTTAATGGTGTTGA+AGG 0.434030 5_4:-1299687 Msa0828570:CDS
GGGCCTGGTTGTTCTTCTGT+TGG 0.435564 5_4:-1299433 Msa0828570:CDS
AGCATATGTGCTAACTCAAC+TGG 0.443526 5_4:-1297529 Msa0828570:intron
CTGGGAAAACTTGTTAAGTC+AGG 0.444625 5_4:-1295998 Msa0828570:CDS
CAACAGAGTCCTATAGAACT+TGG 0.450027 5_4:-1295784 Msa0828570:CDS
AGATCTGACTGAGAAGTTGT+TGG 0.456657 5_4:+1300296 None:intergenic
ACTCTAGAGCTGAGTATCTC+TGG 0.456915 5_4:-1297925 Msa0828570:CDS
CTCTTCATGCTAAGCTTGTA+GGG 0.458817 5_4:-1297343 Msa0828570:CDS
TTCACAACCAGGGAGATCAT+TGG 0.460300 5_4:-1295072 Msa0828570:CDS
ACCTGTCAAATCATCGTTCA+CGG 0.467446 5_4:+1299152 None:intergenic
TAACCAAAGCACTACTGGCT+TGG 0.472081 5_4:+1300052 None:intergenic
GACAACTCTAGGAAGTCAAC+AGG 0.473393 5_4:+1294793 None:intergenic
ATCACAGGGGAGAGCTATGC+AGG 0.475351 5_4:-1298490 Msa0828570:intron
GAGATCATTGGTGCTGCTAA+AGG 0.480114 5_4:-1295060 Msa0828570:CDS
GATTCAGTATTACCGTTGCT+TGG 0.480726 5_4:-1295854 Msa0828570:CDS
TCTAGGAAGTCAACAGGTAA+AGG 0.481012 5_4:+1294799 None:intergenic
ATGGTGTTGAAGGTAGGTCT+TGG 0.481502 5_4:-1299677 Msa0828570:intron
AGCACTACTGGCTTGGAAGC+TGG 0.484486 5_4:+1300059 None:intergenic
TTCCTAGAGTTGTCAAACCT+TGG 0.487319 5_4:-1294784 Msa0828570:three_prime_UTR
ATTGAAAATGTTATAGCTGC+TGG 0.493657 5_4:+1294726 None:intergenic
GCTGAGTATCTCTGGTCTCA+TGG 0.494343 5_4:-1297917 Msa0828570:CDS
TTGTTAATGGTGTTGAAGGT+AGG 0.494426 5_4:-1299683 Msa0828570:CDS
AAACTGTAGTGTATTCAGTC+TGG 0.496440 5_4:-1294977 Msa0828570:three_prime_UTR
AGAGAAGATAGATGTTTGTG+TGG 0.498648 5_4:-1297411 Msa0828570:CDS
AACTTGGTTTAATGGAAGAC+AGG 0.500267 5_4:-1295768 Msa0828570:intron
TTTAAATTAGGCGGTGATGT+TGG 0.500392 5_4:-1299719 Msa0828570:CDS
TTGGAATCACCTGCTGGTGT+TGG 0.505453 5_4:-1299210 Msa0828570:CDS
ATTCCAACCATATCTATTCT+GGG 0.506746 5_4:-1296016 Msa0828570:CDS
GAATGATTCATTAGTAGAGT+AGG 0.511936 5_4:+1299182 None:intergenic
GTAGGATTTCAACAATATGC+TGG 0.512842 5_4:-1300149 Msa0828570:CDS
CAAAAGCAACTTCAATCTCA+AGG 0.516615 5_4:-1298354 Msa0828570:CDS
GCTTTGGGATATGATTATGA+AGG 0.517158 5_4:+1300338 None:intergenic
TGAATGAGTCTGAGATATCA+TGG 0.519349 5_4:+1300268 None:intergenic
AGTGGCAAACATGCTGTACT+TGG 0.523894 5_4:-1299229 Msa0828570:CDS
TTTCCCAGAATAGATATGGT+TGG 0.524165 5_4:+1296013 None:intergenic
AGCAGCACCAATGATCTCCC+TGG 0.527781 5_4:+1295065 None:intergenic
TTACCTCAGCAGCCAAAAGT+AGG 0.529670 5_4:-1300167 Msa0828570:CDS
TTCCAAGGTTTGACAACTCT+AGG 0.535222 5_4:+1294782 None:intergenic
TAGGAGAAACCAACACCAGC+AGG 0.535980 5_4:+1299201 None:intergenic
TCCGTGAACGATGATTTGAC+AGG 0.542755 5_4:-1299153 Msa0828570:intron
TGCTCCTCTTATGGTTGCAA+AGG 0.542852 5_4:+1295112 None:intergenic
GAACAATGAGTTGTGCAAGT+TGG 0.548381 5_4:+1298381 None:intergenic
AGACATTTCTGAATATTCCA+AGG 0.548917 5_4:+1294767 None:intergenic
AGATGCTGCAGAAAATATGC+AGG 0.549748 5_4:+1294863 None:intergenic
CTGTACTTGGAATCACCTGC+TGG 0.558525 5_4:-1299216 Msa0828570:CDS
AATGATTACAGTTGGAACAA+AGG 0.561761 5_4:-1299352 Msa0828570:intron
TTAGGCGGTGATGTTGGTGT+TGG 0.569046 5_4:-1299713 Msa0828570:CDS
ACAATGAGTTCTTTATCACA+GGG 0.576910 5_4:-1298504 Msa0828570:CDS
ACCACATGGACCACTTGTAG+TGG 0.577155 5_4:-1297317 Msa0828570:CDS
TATTACCGTTGCTTGGTACA+CGG 0.578535 5_4:-1295847 Msa0828570:CDS
AAAACTTGTCTGTAGAGTCA+TGG 0.579830 5_4:-1300457 Msa0828570:five_prime_UTR
TAAAACTTACCCACTACAAG+TGG 0.584898 5_4:+1297307 None:intergenic
CATAAGAGGAGCAGCTCATG+AGG 0.586244 5_4:-1295102 Msa0828570:CDS
TCATGCCTGGTTTAGCAAGA+GGG 0.587235 5_4:-1297434 Msa0828570:intron
AAAAGCAACTTCAATCTCAA+GGG 0.591189 5_4:-1298353 Msa0828570:CDS
TCTGTGTTGAATTCCAGAAG+AGG 0.596221 5_4:+1297953 None:intergenic
ATGGAGTTGGCATTTCCTAG+TGG 0.600694 5_4:+1294952 None:intergenic
ATTAGAAGACAATATGCAAG+TGG 0.621696 5_4:-1297839 Msa0828570:CDS
AGCTTGTAGGGATCACCACA+TGG 0.629981 5_4:-1297331 Msa0828570:CDS
GTATTCAGTCTGGAACCACT+AGG 0.633895 5_4:-1294967 Msa0828570:three_prime_UTR
CCACATGGACCACTTGTAGT+GGG 0.641254 5_4:-1297316 Msa0828570:intron
TATAATACTATTTGTGAACG+TGG 0.653104 5_4:+1300425 None:intergenic
GCTCCAACAGAAGAACAACC+AGG 0.659750 5_4:+1299430 None:intergenic
CCCACTACAAGTGGTCCATG+TGG 0.665874 5_4:+1297316 None:intergenic
GTAGTGCTTTGGTTAAATGG+AGG 0.666465 5_4:-1300044 Msa0828570:intron
AAAGACCGTGTACCAAGCAA+CGG 0.670704 5_4:+1295842 None:intergenic
ACAATGAGTTGTGCAAGTTG+GGG 0.679051 5_4:+1298383 None:intergenic
AAATAGGCTAGTGTCAATGG+AGG 0.690398 5_4:-1297789 Msa0828570:intron
CAATGAGTTCTTTATCACAG+GGG 0.717844 5_4:-1298503 Msa0828570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGCTTTTTTTTTTTTAA+CGG + chr5_4:1295659-1295678 None:intergenic 10.0%
!! TAACAAAAATTAATTATGAA+TGG + chr5_4:1296288-1296307 None:intergenic 10.0%
!!! TTCATAATTAATTTTTGTTA+CGG - chr5_4:1296288-1296307 Msa0828570:intron 10.0%
!!! TGCAATTTTAATTTATTTAT+AGG + chr5_4:1296931-1296950 None:intergenic 10.0%
!!! TTTTTTAAAAAAAAAGAAGT+TGG - chr5_4:1297425-1297444 Msa0828570:intron 10.0%
!!! TTTTTAAAAAAAAAGAAGTT+GGG - chr5_4:1297426-1297445 Msa0828570:intron 10.0%
!!! TAAATCATACTAATTTTTTA+AGG - chr5_4:1298009-1298028 Msa0828570:intron 10.0%
!!! TTTAATTTTGTTAATTTCAT+TGG - chr5_4:1298085-1298104 Msa0828570:intron 10.0%
!! AAATTTAACAATGTAAATAA+AGG + chr5_4:1298892-1298911 None:intergenic 10.0%
!! TTTACATTGTTAAATTTATT+CGG - chr5_4:1298895-1298914 Msa0828570:intron 10.0%
!!! TTGATTAATTTTTTTTTTCA+AGG - chr5_4:1299015-1299034 Msa0828570:intron 10.0%
!! GATAAAAAAAATTAAGTTAT+TGG - chr5_4:1299635-1299654 Msa0828570:intron 10.0%
!! AAAAAAAAAGTTTAAATGAA+TGG - chr5_4:1299669-1299688 Msa0828570:intron 10.0%
!! AAAAACTGAATATTTAAATA+TGG + chr5_4:1299908-1299927 None:intergenic 10.0%
!!! TTAAATATTCAGTTTTTTAT+TGG - chr5_4:1299911-1299930 Msa0828570:intron 10.0%
!!! ATAATATTTTTTGTTACTGT+AGG - chr5_4:1294945-1294964 Msa0828570:three_prime_UTR 15.0%
!! GTTAAAAAAAAAAAAGCAAA+TGG - chr5_4:1295658-1295677 Msa0828570:intron 15.0%
!! TTATTAAAAATGATTACAGT+TGG - chr5_4:1295812-1295831 Msa0828570:CDS 15.0%
!!! CTTATTTTTCATTTCATTTT+TGG - chr5_4:1296136-1296155 Msa0828570:intron 15.0%
!!! ATTGATTACAAATGATTTTT+AGG - chr5_4:1296224-1296243 Msa0828570:intron 15.0%
!!! TATTTTGTTATGTTCTAATT+TGG - chr5_4:1296351-1296370 Msa0828570:intron 15.0%
!!! TATTAGTTCTATTTAATCTT+AGG + chr5_4:1296411-1296430 None:intergenic 15.0%
!! ATAAAGATGATATCTTAATA+TGG + chr5_4:1296560-1296579 None:intergenic 15.0%
!!! AATGAATAGTATTTTCATTT+TGG - chr5_4:1296723-1296742 Msa0828570:intron 15.0%
!!! TTATAGAATAAGAAACATTT+TGG - chr5_4:1297144-1297163 Msa0828570:intron 15.0%
!!! ATTATTTTATGGAAATGAAT+GGG - chr5_4:1297919-1297938 Msa0828570:CDS 15.0%
!! ACTTTATGAATAAATTATTG+AGG - chr5_4:1298510-1298529 Msa0828570:CDS 15.0%
!! CTTTATGAATAAATTATTGA+GGG - chr5_4:1298511-1298530 Msa0828570:CDS 15.0%
!! TTCTGATTATTAGATAAATA+CGG - chr5_4:1298652-1298671 Msa0828570:intron 15.0%
!!! ACTATTCTATTTAATTTTGA+AGG + chr5_4:1298861-1298880 None:intergenic 15.0%
!! AAAAAATTAATCAACAAAGA+GGG + chr5_4:1299009-1299028 None:intergenic 15.0%
!! AAAAAAATTAATCAACAAAG+AGG + chr5_4:1299010-1299029 None:intergenic 15.0%
!! AATATGTGTAATTAATGTAT+TGG + chr5_4:1299823-1299842 None:intergenic 15.0%
!! AATCAAATATCAAAATAAGT+TGG + chr5_4:1299997-1300016 None:intergenic 15.0%
!!! ATTTTGATATTTGATTTTTC+AGG - chr5_4:1300001-1300020 Msa0828570:intron 15.0%
!! CACAAATAGTATTATACTAT+AGG - chr5_4:1294754-1294773 Msa0828570:three_prime_UTR 20.0%
!! GAAGAAGGAATATATAATAA+AGG + chr5_4:1294805-1294824 None:intergenic 20.0%
!!! TATCTTATCAACTTCTAAAA+AGG + chr5_4:1294979-1294998 None:intergenic 20.0%
!!! ATATAGATTAAAAGTGTATC+TGG + chr5_4:1295306-1295325 None:intergenic 20.0%
!! TATATTATAAGTGCTACATT+TGG - chr5_4:1295321-1295340 Msa0828570:intron 20.0%
!!! GCAAATTTTATTGAAAAACT+CGG + chr5_4:1295637-1295656 None:intergenic 20.0%
!!! GGTTAAACTTTTTATGTTAT+AGG - chr5_4:1295679-1295698 Msa0828570:intron 20.0%
!!! TAAGATGTTTTGTATTTTGA+AGG - chr5_4:1295718-1295737 Msa0828570:intron 20.0%
!!! AAGATGTTTTGTATTTTGAA+GGG - chr5_4:1295719-1295738 Msa0828570:intron 20.0%
!!! TTAATAAGACCATTTTTAGT+TGG + chr5_4:1295799-1295818 None:intergenic 20.0%
!! AATGCAAAATTGATTACAAA+GGG - chr5_4:1296161-1296180 Msa0828570:intron 20.0%
!!! TAATTATGAATGGATTGATT+TGG + chr5_4:1296278-1296297 None:intergenic 20.0%
!! AAATAAACTTAGTGTATGTT+TGG + chr5_4:1296319-1296338 None:intergenic 20.0%
!!! AACATACACTAAGTTTATTT+TGG - chr5_4:1296319-1296338 Msa0828570:intron 20.0%
!!! ACATACACTAAGTTTATTTT+GGG - chr5_4:1296320-1296339 Msa0828570:intron 20.0%
!!! TAAACCAAACTAGATTTTAA+AGG - chr5_4:1296475-1296494 Msa0828570:intron 20.0%
!!! TTTTCCTTTAAAATCTAGTT+TGG + chr5_4:1296482-1296501 None:intergenic 20.0%
!!! ATCTTGTTTTTTTACAACAT+TGG - chr5_4:1296620-1296639 Msa0828570:intron 20.0%
!! ATATCAACAAAGTAATAAGT+CGG + chr5_4:1297185-1297204 None:intergenic 20.0%
!!! ATATTATATAGTTCGTTTTG+AGG - chr5_4:1297486-1297505 Msa0828570:intron 20.0%
!!! TATTATATAGTTCGTTTTGA+GGG - chr5_4:1297487-1297506 Msa0828570:intron 20.0%
!! AAACATTCACATATTTGAAT+AGG - chr5_4:1297790-1297809 Msa0828570:CDS 20.0%
!! TTATGATTCTTAAAATCACT+TGG - chr5_4:1297895-1297914 Msa0828570:CDS 20.0%
!! TATGATTCTTAAAATCACTT+GGG - chr5_4:1297896-1297915 Msa0828570:CDS 20.0%
!!! GATTATTTTATGGAAATGAA+TGG - chr5_4:1297918-1297937 Msa0828570:CDS 20.0%
!! CTTGAAATCAAAGAATAATT+TGG + chr5_4:1298111-1298130 None:intergenic 20.0%
!!! CAAATTATTCTTTGATTTCA+AGG - chr5_4:1298109-1298128 Msa0828570:intron 20.0%
!!! TTTTGTTTCTAGATTTCTAT+CGG + chr5_4:1298376-1298395 None:intergenic 20.0%
!! AAATCTAGAAACAAAAAATG+CGG - chr5_4:1298380-1298399 Msa0828570:CDS 20.0%
!! ATTAATTACTAGAATATCAG+CGG + chr5_4:1298563-1298582 None:intergenic 20.0%
!! TCTAGTAATTAATCTTCATT+AGG - chr5_4:1298570-1298589 Msa0828570:intron 20.0%
!! CTAGTAATTAATCTTCATTA+GGG - chr5_4:1298571-1298590 Msa0828570:intron 20.0%
!! TCAGAAAAAGAAAATTTGAA+AGG + chr5_4:1298638-1298657 None:intergenic 20.0%
!! ATTTCATCAGTAACATTATT+TGG - chr5_4:1298824-1298843 Msa0828570:intron 20.0%
!! TTTCATCAGTAACATTATTT+GGG - chr5_4:1298825-1298844 Msa0828570:intron 20.0%
!!! TTTTTTTTGAAGAGACAATA+TGG - chr5_4:1298951-1298970 Msa0828570:intron 20.0%
!! TAATTGAAATGAGTTAAGTT+TGG - chr5_4:1299049-1299068 Msa0828570:intron 20.0%
!! TAACTAATATGTATCAATGT+CGG - chr5_4:1299458-1299477 Msa0828570:intron 20.0%
!! CATAGAATGTTACTATTTAA+AGG - chr5_4:1299845-1299864 Msa0828570:intron 20.0%
!!! TCAAAATAAGTTGGTTTTAA+AGG + chr5_4:1299988-1300007 None:intergenic 20.0%
!! TTCATATATCAAAGAATAGT+TGG + chr5_4:1300161-1300180 None:intergenic 20.0%
! TATAATACTATTTGTGAACG+TGG + chr5_4:1294750-1294769 None:intergenic 25.0%
! TGAAGGTTATTTAATGAAGA+AGG + chr5_4:1294820-1294839 None:intergenic 25.0%
!! TATTGTTGAAATCCTACTTT+TGG + chr5_4:1295020-1295039 None:intergenic 25.0%
!!! TTACAACTGGGTTTTAAATT+AGG - chr5_4:1295441-1295460 Msa0828570:intron 25.0%
! GAATGCAAAATTGATTACAA+AGG - chr5_4:1296160-1296179 Msa0828570:intron 25.0%
! ATGCAAAATTGATTACAAAG+GGG - chr5_4:1296162-1296181 Msa0828570:intron 25.0%
!!! CATACACTAAGTTTATTTTG+GGG - chr5_4:1296321-1296340 Msa0828570:intron 25.0%
!! TATTGAGTAAACAAGCATTT+TGG - chr5_4:1296876-1296895 Msa0828570:intron 25.0%
! ACAAATAAAATACACAAGCA+GGG + chr5_4:1296961-1296980 None:intergenic 25.0%
!!! TATTTTTGTGAAGGAATCAT+AGG + chr5_4:1297298-1297317 None:intergenic 25.0%
!!! AAAGTTGCATATTTTTGTGA+AGG + chr5_4:1297307-1297326 None:intergenic 25.0%
! TAAAAAAAAAGAAGTTGGGA+AGG - chr5_4:1297430-1297449 Msa0828570:intron 25.0%
!!! ATTATATAGTTCGTTTTGAG+GGG - chr5_4:1297488-1297507 Msa0828570:intron 25.0%
!! GTTTAGTTTAATAGCTTCAA+TGG + chr5_4:1297527-1297546 None:intergenic 25.0%
! AAAGAGAATCTAGATTGAAA+AGG + chr5_4:1297687-1297706 None:intergenic 25.0%
!!! AATCACTTGGGATTATTTTA+TGG - chr5_4:1297908-1297927 Msa0828570:CDS 25.0%
!!! TAACCTATCTTTTGGTTTAT+CGG + chr5_4:1298160-1298179 None:intergenic 25.0%
! GAATAACAATCTAAGCTAAA+AGG - chr5_4:1298327-1298346 Msa0828570:intron 25.0%
!!! TTTGTTTCTAGATTTCTATC+GGG + chr5_4:1298375-1298394 None:intergenic 25.0%
! ATAAATTATTGAGGGAAACT+TGG - chr5_4:1298519-1298538 Msa0828570:intron 25.0%
! TAAATTATTGAGGGAAACTT+GGG - chr5_4:1298520-1298539 Msa0828570:intron 25.0%
! TATAATTCCTTCTGTAAGTT+CGG - chr5_4:1298727-1298746 Msa0828570:intron 25.0%
! AAAATCCTTAAAGAATGTCT+CGG + chr5_4:1299758-1299777 None:intergenic 25.0%
!!! AAAGGTATTAATGAGTGTTT+CGG - chr5_4:1299863-1299882 Msa0828570:intron 25.0%
!! TCAAAGTTATCTTTTGTCTA+TGG + chr5_4:1300242-1300261 None:intergenic 25.0%
TATTTGTGAACGTGGTTATT+GGG + chr5_4:1294742-1294761 None:intergenic 30.0%
!!! GTTGCTTTTTATTCTGCTTT+GGG + chr5_4:1294852-1294871 None:intergenic 30.0%
!!! TGTTGCTTTTTATTCTGCTT+TGG + chr5_4:1294853-1294872 None:intergenic 30.0%
CTATGTATCAGTGTCATATT+CGG + chr5_4:1295191-1295210 None:intergenic 30.0%
ATTATAAGTGCTACATTTGG+AGG - chr5_4:1295324-1295343 Msa0828570:intron 30.0%
TTATAAGTGCTACATTTGGA+GGG - chr5_4:1295325-1295344 Msa0828570:intron 30.0%
!! TTTTTAGGGGTTTTTTGGAT+GGG - chr5_4:1295372-1295391 Msa0828570:intron 30.0%
!! TTCAGTAGTTGTTTTACAAC+TGG - chr5_4:1295428-1295447 Msa0828570:intron 30.0%
!! TCAGTAGTTGTTTTACAACT+GGG - chr5_4:1295429-1295448 Msa0828570:intron 30.0%
! TTGTTTGTTAATGGTGTTGA+AGG - chr5_4:1295485-1295504 Msa0828570:intron 30.0%
ATCCAGAAATTACAAGACAA+AGG + chr5_4:1295585-1295604 None:intergenic 30.0%
! TCTTGTAATTTCTGGATGAT+CGG - chr5_4:1295588-1295607 Msa0828570:intron 30.0%
!!! CCATTTTTAGTTGGTTTGAA+TGG + chr5_4:1295790-1295809 None:intergenic 30.0%
CCATTCAAACCAACTAAAAA+TGG - chr5_4:1295787-1295806 Msa0828570:CDS 30.0%
AATGATTACAGTTGGAACAA+AGG - chr5_4:1295820-1295839 Msa0828570:CDS 30.0%
TAGAGTAATTAAGCACGAAA+GGG + chr5_4:1295896-1295915 None:intergenic 30.0%
TTAGAGTAATTAAGCACGAA+AGG + chr5_4:1295897-1295916 None:intergenic 30.0%
GAATGATTCATTAGTAGAGT+AGG + chr5_4:1295993-1296012 None:intergenic 30.0%
CAAAATAGCATGTGAATGAA+TGG - chr5_4:1296064-1296083 Msa0828570:intron 30.0%
AACAATGAGTTCTTTATCAC+AGG - chr5_4:1296667-1296686 Msa0828570:intron 30.0%
ACAATGAGTTCTTTATCACA+GGG - chr5_4:1296668-1296687 Msa0828570:intron 30.0%
ATACTATTCATTTAGCACGA+AGG + chr5_4:1296715-1296734 None:intergenic 30.0%
AAAAGCAACTTCAATCTCAA+GGG - chr5_4:1296819-1296838 Msa0828570:intron 30.0%
GACAAATAAAATACACAAGC+AGG + chr5_4:1296962-1296981 None:intergenic 30.0%
! GTCGTCAATTAGTAATTTTG+TGG + chr5_4:1297053-1297072 None:intergenic 30.0%
ACTTTGTTGATATTGCAGAT+AGG - chr5_4:1297192-1297211 Msa0828570:intron 30.0%
CTTTGTTGATATTGCAGATA+GGG - chr5_4:1297193-1297212 Msa0828570:intron 30.0%
ATTAGAAGACAATATGCAAG+TGG - chr5_4:1297333-1297352 Msa0828570:CDS 30.0%
AGTTTAATAGCTTCAATGGA+CGG + chr5_4:1297523-1297542 None:intergenic 30.0%
TATCTACTAATCTGTCCATA+AGG + chr5_4:1297569-1297588 None:intergenic 30.0%
GAATCTAGATTGAAAAGGAA+TGG + chr5_4:1297682-1297701 None:intergenic 30.0%
GATAAACCAAAAGATAGGTT+AGG - chr5_4:1298159-1298178 Msa0828570:intron 30.0%
! TTTATGCCTAACCTATCTTT+TGG + chr5_4:1298168-1298187 None:intergenic 30.0%
!!! TGCTGTTTCTTTGTCTTTTT+GGG + chr5_4:1298301-1298320 None:intergenic 30.0%
!!! TTGCTGTTTCTTTGTCTTTT+TGG + chr5_4:1298302-1298321 None:intergenic 30.0%
ATCTAAGCTAAAAGGTAAAC+AGG - chr5_4:1298335-1298354 Msa0828570:intron 30.0%
ATTCCAACCATATCTATTCT+GGG - chr5_4:1299156-1299175 Msa0828570:CDS 30.0%
! AAGTTTTCCCAGAATAGATA+TGG + chr5_4:1299166-1299185 None:intergenic 30.0%
GTATATGACAAAGTAACCAA+AGG + chr5_4:1299256-1299275 None:intergenic 30.0%
!! AATGGATTAGCCAAAGATTT+CGG - chr5_4:1299357-1299376 Msa0828570:CDS 30.0%
TCCTATAGAACTTGGTTTAA+TGG - chr5_4:1299396-1299415 Msa0828570:CDS 30.0%
TCCATTAAACCAAGTTCTAT+AGG + chr5_4:1299400-1299419 None:intergenic 30.0%
GTTTAACATACCGAAGATAA+TGG + chr5_4:1299532-1299551 None:intergenic 30.0%
GTTTCACTTACTATACTCAT+CGG - chr5_4:1299563-1299582 Msa0828570:intron 30.0%
! CAAGTTCTTTTCTAGATGAA+AGG + chr5_4:1299723-1299742 None:intergenic 30.0%
AAATCCTTAAAGAATGTCTC+GGG + chr5_4:1299757-1299776 None:intergenic 30.0%
!!! TATTTGATTTTTCAGGTAGC+TGG - chr5_4:1300008-1300027 Msa0828570:intron 30.0%
! TTATCTTTTGTCTATGGAGT+TGG + chr5_4:1300236-1300255 None:intergenic 30.0%
AGACATTTCTGAATATTCCA+AGG + chr5_4:1300408-1300427 None:intergenic 30.0%
ATTGAAAATGTTATAGCTGC+TGG + chr5_4:1300449-1300468 None:intergenic 30.0%
AAAACTTGTCTGTAGAGTCA+TGG - chr5_4:1294715-1294734 Msa0828570:three_prime_UTR 35.0%
CTATTTGTGAACGTGGTTAT+TGG + chr5_4:1294743-1294762 None:intergenic 35.0%
!! GCTTTGGGATATGATTATGA+AGG + chr5_4:1294837-1294856 None:intergenic 35.0%
! TGAATGAGTCTGAGATATCA+TGG + chr5_4:1294907-1294926 None:intergenic 35.0%
GTAGGATTTCAACAATATGC+TGG - chr5_4:1295023-1295042 Msa0828570:CDS 35.0%
!! GTTTTTAGGGGTTTTTTGGA+TGG - chr5_4:1295371-1295390 Msa0828570:intron 35.0%
!!! CAACTGGGTTTTAAATTAGG+CGG - chr5_4:1295444-1295463 Msa0828570:intron 35.0%
TTTAAATTAGGCGGTGATGT+TGG - chr5_4:1295453-1295472 Msa0828570:intron 35.0%
!! TGTTGGTGGTTGTTTGTTAA+TGG - chr5_4:1295476-1295495 Msa0828570:intron 35.0%
! TTGTTAATGGTGTTGAAGGT+AGG - chr5_4:1295489-1295508 Msa0828570:intron 35.0%
!! GTCTATTTGGGGTTTTCTTT+TGG - chr5_4:1295538-1295557 Msa0828570:intron 35.0%
GAATGAATGGTATCACAAGA+TGG - chr5_4:1296077-1296096 Msa0828570:intron 35.0%
!! CATTGGTTCACTAAATTCTC+AGG - chr5_4:1296637-1296656 Msa0828570:intron 35.0%
CAATGAGTTCTTTATCACAG+GGG - chr5_4:1296669-1296688 Msa0828570:intron 35.0%
GATTAATTCATGCTTGTGTC+AGG - chr5_4:1296756-1296775 Msa0828570:intron 35.0%
AACAATGAGTTGTGCAAGTT+GGG + chr5_4:1296793-1296812 None:intergenic 35.0%
!! CTTGAGATTGAAGTTGCTTT+TGG + chr5_4:1296820-1296839 None:intergenic 35.0%
CAAAAGCAACTTCAATCTCA+AGG - chr5_4:1296818-1296837 Msa0828570:intron 35.0%
AGTAAATAGGCTAGTGTCAA+TGG - chr5_4:1297380-1297399 Msa0828570:CDS 35.0%
AAACTAAACTCTTACCTCTG+AGG - chr5_4:1297538-1297557 Msa0828570:CDS 35.0%
AGAGAAGATAGATGTTTGTG+TGG - chr5_4:1297761-1297780 Msa0828570:intron 35.0%
TAAAACTTACCCACTACAAG+TGG + chr5_4:1297868-1297887 None:intergenic 35.0%
AGTTACCTGAGACAATTTCA+GGG + chr5_4:1298049-1298068 None:intergenic 35.0%
TAGTTACCTGAGACAATTTC+AGG + chr5_4:1298050-1298069 None:intergenic 35.0%
ATTGTCTCAGGTAACTAACA+TGG - chr5_4:1298053-1298072 Msa0828570:intron 35.0%
CTTCCGATAAACCAAAAGAT+AGG - chr5_4:1298154-1298173 Msa0828570:intron 35.0%
ATATATTGAGCACGTGATAG+AGG + chr5_4:1298211-1298230 None:intergenic 35.0%
TGTATACATACACACACAAG+AGG - chr5_4:1298256-1298275 Msa0828570:intron 35.0%
!! TGTTTCTTTGTCTTTTTGGG+GGG + chr5_4:1298298-1298317 None:intergenic 35.0%
!! CTGTTTCTTTGTCTTTTTGG+GGG + chr5_4:1298299-1298318 None:intergenic 35.0%
!!! GCTGTTTCTTTGTCTTTTTG+GGG + chr5_4:1298300-1298319 None:intergenic 35.0%
GATTTCTATCGGGATACAAA+TGG + chr5_4:1298365-1298384 None:intergenic 35.0%
TACTAGAATATCAGCGGTAT+AGG + chr5_4:1298557-1298576 None:intergenic 35.0%
TAATCTTCATTAGGGAGAGT+AGG - chr5_4:1298579-1298598 Msa0828570:intron 35.0%
AATCTTCATTAGGGAGAGTA+GGG - chr5_4:1298580-1298599 Msa0828570:intron 35.0%
!! TTCCAACACTTGTTGATTCA+AGG + chr5_4:1298703-1298722 None:intergenic 35.0%
! TCATCAATCGATTCTGACTT+TGG + chr5_4:1298786-1298805 None:intergenic 35.0%
TATTCGGAAGCAAGCAAATA+TGG - chr5_4:1298911-1298930 Msa0828570:intron 35.0%
ACTCTGTCACATAAAGGAAA+TGG + chr5_4:1299108-1299127 None:intergenic 35.0%
TTGAGAACTCTGTCACATAA+AGG + chr5_4:1299114-1299133 None:intergenic 35.0%
GATTCCAACCATATCTATTC+TGG - chr5_4:1299155-1299174 Msa0828570:CDS 35.0%
TTTCCCAGAATAGATATGGT+TGG + chr5_4:1299162-1299181 None:intergenic 35.0%
GTGTAAGAGTTCTTGTATTC+AGG - chr5_4:1299196-1299215 Msa0828570:CDS 35.0%
TGACATTACAATCTCACCTT+TGG - chr5_4:1299237-1299256 Msa0828570:intron 35.0%
! TAAGATGTTTTTCTCTGCAG+TGG - chr5_4:1299288-1299307 Msa0828570:intron 35.0%
TGTGTTCAAACCGAAATCTT+TGG + chr5_4:1299370-1299389 None:intergenic 35.0%
AACTTGGTTTAATGGAAGAC+AGG - chr5_4:1299404-1299423 Msa0828570:CDS 35.0%
AGTGTCTATGCCATTATCTT+CGG - chr5_4:1299519-1299538 Msa0828570:intron 35.0%
TTATCCTTTGCAACCATAAG+AGG - chr5_4:1300056-1300075 Msa0828570:CDS 35.0%
AAACTGTAGTGTATTCAGTC+TGG - chr5_4:1300195-1300214 Msa0828570:CDS 35.0%
AGATCTGACTGAGAAGTTGT+TGG + chr5_4:1294879-1294898 None:intergenic 40.0%
! CCATTTAACCAAAGCACTAC+TGG + chr5_4:1295128-1295147 None:intergenic 40.0%
CCAGTAGTGCTTTGGTTAAA+TGG - chr5_4:1295125-1295144 Msa0828570:CDS 40.0%
GTAGTGCTTTGGTTAAATGG+AGG - chr5_4:1295128-1295147 Msa0828570:CDS 40.0%
TAACCATTATCCGCATGTGT+TGG - chr5_4:1295249-1295268 Msa0828570:intron 40.0%
ATCTGGTGTCTGATACATGT+CGG + chr5_4:1295289-1295308 None:intergenic 40.0%
! TTGGAGGGATGGTTTTTCTT+TGG - chr5_4:1295340-1295359 Msa0828570:intron 40.0%
! TGGAGGGATGGTTTTTCTTT+GGG - chr5_4:1295341-1295360 Msa0828570:intron 40.0%
!! GGTGGTTTTTAGGGGTTTTT+TGG - chr5_4:1295367-1295386 Msa0828570:intron 40.0%
!!! TGGCGTTTTGGTGTCTATTT+GGG - chr5_4:1295526-1295545 Msa0828570:intron 40.0%
!! AAGACAAAGGCGTCGTATAT+AGG + chr5_4:1295572-1295591 None:intergenic 40.0%
CGCCTTTGTCTTGTAATTTC+TGG - chr5_4:1295580-1295599 Msa0828570:intron 40.0%
!! GTTTTGTATTTTGAAGGGCC+TGG - chr5_4:1295724-1295743 Msa0828570:intron 40.0%
CAACAAAATCGCGTAGTTGT+TGG + chr5_4:1295850-1295869 None:intergenic 40.0%
!! CTGTTTCCTACTTGTTGTAG+TGG - chr5_4:1295925-1295944 Msa0828570:intron 40.0%
TGTTTGCCACTACAACAAGT+AGG + chr5_4:1295934-1295953 None:intergenic 40.0%
ACCTGTCAAATCATCGTTCA+CGG + chr5_4:1296023-1296042 None:intergenic 40.0%
! TAGCTCTATGTTATGCAGCA+AGG - chr5_4:1296593-1296612 Msa0828570:intron 40.0%
AGCTCTATGTTATGCAGCAA+GGG - chr5_4:1296594-1296613 Msa0828570:intron 40.0%
ACAATGAGTTGTGCAAGTTG+GGG + chr5_4:1296792-1296811 None:intergenic 40.0%
GAACAATGAGTTGTGCAAGT+TGG + chr5_4:1296794-1296813 None:intergenic 40.0%
ATCAAAGACGTACACATTCG+AGG + chr5_4:1296993-1297012 None:intergenic 40.0%
TCTGTGTTGAATTCCAGAAG+AGG + chr5_4:1297222-1297241 None:intergenic 40.0%
CCTATTTACTCTTGCGCAAA+CGG + chr5_4:1297370-1297389 None:intergenic 40.0%
AAATAGGCTAGTGTCAATGG+AGG - chr5_4:1297383-1297402 Msa0828570:CDS 40.0%
AGCATATGTGCTAACTCAAC+TGG - chr5_4:1297643-1297662 Msa0828570:intron 40.0%
CTCTTCATGCTAAGCTTGTA+GGG - chr5_4:1297829-1297848 Msa0828570:CDS 40.0%
GTTACCTGAGACAATTTCAG+GGG + chr5_4:1298048-1298067 None:intergenic 40.0%
!! TTTGTCTTTTTGGGGGGTTT+TGG + chr5_4:1298292-1298311 None:intergenic 40.0%
AACTGAACCAAGAAACTCCA+AGG - chr5_4:1298408-1298427 Msa0828570:intron 40.0%
!!! CCAATCTATTTTTTCCGCGA+TGG + chr5_4:1298476-1298495 None:intergenic 40.0%
CCATCGCGGAAAAAATAGAT+TGG - chr5_4:1298473-1298492 Msa0828570:intron 40.0%
CACCTTGAATCAACAAGTGT+TGG - chr5_4:1298698-1298717 Msa0828570:intron 40.0%
TGTTGATCCGAACTTACAGA+AGG + chr5_4:1298737-1298756 None:intergenic 40.0%
AACAAAGAGGGAAGACATAG+AGG + chr5_4:1298997-1299016 None:intergenic 40.0%
!! CTGGGAAAACTTGTTAAGTC+AGG - chr5_4:1299174-1299193 Msa0828570:CDS 40.0%
GATTCAGTATTACCGTTGCT+TGG - chr5_4:1299318-1299337 Msa0828570:intron 40.0%
TATTACCGTTGCTTGGTACA+CGG - chr5_4:1299325-1299344 Msa0828570:intron 40.0%
GGTACACGGTCTTTAGTAAA+TGG - chr5_4:1299339-1299358 Msa0828570:intron 40.0%
CAACAGAGTCCTATAGAACT+TGG - chr5_4:1299388-1299407 Msa0828570:CDS 40.0%
TAGACCCGAGACATTCTTTA+AGG - chr5_4:1299750-1299769 Msa0828570:intron 40.0%
!!! TGATTTTTCAGGTAGCTGGA+TGG - chr5_4:1300012-1300031 Msa0828570:intron 40.0%
!!! CTGCTAAAGGCATTTTTGGA+AGG - chr5_4:1300125-1300144 Msa0828570:CDS 40.0%
AGATGCTGCAGAAAATATGC+AGG + chr5_4:1300312-1300331 None:intergenic 40.0%
TCTAGGAAGTCAACAGGTAA+AGG + chr5_4:1300376-1300395 None:intergenic 40.0%
TTCCTAGAGTTGTCAAACCT+TGG - chr5_4:1300388-1300407 Msa0828570:five_prime_UTR 40.0%
TTCCAAGGTTTGACAACTCT+AGG + chr5_4:1300393-1300412 None:intergenic 40.0%
TTACCTCAGCAGCCAAAAGT+AGG - chr5_4:1295005-1295024 Msa0828570:exon 45.0%
!! AATCCTACTTTTGGCTGCTG+AGG + chr5_4:1295011-1295030 None:intergenic 45.0%
! TAACCAAAGCACTACTGGCT+TGG + chr5_4:1295123-1295142 None:intergenic 45.0%
!! ATTCGGTGTTTGTATCTGCG+AGG + chr5_4:1295174-1295193 None:intergenic 45.0%
ACACCAACACATGCGGATAA+TGG + chr5_4:1295255-1295274 None:intergenic 45.0%
AATCACGACACCAACACATG+CGG + chr5_4:1295262-1295281 None:intergenic 45.0%
AAGTGCTACATTTGGAGGGA+TGG - chr5_4:1295329-1295348 Msa0828570:intron 45.0%
! AGGGATGGTTTTTCTTTGGG+TGG - chr5_4:1295344-1295363 Msa0828570:intron 45.0%
! GGGATGGTTTTTCTTTGGGT+GGG - chr5_4:1295345-1295364 Msa0828570:intron 45.0%
! GGATGGTTTTTCTTTGGGTG+GGG - chr5_4:1295346-1295365 Msa0828570:intron 45.0%
! TTTGGGTGGGGTGGTTTTTA+GGG - chr5_4:1295358-1295377 Msa0828570:intron 45.0%
! ATGGTGTTGAAGGTAGGTCT+TGG - chr5_4:1295495-1295514 Msa0828570:intron 45.0%
!!! GTGGCGTTTTGGTGTCTATT+TGG - chr5_4:1295525-1295544 Msa0828570:intron 45.0%
!!! GGCGTTTTGGTGTCTATTTG+GGG - chr5_4:1295527-1295546 Msa0828570:intron 45.0%
!! ACAAAGGCGTCGTATATAGG+TGG + chr5_4:1295569-1295588 None:intergenic 45.0%
AGTGGCAAACATGCTGTACT+TGG - chr5_4:1295943-1295962 Msa0828570:intron 45.0%
TCCGTGAACGATGATTTGAC+AGG - chr5_4:1296019-1296038 Msa0828570:CDS 45.0%
ACTAATTGACGACACTCTCG+AGG - chr5_4:1297060-1297079 Msa0828570:intron 45.0%
!! ACTCTAGAGCTGAGTATCTC+TGG - chr5_4:1297247-1297266 Msa0828570:intron 45.0%
CCGTTTGCGCAAGAGTAAAT+AGG - chr5_4:1297367-1297386 Msa0828570:CDS 45.0%
CATATGCTTACCTTCATGCC+TGG - chr5_4:1297725-1297744 Msa0828570:intron 45.0%
TCTTGCTAAACCAGGCATGA+AGG + chr5_4:1297738-1297757 None:intergenic 45.0%
TTCATGCCTGGTTTAGCAAG+AGG - chr5_4:1297737-1297756 Msa0828570:intron 45.0%
TCATGCCTGGTTTAGCAAGA+GGG - chr5_4:1297738-1297757 Msa0828570:intron 45.0%
GCTCTTCATGCTAAGCTTGT+AGG - chr5_4:1297828-1297847 Msa0828570:CDS 45.0%
TTAGCCCCTGAAATTGTCTC+AGG - chr5_4:1298041-1298060 Msa0828570:intron 45.0%
TTGAGCACGTGATAGAGGAT+AGG + chr5_4:1298206-1298225 None:intergenic 45.0%
CACACACAAGAGGAAAGACT+AGG - chr5_4:1298266-1298285 Msa0828570:intron 45.0%
GTAGCATCCTTGGAGTTTCT+TGG + chr5_4:1298418-1298437 None:intergenic 45.0%
ACACATGGTTGTAGCATCCT+TGG + chr5_4:1298428-1298447 None:intergenic 45.0%
AAGGATGCTACAACCATGTG+TGG - chr5_4:1298427-1298446 Msa0828570:intron 45.0%
GCGGATAAATTAGCCACACA+TGG + chr5_4:1298443-1298462 None:intergenic 45.0%
GCTTATCAAACCCGCTCTAA+GGG + chr5_4:1298613-1298632 None:intergenic 45.0%
AGCTTATCAAACCCGCTCTA+AGG + chr5_4:1298614-1298633 None:intergenic 45.0%
AAGTTCGGATCAACATCTCC+AGG - chr5_4:1298742-1298761 Msa0828570:intron 45.0%
! TTGCAGACGCTTGATAATCC+TGG + chr5_4:1298763-1298782 None:intergenic 45.0%
AAAGACCGTGTACCAAGCAA+CGG + chr5_4:1299333-1299352 None:intergenic 45.0%
GCTGGATGGACACAAGTATA+TGG - chr5_4:1300026-1300045 Msa0828570:intron 45.0%
TGCTCCTCTTATGGTTGCAA+AGG + chr5_4:1300063-1300082 None:intergenic 45.0%
! AGGCTCCATTTTCACAACCA+GGG - chr5_4:1300090-1300109 Msa0828570:CDS 45.0%
GATCTCCCTGGTTGTGAAAA+TGG + chr5_4:1300098-1300117 None:intergenic 45.0%
TTCACAACCAGGGAGATCAT+TGG - chr5_4:1300100-1300119 Msa0828570:CDS 45.0%
!! GAGATCATTGGTGCTGCTAA+AGG - chr5_4:1300112-1300131 Msa0828570:CDS 45.0%
!!! GGTGCTGCTAAAGGCATTTT+TGG - chr5_4:1300121-1300140 Msa0828570:CDS 45.0%
! GTATTCAGTCTGGAACCACT+AGG - chr5_4:1300205-1300224 Msa0828570:CDS 45.0%
ATGGAGTTGGCATTTCCTAG+TGG + chr5_4:1300223-1300242 None:intergenic 45.0%
! GACAACTCTAGGAAGTCAAC+AGG + chr5_4:1300382-1300401 None:intergenic 45.0%
!!! ATTTTTATTTTTTTTGTTTT+AGG - chr5_4:1296431-1296450 Msa0828570:intron 5.0%
!!! ATTTAAAATTTTCAATTTTA+AGG + chr5_4:1297994-1298013 None:intergenic 5.0%
CTTCCAAGCCAGTAGTGCTT+TGG - chr5_4:1295117-1295136 Msa0828570:CDS 50.0%
! TGGTTTTTCTTTGGGTGGGG+TGG - chr5_4:1295349-1295368 Msa0828570:intron 50.0%
! CTTTGGGTGGGGTGGTTTTT+AGG - chr5_4:1295357-1295376 Msa0828570:intron 50.0%
!! TTGGGTGGGGTGGTTTTTAG+GGG - chr5_4:1295359-1295378 Msa0828570:intron 50.0%
TTAGGCGGTGATGTTGGTGT+TGG - chr5_4:1295459-1295478 Msa0828570:intron 50.0%
GAAGGTAGGTCTTGGTTACG+TGG - chr5_4:1295503-1295522 Msa0828570:intron 50.0%
!! TTGGTTACGTGGTGGCGTTT+TGG - chr5_4:1295514-1295533 Msa0828570:intron 50.0%
GTCTCTGTTCGTCTTGTGCA+GGG - chr5_4:1295610-1295629 Msa0828570:intron 50.0%
GCTCCAACAGAAGAACAACC+AGG + chr5_4:1295745-1295764 None:intergenic 50.0%
GGTTGTTCTTCTGTTGGAGC+TGG - chr5_4:1295745-1295764 Msa0828570:intron 50.0%
! TGTTGGAGCTGGAGCTTTTG+TGG - chr5_4:1295756-1295775 Msa0828570:intron 50.0%
CTGTACTTGGAATCACCTGC+TGG - chr5_4:1295956-1295975 Msa0828570:intron 50.0%
TTGGAATCACCTGCTGGTGT+TGG - chr5_4:1295962-1295981 Msa0828570:intron 50.0%
TAGGAGAAACCAACACCAGC+AGG + chr5_4:1295974-1295993 None:intergenic 50.0%
GCGCTTAAATGTGTGAAGCG+CGG - chr5_4:1296898-1296917 Msa0828570:intron 50.0%
GCAGATAGGGAATCCTCTTC+TGG - chr5_4:1297206-1297225 Msa0828570:intron 50.0%
GCTGAGTATCTCTGGTCTCA+TGG - chr5_4:1297255-1297274 Msa0828570:intron 50.0%
!! ACCTCTGAGGTGACACCTTA+TGG - chr5_4:1297551-1297570 Msa0828570:CDS 50.0%
! TCCATAAGGTGTCACCTCAG+AGG + chr5_4:1297555-1297574 None:intergenic 50.0%
TCTCTCCCTCTTGCTAAACC+AGG + chr5_4:1297746-1297765 None:intergenic 50.0%
AGCTTGTAGGGATCACCACA+TGG - chr5_4:1297841-1297860 Msa0828570:CDS 50.0%
ACCACATGGACCACTTGTAG+TGG - chr5_4:1297855-1297874 Msa0828570:CDS 50.0%
CCACATGGACCACTTGTAGT+GGG - chr5_4:1297856-1297875 Msa0828570:CDS 50.0%
CTTCATTAGGGAGAGTAGGG+AGG - chr5_4:1298583-1298602 Msa0828570:intron 50.0%
CTCATGAGCTGCTCCTCTTA+TGG + chr5_4:1300072-1300091 None:intergenic 50.0%
CATAAGAGGAGCAGCTCATG+AGG - chr5_4:1300070-1300089 Msa0828570:CDS 50.0%
! GAGGCTCCATTTTCACAACC+AGG - chr5_4:1300089-1300108 Msa0828570:CDS 50.0%
!! AGCACTACTGGCTTGGAAGC+TGG + chr5_4:1295116-1295135 None:intergenic 55.0%
GGTAGGTCTTGGTTACGTGG+TGG - chr5_4:1295506-1295525 Msa0828570:intron 55.0%
GGTCTCTGTTCGTCTTGTGC+AGG - chr5_4:1295609-1295628 Msa0828570:intron 55.0%
GGGCCTGGTTGTTCTTCTGT+TGG - chr5_4:1295739-1295758 Msa0828570:intron 55.0%
! GCTGGAGCTTTTGTGGAGCA+TGG - chr5_4:1295763-1295782 Msa0828570:intron 55.0%
ATCACAGGGGAGAGCTATGC+AGG - chr5_4:1296682-1296701 Msa0828570:intron 55.0%
CCCACTACAAGTGGTCCATG+TGG + chr5_4:1297859-1297878 None:intergenic 55.0%
CCGCGATGGAGATTGTTGTG+CGG + chr5_4:1298462-1298481 None:intergenic 55.0%
CCGCACAACAATCTCCATCG+CGG - chr5_4:1298459-1298478 Msa0828570:intron 55.0%
CATTAGGGAGAGTAGGGAGG+AGG - chr5_4:1298586-1298605 Msa0828570:intron 55.0%
AGCAGCACCAATGATCTCCC+TGG + chr5_4:1300110-1300129 None:intergenic 55.0%
!! GGCGGTGATGTTGGTGTTGG+TGG - chr5_4:1295462-1295481 Msa0828570:intron 60.0%
AGGGAGGAGGACCCTTAGAG+CGG - chr5_4:1298599-1298618 Msa0828570:intron 60.0%
GGGAGGAGGACCCTTAGAGC+GGG - chr5_4:1298600-1298619 Msa0828570:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1294708 1300486 1294708 ID=Msa0828570;Name=Msa0828570
chr5_4 mRNA 1294708 1300486 1294708 ID=Msa0828570-mRNA-1;Parent=Msa0828570;Name=Msa0828570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=198|0.72|0.83|0.91|1|1|12|314|469
chr5_4 exon 1294708 1295171 1294708 ID=Msa0828570-mRNA-1:exon:350;Parent=Msa0828570-mRNA-1
chr5_4 exon 1295769 1295886 1295769 ID=Msa0828570-mRNA-1:exon:349;Parent=Msa0828570-mRNA-1
chr5_4 exon 1295977 1296069 1295977 ID=Msa0828570-mRNA-1:exon:348;Parent=Msa0828570-mRNA-1
chr5_4 exon 1297317 1297441 1297317 ID=Msa0828570-mRNA-1:exon:347;Parent=Msa0828570-mRNA-1
chr5_4 exon 1297530 1297616 1297530 ID=Msa0828570-mRNA-1:exon:346;Parent=Msa0828570-mRNA-1
chr5_4 exon 1297790 1297984 1297790 ID=Msa0828570-mRNA-1:exon:345;Parent=Msa0828570-mRNA-1
chr5_4 exon 1298346 1298416 1298346 ID=Msa0828570-mRNA-1:exon:344;Parent=Msa0828570-mRNA-1
chr5_4 exon 1298491 1298535 1298491 ID=Msa0828570-mRNA-1:exon:343;Parent=Msa0828570-mRNA-1
chr5_4 exon 1299154 1299249 1299154 ID=Msa0828570-mRNA-1:exon:342;Parent=Msa0828570-mRNA-1
chr5_4 exon 1299353 1299454 1299353 ID=Msa0828570-mRNA-1:exon:341;Parent=Msa0828570-mRNA-1
chr5_4 exon 1299678 1299761 1299678 ID=Msa0828570-mRNA-1:exon:340;Parent=Msa0828570-mRNA-1
chr5_4 exon 1300045 1300486 1300045 ID=Msa0828570-mRNA-1:exon:339;Parent=Msa0828570-mRNA-1
chr5_4 five_prime_UTR 1300289 1300486 1300289 ID=Msa0828570-mRNA-1:five_prime_utr;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1300045 1300288 1300045 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1299678 1299761 1299678 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1299353 1299454 1299353 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1299154 1299249 1299154 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1298491 1298535 1298491 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1298346 1298416 1298346 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1297790 1297984 1297790 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1297530 1297616 1297530 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1297317 1297441 1297317 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1295977 1296069 1295977 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1295769 1295886 1295769 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 CDS 1295022 1295171 1295022 ID=Msa0828570-mRNA-1:cds;Parent=Msa0828570-mRNA-1
chr5_4 three_prime_UTR 1294708 1295021 1294708 ID=Msa0828570-mRNA-1:three_prime_utr;Parent=Msa0828570-mRNA-1
Gene Sequence

>Msa0828570

ATGATATCTCAGACTCATTCATGTTTTGTGATTGCAACAATAATATTTTTTGTTACTGTAGGAGTAAATTCCTTTTTAGAAGTTGATAAGATAAGTAGTTTACCTCAGCAGCCAAAAGTAGGATTTCAACAATATGCTGGTTACATTACAGTTGATGAAATGCAGAAAAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTGCTTTGGTTAAATGGAGTAGTTGTTTTACAACTGGGTTTTAAATTAGGCGGTGATGTTGGTGTTGGTGGTTGTTTGTTAATGGTGTTGAAGGTAGGTCTTGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGTCCATTCAAACCAACTAAAAATGGTCTTATTAAAAATGATTACAGTTGGAACAAAGTGGCAAACATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTACTCTACTAATGAATCATTCTACGACTCCGTGAACGATGATTTGACAGGATACAAAAACAATGAGTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAAAGCAACTTCAATCTCAAGGGAATTGCAATAGGGAATCCTCTTCTGGAATTCAACACAGATTTCAACTCTAGAGCTGAGTATCTCTGGTCTCATGGACTGATATCAGATTCAACCTATGATTCCTTCACAAAAATATGCAACTTTTCACAAATTAGAAGACAATATGCAAGTGGCGCACTTACTACCGTTTGCGCAAGAGTAAATAGGCTAGTGTCAATGGAGATTAGTAGATATATTGATTCGTATGATGTTACTCTTGATGTGTGTCTATCAACAGTAGAACAACAAGCATATGTGCTAACTCAACTGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACATTCACATATTTGAATAGGAAAGAAGTGCAAGAAGCTCTTCATGCTAAGCTTGTAGGGATCACCACATGGACCACTTGTAGTGGAGTTCTCAAATATGACATGCAAAATTTAGAGATTCCAACCATATCTATTCTGGGAAAACTTGTTAAGTCAGGTGTAAGAGTTCTTGTATTCAGTGGAGATCAAGATTCAGTATTACCGTTGCTTGGTACACGGTCTTTAGTAAATGGATTAGCCAAAGATTTCGGTTTGAACACAACAGAGTCCTATAGAACTTGGTTTAATGGAAGACAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCCTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGCTGCTAAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTCTTTGA
Protein sequence

>Msa0828570

MISQTHSCFVIATIIFFVTVGVNSFLEVDKISSLPQQPKVGFQQYAGYITVDEMQKRALFYYFVEAEVEPASKPVVLWLNGVVVLQLGFKLGGDVGVGGCLLMVLKVGLGPGCSSVGAGAFVEHGPFKPTKNGLIKNDYSWNKVANMLYLESPAGVGFSYSTNESFYDSVNDDLTGYKNNEFFITGESYAGHYVPQLAQLIVQTKSNFNLKGIAIGNPLLEFNTDFNSRAEYLWSHGLISDSTYDSFTKICNFSQIRRQYASGALTTVCARVNRLVSMEISRYIDSYDVTLDVCLSTVEQQAYVLTQLQEGEKIDVCVEDETFTYLNRKEVQEALHAKLVGITTWTTCSGVLKYDMQNLEIPTISILGKLVKSGVRVLVFSGDQDSVLPLLGTRSLVNGLAKDFGLNTTESYRTWFNGRQVAGWTQVYGDMLSFATIRGAAHEAPFSQPGRSLVLLKAFLEGKSLPTIL*