Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416100 | sp|Q6H500|RSBZ4_ORYSJ | 54.601 | 163 | 71 | 2 | 58 | 218 | 53 | 214 | 1.18e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416100 | G7J2W2 | 88.779 | 303 | 25 | 4 | 1 | 302 | 1 | 295 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1416100 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1416100 | Msa1461690 | 0.861486 | 9.921976e-64 | -8.615850e-47 |
| Msa0810440 | Msa1416100 | 0.803122 | 4.052434e-49 | -8.615850e-47 |
| Msa0174100 | Msa1416100 | 0.823089 | 1.670877e-53 | -8.615850e-47 |
| Msa0383460 | Msa1416100 | 0.867249 | 1.572974e-65 | -8.615850e-47 |
| Msa0477390 | Msa1416100 | 0.873750 | 1.154047e-67 | -8.615850e-47 |
| Msa1066770 | Msa1416100 | 0.804346 | 2.258050e-49 | -8.615850e-47 |
| Msa1074210 | Msa1416100 | 0.823107 | 1.655357e-53 | -8.615850e-47 |
| Msa1133690 | Msa1416100 | 0.831673 | 1.460945e-55 | -8.615850e-47 |
| Msa1159160 | Msa1416100 | 0.849418 | 3.275620e-60 | -8.615850e-47 |
| Msa0500610 | Msa1416100 | -0.802644 | 5.087166e-49 | -8.615850e-47 |
| Msa0512950 | Msa1416100 | -0.805899 | 1.068460e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416100 | MtrunA17_Chr3g0139301 | 88.779 | 303 | 25 | 4 | 1 | 302 | 1 | 295 | 0.0 | 540 |
| Msa1416100 | MtrunA17_Chr1g0147491 | 57.047 | 298 | 103 | 12 | 21 | 302 | 51 | 339 | 2.01e-83 | 254 |
| Msa1416100 | MtrunA17_Chr3g0139571 | 82.432 | 74 | 13 | 0 | 127 | 200 | 1 | 74 | 2.50e-30 | 109 |
| Msa1416100 | MtrunA17_Chr1g0190761 | 48.611 | 144 | 67 | 4 | 98 | 238 | 177 | 316 | 9.80e-23 | 97.4 |
| Msa1416100 | MtrunA17_Chr7g0274141 | 50.000 | 138 | 62 | 3 | 78 | 215 | 150 | 280 | 1.45e-21 | 93.6 |
| Msa1416100 | MtrunA17_Chr1g0155551 | 32.203 | 118 | 80 | 0 | 100 | 217 | 2 | 119 | 1.40e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416100 | AT5G24800.1 | 45.148 | 237 | 102 | 9 | 73 | 302 | 62 | 277 | 1.59e-45 | 155 |
| Msa1416100 | AT5G28770.2 | 48.175 | 137 | 65 | 3 | 102 | 238 | 129 | 259 | 1.54e-19 | 87.4 |
| Msa1416100 | AT5G28770.1 | 48.175 | 137 | 65 | 3 | 102 | 238 | 122 | 252 | 1.58e-19 | 87.4 |
| Msa1416100 | AT5G28770.3 | 52.000 | 100 | 46 | 1 | 102 | 201 | 129 | 226 | 1.56e-15 | 75.1 |
| Msa1416100 | AT4G02640.3 | 47.917 | 96 | 47 | 1 | 126 | 221 | 221 | 313 | 2.23e-13 | 70.5 |
| Msa1416100 | AT4G02640.2 | 47.917 | 96 | 47 | 1 | 126 | 221 | 221 | 313 | 2.49e-13 | 70.5 |
| Msa1416100 | AT4G02640.4 | 47.917 | 96 | 47 | 1 | 126 | 221 | 215 | 307 | 2.64e-13 | 70.1 |
| Msa1416100 | AT4G02640.1 | 47.917 | 96 | 47 | 1 | 126 | 221 | 215 | 307 | 2.71e-13 | 70.1 |
| Msa1416100 | AT3G54620.1 | 46.429 | 84 | 45 | 0 | 126 | 209 | 229 | 312 | 4.87e-11 | 63.5 |
Find 79 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTCAGCCATCTATTTA+TGG | 0.124761 | tig0024317:+38713 | Msa1416100:CDS |
| TAAATATTTGGCCTTAATTA+AGG | 0.134054 | tig0024317:+39888 | Msa1416100:exon |
| TTTGGTTTATTAGCTGAAAC+TGG | 0.195300 | tig0024317:-38846 | None:intergenic |
| AGTGGTGAGAATAGAGAAAA+TGG | 0.221718 | tig0024317:-35457 | None:intergenic |
| AACACTATACAAACAGTTTA+TGG | 0.233451 | tig0024317:+39406 | Msa1416100:CDS |
| TTTGACAGAAATACCTTCTA+TGG | 0.244115 | tig0024317:-38980 | None:intergenic |
| CTATGAGTTGTGTAAATATT+TGG | 0.245467 | tig0024317:+39876 | Msa1416100:CDS |
| AGTTTACCGGTAGGAGAGTT+TGG | 0.295352 | tig0024317:-35623 | None:intergenic |
| AATTCGAATCTTGCTGGGTT+TGG | 0.309808 | tig0024317:+39800 | Msa1416100:CDS |
| TCTTGCTGGGTTTGGAAACT+TGG | 0.316743 | tig0024317:+39808 | Msa1416100:CDS |
| GTGCACAATTCGAATCTTGC+TGG | 0.321584 | tig0024317:+39794 | Msa1416100:CDS |
| TCAAGTGAAACCCTTAATTA+AGG | 0.326188 | tig0024317:-39899 | None:intergenic |
| ATATTATGCTCTTTGTTGTT+TGG | 0.326642 | tig0024317:-38864 | None:intergenic |
| AAATATTTGGCCTTAATTAA+GGG | 0.379075 | tig0024317:+39889 | Msa1416100:exon |
| AGCACTGATGGTGGAATGTT+TGG | 0.379902 | tig0024317:-38684 | None:intergenic |
| AATGTTTGGGAGTGAAGTTT+TGG | 0.394976 | tig0024317:-38670 | None:intergenic |
| CTCTCTTCTCCGGCGAGCGA+TGG | 0.398900 | tig0024317:+35491 | Msa1416100:exon |
| ATTTCCCTGCAGGACATTGA+TGG | 0.400011 | tig0024317:-39738 | None:intergenic |
| ATGTGGCATGCGGCGAATAC+TGG | 0.408973 | tig0024317:-39705 | None:intergenic |
| TGAATCTCGATTACGAGTTT+CGG | 0.410788 | tig0024317:+35544 | Msa1416100:CDS |
| AGAATAGAGAAAATGGGAAA+AGG | 0.412399 | tig0024317:-35450 | None:intergenic |
| CAGCCACACATAATCTTTCA+TGG | 0.416557 | tig0024317:-40126 | None:intergenic |
| GAATAGAGAAAATGGGAAAA+GGG | 0.416725 | tig0024317:-35449 | None:intergenic |
| TTGATATGAAACGCCATAGA+AGG | 0.418460 | tig0024317:+38967 | Msa1416100:CDS |
| ACAATGATGTCGTCGACAAT+GGG | 0.419225 | tig0024317:+39840 | Msa1416100:CDS |
| GGTGAAGTTAGCTGAGGATA+TGG | 0.427027 | tig0024317:+39592 | Msa1416100:intron |
| TTTGTCTGAACTTGAGTCTC+AGG | 0.431765 | tig0024317:+39136 | Msa1416100:CDS |
| AACCGCAACACCACCGTATG+AGG | 0.448822 | tig0024317:-39768 | None:intergenic |
| TCCGACGAGGATAATGAATC+AGG | 0.453955 | tig0024317:+38918 | Msa1416100:CDS |
| TTTCATGGCACTGTATTGAA+TGG | 0.460117 | tig0024317:-40111 | None:intergenic |
| GTATCCAAGTCTTGCCGATA+CGG | 0.463283 | tig0024317:+35566 | Msa1416100:CDS |
| CAGCCATCTATTTATGGCAC+TGG | 0.467277 | tig0024317:+38719 | Msa1416100:CDS |
| GCCAACCATCAATGTCCTGC+AGG | 0.476677 | tig0024317:+39733 | Msa1416100:CDS |
| ATACCAGTGCCATAAATAGA+TGG | 0.477311 | tig0024317:-38722 | None:intergenic |
| TGCACAATTCGAATCTTGCT+GGG | 0.484135 | tig0024317:+39795 | Msa1416100:CDS |
| ACAAAGAGCATAATATCAAA+GGG | 0.490699 | tig0024317:+38871 | Msa1416100:CDS |
| CGCTTTCCAAACTCTCCTAC+CGG | 0.497621 | tig0024317:+35617 | Msa1416100:CDS |
| CACAACTCATAGCATTGCTT+AGG | 0.501122 | tig0024317:-39865 | None:intergenic |
| TACAATGATGTCGTCGACAA+TGG | 0.501669 | tig0024317:+39839 | Msa1416100:CDS |
| CCCTGCAGGACATTGATGGT+TGG | 0.501779 | tig0024317:-39734 | None:intergenic |
| GTGGTGAGAATAGAGAAAAT+GGG | 0.519514 | tig0024317:-35456 | None:intergenic |
| AACAAAGAGCATAATATCAA+AGG | 0.520064 | tig0024317:+38870 | Msa1416100:CDS |
| GCCTCCGTATCGGCAAGACT+TGG | 0.526307 | tig0024317:-35570 | None:intergenic |
| TTGTCGACGACATCATTGTA+AGG | 0.529396 | tig0024317:-39836 | None:intergenic |
| AAGAGAGAAAACTTAAACAG+TGG | 0.530559 | tig0024317:-35475 | None:intergenic |
| CCGTTGTTGCCATCGCTCGC+CGG | 0.532690 | tig0024317:-35500 | None:intergenic |
| TTGGTTTATTAGCTGAAACT+GGG | 0.535446 | tig0024317:-38845 | None:intergenic |
| AGGCACTATTATTTCCCTGC+AGG | 0.536074 | tig0024317:-39748 | None:intergenic |
| GCACTGATGGTGGAATGTTT+GGG | 0.539183 | tig0024317:-38683 | None:intergenic |
| TGTAGAAGCTTTGAGAGCTA+AGG | 0.540256 | tig0024317:+39484 | Msa1416100:CDS |
| GGAAATAATAGTGCCTCATA+CGG | 0.548614 | tig0024317:+39755 | Msa1416100:CDS |
| GATACGGAGGCATTCATGAC+CGG | 0.550151 | tig0024317:+35582 | Msa1416100:CDS |
| ACCTGATTCATTATCCTCGT+CGG | 0.562154 | tig0024317:-38919 | None:intergenic |
| AGAATCAATAGTAGCACTGA+TGG | 0.570342 | tig0024317:-38696 | None:intergenic |
| GCGAGTCAGCCAAGAGGTCA+AGG | 0.571020 | tig0024317:+39096 | Msa1416100:CDS |
| AAACTGATTGTTTAGTGATG+TGG | 0.571542 | tig0024317:-39633 | None:intergenic |
| CCGGCGAGCGATGGCAACAA+CGG | 0.577221 | tig0024317:+35500 | Msa1416100:exon |
| ATCAATAGTAGCACTGATGG+TGG | 0.581341 | tig0024317:-38693 | None:intergenic |
| GATTCATTATCCTCGTCGGA+TGG | 0.582930 | tig0024317:-38915 | None:intergenic |
| GGTCATGAATGCCTCCGTAT+CGG | 0.589824 | tig0024317:-35580 | None:intergenic |
| TCATACGGTGGTGTTGCGGT+TGG | 0.590129 | tig0024317:+39770 | Msa1416100:CDS |
| TGCCTCATACGGTGGTGTTG+CGG | 0.602335 | tig0024317:+39766 | Msa1416100:CDS |
| AATATCAAAGGGACATCAAG+TGG | 0.605319 | tig0024317:+38882 | Msa1416100:CDS |
| AATAATAGTGCCTCATACGG+TGG | 0.620063 | tig0024317:+39758 | Msa1416100:CDS |
| TCCAAGTCTTGCCGATACGG+AGG | 0.642233 | tig0024317:+35569 | Msa1416100:CDS |
| CCAACCATCAATGTCCTGCA+GGG | 0.644784 | tig0024317:+39734 | Msa1416100:CDS |
| GAAAGCGGCAGAGCAAACTC+CGG | 0.658673 | tig0024317:-35601 | None:intergenic |
| TACTAGTCAACAATTTCATG+AGG | 0.659476 | tig0024317:+39430 | Msa1416100:CDS |
| GTATTGTATGACAAAGTGAG+AGG | 0.663415 | tig0024317:-40089 | None:intergenic |
| CGGTAGGAGAGTTTGGAAAG+CGG | 0.664439 | tig0024317:-35616 | None:intergenic |
| ATAATAGGTGAAGTTAGCTG+AGG | 0.671237 | tig0024317:+39586 | Msa1416100:intron |
| AGTCAGCCAAGAGGTCAAGG+TGG | 0.684615 | tig0024317:+39099 | Msa1416100:CDS |
| CTGGTAGTCATGTTGAGTTG+TGG | 0.702154 | tig0024317:-39686 | None:intergenic |
| TTCATCTGATCCATCCGACG+AGG | 0.710432 | tig0024317:+38905 | Msa1416100:CDS |
| CTAATTGCGAGTCAGCCAAG+AGG | 0.711883 | tig0024317:+39090 | Msa1416100:CDS |
| GTGCCATGAAAGATTATGTG+TGG | 0.719900 | tig0024317:+40123 | Msa1416100:three_prime_UTR |
| TTGGCGAAACATGTGGCATG+CGG | 0.727060 | tig0024317:-39715 | None:intergenic |
| CAATGATGTCGTCGACAATG+GGG | 0.731606 | tig0024317:+39841 | Msa1416100:CDS |
| TTGATGGTTGGCGAAACATG+TGG | 0.736785 | tig0024317:-39722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAAAATGTTTG+TGG | + | tig0024317:36082-36101 | Msa1416100:intron | 10.0% |
| !! | GTTAAATTTCAAAATAAAAA+AGG | + | tig0024317:36929-36948 | Msa1416100:intron | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | - | tig0024317:37974-37993 | None:intergenic | 10.0% |
| !! | ATAAATAAGATTAAAATCTA+AGG | - | tig0024317:37975-37994 | None:intergenic | 10.0% |
| !!! | TTTTATTTTATTTGAAGACA+TGG | - | tig0024317:35820-35839 | None:intergenic | 15.0% |
| !! | ACAAATAGAGTTAAATTTAT+AGG | - | tig0024317:35865-35884 | None:intergenic | 15.0% |
| !! | GATTATTAGTATAATATTAG+TGG | + | tig0024317:36389-36408 | Msa1416100:intron | 15.0% |
| !! | ATAAAGGAAAATGAATTTAT+TGG | + | tig0024317:36599-36618 | Msa1416100:intron | 15.0% |
| !!! | TCTAAAACTTATAAATTGAT+TGG | - | tig0024317:36680-36699 | None:intergenic | 15.0% |
| !! | AATATAACAATTGTTATGAA+GGG | + | tig0024317:36860-36879 | Msa1416100:intron | 15.0% |
| !! | TTAATATAATTAATCTCGTT+AGG | + | tig0024317:37340-37359 | Msa1416100:intron | 15.0% |
| !!! | TGAATTTCATTTTTTTTTGA+GGG | - | tig0024317:37518-37537 | None:intergenic | 15.0% |
| !!! | TTGAATTTCATTTTTTTTTG+AGG | - | tig0024317:37519-37538 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAAGAAATGAAG+AGG | + | tig0024317:37867-37886 | Msa1416100:intron | 15.0% |
| !! | CTAAAATAAATTCTTCTTAA+GGG | - | tig0024317:38546-38565 | None:intergenic | 15.0% |
| !!! | TCTAAAATAAATTCTTCTTA+AGG | - | tig0024317:38547-38566 | None:intergenic | 15.0% |
| !! | TTTACATATGCTATTATAAT+AGG | + | tig0024317:39571-39590 | Msa1416100:intron | 15.0% |
| !!! | AATCAAATACATCAGTTTTT+TGG | + | tig0024317:36001-36020 | Msa1416100:intron | 20.0% |
| !! | TATTAGTATAATATTAGTGG+TGG | + | tig0024317:36392-36411 | Msa1416100:intron | 20.0% |
| !! | ATTAGTATAATATTAGTGGT+GGG | + | tig0024317:36393-36412 | Msa1416100:intron | 20.0% |
| !! | AAAGAATATTAATCTTGTGT+AGG | - | tig0024317:36427-36446 | None:intergenic | 20.0% |
| !! | AGATTAATATTCTTTGCATT+CGG | + | tig0024317:36432-36451 | Msa1416100:intron | 20.0% |
| !! | GAATATAACAATTGTTATGA+AGG | + | tig0024317:36859-36878 | Msa1416100:intron | 20.0% |
| !! | ATATAACAATTGTTATGAAG+GGG | + | tig0024317:36861-36880 | Msa1416100:intron | 20.0% |
| !!! | GTTGTTTTTTTTAAAGCAAA+CGG | + | tig0024317:37197-37216 | Msa1416100:intron | 20.0% |
| !!! | TTGTTTTTTTTAAAGCAAAC+GGG | + | tig0024317:37198-37217 | Msa1416100:intron | 20.0% |
| !!! | TTAGTGTCTTATTATTTACT+AGG | + | tig0024317:37274-37293 | Msa1416100:intron | 20.0% |
| !!! | TACTAGGTTTATCATTTTTT+TGG | + | tig0024317:37290-37309 | Msa1416100:intron | 20.0% |
| !!! | CTCTTGTTTCTTTTTTTTTT+TGG | - | tig0024317:37388-37407 | None:intergenic | 20.0% |
| !!! | TTAATAGAGAAAGTTTTACA+CGG | + | tig0024317:37426-37445 | Msa1416100:intron | 20.0% |
| !!! | AAATTAATAGTTTTACACTG+TGG | - | tig0024317:37575-37594 | None:intergenic | 20.0% |
| !! | AAAAACTATAAACTACTAGT+AGG | + | tig0024317:37637-37656 | Msa1416100:intron | 20.0% |
| !! | AAAACTATAAACTACTAGTA+GGG | + | tig0024317:37638-37657 | Msa1416100:intron | 20.0% |
| !!! | GATTCTTATTCAAATTTTTG+AGG | - | tig0024317:37696-37715 | None:intergenic | 20.0% |
| !! | AAGAGGATTTATATTTCATA+AGG | + | tig0024317:37884-37903 | Msa1416100:intron | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | + | tig0024317:38059-38078 | Msa1416100:intron | 20.0% |
| !!! | AAACTTTAAAAGATACTACA+TGG | + | tig0024317:38289-38308 | Msa1416100:intron | 20.0% |
| !!! | CATATAGTATTTTTTGTTGT+TGG | - | tig0024317:38320-38339 | None:intergenic | 20.0% |
| !! | CAACAACAAAAAATACTATA+TGG | + | tig0024317:38318-38337 | Msa1416100:intron | 20.0% |
| !! | AACAAAAAATACTATATGGT+TGG | + | tig0024317:38322-38341 | Msa1416100:intron | 20.0% |
| !!! | TAAATATTTGGCCTTAATTA+AGG | + | tig0024317:39888-39907 | Msa1416100:exon | 20.0% |
| !!! | AAATATTTGGCCTTAATTAA+GGG | + | tig0024317:39889-39908 | Msa1416100:exon | 20.0% |
| !!! | AAGTTTGTTCTTGTTATTTC+CGG | - | tig0024317:35783-35802 | None:intergenic | 25.0% |
| ! | ACTCTATTTGTTTAGTAAGT+TGG | + | tig0024317:35874-35893 | Msa1416100:intron | 25.0% |
| !!! | AGTTTTTTGGCTGATAATTT+GGG | + | tig0024317:36014-36033 | Msa1416100:intron | 25.0% |
| ! | ATTGAGATATATGAGAGAAA+GGG | + | tig0024317:36037-36056 | Msa1416100:intron | 25.0% |
| ! | AAAAATGTTTGTGGACATAT+TGG | + | tig0024317:36091-36110 | Msa1416100:intron | 25.0% |
| ! | AAAATGTTTGTGGACATATT+GGG | + | tig0024317:36092-36111 | Msa1416100:intron | 25.0% |
| ! | TACTATGAATTGAAGACATT+GGG | - | tig0024317:36328-36347 | None:intergenic | 25.0% |
| ! | TTATTCATTTGAAGAGTCAT+GGG | - | tig0024317:36583-36602 | None:intergenic | 25.0% |
| ! | TTTATTCATTTGAAGAGTCA+TGG | - | tig0024317:36584-36603 | None:intergenic | 25.0% |
| ! | ATGACTCTTCAAATGAATAA+AGG | + | tig0024317:36583-36602 | Msa1416100:intron | 25.0% |
| ! | TTAATCAACGTTTATATCTC+TGG | + | tig0024317:36637-36656 | Msa1416100:intron | 25.0% |
| ! | CAATTCTTCAAATGTAACTT+AGG | - | tig0024317:36723-36742 | None:intergenic | 25.0% |
| ! | TATAACAATTGTTATGAAGG+GGG | + | tig0024317:36862-36881 | Msa1416100:intron | 25.0% |
| !!! | GGGTATCGAAATTAATATAA+AGG | + | tig0024317:37658-37677 | Msa1416100:intron | 25.0% |
| !! | CGAAATTAATATAAAGGTAC+AGG | + | tig0024317:37664-37683 | Msa1416100:intron | 25.0% |
| !!! | TATTCAAATTTTTGAGGTCT+TGG | - | tig0024317:37690-37709 | None:intergenic | 25.0% |
| ! | TCTCAATTTCATTTGATAGA+TGG | - | tig0024317:37723-37742 | None:intergenic | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | + | tig0024317:37907-37926 | Msa1416100:intron | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | + | tig0024317:38060-38079 | Msa1416100:intron | 25.0% |
| !!! | ATACATTTTTCAAGTTGAGT+TGG | - | tig0024317:38265-38284 | None:intergenic | 25.0% |
| ! | CTCAACTTGAAAAATGTATA+TGG | + | tig0024317:38266-38285 | Msa1416100:intron | 25.0% |
| !! | ATACATGTAGTTTGACATTT+TGG | + | tig0024317:38794-38813 | Msa1416100:intron | 25.0% |
| !! | ATTTTGGATTGAATTGCATA+TGG | + | tig0024317:38810-38829 | Msa1416100:intron | 25.0% |
| !!! | ATATTATGCTCTTTGTTGTT+TGG | - | tig0024317:38867-38886 | None:intergenic | 25.0% |
| !! | AACAAAGAGCATAATATCAA+AGG | + | tig0024317:38870-38889 | Msa1416100:CDS | 25.0% |
| !! | ACAAAGAGCATAATATCAAA+GGG | + | tig0024317:38871-38890 | Msa1416100:CDS | 25.0% |
| ! | ACAACACTTCTTATTATATG+TGG | + | tig0024317:39019-39038 | Msa1416100:intron | 25.0% |
| !!! | GAAGTCATTAATTTTGTTTC+TGG | + | tig0024317:39177-39196 | Msa1416100:intron | 25.0% |
| !!! | AATTTTGTTTCTGGAATTGT+AGG | + | tig0024317:39186-39205 | Msa1416100:intron | 25.0% |
| ! | TGAGAGATCAAAATTCAAAT+GGG | - | tig0024317:39359-39378 | None:intergenic | 25.0% |
| ! | AACACTATACAAACAGTTTA+TGG | + | tig0024317:39406-39425 | Msa1416100:CDS | 25.0% |
| ! | CTATGAGTTGTGTAAATATT+TGG | + | tig0024317:39876-39895 | Msa1416100:CDS | 25.0% |
| !! | GTTGAACGTTTTGTATAAAA+AGG | + | tig0024317:40007-40026 | Msa1416100:three_prime_UTR | 25.0% |
| GAATAGAGAAAATGGGAAAA+GGG | - | tig0024317:35452-35471 | None:intergenic | 30.0% | |
| AGAATAGAGAAAATGGGAAA+AGG | - | tig0024317:35453-35472 | None:intergenic | 30.0% | |
| AAGAGAGAAAACTTAAACAG+TGG | - | tig0024317:35478-35497 | None:intergenic | 30.0% | |
| !! | TTTAAGTTTTCTCTCTTCTC+CGG | + | tig0024317:35481-35500 | Msa1416100:five_prime_UTR | 30.0% |
| !!! | CAGTTTTTTGGCTGATAATT+TGG | + | tig0024317:36013-36032 | Msa1416100:intron | 30.0% |
| GATTGAGATATATGAGAGAA+AGG | + | tig0024317:36036-36055 | Msa1416100:intron | 30.0% | |
| AAATGTTTGTGGACATATTG+GGG | + | tig0024317:36093-36112 | Msa1416100:intron | 30.0% | |
| TTGAACGAAAACCTAAAGTA+GGG | + | tig0024317:36150-36169 | Msa1416100:intron | 30.0% | |
| GCTCACAAAAAATCTTCATA+AGG | - | tig0024317:36189-36208 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTGAGCAAAAGACT+TGG | + | tig0024317:36197-36216 | Msa1416100:intron | 30.0% |
| AGCAAGACAGCATTAAAAAA+AGG | - | tig0024317:36286-36305 | None:intergenic | 30.0% | |
| ACTATGAATTGAAGACATTG+GGG | - | tig0024317:36327-36346 | None:intergenic | 30.0% | |
| GTACTATGAATTGAAGACAT+TGG | - | tig0024317:36329-36348 | None:intergenic | 30.0% | |
| AGAAATGAAGACAAGATTCT+TGG | - | tig0024317:36362-36381 | None:intergenic | 30.0% | |
| ATATTTGTACGACTATAGCT+TGG | - | tig0024317:36531-36550 | None:intergenic | 30.0% | |
| TTATATAAACCATTCTCTCG+TGG | - | tig0024317:36788-36807 | None:intergenic | 30.0% | |
| !! | GCTTTAAAAAAAACAACGAC+CGG | - | tig0024317:37194-37213 | None:intergenic | 30.0% |
| GATCAATTATGTGTAATCGT+TGG | - | tig0024317:37553-37572 | None:intergenic | 30.0% | |
| TGATGAATTCAAGAATGACA+TGG | + | tig0024317:37937-37956 | Msa1416100:intron | 30.0% | |
| TATAGAGACAGATTGTAAGA+CGG | + | tig0024317:38203-38222 | Msa1416100:intron | 30.0% | |
| ATCACTTCATCAAATCACAT+AGG | - | tig0024317:38470-38489 | None:intergenic | 30.0% | |
| AATGTCAAACTACATGTATG+AGG | - | tig0024317:38793-38812 | None:intergenic | 30.0% | |
| TTGGTTTATTAGCTGAAACT+GGG | - | tig0024317:38848-38867 | None:intergenic | 30.0% | |
| ! | TTTGGTTTATTAGCTGAAAC+TGG | - | tig0024317:38849-38868 | None:intergenic | 30.0% |
| TTTGACAGAAATACCTTCTA+TGG | - | tig0024317:38983-39002 | None:intergenic | 30.0% | |
| TGATATAATGATTCGTGACA+TGG | + | tig0024317:39053-39072 | Msa1416100:intron | 30.0% | |
| ! | CAGGTAACTAATCAATGTTT+TGG | + | tig0024317:39155-39174 | Msa1416100:intron | 30.0% |
| ! | TAATTCTGAGAGCAAATTCT+AGG | + | tig0024317:39254-39273 | Msa1416100:intron | 30.0% |
| CATGCTTCAATTGAAATAGT+AGG | - | tig0024317:39283-39302 | None:intergenic | 30.0% | |
| CTGAGAGATCAAAATTCAAA+TGG | - | tig0024317:39360-39379 | None:intergenic | 30.0% | |
| !! | CATTTGAATTTTGATCTCTC+AGG | + | tig0024317:39358-39377 | Msa1416100:intron | 30.0% |
| TACTAGTCAACAATTTCATG+AGG | + | tig0024317:39430-39449 | Msa1416100:CDS | 30.0% | |
| AAACTGATTGTTTAGTGATG+TGG | - | tig0024317:39636-39655 | None:intergenic | 30.0% | |
| TCAAGTGAAACCCTTAATTA+AGG | - | tig0024317:39902-39921 | None:intergenic | 30.0% | |
| GTGGTGAGAATAGAGAAAAT+GGG | - | tig0024317:35459-35478 | None:intergenic | 35.0% | |
| AGTGGTGAGAATAGAGAAAA+TGG | - | tig0024317:35460-35479 | None:intergenic | 35.0% | |
| TGAATCTCGATTACGAGTTT+CGG | + | tig0024317:35544-35563 | Msa1416100:CDS | 35.0% | |
| AGAAAGAGAGAAGAGTTTAC+CGG | - | tig0024317:35639-35658 | None:intergenic | 35.0% | |
| ACATATTGGGGAGTTAAAAG+AGG | + | tig0024317:36105-36124 | Msa1416100:intron | 35.0% | |
| CATATTGGGGAGTTAAAAGA+GGG | + | tig0024317:36106-36125 | Msa1416100:intron | 35.0% | |
| ATATTGGGGAGTTAAAAGAG+GGG | + | tig0024317:36107-36126 | Msa1416100:intron | 35.0% | |
| TAAAAGAGGGGAAGTGAAAA+AGG | + | tig0024317:36119-36138 | Msa1416100:intron | 35.0% | |
| GTTGAACGAAAACCTAAAGT+AGG | + | tig0024317:36149-36168 | Msa1416100:intron | 35.0% | |
| AAAACCTAAAGTAGGGATGT+GGG | + | tig0024317:36157-36176 | Msa1416100:intron | 35.0% | |
| TATGAATTGAAGACATTGGG+GGG | - | tig0024317:36325-36344 | None:intergenic | 35.0% | |
| CTATGAATTGAAGACATTGG+GGG | - | tig0024317:36326-36345 | None:intergenic | 35.0% | |
| TTATAAATTCAAGCAGCCGT+TGG | + | tig0024317:36461-36480 | Msa1416100:intron | 35.0% | |
| TATAAATTCAAGCAGCCGTT+GGG | + | tig0024317:36462-36481 | Msa1416100:intron | 35.0% | |
| !! | GCAGACTCTTTTTCATTTGA+GGG | - | tig0024317:36556-36575 | None:intergenic | 35.0% |
| !! | AGCAGACTCTTTTTCATTTG+AGG | - | tig0024317:36557-36576 | None:intergenic | 35.0% |
| !! | CTCTCGTGGATCATTTTTAT+TGG | - | tig0024317:36774-36793 | None:intergenic | 35.0% |
| AAAAATGATCCACGAGAGAA+TGG | + | tig0024317:36776-36795 | Msa1416100:intron | 35.0% | |
| ! | TAGAGAAAGTTTTACACGGT+CGG | + | tig0024317:37430-37449 | Msa1416100:intron | 35.0% |
| CGAATGAATACTTCAAGACT+AGG | + | tig0024317:37598-37617 | Msa1416100:intron | 35.0% | |
| CAATAAAATCTCAGTCTGAC+CGG | - | tig0024317:38045-38064 | None:intergenic | 35.0% | |
| ! | TTTGAGACAATTTCTCATGC+AGG | + | tig0024317:38120-38139 | Msa1416100:intron | 35.0% |
| !! | GAATACTGATAGCGTGTTTT+TGG | - | tig0024317:38153-38172 | None:intergenic | 35.0% |
| TGAGCACATCATTTATGTAG+AGG | + | tig0024317:38356-38375 | Msa1416100:intron | 35.0% | |
| ACTTTGTAACATCCATGTGA+AGG | + | tig0024317:38490-38509 | Msa1416100:intron | 35.0% | |
| CTTTGTAACATCCATGTGAA+GGG | + | tig0024317:38491-38510 | Msa1416100:intron | 35.0% | |
| CATGAAAAGGTTACATAAGC+TGG | - | tig0024317:38594-38613 | None:intergenic | 35.0% | |
| CCTGCTATTCAATCATGAAA+AGG | - | tig0024317:38607-38626 | None:intergenic | 35.0% | |
| ! | CCTTTTCATGATTGAATAGC+AGG | + | tig0024317:38604-38623 | Msa1416100:intron | 35.0% |
| ! | GTGAGTTCATTTTCAACTTG+TGG | + | tig0024317:38632-38651 | Msa1416100:CDS | 35.0% |
| ! | AGTTCATTTTCAACTTGTGG+TGG | + | tig0024317:38635-38654 | Msa1416100:CDS | 35.0% |
| ! | ATGTTTGGGAGTGAAGTTTT+GGG | - | tig0024317:38672-38691 | None:intergenic | 35.0% |
| ! | AATGTTTGGGAGTGAAGTTT+TGG | - | tig0024317:38673-38692 | None:intergenic | 35.0% |
| ! | AGAATCAATAGTAGCACTGA+TGG | - | tig0024317:38699-38718 | None:intergenic | 35.0% |
| GATTCTCAGCCATCTATTTA+TGG | + | tig0024317:38713-38732 | Msa1416100:CDS | 35.0% | |
| ATACCAGTGCCATAAATAGA+TGG | - | tig0024317:38725-38744 | None:intergenic | 35.0% | |
| !! | ATTTATGGCACTGGTATGTA+TGG | + | tig0024317:38728-38747 | Msa1416100:intron | 35.0% |
| AATATCAAAGGGACATCAAG+TGG | + | tig0024317:38882-38901 | Msa1416100:CDS | 35.0% | |
| TTGATATGAAACGCCATAGA+AGG | + | tig0024317:38967-38986 | Msa1416100:CDS | 35.0% | |
| !! | TTGTTTCTGGAATTGTAGGT+AGG | + | tig0024317:39190-39209 | Msa1416100:intron | 35.0% |
| CACAATTTGATATCTCATGC+AGG | + | tig0024317:39216-39235 | Msa1416100:intron | 35.0% | |
| !! | CTACATCTGATTTTAGCACT+CGG | - | tig0024317:39469-39488 | None:intergenic | 35.0% |
| ATAATAGGTGAAGTTAGCTG+AGG | + | tig0024317:39586-39605 | Msa1416100:intron | 35.0% | |
| GGAAATAATAGTGCCTCATA+CGG | + | tig0024317:39755-39774 | Msa1416100:CDS | 35.0% | |
| GTATTGTATGACAAAGTGAG+AGG | - | tig0024317:40092-40111 | None:intergenic | 35.0% | |
| TTTCATGGCACTGTATTGAA+TGG | - | tig0024317:40114-40133 | None:intergenic | 35.0% | |
| GAGATATATGAGAGAAAGGG+AGG | + | tig0024317:36040-36059 | Msa1416100:intron | 40.0% | |
| ! | TATGAGAGAAAGGGAGGTAT+TGG | + | tig0024317:36046-36065 | Msa1416100:intron | 40.0% |
| GAAAACCTAAAGTAGGGATG+TGG | + | tig0024317:36156-36175 | Msa1416100:intron | 40.0% | |
| TAGTGTGAACGCATGACTTT+GGG | + | tig0024317:36252-36271 | Msa1416100:intron | 40.0% | |
| ! | AATGCTGTCTTGCTCTCTTT+TGG | + | tig0024317:36292-36311 | Msa1416100:intron | 40.0% |
| ATAAATTCAAGCAGCCGTTG+GGG | + | tig0024317:36463-36482 | Msa1416100:intron | 40.0% | |
| AATGCACTCCTAACGTAAAC+CGG | + | tig0024317:37172-37191 | Msa1416100:intron | 40.0% | |
| ! | CGGTCAGACTGAGATTTTAT+TGG | + | tig0024317:38043-38062 | Msa1416100:intron | 40.0% |
| !!! | CTCTGTTTTTACCCTTCACA+TGG | - | tig0024317:38505-38524 | None:intergenic | 40.0% |
| !! | ATCAATAGTAGCACTGATGG+TGG | - | tig0024317:38696-38715 | None:intergenic | 40.0% |
| TGAGGAATGTTGAGATGTGT+AGG | - | tig0024317:38775-38794 | None:intergenic | 40.0% | |
| TGAATTGCATATGGAGCAGT+TGG | + | tig0024317:38819-38838 | Msa1416100:intron | 40.0% | |
| ACCTGATTCATTATCCTCGT+CGG | - | tig0024317:38922-38941 | None:intergenic | 40.0% | |
| ATTCGTGACATGGTTTCAGA+AGG | + | tig0024317:39063-39082 | Msa1416100:intron | 40.0% | |
| TTCGTGACATGGTTTCAGAA+GGG | + | tig0024317:39064-39083 | Msa1416100:intron | 40.0% | |
| TTTGTCTGAACTTGAGTCTC+AGG | + | tig0024317:39136-39155 | Msa1416100:CDS | 40.0% | |
| !! | TCAGGTTGAAAAACTGACAC+TGG | + | tig0024317:39376-39395 | Msa1416100:intron | 40.0% |
| !! | TGTAGAAGCTTTGAGAGCTA+AGG | + | tig0024317:39484-39503 | Msa1416100:CDS | 40.0% |
| AATAATAGTGCCTCATACGG+TGG | + | tig0024317:39758-39777 | Msa1416100:CDS | 40.0% | |
| TGCACAATTCGAATCTTGCT+GGG | + | tig0024317:39795-39814 | Msa1416100:CDS | 40.0% | |
| AATTCGAATCTTGCTGGGTT+TGG | + | tig0024317:39800-39819 | Msa1416100:CDS | 40.0% | |
| TTGTCGACGACATCATTGTA+AGG | - | tig0024317:39839-39858 | None:intergenic | 40.0% | |
| TACAATGATGTCGTCGACAA+TGG | + | tig0024317:39839-39858 | Msa1416100:CDS | 40.0% | |
| ACAATGATGTCGTCGACAAT+GGG | + | tig0024317:39840-39859 | Msa1416100:CDS | 40.0% | |
| CACAACTCATAGCATTGCTT+AGG | - | tig0024317:39868-39887 | None:intergenic | 40.0% | |
| GTGCCATGAAAGATTATGTG+TGG | + | tig0024317:40123-40142 | Msa1416100:three_prime_UTR | 40.0% | |
| CAGCCACACATAATCTTTCA+TGG | - | tig0024317:40129-40148 | None:intergenic | 40.0% | |
| GTATCCAAGTCTTGCCGATA+CGG | + | tig0024317:35566-35585 | Msa1416100:CDS | 45.0% | |
| AGTTTACCGGTAGGAGAGTT+TGG | - | tig0024317:35626-35645 | None:intergenic | 45.0% | |
| AGAGAGAAGAGTTTACCGGT+AGG | - | tig0024317:35635-35654 | None:intergenic | 45.0% | |
| ! | TTTTGCCACGTCTGATGACA+TGG | + | tig0024317:35711-35730 | Msa1416100:intron | 45.0% |
| TCGCTCAACGCTTACTTAAC+CGG | + | tig0024317:35761-35780 | Msa1416100:intron | 45.0% | |
| CTAGTGTGAACGCATGACTT+TGG | + | tig0024317:36251-36270 | Msa1416100:intron | 45.0% | |
| AGTGTGAACGCATGACTTTG+GGG | + | tig0024317:36253-36272 | Msa1416100:intron | 45.0% | |
| !!! | GTCTTGCTCTCTTTTGGAGT+TGG | + | tig0024317:36298-36317 | Msa1416100:intron | 45.0% |
| ! | GAAGACAAGATTCTTGGTGC+TGG | - | tig0024317:36356-36375 | None:intergenic | 45.0% |
| TAAGTTCCACCAATCCCCAA+CGG | - | tig0024317:36480-36499 | None:intergenic | 45.0% | |
| ! | AACAACGACCGGTTTACGTT+AGG | - | tig0024317:37183-37202 | None:intergenic | 45.0% |
| TCAGTCTGACCGGAAATCAT+GGG | - | tig0024317:38035-38054 | None:intergenic | 45.0% | |
| GAGACAATTTCTCATGCAGG+AGG | + | tig0024317:38123-38142 | Msa1416100:intron | 45.0% | |
| !! | GCACTGATGGTGGAATGTTT+GGG | - | tig0024317:38686-38705 | None:intergenic | 45.0% |
| !! | AGCACTGATGGTGGAATGTT+TGG | - | tig0024317:38687-38706 | None:intergenic | 45.0% |
| CAGCCATCTATTTATGGCAC+TGG | + | tig0024317:38719-38738 | Msa1416100:CDS | 45.0% | |
| GATTCATTATCCTCGTCGGA+TGG | - | tig0024317:38918-38937 | None:intergenic | 45.0% | |
| TCCGACGAGGATAATGAATC+AGG | + | tig0024317:38918-38937 | Msa1416100:CDS | 45.0% | |
| ! | TTTTCTCCACCTTGACCTCT+TGG | - | tig0024317:39108-39127 | None:intergenic | 45.0% |
| GGTGAAGTTAGCTGAGGATA+TGG | + | tig0024317:39592-39611 | Msa1416100:intron | 45.0% | |
| ! | CTGGTAGTCATGTTGAGTTG+TGG | - | tig0024317:39689-39708 | None:intergenic | 45.0% |
| ! | TTGATGGTTGGCGAAACATG+TGG | - | tig0024317:39725-39744 | None:intergenic | 45.0% |
| ATTTCCCTGCAGGACATTGA+TGG | - | tig0024317:39741-39760 | None:intergenic | 45.0% | |
| AGGCACTATTATTTCCCTGC+AGG | - | tig0024317:39751-39770 | None:intergenic | 45.0% | |
| GTGCACAATTCGAATCTTGC+TGG | + | tig0024317:39794-39813 | Msa1416100:CDS | 45.0% | |
| TCTTGCTGGGTTTGGAAACT+TGG | + | tig0024317:39808-39827 | Msa1416100:CDS | 45.0% | |
| CAATGATGTCGTCGACAATG+GGG | + | tig0024317:39841-39860 | Msa1416100:CDS | 45.0% | |
| !!! | ATTTTTACTTATATATAATT+TGG | - | tig0024317:35946-35965 | None:intergenic | 5.0% |
| !!! | AATATGTTAATTTTTTTTTT+AGG | - | tig0024317:36832-36851 | None:intergenic | 5.0% |
| GGTCATGAATGCCTCCGTAT+CGG | - | tig0024317:35583-35602 | None:intergenic | 50.0% | |
| !! | GATACGGAGGCATTCATGAC+CGG | + | tig0024317:35582-35601 | Msa1416100:CDS | 50.0% |
| CGGTAGGAGAGTTTGGAAAG+CGG | - | tig0024317:35619-35638 | None:intergenic | 50.0% | |
| CGCTTTCCAAACTCTCCTAC+CGG | + | tig0024317:35617-35636 | Msa1416100:CDS | 50.0% | |
| GGATTCCATGTCATCAGACG+TGG | - | tig0024317:35719-35738 | None:intergenic | 50.0% | |
| CCTCACACAAACTGCATGGT+AGG | - | tig0024317:35740-35759 | None:intergenic | 50.0% | |
| CCTACCATGCAGTTTGTGTG+AGG | + | tig0024317:35737-35756 | Msa1416100:intron | 50.0% | |
| CGATCCTCACACAAACTGCA+TGG | - | tig0024317:35744-35763 | None:intergenic | 50.0% | |
| GCAACCCACATCCCTACTTT+AGG | - | tig0024317:36164-36183 | None:intergenic | 50.0% | |
| GTGTGAACGCATGACTTTGG+GGG | + | tig0024317:36254-36273 | Msa1416100:intron | 50.0% | |
| ATGAAGGGGGAGAGATACAG+AGG | + | tig0024317:36875-36894 | Msa1416100:intron | 50.0% | |
| AGTCTGACCGGAAATCATGG+GGG | - | tig0024317:38033-38052 | None:intergenic | 50.0% | |
| CAGTCTGACCGGAAATCATG+GGG | - | tig0024317:38034-38053 | None:intergenic | 50.0% | |
| CTCAGTCTGACCGGAAATCA+TGG | - | tig0024317:38036-38055 | None:intergenic | 50.0% | |
| TTCATCTGATCCATCCGACG+AGG | + | tig0024317:38905-38924 | Msa1416100:CDS | 50.0% | |
| CTAATTGCGAGTCAGCCAAG+AGG | + | tig0024317:39090-39109 | Msa1416100:CDS | 50.0% | |
| TTGGCGAAACATGTGGCATG+CGG | - | tig0024317:39718-39737 | None:intergenic | 50.0% | |
| CCAACCATCAATGTCCTGCA+GGG | + | tig0024317:39734-39753 | Msa1416100:CDS | 50.0% | |
| TCCAAGTCTTGCCGATACGG+AGG | + | tig0024317:35569-35588 | Msa1416100:CDS | 55.0% | |
| GAAAGCGGCAGAGCAAACTC+CGG | - | tig0024317:35604-35623 | None:intergenic | 55.0% | |
| ! | AACGCATGACTTTGGGGGTG+TGG | + | tig0024317:36259-36278 | Msa1416100:intron | 55.0% |
| ! | ACGCATGACTTTGGGGGTGT+GGG | + | tig0024317:36260-36279 | Msa1416100:intron | 55.0% |
| TTCAAGCAGCCGTTGGGGAT+TGG | + | tig0024317:36468-36487 | Msa1416100:intron | 55.0% | |
| AAGGGGGAGAGATACAGAGG+AGG | + | tig0024317:36878-36897 | Msa1416100:intron | 55.0% | |
| AGGGGGAGAGATACAGAGGA+GGG | + | tig0024317:36879-36898 | Msa1416100:intron | 55.0% | |
| ! | GATACAGAGGAGGGAGTGTG+AGG | + | tig0024317:36888-36907 | Msa1416100:intron | 55.0% |
| ! | AGAGGAGGGAGTGTGAGGTA+GGG | + | tig0024317:36893-36912 | Msa1416100:intron | 55.0% |
| GAGTGTGAGGTAGGGAGAGA+GGG | + | tig0024317:36901-36920 | Msa1416100:intron | 55.0% | |
| AGTGTGAGGTAGGGAGAGAG+GGG | + | tig0024317:36902-36921 | Msa1416100:intron | 55.0% | |
| AGTCAGCCAAGAGGTCAAGG+TGG | + | tig0024317:39099-39118 | Msa1416100:CDS | 55.0% | |
| ATGTGGCATGCGGCGAATAC+TGG | - | tig0024317:39708-39727 | None:intergenic | 55.0% | |
| GCCAACCATCAATGTCCTGC+AGG | + | tig0024317:39733-39752 | Msa1416100:CDS | 55.0% | |
| ! | CCCTGCAGGACATTGATGGT+TGG | - | tig0024317:39737-39756 | None:intergenic | 55.0% |
| ! | TGCCTCATACGGTGGTGTTG+CGG | + | tig0024317:39766-39785 | Msa1416100:CDS | 55.0% |
| AACCGCAACACCACCGTATG+AGG | - | tig0024317:39771-39790 | None:intergenic | 55.0% | |
| !! | TCATACGGTGGTGTTGCGGT+TGG | + | tig0024317:39770-39789 | Msa1416100:CDS | 55.0% |
| ! | GCCTCCGTATCGGCAAGACT+TGG | - | tig0024317:35573-35592 | None:intergenic | 60.0% |
| AAGCAGCCGTTGGGGATTGG+TGG | + | tig0024317:36471-36490 | Msa1416100:intron | 60.0% | |
| ! | CAGAGGAGGGAGTGTGAGGT+AGG | + | tig0024317:36892-36911 | Msa1416100:intron | 60.0% |
| GGAGTGTGAGGTAGGGAGAG+AGG | + | tig0024317:36900-36919 | Msa1416100:intron | 60.0% | |
| GTGTGAGGTAGGGAGAGAGG+GGG | + | tig0024317:36903-36922 | Msa1416100:intron | 60.0% | |
| CCGGAAATCATGGGGGTGGT+GGG | - | tig0024317:38026-38045 | None:intergenic | 60.0% | |
| CCCACCACCCCCATGATTTC+CGG | + | tig0024317:38023-38042 | Msa1416100:intron | 60.0% | |
| ACCGGAAATCATGGGGGTGG+TGG | - | tig0024317:38027-38046 | None:intergenic | 60.0% | |
| CTGACCGGAAATCATGGGGG+TGG | - | tig0024317:38030-38049 | None:intergenic | 60.0% | |
| GCGAGTCAGCCAAGAGGTCA+AGG | + | tig0024317:39096-39115 | Msa1416100:CDS | 60.0% | |
| CTCTCTTCTCCGGCGAGCGA+TGG | + | tig0024317:35491-35510 | Msa1416100:exon | 65.0% | |
| CCGTTGTTGCCATCGCTCGC+CGG | - | tig0024317:35503-35522 | None:intergenic | 65.0% | |
| CCGGCGAGCGATGGCAACAA+CGG | + | tig0024317:35500-35519 | Msa1416100:exon | 65.0% | |
| TGAGGTAGGGAGAGAGGGGG+AGG | + | tig0024317:36906-36925 | Msa1416100:intron | 65.0% | |
| GAGGTAGGGAGAGAGGGGGA+GGG | + | tig0024317:36907-36926 | Msa1416100:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024317 | gene | 35449 | 40161 | 35449 | ID=Msa1416100;Name=Msa1416100 |
| tig0024317 | mRNA | 35449 | 40161 | 35449 | ID=Msa1416100-mRNA-1;Parent=Msa1416100;Name=Msa1416100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=61|1|1|1|1|1|6|257|302 |
| tig0024317 | exon | 35449 | 35638 | 35449 | ID=Msa1416100-mRNA-1:exon:22760;Parent=Msa1416100-mRNA-1 |
| tig0024317 | exon | 38626 | 38740 | 38626 | ID=Msa1416100-mRNA-1:exon:22761;Parent=Msa1416100-mRNA-1 |
| tig0024317 | exon | 38838 | 38988 | 38838 | ID=Msa1416100-mRNA-1:exon:22762;Parent=Msa1416100-mRNA-1 |
| tig0024317 | exon | 39082 | 39157 | 39082 | ID=Msa1416100-mRNA-1:exon:22763;Parent=Msa1416100-mRNA-1 |
| tig0024317 | exon | 39380 | 39505 | 39380 | ID=Msa1416100-mRNA-1:exon:22764;Parent=Msa1416100-mRNA-1 |
| tig0024317 | exon | 39593 | 40161 | 39593 | ID=Msa1416100-mRNA-1:exon:22765;Parent=Msa1416100-mRNA-1 |
| tig0024317 | five_prime_UTR | 35449 | 35509 | 35449 | ID=Msa1416100-mRNA-1:five_prime_utr;Parent=Msa1416100-mRNA-1 |
| tig0024317 | CDS | 35510 | 35638 | 35510 | ID=Msa1416100-mRNA-1:cds;Parent=Msa1416100-mRNA-1 |
| tig0024317 | CDS | 38626 | 38740 | 38626 | ID=Msa1416100-mRNA-1:cds;Parent=Msa1416100-mRNA-1 |
| tig0024317 | CDS | 38838 | 38988 | 38838 | ID=Msa1416100-mRNA-1:cds;Parent=Msa1416100-mRNA-1 |
| tig0024317 | CDS | 39082 | 39157 | 39082 | ID=Msa1416100-mRNA-1:cds;Parent=Msa1416100-mRNA-1 |
| tig0024317 | CDS | 39380 | 39505 | 39380 | ID=Msa1416100-mRNA-1:cds;Parent=Msa1416100-mRNA-1 |
| tig0024317 | CDS | 39593 | 39904 | 39593 | ID=Msa1416100-mRNA-1:cds;Parent=Msa1416100-mRNA-1 |
| tig0024317 | three_prime_UTR | 39905 | 40161 | 39905 | ID=Msa1416100-mRNA-1:three_prime_utr;Parent=Msa1416100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
