AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066770 MtrunA17_Chr7g0247841 98.324 537 9 0 1 537 1 537 0.0 1082
Msa1066770 MtrunA17_Chr8g0348831 80.827 532 95 3 7 537 15 540 0.0 883
Msa1066770 MtrunA17_Chr6g0475601 70.196 510 148 3 21 529 27 533 0.0 748
Msa1066770 MtrunA17_Chr7g0214221 51.303 499 240 2 22 519 30 526 3.21e-174 503
Msa1066770 MtrunA17_Chr1g0213851 54.545 231 103 1 287 517 1 229 1.09e-85 265
Msa1066770 MtrunA17_Chr1g0213841 45.133 113 61 1 174 285 6 118 1.65e-23 95.9
Msa1066770 MtrunA17_Chr1g0203091 30.769 221 112 6 341 523 145 362 3.33e-22 98.6
Msa1066770 MtrunA17_Chr3g0139491 31.076 251 141 10 274 515 89 316 4.08e-21 94.7
Msa1066770 MtrunA17_Chr1g0147151 35.256 156 86 5 345 500 162 302 7.76e-19 88.2
Msa1066770 MtrunA17_Chr1g0213831 34.021 97 64 0 37 133 30 126 2.47e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066770 AT1G01650.1 72.486 527 144 1 8 533 12 538 0.0 798
Msa1066770 AT1G63690.1 72.781 507 134 3 22 527 27 530 0.0 763
Msa1066770 AT1G63690.2 72.584 507 135 3 22 527 27 530 0.0 761
Msa1066770 AT1G01650.3 73.485 396 104 1 139 533 1 396 0.0 605
Msa1066770 AT1G01650.4 73.485 396 104 1 139 533 1 396 0.0 605
Msa1066770 AT1G01650.2 73.485 396 104 1 139 533 1 396 0.0 605
Msa1066770 AT2G43070.2 48.369 521 259 4 22 535 28 545 7.52e-162 471
Msa1066770 AT2G43070.1 48.738 515 260 3 22 535 28 539 9.64e-162 471
Msa1066770 AT2G43070.4 48.369 521 259 4 22 535 87 604 5.13e-161 471
Msa1066770 AT2G43070.3 48.738 515 260 3 22 535 87 598 7.21e-161 471
Msa1066770 AT1G05820.1 45.749 494 264 3 28 519 30 521 1.30e-145 430
Msa1066770 AT1G05820.2 45.895 475 253 3 28 500 30 502 1.34e-141 418
Msa1066770 AT1G05820.4 47.781 383 196 3 139 519 1 381 8.70e-121 361
Msa1066770 AT1G05820.3 41.910 377 215 3 28 402 30 404 3.21e-92 288
Msa1066770 AT4G33410.1 26.724 348 178 15 238 533 47 369 5.85e-21 95.1
Msa1066770 AT2G03120.1 34.503 171 97 5 345 515 161 316 6.20e-21 94.7

Find 145 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTTGAGGTTTGGTATT+TGG 0.124495 7_2:-60906444 None:intergenic
CCATTCTCTGTGCTTCTTAC+TGG 0.166120 7_2:+60905088 Msa1066770:CDS
CTTCTTCTTCTCTGTGTTCA+TGG 0.169898 7_2:+60902415 Msa1066770:CDS
TCCACACCATCAATTGAAAT+TGG 0.185349 7_2:-60904108 None:intergenic
CTTCTTTCCCAATGACAAAA+AGG 0.201334 7_2:-60907739 None:intergenic
GGTTACAGTGTCATCGGTTT+CGG 0.211475 7_2:+60906854 Msa1066770:CDS
CATAGCATTCGCTGTGGTTT+GGG 0.211873 7_2:+60906192 Msa1066770:CDS
CCTTCCTATATGACATCTTC+TGG 0.226829 7_2:+60906604 Msa1066770:CDS
GTTTATGCTTTACAAACTAA+TGG 0.249829 7_2:+60905484 Msa1066770:CDS
TGAGCAAGAGAAGCTATTAA+AGG 0.254085 7_2:+60905140 Msa1066770:CDS
GTTACAGTGTCATCGGTTTC+GGG 0.257862 7_2:+60906855 Msa1066770:CDS
ATACATAGCTTTGAATTTGA+TGG 0.290429 7_2:+60907281 Msa1066770:CDS
AATGAAACCGATATTGATAT+TGG 0.297635 7_2:+60904765 Msa1066770:CDS
AAAGTTCCAATTTCAATTGA+TGG 0.322977 7_2:+60904102 Msa1066770:CDS
TTGTCACATCCAGGTTTCTT+AGG 0.323154 7_2:-60902491 None:intergenic
AACTAGAATACCTTATTCTT+AGG 0.323199 7_2:-60904246 None:intergenic
GCATAGCATTCGCTGTGGTT+TGG 0.331467 7_2:+60906191 Msa1066770:CDS
ACCGCGTTTATTCGATCCTT+GGG 0.332274 7_2:+60906829 Msa1066770:CDS
CTTTAGCGTTATTTATAATC+AGG 0.343087 7_2:-60904496 None:intergenic
GCTCACGGGCGAGATCATTT+TGG 0.348166 7_2:+60904406 Msa1066770:intron
GGGTATCGCTTTGATAATTA+CGG 0.355376 7_2:+60906408 Msa1066770:intron
TTGTAGCAAACCTAAGAATA+AGG 0.355750 7_2:+60904236 Msa1066770:CDS
AAGATGGTTCATTGATGTTC+TGG 0.357441 7_2:+60905508 Msa1066770:CDS
GTCGGTGTTGGTGCAAGATT+TGG 0.369570 7_2:+60904144 Msa1066770:CDS
ATATACTTTACAGGTATGAT+TGG 0.373989 7_2:+60907082 Msa1066770:intron
CGGCAATGGCAACTCTAGTA+TGG 0.378558 7_2:-60904200 None:intergenic
TTCTTCAGCTATATTTGCCT+TGG 0.386977 7_2:-60904456 None:intergenic
TTTATGCTTTACAAACTAAT+GGG 0.398548 7_2:+60905485 Msa1066770:CDS
GTGAGAATCTTGATTGTAGA+TGG 0.398863 7_2:-60902359 None:intergenic
CGCGGTATCTTGAGCAGCAT+GGG 0.404406 7_2:-60906812 None:intergenic
AGGTATTCCAATATCAATAT+CGG 0.409099 7_2:-60904772 None:intergenic
ACGATGAGTGCCTATGGTTT+AGG 0.409248 7_2:+60907144 Msa1066770:CDS
CCAAAGTACAAACAGATTCA+TGG 0.410036 7_2:-60908047 None:intergenic
ATGTGACAACAACTTTGTTC+TGG 0.416582 7_2:+60902505 Msa1066770:CDS
TACCGCGTTTATTCGATCCT+TGG 0.419818 7_2:+60906828 Msa1066770:CDS
ATAATCATCACCTTGAGGTT+TGG 0.432877 7_2:-60906451 None:intergenic
GGGACTGCAAACTTGCTTAG+TGG 0.435026 7_2:+60905923 Msa1066770:intron
ATTTGAGGTGTGAAAAGAAA+AGG 0.437729 7_2:-60902334 None:intergenic
TTTGAGGTGTGAAAAGAAAA+GGG 0.438964 7_2:-60902333 None:intergenic
AAGAATATCTTGACCAATCC+AGG 0.442943 7_2:-60906239 None:intergenic
TCCAATTTCAATTGATGGTG+TGG 0.445372 7_2:+60904107 Msa1066770:CDS
TTTACTAACCAAGTGTAAAT+GGG 0.447535 7_2:-60907338 None:intergenic
CCATGAATCTGTTTGTACTT+TGG 0.451169 7_2:+60908047 Msa1066770:three_prime_UTR
GTGCTTCTTACTGGTCTGCC+TGG 0.461814 7_2:+60905097 Msa1066770:CDS
GGAGACTTATAACAAATCAT+AGG 0.463251 7_2:+60907888 Msa1066770:three_prime_UTR
AACACCCTCTCTGGCAGTCC+AGG 0.466046 7_2:-60905115 None:intergenic
CTTCCTATATGACATCTTCT+GGG 0.469044 7_2:+60906605 Msa1066770:CDS
TTTACAAACTAATGGGAAGA+TGG 0.472450 7_2:+60905492 Msa1066770:CDS
CCCTCTTGACTGTTAGATGT+TGG 0.473230 7_2:+60908019 Msa1066770:three_prime_UTR
TGGGGTGGTTACAGTGTCAT+CGG 0.481076 7_2:+60906848 Msa1066770:CDS
ACACCCAGAAGATGTCATAT+AGG 0.489454 7_2:-60906608 None:intergenic
ACAAAGTTGTTGTCACATCC+AGG 0.490168 7_2:-60902500 None:intergenic
TAGCTTTGAATTTGATGGAT+GGG 0.490494 7_2:+60907286 Msa1066770:CDS
GCGGGAGATTACTCGTCTAC+TGG 0.490969 7_2:-60907837 None:intergenic
TTAGGTTTGCTACAACAGTC+AGG 0.492193 7_2:-60904228 None:intergenic
TGCAAGATTTGGACCTACAT+TGG 0.494196 7_2:+60904155 Msa1066770:CDS
TTGCTCAATAACACCCTCTC+TGG 0.497863 7_2:-60905124 None:intergenic
AACACAGAGAAGAAGAAGAT+AGG 0.498115 7_2:-60902410 None:intergenic
ACCTGCTGTCATGCTTCCAC+TGG 0.500327 7_2:+60904791 Msa1066770:CDS
ATGTGAAACAGCACCGAAGA+AGG 0.501888 7_2:-60906143 None:intergenic
ATACTCTCCACGACGTCCAC+AGG 0.502854 7_2:+60905023 Msa1066770:CDS
TCTTGACTGTTAGATGTTGG+AGG 0.506148 7_2:+60908022 Msa1066770:three_prime_UTR
TATGTGAAAGTACCCTTCTT+CGG 0.508554 7_2:+60906130 Msa1066770:CDS
CCATGAGAGTGTGATGATAG+TGG 0.511765 7_2:+60906650 Msa1066770:CDS
AAGAAGATAGGTGTAAAAGA+AGG 0.514055 7_2:-60902398 None:intergenic
CTGATTATAAATAACGCTAA+AGG 0.517532 7_2:+60904497 Msa1066770:CDS
TGGTAGTACAAAGGAAGAAG+AGG 0.519622 7_2:-60902252 None:intergenic
GTCATGCTTCCACTGGATGC+CGG 0.519867 7_2:+60904798 Msa1066770:CDS
TTGTGGACGATGAGTGCCTA+TGG 0.521690 7_2:+60907138 Msa1066770:CDS
CCACTATCATCACACTCTCA+TGG 0.522407 7_2:-60906650 None:intergenic
GGGACTATATACAGCAAAGC+TGG 0.523296 7_2:-60907318 None:intergenic
CCAGTAAGAAGCACAGAGAA+TGG 0.528439 7_2:-60905088 None:intergenic
TCCAACATCTAACAGTCAAG+AGG 0.532187 7_2:-60908020 None:intergenic
GCAAATATAGCTGAAGAAGC+TGG 0.537504 7_2:+60904461 Msa1066770:CDS
GTGCCTTGTACAATATCGTT+AGG 0.539714 7_2:-60907964 None:intergenic
TCTGCCTGGACTGCCAGAGA+GGG 0.540666 7_2:+60905111 Msa1066770:CDS
TTCGAGCAGGATACTTCTTG+TGG 0.550885 7_2:+60907121 Msa1066770:CDS
CGTGTATCGTATGCCTGGAT+TGG 0.553817 7_2:+60906226 Msa1066770:CDS
AGTATTGCTCCTAAGAAACC+TGG 0.554160 7_2:+60902482 Msa1066770:CDS
AGCGTTATTTATAATCAGGA+TGG 0.554823 7_2:-60904492 None:intergenic
GAAGAAGAGGAAATCGTGAA+GGG 0.554969 7_2:-60902239 None:intergenic
CAGCCTAACGATATTGTACA+AGG 0.555015 7_2:+60907961 Msa1066770:three_prime_UTR
GTCTGCCTGGACTGCCAGAG+AGG 0.555701 7_2:+60905110 Msa1066770:CDS
ACGCGGTATCTTGAGCAGCA+TGG 0.557275 7_2:-60906813 None:intergenic
GAAAATGCTACTAAAAGCCC+TGG 0.557670 7_2:-60906890 None:intergenic
TCCTCTTTGATGTGAGGGCA+AGG 0.564220 7_2:-60907807 None:intergenic
ATAGCTTTGAATTTGATGGA+TGG 0.564608 7_2:+60907285 Msa1066770:CDS
CTTCTAAATATAGAGAATGC+TGG 0.565274 7_2:+60905392 Msa1066770:CDS
ATGGTTCATTGATGTTCTGG+TGG 0.565632 7_2:+60905511 Msa1066770:CDS
CAGCGAATGCTATGCAGAAG+GGG 0.567384 7_2:-60906183 None:intergenic
TCCAGTGGAAGCATGACAGC+AGG 0.569868 7_2:-60904792 None:intergenic
GGTGATAAGAGTGGAGAAGA+TGG 0.570626 7_2:+60906785 Msa1066770:CDS
AACCTACAATACTATTCCGC+GGG 0.570740 7_2:-60907855 None:intergenic
CTATAGCATACCTAAACCAT+AGG 0.572085 7_2:-60907154 None:intergenic
TCAATTGATGGTGTGGAAAG+CGG 0.573126 7_2:+60904114 Msa1066770:CDS
ATAGCATTCGCTGTGGTTTG+GGG 0.575530 7_2:+60906193 Msa1066770:CDS
AGCGGCGAGTATGTCGGTGT+TGG 0.576766 7_2:+60904132 Msa1066770:CDS
ACAGCGAATGCTATGCAGAA+GGG 0.578803 7_2:-60906184 None:intergenic
TGATGATCCTCTTTGATGTG+AGG 0.582482 7_2:-60907813 None:intergenic
TATATAGTCCCATTTACACT+TGG 0.584363 7_2:+60907330 Msa1066770:CDS
AAAATGTTCATAGTTTCAGA+TGG 0.586719 7_2:+60906086 Msa1066770:intron
AGATGAAGGTGGTAGTACAA+AGG 0.588109 7_2:-60902261 None:intergenic
AAGGCTTCACCGGCATCCAG+TGG 0.588506 7_2:-60904807 None:intergenic
CGTTTATTCGATCCTTGGGG+TGG 0.589284 7_2:+60906833 Msa1066770:CDS
GCGAAGAGGAACCTTCGAGC+AGG 0.590157 7_2:+60907108 Msa1066770:CDS
CAATCCAGGCATACGATACA+CGG 0.590284 7_2:-60906225 None:intergenic
TATATACAAAACAAGTCCAC+AGG 0.595990 7_2:+60904837 Msa1066770:CDS
TTGAGGTGTGAAAAGAAAAG+GGG 0.596596 7_2:-60902332 None:intergenic
CACAGCGAATGCTATGCAGA+AGG 0.597296 7_2:-60906185 None:intergenic
TTGAATTTGATGGATGGGCA+TGG 0.598006 7_2:+60907291 Msa1066770:CDS
TTGTCATTGGGAAAGAAGAG+AGG 0.601284 7_2:+60907744 Msa1066770:CDS
CCAGAAGATGTCATATAGGA+AGG 0.604622 7_2:-60906604 None:intergenic
CCAACATCTAACAGTCAAGA+GGG 0.606250 7_2:-60908019 None:intergenic
TTGTGAAACTACATTGTCCT+CGG 0.612612 7_2:-60904433 None:intergenic
TGTCCAAATACCAAACCTCA+AGG 0.614521 7_2:+60906441 Msa1066770:CDS
GATGATCCTCTTTGATGTGA+GGG 0.616637 7_2:-60907812 None:intergenic
AAACCTACAATACTATTCCG+CGG 0.619560 7_2:-60907856 None:intergenic
GGTGTGAAAAGAAAAGGGGT+TGG 0.620289 7_2:-60902328 None:intergenic
TGTGAAACAGCACCGAAGAA+GGG 0.620570 7_2:-60906142 None:intergenic
GCTACAACAGTCAGGAGGGT+CGG 0.621755 7_2:-60904220 None:intergenic
AAGAAGAGGAAATCGTGAAG+GGG 0.624384 7_2:-60902238 None:intergenic
ACAGTCAGGAGGGTCGGCAA+TGG 0.630961 7_2:-60904214 None:intergenic
GTAGCTCGCGGTGATAAGAG+TGG 0.630975 7_2:+60906776 Msa1066770:CDS
GTTTGCTACAACAGTCAGGA+GGG 0.632295 7_2:-60904224 None:intergenic
GTGGAAAGCGGCGAGTATGT+CGG 0.632476 7_2:+60904126 Msa1066770:CDS
GGAAGAAGAGGAAATCGTGA+AGG 0.633839 7_2:-60902240 None:intergenic
TGATTGTAGATGGAAATTTG+AGG 0.635882 7_2:-60902349 None:intergenic
CCGCGTTTATTCGATCCTTG+GGG 0.643328 7_2:+60906830 Msa1066770:CDS
ACATCGACCTGTGGACGTCG+TGG 0.644315 7_2:-60905030 None:intergenic
ACAAGAAGTATCCTGCTCGA+AGG 0.648586 7_2:-60907119 None:intergenic
TTACAGTGTCATCGGTTTCG+GGG 0.651346 7_2:+60906856 Msa1066770:CDS
AACGAATGAAAGTGCTGCCG+TGG 0.651931 7_2:-60905441 None:intergenic
GGTTTGCTACAACAGTCAGG+AGG 0.652355 7_2:-60904225 None:intergenic
GCCTTGCCCTCACATCAAAG+AGG 0.653911 7_2:+60907806 Msa1066770:CDS
TCAAAGCTATGTATGTGACA+AGG 0.659484 7_2:-60907272 None:intergenic
GGTATGATTGGCTAGCGAAG+AGG 0.666042 7_2:+60907094 Msa1066770:intron
ACAATGTAGTTTCACAACCA+AGG 0.675341 7_2:+60904439 Msa1066770:CDS
AGCGAATGCTATGCAGAAGG+GGG 0.677222 7_2:-60906182 None:intergenic
ACTTCTTTACAGGTAGCTCG+CGG 0.677537 7_2:+60906764 Msa1066770:intron
CTTCTGCATAGCATTCGCTG+TGG 0.687281 7_2:+60906186 Msa1066770:CDS
GCGGTATCTTGAGCAGCATG+GGG 0.687520 7_2:-60906811 None:intergenic
ACTTCTGCAACATCGACCTG+TGG 0.688487 7_2:-60905039 None:intergenic
ATGACACTGTAACCACCCCA+AGG 0.695167 7_2:-60906845 None:intergenic
CCCCAAGGATCGAATAAACG+CGG 0.705852 7_2:-60906830 None:intergenic
AGTAGACGAGTAATCTCCCG+CGG 0.729711 7_2:+60907839 Msa1066770:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATATATAGAAATTTA+TGG + chr7_2:60906346-60906365 Msa1066770:intron 10.0%
!! TATATCTTTGTAAAGAAAAA+TGG - chr7_2:60902290-60902309 None:intergenic 15.0%
!!! TTAATAGAATTGATTTCTAT+TGG + chr7_2:60902941-60902960 Msa1066770:intron 15.0%
!! ACTTTCTAATAGTTAATAAA+GGG - chr7_2:60903215-60903234 None:intergenic 15.0%
!! AAAAAAATAAATTACACTAC+AGG - chr7_2:60904567-60904586 None:intergenic 15.0%
!!! AAAATTTAGTATTGGAAAAA+AGG - chr7_2:60904591-60904610 None:intergenic 15.0%
!!! TTTTGTTTTTCTAACAAATT+AGG - chr7_2:60904658-60904677 None:intergenic 15.0%
!!! GTTTTGTATATATTTTTTCA+AGG - chr7_2:60904829-60904848 None:intergenic 15.0%
!!! AATGTTATGTATTTTGTTAA+TGG + chr7_2:60907035-60907054 Msa1066770:intron 15.0%
!! TAACAAATCAAAAAAAATAG+CGG + chr7_2:60907436-60907455 Msa1066770:intron 15.0%
!! ATATACCAAAATTAGCATAA+TGG - chr7_2:60903054-60903073 None:intergenic 20.0%
!!! AAAAAAGAGTAAGTTTTAAG+TGG - chr7_2:60903173-60903192 None:intergenic 20.0%
!!! AGTTAATAAAGGGTAATTTT+TGG - chr7_2:60903205-60903224 None:intergenic 20.0%
!! CACTTTCTAATAGTTAATAA+AGG - chr7_2:60903216-60903235 None:intergenic 20.0%
!! TATTAACTATTAGAAAGTGA+TGG + chr7_2:60903217-60903236 Msa1066770:intron 20.0%
!! AAGAATGAGAAAAATTCTTA+AGG + chr7_2:60903252-60903271 Msa1066770:intron 20.0%
!! TATTATTTATAAGCTTGTCA+AGG - chr7_2:60903513-60903532 None:intergenic 20.0%
!! ATAAAAAGAAGTTAATGTTG+AGG + chr7_2:60903845-60903864 Msa1066770:intron 20.0%
!! AATGTATTCAAAGTTTGAAA+TGG + chr7_2:60903873-60903892 Msa1066770:intron 20.0%
!! TACTCATAGAAAATAGAAAT+AGG - chr7_2:60904015-60904034 None:intergenic 20.0%
!!! TATTTTCTATGAGTATTGAT+AGG + chr7_2:60904020-60904039 Msa1066770:intron 20.0%
!! ATAGAACATACTGAAAAATA+AGG + chr7_2:60904276-60904295 Msa1066770:intron 20.0%
!!! AAATTCTAGAGCTTTTAATA+TGG - chr7_2:60904339-60904358 None:intergenic 20.0%
!! ACAAACTGAAAATTTAGTAT+TGG - chr7_2:60904599-60904618 None:intergenic 20.0%
!!! AATACTAAATTTTCAGTTTG+TGG + chr7_2:60904598-60904617 Msa1066770:intron 20.0%
!!! ATTTTATATCCTTATTTTGC+AGG + chr7_2:60904720-60904739 Msa1066770:intron 20.0%
!! GAAAGAAAACAAACTATTAA+AGG - chr7_2:60905260-60905279 None:intergenic 20.0%
!!! ATTATTTTGGTCATTTATGA+AGG + chr7_2:60905288-60905307 Msa1066770:intron 20.0%
!! TTTATGCTTTACAAACTAAT+GGG + chr7_2:60905485-60905504 Msa1066770:CDS 20.0%
!!! ATATTTTGTAACTTCAAATC+CGG - chr7_2:60905711-60905730 None:intergenic 20.0%
!!! ATAATTTAAAAGTGTCTCAA+AGG + chr7_2:60905737-60905756 Msa1066770:intron 20.0%
!! ATTTATTATTCCAAACACTT+TGG + chr7_2:60905799-60905818 Msa1066770:intron 20.0%
!!! TGTCAATTCAATATCATTTT+GGG - chr7_2:60906064-60906083 None:intergenic 20.0%
!!! ATGTCAATTCAATATCATTT+TGG - chr7_2:60906065-60906084 None:intergenic 20.0%
!!! ATTTTTAATCTTCTCTTTTC+AGG + chr7_2:60906387-60906406 Msa1066770:intron 20.0%
!!! TTTTTAATCTTCTCTTTTCA+GGG + chr7_2:60906388-60906407 Msa1066770:intron 20.0%
!!! AGTGTCTTTATTTGTAAAAT+AGG - chr7_2:60906536-60906555 None:intergenic 20.0%
!!! TTTTACAAATAAAGACACTA+AGG + chr7_2:60906537-60906556 Msa1066770:intron 20.0%
!! AAATCAAACTTTGTATAGAA+TGG - chr7_2:60906707-60906726 None:intergenic 20.0%
!!! TAATTTTCCTTGATTATGTT+TGG + chr7_2:60907205-60907224 Msa1066770:intron 20.0%
!!! TTTTTGAGAAAATTGTTCAT+AGG + chr7_2:60908089-60908108 Msa1066770:three_prime_UTR 20.0%
! AAGAAAAATGGAAAAGATGA+AGG - chr7_2:60902278-60902297 None:intergenic 25.0%
!!! TTTTGATTTGATTTGATGCT+AGG + chr7_2:60902631-60902650 Msa1066770:intron 25.0%
!!! TATTTTTGTGGAAAATTGAG+TGG + chr7_2:60902700-60902719 Msa1066770:intron 25.0%
!! ATTTTTGTGGAAAATTGAGT+GGG + chr7_2:60902701-60902720 Msa1066770:intron 25.0%
! ATACCAGAATGATTTGATTA+AGG + chr7_2:60902912-60902931 Msa1066770:intron 25.0%
!!! TTTGTTTGTTTTTATTTCCC+TGG + chr7_2:60902995-60903014 Msa1066770:intron 25.0%
!! AGATTCCATTATGCTAATTT+TGG + chr7_2:60903046-60903065 Msa1066770:intron 25.0%
! GATTGTTTGGATAAACTAAA+CGG - chr7_2:60903097-60903116 None:intergenic 25.0%
! AAAAATTCTTAAGGTCTGTT+TGG + chr7_2:60903261-60903280 Msa1066770:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr7_2:60903573-60903592 Msa1066770:intron 25.0%
! TCTTTGGATAAACAACTTAA+GGG - chr7_2:60903600-60903619 None:intergenic 25.0%
!!! TCTTGATTAGTCTTCATTAA+TGG + chr7_2:60903809-60903828 Msa1066770:intron 25.0%
!!! TCTTCATTAATGGTTTGTTT+TGG + chr7_2:60903819-60903838 Msa1066770:intron 25.0%
!!! GAAGTATGTATGAGTTTTTT+CGG + chr7_2:60904048-60904067 Msa1066770:intron 25.0%
! AAAGTTCCAATTTCAATTGA+TGG + chr7_2:60904102-60904121 Msa1066770:CDS 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG - chr7_2:60904171-60904190 None:intergenic 25.0%
! AACTAGAATACCTTATTCTT+AGG - chr7_2:60904249-60904268 None:intergenic 25.0%
! CTTTAGCGTTATTTATAATC+AGG - chr7_2:60904499-60904518 None:intergenic 25.0%
! CTGATTATAAATAACGCTAA+AGG + chr7_2:60904497-60904516 Msa1066770:CDS 25.0%
!! AATTTTCAGTTTGTGGTTAT+AGG + chr7_2:60904605-60904624 Msa1066770:intron 25.0%
! AATGAAACCGATATTGATAT+TGG + chr7_2:60904765-60904784 Msa1066770:CDS 25.0%
! AGGTATTCCAATATCAATAT+CGG - chr7_2:60904775-60904794 None:intergenic 25.0%
! GTAATTAATTATGCTTTCCT+TGG + chr7_2:60904897-60904916 Msa1066770:intron 25.0%
!!! AATTTTTTTAAATCTCCCTG+TGG - chr7_2:60904923-60904942 None:intergenic 25.0%
!!! TTACATTTTGATACCTAATC+TGG + chr7_2:60904946-60904965 Msa1066770:intron 25.0%
!!! ATGTTGCAGAAGTATTTTTA+TGG + chr7_2:60905049-60905068 Msa1066770:CDS 25.0%
!!! AGAAGTATTTTTATGGCTTA+TGG + chr7_2:60905056-60905075 Msa1066770:CDS 25.0%
! CGAATAAATTTGACATGAAA+AGG - chr7_2:60905176-60905195 None:intergenic 25.0%
!!! CTTTCTGAGATGAATTATTT+TGG + chr7_2:60905275-60905294 Msa1066770:intron 25.0%
! TATAGATAATTTACCATTGC+AGG + chr7_2:60905355-60905374 Msa1066770:intron 25.0%
! GTTTATGCTTTACAAACTAA+TGG + chr7_2:60905484-60905503 Msa1066770:CDS 25.0%
!! AATTTGAAAACCAAAGTGTT+TGG - chr7_2:60905812-60905831 None:intergenic 25.0%
! AAAATGTTCATAGTTTCAGA+TGG + chr7_2:60906086-60906105 Msa1066770:intron 25.0%
! AAAACATGAACCAAAGAAAA+AGG - chr7_2:60906310-60906329 None:intergenic 25.0%
!!! CTTCATTTTTTTACTCTTTC+TGG + chr7_2:60906479-60906498 Msa1066770:intron 25.0%
!! AGGTATACATTCTTTTTACA+AGG + chr7_2:60906557-60906576 Msa1066770:intron 25.0%
!! ATACATTCTTTTTACAAGGT+TGG + chr7_2:60906561-60906580 Msa1066770:intron 25.0%
! TTTGTATAGAATGGTAGTAA+CGG - chr7_2:60906698-60906717 None:intergenic 25.0%
!! TTTTAGTAGCATTTTCGTTA+AGG + chr7_2:60906897-60906916 Msa1066770:CDS 25.0%
! GTTAAATTGAAAATCTCACA+TGG + chr7_2:60906919-60906938 Msa1066770:intron 25.0%
! ATCCTTGTAACAAAAAAGTT+TGG + chr7_2:60907001-60907020 Msa1066770:intron 25.0%
!! AATACATAACATTCTTTTCC+TGG - chr7_2:60907028-60907047 None:intergenic 25.0%
! ATATACTTTACAGGTATGAT+TGG + chr7_2:60907082-60907101 Msa1066770:intron 25.0%
!! ATGCTATAGTTTTCAATGAT+AGG + chr7_2:60907168-60907187 Msa1066770:intron 25.0%
!!! ATACATAGCTTTGAATTTGA+TGG + chr7_2:60907281-60907300 Msa1066770:CDS 25.0%
! TTTACTAACCAAGTGTAAAT+GGG - chr7_2:60907341-60907360 None:intergenic 25.0%
!! TTTTACTAACCAAGTGTAAA+TGG - chr7_2:60907342-60907361 None:intergenic 25.0%
!!! TTTGATTTGTTATTGACTTC+AGG - chr7_2:60907428-60907447 None:intergenic 25.0%
! TATCGTTAAATAGATAACAC+TGG - chr7_2:60907482-60907501 None:intergenic 25.0%
! ACCTAATAATATGCTTCATA+TGG - chr7_2:60907666-60907685 None:intergenic 25.0%
!!! TATTGTAGGTTTTAGTTTAC+AGG + chr7_2:60907867-60907886 Msa1066770:three_prime_UTR 25.0%
AAAAATGGAAAAGATGAAGG+TGG - chr7_2:60902275-60902294 None:intergenic 30.0%
! TTTGAGGTGTGAAAAGAAAA+GGG - chr7_2:60902336-60902355 None:intergenic 30.0%
! ATTTGAGGTGTGAAAAGAAA+AGG - chr7_2:60902337-60902356 None:intergenic 30.0%
TGATTGTAGATGGAAATTTG+AGG - chr7_2:60902352-60902371 None:intergenic 30.0%
AAGAAGATAGGTGTAAAAGA+AGG - chr7_2:60902401-60902420 None:intergenic 30.0%
!!! TGCTTTGAAATTTTCTTGCT+TGG + chr7_2:60902561-60902580 Msa1066770:intron 30.0%
AAGCCTTAATCAAATCATTC+TGG - chr7_2:60902918-60902937 None:intergenic 30.0%
TTTACCTATTGCAAAAACCA+GGG - chr7_2:60903015-60903034 None:intergenic 30.0%
! TTTTACCTATTGCAAAAACC+AGG - chr7_2:60903016-60903035 None:intergenic 30.0%
TGACAACTTTCATGATTGTT+TGG - chr7_2:60903110-60903129 None:intergenic 30.0%
TAACTATTAGAAAGTGATGG+TGG + chr7_2:60903220-60903239 Msa1066770:intron 30.0%
AACTATTAGAAAGTGATGGT+GGG + chr7_2:60903221-60903240 Msa1066770:intron 30.0%
! CTTATTTCTTTAAGCTCTCT+AGG + chr7_2:60903331-60903350 Msa1066770:intron 30.0%
CTTGTTCTATAAGCGTTAAA+GGG + chr7_2:60903435-60903454 Msa1066770:intron 30.0%
! TGCAATTTTCGTAATCCAAA+CGG - chr7_2:60903462-60903481 None:intergenic 30.0%
GTCTTTGGATAAACAACTTA+AGG - chr7_2:60903601-60903620 None:intergenic 30.0%
GATTTCAGCAAACAACTATA+TGG + chr7_2:60903989-60904008 Msa1066770:intron 30.0%
TAACCTATCGAAAGAAAAAC+CGG - chr7_2:60904083-60904102 None:intergenic 30.0%
TTGTAGCAAACCTAAGAATA+AGG + chr7_2:60904236-60904255 Msa1066770:CDS 30.0%
! CTTGAAATTTTGTTAGCTCA+CGG + chr7_2:60904391-60904410 Msa1066770:intron 30.0%
! TTGAAATTTTGTTAGCTCAC+GGG + chr7_2:60904392-60904411 Msa1066770:intron 30.0%
AGCGTTATTTATAATCAGGA+TGG - chr7_2:60904495-60904514 None:intergenic 30.0%
TTGAAAAGTCCTGCAAAATA+AGG - chr7_2:60904732-60904751 None:intergenic 30.0%
!!! ATATTTTTTCAAGGCTTCAC+CGG - chr7_2:60904820-60904839 None:intergenic 30.0%
TATATACAAAACAAGTCCAC+AGG + chr7_2:60904837-60904856 Msa1066770:CDS 30.0%
ATTTGACATGAAAAGGAACT+AGG - chr7_2:60905169-60905188 None:intergenic 30.0%
CTTCTAAATATAGAGAATGC+TGG + chr7_2:60905392-60905411 Msa1066770:CDS 30.0%
!!! TTTTTTGGAAATAAGCACCA+CGG + chr7_2:60905424-60905443 Msa1066770:CDS 30.0%
TTTACAAACTAATGGGAAGA+TGG + chr7_2:60905492-60905511 Msa1066770:CDS 30.0%
!! AGGTGAGTTATTATTTTTCC+AGG + chr7_2:60905558-60905577 Msa1066770:intron 30.0%
!! AGTTATTATTTTTCCAGGCT+TGG + chr7_2:60905563-60905582 Msa1066770:intron 30.0%
TTTATTCTTTGCATGCTTTC+AGG + chr7_2:60905902-60905921 Msa1066770:intron 30.0%
TTATTCTTTGCATGCTTTCA+GGG + chr7_2:60905903-60905922 Msa1066770:intron 30.0%
CTATACAATGTCAACTTTAC+AGG + chr7_2:60905968-60905987 Msa1066770:intron 30.0%
AGTTTGACCAAAGAAACAAT+GGG - chr7_2:60906287-60906306 None:intergenic 30.0%
!! CTTTGGTTCATGTTTTATAC+TGG + chr7_2:60906314-60906333 Msa1066770:intron 30.0%
TTTGAATAATCATCACCTTG+AGG - chr7_2:60906459-60906478 None:intergenic 30.0%
!!! TTTTTTACTCTTTCTGGCTA+TGG + chr7_2:60906485-60906504 Msa1066770:intron 30.0%
TTGTATAGAATGGTAGTAAC+GGG - chr7_2:60906697-60906716 None:intergenic 30.0%
!!! AGAGTGTAGAGTTTTTTTAG+GGG - chr7_2:60906743-60906762 None:intergenic 30.0%
!!! GAGAGTGTAGAGTTTTTTTA+GGG - chr7_2:60906744-60906763 None:intergenic 30.0%
!!! TGAGAGTGTAGAGTTTTTTT+AGG - chr7_2:60906745-60906764 None:intergenic 30.0%
TAGTTAACATTAGTAGTCCA+AGG - chr7_2:60906955-60906974 None:intergenic 30.0%
!!! GTCCAAACTTTTTTGTTACA+AGG - chr7_2:60907006-60907025 None:intergenic 30.0%
ACTCTGTTGATATACTTTAC+AGG + chr7_2:60907073-60907092 Msa1066770:intron 30.0%
CTGTAATCCAAACATAATCA+AGG - chr7_2:60907215-60907234 None:intergenic 30.0%
!! ATAGCTTTGAATTTGATGGA+TGG + chr7_2:60907285-60907304 Msa1066770:CDS 30.0%
!! TAGCTTTGAATTTGATGGAT+GGG + chr7_2:60907286-60907305 Msa1066770:CDS 30.0%
TATATAGTCCCATTTACACT+TGG + chr7_2:60907330-60907349 Msa1066770:CDS 30.0%
AAGAAACATGGATAAGACTT+GGG - chr7_2:60907627-60907646 None:intergenic 30.0%
TAAGAAACATGGATAAGACT+TGG - chr7_2:60907628-60907647 None:intergenic 30.0%
GCCATATGAAGCATATTATT+AGG + chr7_2:60907662-60907681 Msa1066770:intron 30.0%
AAACATTCTTGTGTATATGC+AGG + chr7_2:60907714-60907733 Msa1066770:intron 30.0%
! AACTTGAGATTTTATGGACA+AGG + chr7_2:60907769-60907788 Msa1066770:CDS 30.0%
! ACTTGAGATTTTATGGACAA+GGG + chr7_2:60907770-60907789 Msa1066770:CDS 30.0%
GGAGACTTATAACAAATCAT+AGG + chr7_2:60907888-60907907 Msa1066770:three_prime_UTR 30.0%
TTGAGGTGTGAAAAGAAAAG+GGG - chr7_2:60902335-60902354 None:intergenic 35.0%
GTGAGAATCTTGATTGTAGA+TGG - chr7_2:60902362-60902381 None:intergenic 35.0%
AACACAGAGAAGAAGAAGAT+AGG - chr7_2:60902413-60902432 None:intergenic 35.0%
! CTTCTTACTTTCTCTTTTGC+TGG + chr7_2:60902440-60902459 Msa1066770:CDS 35.0%
ATGTGACAACAACTTTGTTC+TGG + chr7_2:60902505-60902524 Msa1066770:CDS 35.0%
GCTTGAAATGCTGTTCTTAT+TGG + chr7_2:60902589-60902608 Msa1066770:intron 35.0%
!!! GAAGCTTGTTTTTTGAGCAT+TGG + chr7_2:60902789-60902808 Msa1066770:intron 35.0%
!!! TTTTTTGAGCATTGGATGCT+TGG + chr7_2:60902797-60902816 Msa1066770:intron 35.0%
!! ATTTCCCTGGTTTTTGCAAT+AGG + chr7_2:60903008-60903027 Msa1066770:intron 35.0%
GACTTGATTCTATCTTGTCA+TGG + chr7_2:60903377-60903396 Msa1066770:intron 35.0%
GCTTGTTCTATAAGCGTTAA+AGG + chr7_2:60903434-60903453 Msa1066770:intron 35.0%
! GCAATTTTCGTAATCCAAAC+GGG - chr7_2:60903461-60903480 None:intergenic 35.0%
AAGTCAGTTACTCTAGGTTA+AGG - chr7_2:60903626-60903645 None:intergenic 35.0%
ACAGTTAAGTCAGTTACTCT+AGG - chr7_2:60903632-60903651 None:intergenic 35.0%
TCTCTTGCAGCAATGTAAAA+AGG + chr7_2:60903686-60903705 Msa1066770:intron 35.0%
AAGACTAATCAAGAAGACAG+AGG - chr7_2:60903803-60903822 None:intergenic 35.0%
! AGTTTGAAATGGTGAGAACA+AGG + chr7_2:60903884-60903903 Msa1066770:intron 35.0%
AATCTCTTAGCTTATGTCTC+AGG + chr7_2:60903967-60903986 Msa1066770:intron 35.0%
!! TCCAATTTCAATTGATGGTG+TGG + chr7_2:60904107-60904126 Msa1066770:CDS 35.0%
TCCACACCATCAATTGAAAT+TGG - chr7_2:60904111-60904130 None:intergenic 35.0%
CGTGAGCTAACAAAATTTCA+AGG - chr7_2:60904393-60904412 None:intergenic 35.0%
TTGTGAAACTACATTGTCCT+CGG - chr7_2:60904436-60904455 None:intergenic 35.0%
ACAATGTAGTTTCACAACCA+AGG + chr7_2:60904439-60904458 Msa1066770:CDS 35.0%
TTCTTCAGCTATATTTGCCT+TGG - chr7_2:60904459-60904478 None:intergenic 35.0%
CAGTTTGTGGTTATAGGTTT+CGG + chr7_2:60904611-60904630 Msa1066770:intron 35.0%
!! TTTTGCAGGACTTTTCAAGA+TGG + chr7_2:60904734-60904753 Msa1066770:intron 35.0%
ATGTTTCACTTCTTGTGTGA+AGG + chr7_2:60904861-60904880 Msa1066770:intron 35.0%
! TTTTTATGGCTTATGGCTGT+TGG + chr7_2:60905063-60905082 Msa1066770:CDS 35.0%
TGAGCAAGAGAAGCTATTAA+AGG + chr7_2:60905140-60905159 Msa1066770:CDS 35.0%
TTAAAGGAATCTTCTGTGAG+AGG - chr7_2:60905244-60905263 None:intergenic 35.0%
! GCTTATTTCCAAAAAAGCAC+TGG - chr7_2:60905420-60905439 None:intergenic 35.0%
AAGATGGTTCATTGATGTTC+TGG + chr7_2:60905508-60905527 Msa1066770:CDS 35.0%
TCTTGACATTATGTTAGAGC+AGG + chr7_2:60905630-60905649 Msa1066770:intron 35.0%
! AACGCTAGGATACCAAATTT+TGG - chr7_2:60905661-60905680 None:intergenic 35.0%
!! TATGTGAAAGTACCCTTCTT+CGG + chr7_2:60906130-60906149 Msa1066770:CDS 35.0%
AAGAATATCTTGACCAATCC+AGG - chr7_2:60906242-60906261 None:intergenic 35.0%
! TTGCTTTCCCATTGTTTCTT+TGG + chr7_2:60906277-60906296 Msa1066770:intron 35.0%
GAGTTTGACCAAAGAAACAA+TGG - chr7_2:60906288-60906307 None:intergenic 35.0%
! TGGTCAAACTCCTTTTTCTT+TGG + chr7_2:60906297-60906316 Msa1066770:intron 35.0%
! GGGTATCGCTTTGATAATTA+CGG + chr7_2:60906408-60906427 Msa1066770:intron 35.0%
ATAATCATCACCTTGAGGTT+TGG - chr7_2:60906454-60906473 None:intergenic 35.0%
CTTCCTATATGACATCTTCT+GGG + chr7_2:60906605-60906624 Msa1066770:CDS 35.0%
GTAACAAAAAAGTTTGGACC+AGG + chr7_2:60907007-60907026 Msa1066770:intron 35.0%
CTATAGCATACCTAAACCAT+AGG - chr7_2:60907157-60907176 None:intergenic 35.0%
ACCTGTAGATCAAAATCCAA+GGG - chr7_2:60907250-60907269 None:intergenic 35.0%
TCAAAGCTATGTATGTGACA+AGG - chr7_2:60907275-60907294 None:intergenic 35.0%
AATAGATAACACTGGTGTAG+TGG - chr7_2:60907474-60907493 None:intergenic 35.0%
!!! GTTTAGTGGTTTTAGTGTAG+CGG - chr7_2:60907553-60907572 None:intergenic 35.0%
GTGGGATATAGTAAGAAACA+TGG - chr7_2:60907639-60907658 None:intergenic 35.0%
TATGCTTCATATGGCATAGT+GGG - chr7_2:60907657-60907676 None:intergenic 35.0%
ATATGCTTCATATGGCATAG+TGG - chr7_2:60907658-60907677 None:intergenic 35.0%
CTTCTTTCCCAATGACAAAA+AGG - chr7_2:60907742-60907761 None:intergenic 35.0%
! CTTGAGATTTTATGGACAAG+GGG + chr7_2:60907771-60907790 Msa1066770:CDS 35.0%
! TTGAGATTTTATGGACAAGG+GGG + chr7_2:60907772-60907791 Msa1066770:CDS 35.0%
AAACCTACAATACTATTCCG+CGG - chr7_2:60907859-60907878 None:intergenic 35.0%
CCAAAGTACAAACAGATTCA+TGG - chr7_2:60908050-60908069 None:intergenic 35.0%
CCATGAATCTGTTTGTACTT+TGG + chr7_2:60908047-60908066 Msa1066770:three_prime_UTR 35.0%
AAGAAGAGGAAATCGTGAAG+GGG - chr7_2:60902241-60902260 None:intergenic 40.0%
GAAGAAGAGGAAATCGTGAA+GGG - chr7_2:60902242-60902261 None:intergenic 40.0%
TGGTAGTACAAAGGAAGAAG+AGG - chr7_2:60902255-60902274 None:intergenic 40.0%
AGATGAAGGTGGTAGTACAA+AGG - chr7_2:60902264-60902283 None:intergenic 40.0%
CTTCTTCTTCTCTGTGTTCA+TGG + chr7_2:60902415-60902434 Msa1066770:CDS 40.0%
AGTATTGCTCCTAAGAAACC+TGG + chr7_2:60902482-60902501 Msa1066770:CDS 40.0%
TTGTCACATCCAGGTTTCTT+AGG - chr7_2:60902494-60902513 None:intergenic 40.0%
ACAAAGTTGTTGTCACATCC+AGG - chr7_2:60902503-60902522 None:intergenic 40.0%
!! TCTCAACTGTAGCTGTTTTC+TGG + chr7_2:60903144-60903163 Msa1066770:intron 40.0%
!! GGTCTGTTTGGATTAGCTTA+TGG + chr7_2:60903273-60903292 Msa1066770:intron 40.0%
AAACAACTTAAGGGTCCGTT+TGG - chr7_2:60903591-60903610 None:intergenic 40.0%
AAATGGTGAGAACAAGGTGA+TGG + chr7_2:60903890-60903909 Msa1066770:intron 40.0%
!! CTATGAGTATTGATAGGTCG+TGG + chr7_2:60904026-60904045 Msa1066770:intron 40.0%
!!! GTTTTTTCGGCAGATTTGAC+CGG + chr7_2:60904061-60904080 Msa1066770:intron 40.0%
!! TGACCGGTTTTTCTTTCGAT+AGG + chr7_2:60904077-60904096 Msa1066770:intron 40.0%
!! TCAATTGATGGTGTGGAAAG+CGG + chr7_2:60904114-60904133 Msa1066770:CDS 40.0%
TGCAAGATTTGGACCTACAT+TGG + chr7_2:60904155-60904174 Msa1066770:CDS 40.0%
!! TTAGGTTTGCTACAACAGTC+AGG - chr7_2:60904231-60904250 None:intergenic 40.0%
GCAAATATAGCTGAAGAAGC+TGG + chr7_2:60904461-60904480 Msa1066770:CDS 40.0%
CAAGAAGTGAAACATACCTG+TGG - chr7_2:60904856-60904875 None:intergenic 40.0%
GCAAGACACAAAACCAGATT+AGG - chr7_2:60904962-60904981 None:intergenic 40.0%
TCATCTGAATCATCCTGCAA+TGG - chr7_2:60905371-60905390 None:intergenic 40.0%
ATGGTTCATTGATGTTCTGG+TGG + chr7_2:60905511-60905530 Msa1066770:CDS 40.0%
!! CTGGTGGTTCTGTTTTGTAT+TGG + chr7_2:60905527-60905546 Msa1066770:CDS 40.0%
!! GTGGTTCTGTTTTGTATTGG+TGG + chr7_2:60905530-60905549 Msa1066770:CDS 40.0%
!!! GTTTTGTATTGGTGGTGTTG+AGG + chr7_2:60905538-60905557 Msa1066770:CDS 40.0%
TAATCATCAAGAACCAAGCC+TGG - chr7_2:60905579-60905598 None:intergenic 40.0%
AACTTCAAATCCGGACAGAA+AGG - chr7_2:60905702-60905721 None:intergenic 40.0%
!! GACTTTAGAGCCATTTGCTA+TGG - chr7_2:60905847-60905866 None:intergenic 40.0%
!! AGCAAATGGCTCTAAAGTCA+TGG + chr7_2:60905848-60905867 Msa1066770:intron 40.0%
!! GCAAATGGCTCTAAAGTCAT+GGG + chr7_2:60905849-60905868 Msa1066770:intron 40.0%
TGTCCAAATACCAAACCTCA+AGG + chr7_2:60906441-60906460 Msa1066770:CDS 40.0%
! TCACCTTGAGGTTTGGTATT+TGG - chr7_2:60906447-60906466 None:intergenic 40.0%
!! ACTCTTTCTGGCTATGGATA+TGG + chr7_2:60906491-60906510 Msa1066770:intron 40.0%
CCAGAAGATGTCATATAGGA+AGG - chr7_2:60906607-60906626 None:intergenic 40.0%
CCTTCCTATATGACATCTTC+TGG + chr7_2:60906604-60906623 Msa1066770:CDS 40.0%
ACACCCAGAAGATGTCATAT+AGG - chr7_2:60906611-60906630 None:intergenic 40.0%
CTACACTCTCACTTCTTTAC+AGG + chr7_2:60906754-60906773 Msa1066770:intron 40.0%
! TTCGGGGACATAATTTTACC+AGG + chr7_2:60906872-60906891 Msa1066770:CDS 40.0%
! TCGGGGACATAATTTTACCA+GGG + chr7_2:60906873-60906892 Msa1066770:CDS 40.0%
GAAAATGCTACTAAAAGCCC+TGG - chr7_2:60906893-60906912 None:intergenic 40.0%
CACATGGATCACTTATTCCT+TGG + chr7_2:60906935-60906954 Msa1066770:intron 40.0%
CAAGGATTTGATGTGCACTA+CGG - chr7_2:60906988-60907007 None:intergenic 40.0%
ACAGTTTAAATCCTGTCCCT+TGG + chr7_2:60907231-60907250 Msa1066770:intron 40.0%
TAGATCAAAATCCAAGGGAC+AGG - chr7_2:60907245-60907264 None:intergenic 40.0%
!! TCCCTTGGATTTTGATCTAC+AGG + chr7_2:60907246-60907265 Msa1066770:intron 40.0%
GACCTGTAGATCAAAATCCA+AGG - chr7_2:60907251-60907270 None:intergenic 40.0%
! TTGAATTTGATGGATGGGCA+TGG + chr7_2:60907291-60907310 Msa1066770:CDS 40.0%
! CTTTTTGCGTAGTCAAACAG+CGG - chr7_2:60907587-60907606 None:intergenic 40.0%
GACTTGGGATAAGTTTCACA+AGG - chr7_2:60907612-60907631 None:intergenic 40.0%
! TGCAGGAACCTTTTTGTCAT+TGG + chr7_2:60907731-60907750 Msa1066770:intron 40.0%
! GCAGGAACCTTTTTGTCATT+GGG + chr7_2:60907732-60907751 Msa1066770:intron 40.0%
TTGTCATTGGGAAAGAAGAG+AGG + chr7_2:60907744-60907763 Msa1066770:CDS 40.0%
! GAGGCGAACTTGAGATTTTA+TGG + chr7_2:60907763-60907782 Msa1066770:CDS 40.0%
GATGATCCTCTTTGATGTGA+GGG - chr7_2:60907815-60907834 None:intergenic 40.0%
TGATGATCCTCTTTGATGTG+AGG - chr7_2:60907816-60907835 None:intergenic 40.0%
AACCTACAATACTATTCCGC+GGG - chr7_2:60907858-60907877 None:intergenic 40.0%
CAGCCTAACGATATTGTACA+AGG + chr7_2:60907961-60907980 Msa1066770:three_prime_UTR 40.0%
GTGCCTTGTACAATATCGTT+AGG - chr7_2:60907967-60907986 None:intergenic 40.0%
CCAACATCTAACAGTCAAGA+GGG - chr7_2:60908022-60908041 None:intergenic 40.0%
TCCAACATCTAACAGTCAAG+AGG - chr7_2:60908023-60908042 None:intergenic 40.0%
TCTTGACTGTTAGATGTTGG+AGG + chr7_2:60908022-60908041 Msa1066770:three_prime_UTR 40.0%
GGAAGAAGAGGAAATCGTGA+AGG - chr7_2:60902243-60902262 None:intergenic 45.0%
GGTGTGAAAAGAAAAGGGGT+TGG - chr7_2:60902331-60902350 None:intergenic 45.0%
CTCTAGGTTAAGGTCGTCTT+TGG - chr7_2:60903616-60903635 None:intergenic 45.0%
GTGCAGACACAGAATACACT+AGG + chr7_2:60903739-60903758 Msa1066770:intron 45.0%
! GTTTGCTACAACAGTCAGGA+GGG - chr7_2:60904227-60904246 None:intergenic 45.0%
ATTATGCTTTCCTTGGCCAC+AGG + chr7_2:60904904-60904923 Msa1066770:intron 45.0%
TTATGCTTTCCTTGGCCACA+GGG + chr7_2:60904905-60904924 Msa1066770:intron 45.0%
TTTAAATCTCCCTGTGGCCA+AGG - chr7_2:60904917-60904936 None:intergenic 45.0%
! CCAGTAAGAAGCACAGAGAA+TGG - chr7_2:60905091-60905110 None:intergenic 45.0%
CCATTCTCTGTGCTTCTTAC+TGG + chr7_2:60905088-60905107 Msa1066770:CDS 45.0%
TTGCTCAATAACACCCTCTC+TGG - chr7_2:60905127-60905146 None:intergenic 45.0%
!!! TGCTGGTTCCAGTGCTTTTT+TGG + chr7_2:60905409-60905428 Msa1066770:CDS 45.0%
GAGCAGGCTACACCAAAATT+TGG + chr7_2:60905646-60905665 Msa1066770:intron 45.0%
TTGGTATCCTAGCGTTCAGA+CGG + chr7_2:60905665-60905684 Msa1066770:intron 45.0%
CACATTAGTGCCTTTCTGTC+CGG + chr7_2:60905689-60905708 Msa1066770:intron 45.0%
GTCCTGTCATCCATAGCAAA+TGG + chr7_2:60905834-60905853 Msa1066770:intron 45.0%
!! AGCCATTTGCTATGGATGAC+AGG - chr7_2:60905839-60905858 None:intergenic 45.0%
! TGTGAAACAGCACCGAAGAA+GGG - chr7_2:60906145-60906164 None:intergenic 45.0%
! ATGTGAAACAGCACCGAAGA+AGG - chr7_2:60906146-60906165 None:intergenic 45.0%
ACAGCGAATGCTATGCAGAA+GGG - chr7_2:60906187-60906206 None:intergenic 45.0%
CATAGCATTCGCTGTGGTTT+GGG + chr7_2:60906192-60906211 Msa1066770:CDS 45.0%
ATAGCATTCGCTGTGGTTTG+GGG + chr7_2:60906193-60906212 Msa1066770:CDS 45.0%
CAATCCAGGCATACGATACA+CGG - chr7_2:60906228-60906247 None:intergenic 45.0%
CCACTATCATCACACTCTCA+TGG - chr7_2:60906653-60906672 None:intergenic 45.0%
! CCATGAGAGTGTGATGATAG+TGG + chr7_2:60906650-60906669 Msa1066770:CDS 45.0%
ACTTCTTTACAGGTAGCTCG+CGG + chr7_2:60906764-60906783 Msa1066770:intron 45.0%
GGTGATAAGAGTGGAGAAGA+TGG + chr7_2:60906785-60906804 Msa1066770:CDS 45.0%
TACCGCGTTTATTCGATCCT+TGG + chr7_2:60906828-60906847 Msa1066770:CDS 45.0%
ACCGCGTTTATTCGATCCTT+GGG + chr7_2:60906829-60906848 Msa1066770:CDS 45.0%
!! GGTTACAGTGTCATCGGTTT+CGG + chr7_2:60906854-60906873 Msa1066770:CDS 45.0%
!! GTTACAGTGTCATCGGTTTC+GGG + chr7_2:60906855-60906874 Msa1066770:CDS 45.0%
!! TTACAGTGTCATCGGTTTCG+GGG + chr7_2:60906856-60906875 Msa1066770:CDS 45.0%
!! ACAAGAAGTATCCTGCTCGA+AGG - chr7_2:60907122-60907141 None:intergenic 45.0%
TTCGAGCAGGATACTTCTTG+TGG + chr7_2:60907121-60907140 Msa1066770:CDS 45.0%
ACGATGAGTGCCTATGGTTT+AGG + chr7_2:60907144-60907163 Msa1066770:CDS 45.0%
GGGACTATATACAGCAAAGC+TGG - chr7_2:60907321-60907340 None:intergenic 45.0%
!! ATGTGAGGGCAAGGCATTTT+TGG - chr7_2:60907801-60907820 None:intergenic 45.0%
CCCTCTTGACTGTTAGATGT+TGG + chr7_2:60908019-60908038 Msa1066770:three_prime_UTR 45.0%
!!! AATTTATTTTTATATTTTTG+TGG + chr7_2:60902688-60902707 Msa1066770:intron 5.0%
!!! TTTATTAATATTTTGTAATA+TGG + chr7_2:60904363-60904382 Msa1066770:intron 5.0%
TAAGCGTTAAAGGGCCCGTT+TGG + chr7_2:60903444-60903463 Msa1066770:intron 50.0%
!! GTCGGTGTTGGTGCAAGATT+TGG + chr7_2:60904144-60904163 Msa1066770:CDS 50.0%
CGGCAATGGCAACTCTAGTA+TGG - chr7_2:60904203-60904222 None:intergenic 50.0%
!! GGTTTGCTACAACAGTCAGG+AGG - chr7_2:60904228-60904247 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG + chr7_2:60904416-60904435 Msa1066770:CDS 50.0%
ACTTCTGCAACATCGACCTG+TGG - chr7_2:60905042-60905061 None:intergenic 50.0%
TCTTCTGTGAGAGGACTGTG+AGG - chr7_2:60905235-60905254 None:intergenic 50.0%
!! AACGAATGAAAGTGCTGCCG+TGG - chr7_2:60905444-60905463 None:intergenic 50.0%
AATGTGTCCGTCTGAACGCT+AGG - chr7_2:60905675-60905694 None:intergenic 50.0%
! GGGACTGCAAACTTGCTTAG+TGG + chr7_2:60905923-60905942 Msa1066770:intron 50.0%
AGCGAATGCTATGCAGAAGG+GGG - chr7_2:60906185-60906204 None:intergenic 50.0%
CAGCGAATGCTATGCAGAAG+GGG - chr7_2:60906186-60906205 None:intergenic 50.0%
CACAGCGAATGCTATGCAGA+AGG - chr7_2:60906188-60906207 None:intergenic 50.0%
CTTCTGCATAGCATTCGCTG+TGG + chr7_2:60906186-60906205 Msa1066770:CDS 50.0%
GCATAGCATTCGCTGTGGTT+TGG + chr7_2:60906191-60906210 Msa1066770:CDS 50.0%
CGTGTATCGTATGCCTGGAT+TGG + chr7_2:60906226-60906245 Msa1066770:CDS 50.0%
CCCCAAGGATCGAATAAACG+CGG - chr7_2:60906833-60906852 None:intergenic 50.0%
CCGCGTTTATTCGATCCTTG+GGG + chr7_2:60906830-60906849 Msa1066770:CDS 50.0%
CGTTTATTCGATCCTTGGGG+TGG + chr7_2:60906833-60906852 Msa1066770:CDS 50.0%
ATGACACTGTAACCACCCCA+AGG - chr7_2:60906848-60906867 None:intergenic 50.0%
TGGGGTGGTTACAGTGTCAT+CGG + chr7_2:60906848-60906867 Msa1066770:CDS 50.0%
! GGTATGATTGGCTAGCGAAG+AGG + chr7_2:60907094-60907113 Msa1066770:intron 50.0%
TTGTGGACGATGAGTGCCTA+TGG + chr7_2:60907138-60907157 Msa1066770:CDS 50.0%
CGGCTATCACAGTGGTTTAG+TGG - chr7_2:60907567-60907586 None:intergenic 50.0%
TCAAACAGCGGCTATCACAG+TGG - chr7_2:60907575-60907594 None:intergenic 50.0%
TCCTCTTTGATGTGAGGGCA+AGG - chr7_2:60907810-60907829 None:intergenic 50.0%
AGTAGACGAGTAATCTCCCG+CGG + chr7_2:60907839-60907858 Msa1066770:exon 50.0%
CTCCCGCGGAATAGTATTGT+AGG + chr7_2:60907853-60907872 Msa1066770:three_prime_UTR 50.0%
GTGGAAAGCGGCGAGTATGT+CGG + chr7_2:60904126-60904145 Msa1066770:CDS 55.0%
GCTACAACAGTCAGGAGGGT+CGG - chr7_2:60904223-60904242 None:intergenic 55.0%
! GCTCACGGGCGAGATCATTT+TGG + chr7_2:60904406-60904425 Msa1066770:intron 55.0%
ACCTGCTGTCATGCTTCCAC+TGG + chr7_2:60904791-60904810 Msa1066770:CDS 55.0%
! TCCAGTGGAAGCATGACAGC+AGG - chr7_2:60904795-60904814 None:intergenic 55.0%
GTCATGCTTCCACTGGATGC+CGG + chr7_2:60904798-60904817 Msa1066770:CDS 55.0%
ATACTCTCCACGACGTCCAC+AGG + chr7_2:60905023-60905042 Msa1066770:CDS 55.0%
! GTGCTTCTTACTGGTCTGCC+TGG + chr7_2:60905097-60905116 Msa1066770:CDS 55.0%
AACGCCGTGTATCGTATGCC+TGG + chr7_2:60906221-60906240 Msa1066770:CDS 55.0%
GTAGCTCGCGGTGATAAGAG+TGG + chr7_2:60906776-60906795 Msa1066770:CDS 55.0%
GCGGTATCTTGAGCAGCATG+GGG - chr7_2:60906814-60906833 None:intergenic 55.0%
CGCGGTATCTTGAGCAGCAT+GGG - chr7_2:60906815-60906834 None:intergenic 55.0%
ACGCGGTATCTTGAGCAGCA+TGG - chr7_2:60906816-60906835 None:intergenic 55.0%
GCCTTGCCCTCACATCAAAG+AGG + chr7_2:60907806-60907825 Msa1066770:CDS 55.0%
GCGGGAGATTACTCGTCTAC+TGG - chr7_2:60907840-60907859 None:intergenic 55.0%
AGCGGCGAGTATGTCGGTGT+TGG + chr7_2:60904132-60904151 Msa1066770:CDS 60.0%
ACAGTCAGGAGGGTCGGCAA+TGG - chr7_2:60904217-60904236 None:intergenic 60.0%
AAGGCTTCACCGGCATCCAG+TGG - chr7_2:60904810-60904829 None:intergenic 60.0%
ACATCGACCTGTGGACGTCG+TGG - chr7_2:60905033-60905052 None:intergenic 60.0%
TCTGCCTGGACTGCCAGAGA+GGG + chr7_2:60905111-60905130 Msa1066770:CDS 60.0%
AACACCCTCTCTGGCAGTCC+AGG - chr7_2:60905118-60905137 None:intergenic 60.0%
GCGAAGAGGAACCTTCGAGC+AGG + chr7_2:60907108-60907127 Msa1066770:CDS 60.0%
GTCTGCCTGGACTGCCAGAG+AGG + chr7_2:60905110-60905129 Msa1066770:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 60902195 60908141 60902195 ID=Msa1066770;Name=Msa1066770
chr7_2 mRNA 60902195 60908141 60902195 ID=Msa1066770-mRNA-1;Parent=Msa1066770;Name=Msa1066770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=200|1|1|1|1|1|14|290|537
chr7_2 exon 60902195 60902526 60902195 ID=Msa1066770-mRNA-1:exon:12119;Parent=Msa1066770-mRNA-1
chr7_2 exon 60904099 60904257 60904099 ID=Msa1066770-mRNA-1:exon:12120;Parent=Msa1066770-mRNA-1
chr7_2 exon 60904407 60904518 60904407 ID=Msa1066770-mRNA-1:exon:12121;Parent=Msa1066770-mRNA-1
chr7_2 exon 60904742 60904858 60904742 ID=Msa1066770-mRNA-1:exon:12122;Parent=Msa1066770-mRNA-1
chr7_2 exon 60905010 60905161 60905010 ID=Msa1066770-mRNA-1:exon:12123;Parent=Msa1066770-mRNA-1
chr7_2 exon 60905377 60905559 60905377 ID=Msa1066770-mRNA-1:exon:12124;Parent=Msa1066770-mRNA-1
chr7_2 exon 60905924 60905958 60905924 ID=Msa1066770-mRNA-1:exon:12125;Parent=Msa1066770-mRNA-1
chr7_2 exon 60906099 60906261 60906099 ID=Msa1066770-mRNA-1:exon:12126;Parent=Msa1066770-mRNA-1
chr7_2 exon 60906409 60906462 60906409 ID=Msa1066770-mRNA-1:exon:12127;Parent=Msa1066770-mRNA-1
chr7_2 exon 60906579 60906671 60906579 ID=Msa1066770-mRNA-1:exon:12128;Parent=Msa1066770-mRNA-1
chr7_2 exon 60906776 60906918 60906776 ID=Msa1066770-mRNA-1:exon:12129;Parent=Msa1066770-mRNA-1
chr7_2 exon 60907095 60907165 60907095 ID=Msa1066770-mRNA-1:exon:12130;Parent=Msa1066770-mRNA-1
chr7_2 exon 60907268 60907351 60907268 ID=Msa1066770-mRNA-1:exon:12131;Parent=Msa1066770-mRNA-1
chr7_2 exon 60907736 60908141 60907736 ID=Msa1066770-mRNA-1:exon:12132;Parent=Msa1066770-mRNA-1
chr7_2 five_prime_UTR 60902195 60902394 60902195 ID=Msa1066770-mRNA-1:five_prime_utr;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60902395 60902526 60902395 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60904099 60904257 60904099 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60904407 60904518 60904407 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60904742 60904858 60904742 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60905010 60905161 60905010 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60905377 60905559 60905377 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60905924 60905958 60905924 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60906099 60906261 60906099 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60906409 60906462 60906409 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60906579 60906671 60906579 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60906776 60906918 60906776 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60907095 60907165 60907095 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60907268 60907351 60907268 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 CDS 60907736 60907851 60907736 ID=Msa1066770-mRNA-1:cds;Parent=Msa1066770-mRNA-1
chr7_2 three_prime_UTR 60907852 60908141 60907852 ID=Msa1066770-mRNA-1:three_prime_utr;Parent=Msa1066770-mRNA-1
Gene Sequence

>Msa1066770

ATGCCTTCTTTTACACCTATCTTCTTCTTCTCTGTGTTCATGGTTCTTCTTACTTTCTCTTTTGCTGGTGATATAGTTCATCATGATAGTATTGCTCCTAAGAAACCTGGATGTGACAACAACTTTGTTCTGGTTAAAGTTCCAATTTCAATTGATGGTGTGGAAAGCGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGACCTACATTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCCGACCCTCCTGACTGTTGTAGCAAACCTAAGAATAAGCTCACGGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTGATTATAAATAACGCTAAAGGACTTTTCAAGATGGTTTGTGAAAATGAAACCGATATTGATATTGGAATACCTGCTGTCATGCTTCCACTGGATGCCGGTGAAGCCTTGAAAAAATATATACAAAACAAGTCCACAGTGTCTGTGCAGTTATACTCTCCACGACGTCCACAGGTCGATGTTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCCAGAGAGGGTGTTATTGAGCAAGAGAAGCTATTAAAGGATGATTCAGATGAGCTTCTAAATATAGAGAATGCTGGTTCCAGTGCTTTTTTGGAAATAAGCACCACGGCAGCACTTTCATTCGTTGTGATTGCTTCTTGTTTCTTGTTTATGCTTTACAAACTAATGGGAAGATGGTTCATTGATGTTCTGGTGGTTCTGTTTTGTATTGGTGGTGTTGAGGGACTGCAAACTTGCTTAGTGGCTCTTTTATCACATTTCAGATGGTCTCAACATGCTGCACAAACATATGTGAAAGTACCCTTCTTCGGTGCTGTTTCACATCTCACTCTTGCTGTCACCCCCTTCTGCATAGCATTCGCTGTGGTTTGGGGAGTTGAACGCCGTGTATCGTATGCCTGGATTGGTCAAGATATTCTTGGTATCGCTTTGATAATTACGGTTCTTCAGATTGTCCAAATACCAAACCTCAAGGTTGGAACTGTTCTTCTCAGCTGCGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACTGATTTTCCATGAGAGTGTGATGATAGTGGTAGCTCGCGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCGCGTTTATTCGATCCTTGGGGTGGTTACAGTGTCATCGGTTTCGGGGACATAATTTTACCAGGGCTTTTAGTAGCATTTTCGTTAAGGTATGATTGGCTAGCGAAGAGGAACCTTCGAGCAGGATACTTCTTGTGGACGATGAGTGCCTATGGTTTAGGTCTCCTTGTCACATACATAGCTTTGAATTTGATGGATGGGCATGGTCAACCAGCTTTGCTGTATATAGTCCCATTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGCGAACTTGAGATTTTATGGACAAGGGGGATGCCAAAAATGCCTTGCCCTCACATCAAAGAGGATCATCAACCAGTAGACGAGTAA

Protein sequence

>Msa1066770

MPSFTPIFFFSVFMVLLTFSFAGDIVHHDSIAPKKPGCDNNFVLVKVPISIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINNAKGLFKMVCENETDIDIGIPAVMLPLDAGEALKKYIQNKSTVSVQLYSPRRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGVIEQEKLLKDDSDELLNIENAGSSAFLEISTTAALSFVVIASCFLFMLYKLMGRWFIDVLVVLFCIGGVEGLQTCLVALLSHFRWSQHAAQTYVKVPFFGAVSHLTLAVTPFCIAFAVVWGVERRVSYAWIGQDILGIALIITVLQIVQIPNLKVGTVLLSCAFLYDIFWVFVSKLIFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLLVAFSLRYDWLAKRNLRAGYFLWTMSAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELEILWTRGMPKMPCPHIKEDHQPVDE*