AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233350 MtrunA17_Chr2g0280891 99.329 298 2 0 1 298 1 298 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233350 AT1G28120.1 73.188 276 68 2 23 298 26 295 1.86e-152 429

Find 92 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAGTCAGTTTCAGATTA+TGG 0.229342 2_2:-5680172 Msa0233350:intron
ATATTGCTTTCATGTTTAAA+TGG 0.252148 2_2:-5678934 Msa0233350:three_prime_UTR
TATTCTCTAGGAGCATATTT+TGG 0.256573 2_2:-5681555 Msa0233350:intron
ACCCACAAACGGAAATTTCT+TGG 0.270680 2_2:+5684669 None:intergenic
AATAACAAAGCAACATAAAA+TGG 0.275010 2_2:+5679335 None:intergenic
AAATTACCCCACGCAGATTC+TGG 0.280776 2_2:+5684742 None:intergenic
GCGGAATAAAGAACCGGTTT+TGG 0.300708 2_2:-5684794 Msa0233350:CDS
CATGATTTCACGCCGGTTGC+TGG 0.325738 2_2:-5679652 Msa0233350:CDS
CCTTTAATGCAGGTGCTTGA+TGG 0.327016 2_2:-5681911 Msa0233350:intron
ATCAGGCAGTCCTATATTAC+TGG 0.332456 2_2:-5682045 Msa0233350:CDS
TTTCCTAACATCTTTGCATT+TGG 0.342999 2_2:-5679289 Msa0233350:three_prime_UTR
TATGTTGCTTTGTTATTTGT+TGG 0.343434 2_2:-5679329 Msa0233350:three_prime_UTR
CCAAAGTGAGGATGATCTAT+TGG 0.358729 2_2:-5679541 Msa0233350:exon
GCAGCAGCAATCTTCTATTC+AGG 0.365842 2_2:-5684701 Msa0233350:CDS
ACTCCAAATGCAAAGATGTT+AGG 0.391544 2_2:+5679286 None:intergenic
AACCTGCTCAACTGTTGTAT+TGG 0.402598 2_2:+5679988 None:intergenic
GAAATTTGAATTGGTTTAAG+TGG 0.409110 2_2:-5684823 Msa0233350:five_prime_UTR
GCCAAGAAATTTCCGTTTGT+GGG 0.422209 2_2:-5684670 Msa0233350:CDS
CAGAATCTACGCAGGCTACA+AGG 0.425006 2_2:+5679237 None:intergenic
ATTTCCGTTTGTGGGTGATA+AGG 0.426081 2_2:-5684662 Msa0233350:intron
GTTTAAATGGACGAAATTGT+TGG 0.428156 2_2:-5678921 Msa0233350:three_prime_UTR
TACCGCCCTTTCAGATGCAT+TGG 0.433997 2_2:-5679743 Msa0233350:CDS
TTTAAATGGACGAAATTGTT+GGG 0.436179 2_2:-5678920 Msa0233350:three_prime_UTR
TCAGTTATTCCTTGAGCAGC+TGG 0.445312 2_2:-5680406 Msa0233350:intron
ATCATCCTCACTTTGGATAG+AGG 0.448191 2_2:+5679548 None:intergenic
ATTCAGCTCCACACTGAGCT+TGG 0.450711 2_2:-5679496 Msa0233350:three_prime_UTR
AGCCAAGAAATTTCCGTTTG+TGG 0.451303 2_2:-5684671 Msa0233350:CDS
GATGGAAACTGCTTCTTTCG+AGG 0.453514 2_2:-5681857 Msa0233350:CDS
CTTTAATGCAGGTGCTTGAT+GGG 0.460949 2_2:-5681910 Msa0233350:intron
ACCGCCCTTTCAGATGCATT+GGG 0.465250 2_2:-5679742 Msa0233350:CDS
TAGAAAAGCACTTCAGACCT+TGG 0.469580 2_2:-5681480 Msa0233350:CDS
CCAATAGATCATCCTCACTT+TGG 0.471036 2_2:+5679541 None:intergenic
AGAAAAGCACTTCAGACCTT+GGG 0.475463 2_2:-5681479 Msa0233350:CDS
ACGATATAGTAATGTGATGA+AGG 0.477093 2_2:+5679588 None:intergenic
TATATTACTGGAGAAAATCA+AGG 0.477418 2_2:-5682033 Msa0233350:intron
GACCGTAGCTCATGTGATAC+TGG 0.477717 2_2:-5679694 Msa0233350:CDS
TCAAGATACACAACACGGAT+TGG 0.481206 2_2:+5679715 None:intergenic
CTTGGGAGATCACCAGCAAC+CGG 0.484670 2_2:+5679640 None:intergenic
CAAATCAGCTGTTGAGCCAA+TGG 0.487126 2_2:-5679791 Msa0233350:CDS
GATTATTAATGCACTAATGT+CGG 0.487838 2_2:+5679366 None:intergenic
ACTGAGCTTGGTTGTTAATG+AGG 0.497760 2_2:-5679484 Msa0233350:three_prime_UTR
AACCAATACAACAGTTGAGC+AGG 0.497886 2_2:-5679990 Msa0233350:intron
TCAGAGCTACCACTAGCACT+TGG 0.502096 2_2:+5679622 None:intergenic
TTGGCTGCTGAATATCAATC+AGG 0.505721 2_2:-5682062 Msa0233350:CDS
AAATCAGCTGTTGAGCCAAT+GGG 0.508018 2_2:-5679790 Msa0233350:CDS
CAGCTGGAAGACGTTATTCA+AGG 0.512483 2_2:-5680390 Msa0233350:CDS
ATTCGGCGTACTCGTGGAGA+TGG 0.513061 2_2:-5681875 Msa0233350:CDS
ATGGGCAATATGCTGCCATT+CGG 0.513520 2_2:-5681892 Msa0233350:CDS
ACTTCCCCATCATCCAAAAC+CGG 0.521167 2_2:+5684781 None:intergenic
TCAGCAGCCAAGCTAGATAG+TGG 0.526345 2_2:+5682074 None:intergenic
AGAATCTACGCAGGCTACAA+GGG 0.530193 2_2:+5679238 None:intergenic
TGGTCGCTCTCTTCTCCCAT+TGG 0.541430 2_2:+5679775 None:intergenic
TTGGTTAAGCCCATAATGAA+AGG 0.547596 2_2:+5680007 None:intergenic
TGATGGGGAAGTAGAGTATG+AGG 0.548779 2_2:-5684770 Msa0233350:CDS
GCAGGAACCACTATCTAGCT+TGG 0.550864 2_2:-5682081 Msa0233350:intron
GCTGCCATTCGGCGTACTCG+TGG 0.551041 2_2:-5681881 Msa0233350:CDS
GGAGTTAATGAGTTCTGTGA+GGG 0.553827 2_2:-5679268 Msa0233350:three_prime_UTR
TAATGAGTTCTGTGAGGGCA+TGG 0.558218 2_2:-5679263 Msa0233350:three_prime_UTR
AAGGGAAAGAGACGTCCATA+AGG 0.560633 2_2:-5680371 Msa0233350:intron
CTGAGCTTGGTTGTTAATGA+GGG 0.563049 2_2:-5679483 Msa0233350:three_prime_UTR
TAACGTCTTCCAGCTGCTCA+AGG 0.563282 2_2:+5680397 None:intergenic
CAGAGCTACCACTAGCACTT+GGG 0.563915 2_2:+5679623 None:intergenic
GGCTGGTCCAGAATCTGCGT+GGG 0.566158 2_2:-5684749 Msa0233350:CDS
GGTGATCTCCCAAGTGCTAG+TGG 0.566956 2_2:-5679631 Msa0233350:CDS
AATGCCCAATGCATCTGAAA+GGG 0.567632 2_2:+5679738 None:intergenic
GAATGCCCAATGCATCTGAA+AGG 0.571708 2_2:+5679737 None:intergenic
CTTACCTTATCACCCACAAA+CGG 0.573186 2_2:+5684658 None:intergenic
ATCACATTACTATATCGTCC+TGG 0.585998 2_2:-5679583 Msa0233350:CDS
CGATATAGTAATGTGATGAA+GGG 0.586075 2_2:+5679589 None:intergenic
CACCAGTATCACATGAGCTA+CGG 0.599499 2_2:+5679692 None:intergenic
AGCTGGAAGACGTTATTCAA+GGG 0.602756 2_2:-5680389 Msa0233350:CDS
GGGGAAGTAGAGTATGAGGC+TGG 0.604667 2_2:-5684766 Msa0233350:CDS
AGTCAATTCTGCATAACCCA+AGG 0.624232 2_2:+5681463 None:intergenic
ATCTCCACGAGTACGCCGAA+TGG 0.624749 2_2:+5681877 None:intergenic
GCCCAATGCATCTGAAAGGG+CGG 0.633230 2_2:+5679741 None:intergenic
TAGCTTGCGATTTCGATCGA+AGG 0.634318 2_2:-5685135 Msa0233350:intron
GATATCCTCTATCCAAAGTG+AGG 0.635051 2_2:-5679553 Msa0233350:exon
GAATCTACGCAGGCTACAAG+GGG 0.635740 2_2:+5679239 None:intergenic
AGGCTGGTCCAGAATCTGCG+TGG 0.639324 2_2:-5684750 Msa0233350:CDS
TCATTCTGCAGAATCTACGC+AGG 0.639329 2_2:+5679229 None:intergenic
AAAGGGCGGTAATGTGAACA+TGG 0.647398 2_2:+5679755 None:intergenic
ATTATATGATCACAGTCATG+AGG 0.653815 2_2:-5680215 Msa0233350:intron
TTGCTCTTCACTCTCTCACA+CGG 0.656347 2_2:-5685158 Msa0233350:five_prime_UTR
TAGAGGATATCATAGTGACC+AGG 0.664906 2_2:+5679565 None:intergenic
TGGAGTTAATGAGTTCTGTG+AGG 0.679501 2_2:-5679269 Msa0233350:three_prime_UTR
ATTAACAACCAAGCTCAGTG+TGG 0.695543 2_2:+5679488 None:intergenic
AAATCATCATGATTTCACGC+CGG 0.709072 2_2:-5679659 Msa0233350:CDS
CGTAGCTCATGTGATACTGG+TGG 0.709600 2_2:-5679691 Msa0233350:CDS
GCTGGTCCAGAATCTGCGTG+GGG 0.726249 2_2:-5684748 Msa0233350:CDS
TACGGTCAAGATACACAACA+CGG 0.736056 2_2:+5679710 None:intergenic
AAATGCGCAGACATGCAATG+CGG 0.756758 2_2:+5679176 None:intergenic
AATCTACGCAGGCTACAAGG+GGG 0.769048 2_2:+5679240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATCTTTTGAATTTAAA+AGG + chr2_2:5680539-5680558 None:intergenic 10.0%
!!! AATAAATTAATCTAAAGTTA+TGG - chr2_2:5680697-5680716 Msa0233350:intron 10.0%
!!! ATTATTTCATTAATGTTTTT+TGG + chr2_2:5681205-5681224 None:intergenic 10.0%
!! AATTATAATATTCTTAAATG+AGG + chr2_2:5683631-5683650 None:intergenic 10.0%
!! ATTATTATTATTATCTTTGC+AGG - chr2_2:5679187-5679206 Msa0233350:three_prime_UTR 15.0%
!!! AATGTATGTTTTGTATTTTA+AGG - chr2_2:5679785-5679804 Msa0233350:CDS 15.0%
!!! TTATTATTCCATTAACTTTT+TGG - chr2_2:5679963-5679982 Msa0233350:intron 15.0%
!! ATTATATACCAAAAAGTTAA+TGG + chr2_2:5679974-5679993 None:intergenic 15.0%
!!! GTACTTTTTGTATTTAATAT+GGG + chr2_2:5680517-5680536 None:intergenic 15.0%
!!! TTTTATATGTGTATATCAAA+GGG + chr2_2:5680769-5680788 None:intergenic 15.0%
!! AATAAGATAGAGTTAATTTA+TGG + chr2_2:5682507-5682526 None:intergenic 15.0%
!!! GAATTTTTTATAAGATTAGT+GGG + chr2_2:5682755-5682774 None:intergenic 15.0%
!!! AGAATTTTTTATAAGATTAG+TGG + chr2_2:5682756-5682775 None:intergenic 15.0%
!! AAAAAATCTATCGAGAATTT+AGG - chr2_2:5678882-5678901 Msa0233350:three_prime_UTR 20.0%
!! AAAAATCTATCGAGAATTTA+GGG - chr2_2:5678883-5678902 Msa0233350:three_prime_UTR 20.0%
!! AACAATTCAACAAAAATTGA+AGG + chr2_2:5679058-5679077 None:intergenic 20.0%
!! GTAAAAAGTGAAATTTGAAT+TGG - chr2_2:5679246-5679265 Msa0233350:three_prime_UTR 20.0%
!! TTTGATGAAAAAACTATTTG+AGG - chr2_2:5679518-5679537 Msa0233350:three_prime_UTR 20.0%
!! CAAAACATACATTTAATAGA+AGG + chr2_2:5679778-5679797 None:intergenic 20.0%
!!! TAGGTAATCAACATATTTTT+AGG - chr2_2:5680409-5680428 Msa0233350:intron 20.0%
!!! GGTACTTTTTGTATTTAATA+TGG + chr2_2:5680518-5680537 None:intergenic 20.0%
!!! TTTTCTATTCTAATACTTAC+AGG - chr2_2:5680556-5680575 Msa0233350:intron 20.0%
!!! GTTTTATATGTGTATATCAA+AGG + chr2_2:5680770-5680789 None:intergenic 20.0%
!! TTTAACATCAATATTGAACT+GGG - chr2_2:5680871-5680890 Msa0233350:intron 20.0%
!! GTCTTTATCAACATTTAATT+TGG - chr2_2:5681236-5681255 Msa0233350:intron 20.0%
!! TGATTGTACATACATAAATT+AGG + chr2_2:5681636-5681655 None:intergenic 20.0%
!! ATTTATTTGAAGAGAGAAAA+AGG - chr2_2:5681694-5681713 Msa0233350:intron 20.0%
!! TTTATTTGAAGAGAGAAAAA+GGG - chr2_2:5681695-5681714 Msa0233350:intron 20.0%
!!! CAGAATTTGTTAAACTAAAA+TGG - chr2_2:5681854-5681873 Msa0233350:CDS 20.0%
!! ATTCAAGAAACATGAAAATA+TGG + chr2_2:5682134-5682153 None:intergenic 20.0%
!! ACATAACAATAAAACATACA+AGG + chr2_2:5682262-5682281 None:intergenic 20.0%
!! ATGTAACAATAAATCATTGA+AGG + chr2_2:5682356-5682375 None:intergenic 20.0%
!!! AATTTATGGACTGAAATTAT+TGG + chr2_2:5682493-5682512 None:intergenic 20.0%
!!! GACTTTTGAAGATTTTTTTA+CGG - chr2_2:5682634-5682653 Msa0233350:intron 20.0%
!! ATAAAAAATTCTCCAAACAT+AGG - chr2_2:5682764-5682783 Msa0233350:intron 20.0%
!!! TTAATAGTGGATTATCATTT+TGG - chr2_2:5683138-5683157 Msa0233350:intron 20.0%
!! CTACAGTAGTAAAAAAATTA+AGG - chr2_2:5683200-5683219 Msa0233350:intron 20.0%
!! TCATACAACAGAAAAAATAT+AGG - chr2_2:5683413-5683432 Msa0233350:intron 20.0%
!! TAACAAAGGTTTCTATTTAA+TGG - chr2_2:5683438-5683457 Msa0233350:intron 20.0%
!!! TTTTTAAAAATGCTGTGAAT+TGG - chr2_2:5683551-5683570 Msa0233350:intron 20.0%
!!! ATTTTTTGAACCTTTCATTA+TGG - chr2_2:5684061-5684080 Msa0233350:intron 20.0%
!!! TTTTTTGAACCTTTCATTAT+GGG - chr2_2:5684062-5684081 Msa0233350:intron 20.0%
!! AATAACAAAGCAACATAAAA+TGG + chr2_2:5684746-5684765 None:intergenic 20.0%
!! ATATTGCTTTCATGTTTAAA+TGG - chr2_2:5685144-5685163 Msa0233350:five_prime_UTR 20.0%
!! TTCAACGCAATTTTATGATT+CGG - chr2_2:5679146-5679165 Msa0233350:intron 25.0%
!! GAAATTTGAATTGGTTTAAG+TGG - chr2_2:5679255-5679274 Msa0233350:three_prime_UTR 25.0%
! CTTCATTATCTAGTCATTTA+GGG - chr2_2:5679477-5679496 Msa0233350:three_prime_UTR 25.0%
!! AAGCTAATTCAAGTTACTTA+AGG + chr2_2:5679589-5679608 None:intergenic 25.0%
!!! TTTTAAGGTATACTTACAAG+TGG - chr2_2:5679800-5679819 Msa0233350:intron 25.0%
! AATATTTAATGTGTGTGATC+CGG + chr2_2:5679909-5679928 None:intergenic 25.0%
!!! CATTAGGTTTTTGAGTAATT+GGG + chr2_2:5680201-5680220 None:intergenic 25.0%
! TTTGATGTCAATATTGAACT+AGG + chr2_2:5680308-5680327 None:intergenic 25.0%
!!! TCAACATATTTTTAGGAACA+CGG - chr2_2:5680416-5680435 Msa0233350:intron 25.0%
!! AAACGTTAGTGATGTTTTAT+AGG - chr2_2:5680618-5680637 Msa0233350:intron 25.0%
! TTCAATATTGATGTTAAAGG+TGG + chr2_2:5680869-5680888 None:intergenic 25.0%
! CAGTTCAATATTGATGTTAA+AGG + chr2_2:5680872-5680891 None:intergenic 25.0%
! CTTTAACATCAATATTGAAC+TGG - chr2_2:5680870-5680889 Msa0233350:intron 25.0%
!!! TTTTAAGGTATACTTATACG+TGG + chr2_2:5681379-5681398 None:intergenic 25.0%
!! ATCAGGTGATTAGTATTTTA+AGG + chr2_2:5681394-5681413 None:intergenic 25.0%
! CATAAATAGATTTGGATTCT+TGG + chr2_2:5681445-5681464 None:intergenic 25.0%
! TACACGTACATAAATAGATT+TGG + chr2_2:5681453-5681472 None:intergenic 25.0%
! TGTACATACATAAATTAGGA+TGG + chr2_2:5681632-5681651 None:intergenic 25.0%
! ATCACAAAAAAACTAGACTT+TGG - chr2_2:5681656-5681675 Msa0233350:intron 25.0%
! TTATTTGAAGAGAGAAAAAG+GGG - chr2_2:5681696-5681715 Msa0233350:intron 25.0%
!!! TTTTGTTTGATACTTATGCA+TGG - chr2_2:5681721-5681740 Msa0233350:intron 25.0%
! AGAAATGATTGAAAGAACAA+AGG - chr2_2:5681951-5681970 Msa0233350:intron 25.0%
!! TTGATTTTCTCCAGTAATAT+AGG + chr2_2:5682046-5682065 None:intergenic 25.0%
! TATATTACTGGAGAAAATCA+AGG - chr2_2:5682045-5682064 Msa0233350:CDS 25.0%
! CAAAAGGAAATAGAGATAAA+AGG + chr2_2:5682084-5682103 None:intergenic 25.0%
! TGGAAACAATAAAACATACA+AGG + chr2_2:5682386-5682405 None:intergenic 25.0%
! TAGAGAATATGCAATTAAAC+TGG + chr2_2:5682406-5682425 None:intergenic 25.0%
! TTAACTCTATCTTATTCTCT+AGG - chr2_2:5682511-5682530 Msa0233350:intron 25.0%
! AATAAATTCACCATAGTTCA+AGG + chr2_2:5682963-5682982 None:intergenic 25.0%
! TAAAGAAAGTGACATGAAAT+TGG + chr2_2:5683095-5683114 None:intergenic 25.0%
! TCCACTATTAAAACTTGAAA+GGG + chr2_2:5683129-5683148 None:intergenic 25.0%
! ATCCACTATTAAAACTTGAA+AGG + chr2_2:5683130-5683149 None:intergenic 25.0%
!!! TTTTTTACTACTGTAGTTCT+TGG + chr2_2:5683196-5683215 None:intergenic 25.0%
! TCTTGATTGTTCAAAAAAGT+TGG - chr2_2:5683386-5683405 Msa0233350:intron 25.0%
! AAAAAATATAGGCGTAACAA+AGG - chr2_2:5683424-5683443 Msa0233350:intron 25.0%
! TATAGTTCTTCTATTAGTGT+TGG - chr2_2:5683485-5683504 Msa0233350:intron 25.0%
! AAAATAAAGCAACATGTTTG+TGG + chr2_2:5683527-5683546 None:intergenic 25.0%
! TCAATGAAAATTCTTAGTGA+AGG + chr2_2:5683745-5683764 None:intergenic 25.0%
!! TTTCATTGACAATTTTGAAC+TGG - chr2_2:5683756-5683775 Msa0233350:intron 25.0%
! AAACAGTTTGTCAAGAAAAA+TGG + chr2_2:5683982-5684001 None:intergenic 25.0%
! CTAACTTTAAACTCAACATT+TGG + chr2_2:5684147-5684166 None:intergenic 25.0%
!! CAAATGTTGAGTTTAAAGTT+AGG - chr2_2:5684145-5684164 Msa0233350:intron 25.0%
! GATTATTAATGCACTAATGT+CGG + chr2_2:5684715-5684734 None:intergenic 25.0%
!!! TATGTTGCTTTGTTATTTGT+TGG - chr2_2:5684749-5684768 Msa0233350:CDS 25.0%
!!! AACATAACGGAGTAAAATTT+TGG - chr2_2:5685016-5685035 Msa0233350:intron 25.0%
! TTTAAATGGACGAAATTGTT+GGG - chr2_2:5685158-5685177 Msa0233350:five_prime_UTR 25.0%
AAAGAAAAGGATGCAAAGAA+GGG + chr2_2:5678976-5678995 None:intergenic 30.0%
TTGGTTTAAGTGGAAAAATG+CGG - chr2_2:5679265-5679284 Msa0233350:three_prime_UTR 30.0%
AAAAATGCGGAATAAAGAAC+CGG - chr2_2:5679278-5679297 Msa0233350:three_prime_UTR 30.0%
CCTAAATGACTAGATAATGA+AGG + chr2_2:5679479-5679498 None:intergenic 30.0%
CCTTCATTATCTAGTCATTT+AGG - chr2_2:5679476-5679495 Msa0233350:three_prime_UTR 30.0%
! TATTTGAGGCAAGTGATAAT+AGG - chr2_2:5679532-5679551 Msa0233350:three_prime_UTR 30.0%
! ATTTGAGGCAAGTGATAATA+GGG - chr2_2:5679533-5679552 Msa0233350:three_prime_UTR 30.0%
TGATAATAGGGGTAAAATTG+AGG - chr2_2:5679545-5679564 Msa0233350:exon 30.0%
GATAATAGGGGTAAAATTGA+GGG - chr2_2:5679546-5679565 Msa0233350:exon 30.0%
ATAAGCTTGTGAGATAATCA+TGG - chr2_2:5679648-5679667 Msa0233350:CDS 30.0%
ATCAAGCAAATTAAAGGCAA+TGG + chr2_2:5679745-5679764 None:intergenic 30.0%
CATTTAATAGAAGGTTGCAT+GGG + chr2_2:5679769-5679788 None:intergenic 30.0%
ACATTTAATAGAAGGTTGCA+TGG + chr2_2:5679770-5679789 None:intergenic 30.0%
! GGATTTGGTCAAAATAGAAT+AGG - chr2_2:5679821-5679840 Msa0233350:intron 30.0%
! TTATATTACCCCTTTTCAAC+CGG - chr2_2:5679887-5679906 Msa0233350:intron 30.0%
!! TATTGATTCCTAAAGACTGA+TGG - chr2_2:5679925-5679944 Msa0233350:intron 30.0%
! ATTGATTCCTAAAGACTGAT+GGG - chr2_2:5679926-5679945 Msa0233350:intron 30.0%
TATGGTTATCTCTTTGAACA+AGG - chr2_2:5680026-5680045 Msa0233350:CDS 30.0%
ATGGTTATCTCTTTGAACAA+GGG - chr2_2:5680027-5680046 Msa0233350:CDS 30.0%
TATCTCAAAATAAGCAACAC+AGG + chr2_2:5680106-5680125 None:intergenic 30.0%
!!! CCATTAGGTTTTTGAGTAAT+TGG + chr2_2:5680202-5680221 None:intergenic 30.0%
CCAATTACTCAAAAACCTAA+TGG - chr2_2:5680199-5680218 Msa0233350:CDS 30.0%
!! CTCAAGTCAAAGTATTTTTG+TGG + chr2_2:5680241-5680260 None:intergenic 30.0%
!! AAAAATACTTTGACTTGAGC+AGG - chr2_2:5680242-5680261 Msa0233350:intron 30.0%
ATATTGACATCAAAAAGCTG+TGG - chr2_2:5680314-5680333 Msa0233350:intron 30.0%
GTTAATATTCTTAGGTAAGC+AGG + chr2_2:5680489-5680508 None:intergenic 30.0%
CCAAAACCATCAAAAAGTAA+GGG + chr2_2:5680585-5680604 None:intergenic 30.0%
ACCAAAACCATCAAAAAGTA+AGG + chr2_2:5680586-5680605 None:intergenic 30.0%
TTTATAGGTCGAAAACTGAT+TGG - chr2_2:5680633-5680652 Msa0233350:intron 30.0%
TTATAGGTCGAAAACTGATT+GGG - chr2_2:5680634-5680653 Msa0233350:intron 30.0%
AATATTGATGTTAAAGGTGG+TGG + chr2_2:5680866-5680885 None:intergenic 30.0%
! CTATTGCCATTTACCAAATA+GGG + chr2_2:5680902-5680921 None:intergenic 30.0%
ATTCTGTCAACAATCTGTAA+TGG + chr2_2:5681055-5681074 None:intergenic 30.0%
AACAATGGTTGTTATAGTTG+TGG + chr2_2:5681083-5681102 None:intergenic 30.0%
! AACTATGTGACTATCACTTT+TGG + chr2_2:5681484-5681503 None:intergenic 30.0%
!!! TCTTTGGGATTTTTTCACTA+GGG - chr2_2:5681902-5681921 Msa0233350:CDS 30.0%
GATTGAAAGAACAAAGGTTA+AGG - chr2_2:5681957-5681976 Msa0233350:intron 30.0%
TAAGGTTTCTTGTGGTAAAT+TGG - chr2_2:5681975-5681994 Msa0233350:intron 30.0%
TGAAACAATATGACATGACA+TGG + chr2_2:5682109-5682128 None:intergenic 30.0%
CTGAAATTATTGGAATTGGA+AGG + chr2_2:5682483-5682502 None:intergenic 30.0%
TGGACTGAAATTATTGGAAT+TGG + chr2_2:5682487-5682506 None:intergenic 30.0%
!! TATTCTCTAGGAGCATATTT+TGG - chr2_2:5682523-5682542 Msa0233350:intron 30.0%
! TTTTCTACTTCTCTCAACAT+TGG + chr2_2:5682585-5682604 None:intergenic 30.0%
!! ATTAGTGGGTACATTCATTT+TGG + chr2_2:5682741-5682760 None:intergenic 30.0%
AAACACAATATGCCTATGTT+TGG + chr2_2:5682779-5682798 None:intergenic 30.0%
AAACATAGGCATATTGTGTT+TGG - chr2_2:5682778-5682797 Msa0233350:intron 30.0%
AACATAGGCATATTGTGTTT+GGG - chr2_2:5682779-5682798 Msa0233350:intron 30.0%
! TTGAATAGATTTTCCAGCTA+TGG - chr2_2:5682909-5682928 Msa0233350:intron 30.0%
ACAAATCAAAATTCCATAGC+TGG + chr2_2:5682925-5682944 None:intergenic 30.0%
TACTCGTAATTATCAAGTCA+TGG - chr2_2:5683052-5683071 Msa0233350:intron 30.0%
ATGAAATTGGAGATGATACA+GGG + chr2_2:5683082-5683101 None:intergenic 30.0%
!!! TCCCTTTCAAGTTTTAATAG+TGG - chr2_2:5683125-5683144 Msa0233350:intron 30.0%
! TTATAGGGTGTATTTTGTAG+TGG - chr2_2:5683290-5683309 Msa0233350:intron 30.0%
TTCTATTTAATGGAACCATG+TGG - chr2_2:5683448-5683467 Msa0233350:intron 30.0%
ATAGAATTAGTACTCTGCAT+GGG + chr2_2:5683587-5683606 None:intergenic 30.0%
TATAGAATTAGTACTCTGCA+TGG + chr2_2:5683588-5683607 None:intergenic 30.0%
ATTATATGATCACAGTCATG+AGG - chr2_2:5683863-5683882 Msa0233350:intron 30.0%
GAAATGAGATCAAGACATTT+GGG + chr2_2:5683957-5683976 None:intergenic 30.0%
AGAAATGAGATCAAGACATT+TGG + chr2_2:5683958-5683977 None:intergenic 30.0%
CTTTAAACTCAACATTTGGA+GGG + chr2_2:5684143-5684162 None:intergenic 30.0%
ACTTTAAACTCAACATTTGG+AGG + chr2_2:5684144-5684163 None:intergenic 30.0%
! GGTTTTCTGCAATAACATAA+TGG + chr2_2:5684196-5684215 None:intergenic 30.0%
ATTGCAGAAAACCTTGTATA+TGG - chr2_2:5684203-5684222 Msa0233350:intron 30.0%
GATGACTATATCCATATACA+AGG + chr2_2:5684217-5684236 None:intergenic 30.0%
CGATATAGTAATGTGATGAA+GGG + chr2_2:5684492-5684511 None:intergenic 30.0%
ACGATATAGTAATGTGATGA+AGG + chr2_2:5684493-5684512 None:intergenic 30.0%
TTTCCTAACATCTTTGCATT+TGG - chr2_2:5684789-5684808 Msa0233350:CDS 30.0%
TGCAACAATAATAGTAATGC+AGG - chr2_2:5684927-5684946 Msa0233350:intron 30.0%
! ATGGCCAAAATTTTGAATAC+AGG - chr2_2:5684970-5684989 Msa0233350:intron 30.0%
! GATGCCTGTATTCAAAATTT+TGG + chr2_2:5684977-5684996 None:intergenic 30.0%
GTTTAAATGGACGAAATTGT+TGG - chr2_2:5685157-5685176 Msa0233350:five_prime_UTR 30.0%
! CCTTCTTTTTGTACAAAAGA+GGG + chr2_2:5685190-5685209 None:intergenic 30.0%
! CCTCTTTTGTACAAAAAGAA+GGG - chr2_2:5685188-5685207 Msa0233350:five_prime_UTR 30.0%
ATGCAAAAAGCTAAACGCAA+TGG + chr2_2:5678858-5678877 None:intergenic 35.0%
GAAAGAAAAGGATGCAAAGA+AGG + chr2_2:5678977-5678996 None:intergenic 35.0%
TTTGCGCATTGAGAAAGAAA+AGG + chr2_2:5678989-5679008 None:intergenic 35.0%
CAAAGAGTTCATACGATGTA+GGG + chr2_2:5679447-5679466 None:intergenic 35.0%
! TTTGAGGCAAGTGATAATAG+GGG - chr2_2:5679534-5679553 Msa0233350:three_prime_UTR 35.0%
ACGACTTAGGGTTTAGTATT+TGG + chr2_2:5679718-5679737 None:intergenic 35.0%
ATGGGCATCAAGCAAATTAA+AGG + chr2_2:5679751-5679770 None:intergenic 35.0%
! GGTATACTTACAAGTGGATT+TGG - chr2_2:5679806-5679825 Msa0233350:intron 35.0%
AAAAACACCCATCAGTCTTT+AGG + chr2_2:5679936-5679955 None:intergenic 35.0%
ATATATTGTACGTATGCACG+AGG - chr2_2:5679992-5680011 Msa0233350:CDS 35.0%
TATATTGTACGTATGCACGA+GGG - chr2_2:5679993-5680012 Msa0233350:CDS 35.0%
TATCTCTTTGAACAAGGGTA+TGG - chr2_2:5680032-5680051 Msa0233350:CDS 35.0%
!!! TAGGTTTTTGAGTAATTGGG+AGG + chr2_2:5680198-5680217 None:intergenic 35.0%
CTCAAAAACCTAATGGCAAT+TGG - chr2_2:5680206-5680225 Msa0233350:intron 35.0%
CTATTACCATTTACCAAGCA+TGG - chr2_2:5680278-5680297 Msa0233350:intron 35.0%
GAATGCAGTTTCAGATTCTT+AGG - chr2_2:5680390-5680409 Msa0233350:CDS 35.0%
GGGTTGCAGTTAATATTCTT+AGG + chr2_2:5680497-5680516 None:intergenic 35.0%
!!! AGGAAACCCTTACTTTTTGA+TGG - chr2_2:5680576-5680595 Msa0233350:intron 35.0%
!!! CCCTTACTTTTTGATGGTTT+TGG - chr2_2:5680582-5680601 Msa0233350:intron 35.0%
! CAAAGGGTCTAAAACTGATT+GGG + chr2_2:5680753-5680772 None:intergenic 35.0%
! TCAAAGGGTCTAAAACTGAT+TGG + chr2_2:5680754-5680773 None:intergenic 35.0%
GATGATCCCTATTTGGTAAA+TGG - chr2_2:5680893-5680912 Msa0233350:intron 35.0%
! CCTATTGCCATTTACCAAAT+AGG + chr2_2:5680903-5680922 None:intergenic 35.0%
CCTATTTGGTAAATGGCAAT+AGG - chr2_2:5680900-5680919 Msa0233350:intron 35.0%
! CTCAAGTCTAAGTGTTTTTC+TGG - chr2_2:5680939-5680958 Msa0233350:intron 35.0%
! AAGTCTAAGTGTTTTTCTGG+AGG - chr2_2:5680942-5680961 Msa0233350:intron 35.0%
!!! ACACTAGTTTTTTGCAGTCA+CGG - chr2_2:5681004-5681023 Msa0233350:intron 35.0%
! TCTCTTTGAGAAAGGGTATA+TGG + chr2_2:5681128-5681147 None:intergenic 35.0%
! ATGGTGATCTCTTTGAGAAA+GGG + chr2_2:5681135-5681154 None:intergenic 35.0%
! TATGGTGATCTCTTTGAGAA+AGG + chr2_2:5681136-5681155 None:intergenic 35.0%
TTTGTGATCTGCATGAAAAG+AGG - chr2_2:5681296-5681315 Msa0233350:intron 35.0%
GGTATACTTATACGTGGATT+TGG + chr2_2:5681373-5681392 None:intergenic 35.0%
!! TTGTGGGTATTTTCAAGATC+AGG + chr2_2:5681411-5681430 None:intergenic 35.0%
CCTTAATGACTAGATAAGCA+AGG + chr2_2:5681782-5681801 None:intergenic 35.0%
CCTTGCTTATCTAGTCATTA+AGG - chr2_2:5681779-5681798 Msa0233350:intron 35.0%
!! GTGCTAACATGTTTAACTTG+AGG - chr2_2:5681824-5681843 Msa0233350:intron 35.0%
CGTGCTTATTGTTACTCTTT+GGG - chr2_2:5681887-5681906 Msa0233350:CDS 35.0%
!!! CTCTTTGGGATTTTTTCACT+AGG - chr2_2:5681901-5681920 Msa0233350:CDS 35.0%
!!! CTTTGGGATTTTTTCACTAG+GGG - chr2_2:5681903-5681922 Msa0233350:intron 35.0%
!!! TTTGGGATTTTTTCACTAGG+GGG - chr2_2:5681904-5681923 Msa0233350:intron 35.0%
ACAAAGGTTAAGGTTTCTTG+TGG - chr2_2:5681967-5681986 Msa0233350:intron 35.0%
TCTGTTATTCCCTTTAATGC+AGG - chr2_2:5682157-5682176 Msa0233350:intron 35.0%
TTCTCTACTTTAACCTTCGA+TGG - chr2_2:5682419-5682438 Msa0233350:intron 35.0%
AACCTTCGATGGATATATTC+TGG - chr2_2:5682430-5682449 Msa0233350:intron 35.0%
TTCTTCGTTTCTTGTGTTTC+TGG - chr2_2:5682673-5682692 Msa0233350:intron 35.0%
TCTTCGTTTCTTGTGTTTCT+GGG - chr2_2:5682674-5682693 Msa0233350:intron 35.0%
GTATACATAGTAATCTCTGC+AGG - chr2_2:5682801-5682820 Msa0233350:intron 35.0%
TCTATCAAGCCTTGAACTAT+GGG - chr2_2:5682880-5682899 Msa0233350:intron 35.0%
CAAATAGTTCCCATAGTTCA+AGG + chr2_2:5682892-5682911 None:intergenic 35.0%
! ATTTTGCAAGCCTTGAACTA+TGG - chr2_2:5682950-5682969 Msa0233350:intron 35.0%
CATGAAATTGGAGATGATAC+AGG + chr2_2:5683083-5683102 None:intergenic 35.0%
!!! AGTGGATTATCATTTTGGTG+CGG - chr2_2:5683143-5683162 Msa0233350:intron 35.0%
CTCCATATCGTAACATTAAC+AGG + chr2_2:5683226-5683245 None:intergenic 35.0%
AAGTGCTTTGCATCAGAAAT+CGG - chr2_2:5683252-5683271 Msa0233350:intron 35.0%
! TATCTCTTCTAACTTTTCCC+AGG - chr2_2:5683335-5683354 Msa0233350:intron 35.0%
! GAACCATGTGGAAAATTTTC+TGG - chr2_2:5683460-5683479 Msa0233350:intron 35.0%
! ATGCCAGAAAATTTTCCACA+TGG + chr2_2:5683466-5683485 None:intergenic 35.0%
TAGAATTAGTACTCTGCATG+GGG + chr2_2:5683586-5683605 None:intergenic 35.0%
! CTGGAAGCATGATATATTCT+CGG - chr2_2:5683775-5683794 Msa0233350:intron 35.0%
AGCTAGATGAACAGCAAATT+GGG + chr2_2:5683814-5683833 None:intergenic 35.0%
GATCAGTCAGTTTCAGATTA+TGG - chr2_2:5683906-5683925 Msa0233350:intron 35.0%
TTGGTTAAGCCCATAATGAA+AGG + chr2_2:5684074-5684093 None:intergenic 35.0%
AACAGCAACATGAAAGAGAT+GGG + chr2_2:5684259-5684278 None:intergenic 35.0%
AAACAGCAACATGAAAGAGA+TGG + chr2_2:5684260-5684279 None:intergenic 35.0%
AAATCATCATGATTTCACGC+CGG - chr2_2:5684419-5684438 Msa0233350:intron 35.0%
ATCACATTACTATATCGTCC+TGG - chr2_2:5684495-5684514 Msa0233350:intron 35.0%
ACTCCAAATGCAAAGATGTT+AGG + chr2_2:5684795-5684814 None:intergenic 35.0%
TAATAGTAATGCAGGTTGCA+AGG - chr2_2:5684935-5684954 Msa0233350:intron 35.0%
TGCAAGGATCTATGTGATAA+TGG - chr2_2:5684951-5684970 Msa0233350:intron 35.0%
GTTGAAATCCTGTAGGTTAA+AGG + chr2_2:5684999-5685018 None:intergenic 35.0%
CCTACAGGATTTCAACATAA+CGG - chr2_2:5685003-5685022 Msa0233350:intron 35.0%
! CCCTCTTTTGTACAAAAAGA+AGG - chr2_2:5685187-5685206 Msa0233350:five_prime_UTR 35.0%
! CCCTTCTTTTTGTACAAAAG+AGG + chr2_2:5685191-5685210 None:intergenic 35.0%
!!! AAAGAACCGGTTTTGGATGA+TGG - chr2_2:5679291-5679310 Msa0233350:three_prime_UTR 40.0%
!!! AAGAACCGGTTTTGGATGAT+GGG - chr2_2:5679292-5679311 Msa0233350:three_prime_UTR 40.0%
AGCCAAGAAATTTCCGTTTG+TGG - chr2_2:5679407-5679426 Msa0233350:three_prime_UTR 40.0%
GCCAAGAAATTTCCGTTTGT+GGG - chr2_2:5679408-5679427 Msa0233350:three_prime_UTR 40.0%
ACCCACAAACGGAAATTTCT+TGG + chr2_2:5679412-5679431 None:intergenic 40.0%
ATTTCCGTTTGTGGGTGATA+AGG - chr2_2:5679416-5679435 Msa0233350:three_prime_UTR 40.0%
CTTACCTTATCACCCACAAA+CGG + chr2_2:5679423-5679442 None:intergenic 40.0%
GCAAAGAGTTCATACGATGT+AGG + chr2_2:5679448-5679467 None:intergenic 40.0%
GGCAATGGTTTAACGACTTA+GGG + chr2_2:5679730-5679749 None:intergenic 40.0%
AGGCAATGGTTTAACGACTT+AGG + chr2_2:5679731-5679750 None:intergenic 40.0%
TGACACACTTGATCTCCATT+GGG + chr2_2:5680165-5680184 None:intergenic 40.0%
TTGACACACTTGATCTCCAT+TGG + chr2_2:5680166-5680185 None:intergenic 40.0%
AAACCTAATGGCAATTGGTG+TGG - chr2_2:5680211-5680230 Msa0233350:intron 40.0%
GCAGGATATTCTTAAGAACG+CGG + chr2_2:5680471-5680490 None:intergenic 40.0%
!! GGCTCTAGAGACACATAATT+GGG - chr2_2:5680655-5680674 Msa0233350:intron 40.0%
!! GCTCTAGAGACACATAATTG+GGG - chr2_2:5680656-5680675 Msa0233350:intron 40.0%
!! TGGGGACAATTTTGACATAC+TGG - chr2_2:5680674-5680693 Msa0233350:intron 40.0%
GACACATAATAGGGGACATT+TGG + chr2_2:5680723-5680742 None:intergenic 40.0%
TGTCCCCTATTATGTGTCAT+TGG - chr2_2:5680725-5680744 Msa0233350:intron 40.0%
GCTCCAATGACACATAATAG+GGG + chr2_2:5680731-5680750 None:intergenic 40.0%
GGCTCCAATGACACATAATA+GGG + chr2_2:5680732-5680751 None:intergenic 40.0%
GTGAACAATGTTGTCAATGC+GGG + chr2_2:5680797-5680816 None:intergenic 40.0%
GGTGAACAATGTTGTCAATG+CGG + chr2_2:5680798-5680817 None:intergenic 40.0%
ACCAAAACCATCAACAAGCA+AGG - chr2_2:5680815-5680834 Msa0233350:intron 40.0%
CCAAAACCATCAACAAGCAA+GGG - chr2_2:5680816-5680835 Msa0233350:intron 40.0%
! AGAAAACCCTTGCTTGTTGA+TGG + chr2_2:5680825-5680844 None:intergenic 40.0%
!! ATGTTAAAGGTGGTGGAGTT+AGG + chr2_2:5680859-5680878 None:intergenic 40.0%
CCACCCAGTTTGTAGTAATT+GGG - chr2_2:5680978-5680997 Msa0233350:intron 40.0%
CCTCCCAATTACTACAAACT+GGG + chr2_2:5680984-5681003 None:intergenic 40.0%
TCCTCCCAATTACTACAAAC+TGG + chr2_2:5680985-5681004 None:intergenic 40.0%
CAATCTGTAATGGTGCAAGA+AGG + chr2_2:5681045-5681064 None:intergenic 40.0%
ACCATTGTTGAATAGAGCTG+TGG - chr2_2:5681094-5681113 Msa0233350:intron 40.0%
ACCACAGCTCTATTCAACAA+TGG + chr2_2:5681098-5681117 None:intergenic 40.0%
TGAATAGAGCTGTGGTTTCA+AGG - chr2_2:5681102-5681121 Msa0233350:intron 40.0%
GTATGTATTGTATGCGCAGA+AGG + chr2_2:5681169-5681188 None:intergenic 40.0%
GATTTGGATTCTTGGCAGTA+AGG + chr2_2:5681437-5681456 None:intergenic 40.0%
ATTAGGATGGTCAGCAACTA+AGG + chr2_2:5681619-5681638 None:intergenic 40.0%
TTTCAAAGAGTGATGCAAGG+TGG + chr2_2:5681752-5681771 None:intergenic 40.0%
AGGTTTCAAAGAGTGATGCA+AGG + chr2_2:5681755-5681774 None:intergenic 40.0%
GACTAGATAAGCAAGGAAAC+AGG + chr2_2:5681775-5681794 None:intergenic 40.0%
GCGTGCTTATTGTTACTCTT+TGG - chr2_2:5681886-5681905 Msa0233350:CDS 40.0%
GTTTCTTGTGGTAAATTGGC+AGG - chr2_2:5681979-5681998 Msa0233350:intron 40.0%
TTGGCTGCTGAATATCAATC+AGG - chr2_2:5682016-5682035 Msa0233350:intron 40.0%
ATCAGGCAGTCCTATATTAC+TGG - chr2_2:5682033-5682052 Msa0233350:intron 40.0%
ATGACATGACATGGCACAAA+AGG + chr2_2:5682100-5682119 None:intergenic 40.0%
CATCAAGCACCTGCATTAAA+GGG + chr2_2:5682169-5682188 None:intergenic 40.0%
CTTTAATGCAGGTGCTTGAT+GGG - chr2_2:5682168-5682187 Msa0233350:intron 40.0%
AGCCAGAATATATCCATCGA+AGG + chr2_2:5682435-5682454 None:intergenic 40.0%
! TCGATGGATATATTCTGGCT+TGG - chr2_2:5682435-5682454 Msa0233350:intron 40.0%
!! CGATGGATATATTCTGGCTT+GGG - chr2_2:5682436-5682455 Msa0233350:intron 40.0%
!! ATATATTCTGGCTTGGGTCT+AGG - chr2_2:5682442-5682461 Msa0233350:intron 40.0%
!! TATATTCTGGCTTGGGTCTA+GGG - chr2_2:5682443-5682462 Msa0233350:intron 40.0%
!! TAGAAAAGCACTTCAGACCT+TGG - chr2_2:5682598-5682617 Msa0233350:intron 40.0%
!! AGAAAAGCACTTCAGACCTT+GGG - chr2_2:5682599-5682618 Msa0233350:intron 40.0%
AGTCAATTCTGCATAACCCA+AGG + chr2_2:5682618-5682637 None:intergenic 40.0%
GTCTATCAAGCCTTGAACTA+TGG - chr2_2:5682879-5682898 Msa0233350:intron 40.0%
GGCCTGTTAATGTTACGATA+TGG - chr2_2:5683221-5683240 Msa0233350:intron 40.0%
CAGACCAGAGCTATGTTATA+GGG - chr2_2:5683275-5683294 Msa0233350:intron 40.0%
TACACCCTATAACATAGCTC+TGG + chr2_2:5683282-5683301 None:intergenic 40.0%
!! CATTTCTAGTCAGTTCTCCT+GGG + chr2_2:5683355-5683374 None:intergenic 40.0%
AGCTGGAAGACGTTATTCAA+GGG - chr2_2:5683689-5683708 Msa0233350:intron 40.0%
AGGAGTCAGTTATCACCTTA+TGG + chr2_2:5683725-5683744 None:intergenic 40.0%
GAGCTAGATGAACAGCAAAT+TGG + chr2_2:5683815-5683834 None:intergenic 40.0%
GATCAAGACATTTGGGCATT+GGG + chr2_2:5683950-5683969 None:intergenic 40.0%
AGATCAAGACATTTGGGCAT+TGG + chr2_2:5683951-5683970 None:intergenic 40.0%
AACCAATACAACAGTTGAGC+AGG - chr2_2:5684088-5684107 Msa0233350:intron 40.0%
AACCTGCTCAACTGTTGTAT+TGG + chr2_2:5684093-5684112 None:intergenic 40.0%
ACAGCAACATGAAAGAGATG+GGG + chr2_2:5684258-5684277 None:intergenic 40.0%
AAATCAGCTGTTGAGCCAAT+GGG - chr2_2:5684288-5684307 Msa0233350:intron 40.0%
AATGCCCAATGCATCTGAAA+GGG + chr2_2:5684343-5684362 None:intergenic 40.0%
TCAAGATACACAACACGGAT+TGG + chr2_2:5684366-5684385 None:intergenic 40.0%
TACGGTCAAGATACACAACA+CGG + chr2_2:5684371-5684390 None:intergenic 40.0%
TAGAGGATATCATAGTGACC+AGG + chr2_2:5684516-5684535 None:intergenic 40.0%
GATATCCTCTATCCAAAGTG+AGG - chr2_2:5684525-5684544 Msa0233350:intron 40.0%
ATCATCCTCACTTTGGATAG+AGG + chr2_2:5684533-5684552 None:intergenic 40.0%
CCAATAGATCATCCTCACTT+TGG + chr2_2:5684540-5684559 None:intergenic 40.0%
CCAAAGTGAGGATGATCTAT+TGG - chr2_2:5684537-5684556 Msa0233350:intron 40.0%
ATTAACAACCAAGCTCAGTG+TGG + chr2_2:5684593-5684612 None:intergenic 40.0%
ACTGAGCTTGGTTGTTAATG+AGG - chr2_2:5684594-5684613 Msa0233350:intron 40.0%
CTGAGCTTGGTTGTTAATGA+GGG - chr2_2:5684595-5684614 Msa0233350:intron 40.0%
TGGAGTTAATGAGTTCTGTG+AGG - chr2_2:5684809-5684828 Msa0233350:exon 40.0%
GGAGTTAATGAGTTCTGTGA+GGG - chr2_2:5684810-5684829 Msa0233350:exon 40.0%
CCGTTATGTTGAAATCCTGT+AGG + chr2_2:5685006-5685025 None:intergenic 40.0%
TTGCTCTTCACTCTCTCACA+CGG - chr2_2:5678920-5678939 Msa0233350:three_prime_UTR 45.0%
! TAGCTTGCGATTTCGATCGA+AGG - chr2_2:5678943-5678962 Msa0233350:intron 45.0%
!! GCGGAATAAAGAACCGGTTT+TGG - chr2_2:5679284-5679303 Msa0233350:three_prime_UTR 45.0%
!!! AGAACCGGTTTTGGATGATG+GGG - chr2_2:5679293-5679312 Msa0233350:three_prime_UTR 45.0%
ACTTCCCCATCATCCAAAAC+CGG + chr2_2:5679300-5679319 None:intergenic 45.0%
TGATGGGGAAGTAGAGTATG+AGG - chr2_2:5679308-5679327 Msa0233350:three_prime_UTR 45.0%
AAATTACCCCACGCAGATTC+TGG + chr2_2:5679339-5679358 None:intergenic 45.0%
! ATCTGCGTGGGGTAATTTTG+AGG - chr2_2:5679341-5679360 Msa0233350:three_prime_UTR 45.0%
GCAGCAGCAATCTTCTATTC+AGG - chr2_2:5679377-5679396 Msa0233350:three_prime_UTR 45.0%
CGTTTGTGGGTGATAAGGTA+AGG - chr2_2:5679421-5679440 Msa0233350:three_prime_UTR 45.0%
TGTGTGATCCGGTTGAAAAG+GGG + chr2_2:5679898-5679917 None:intergenic 45.0%
GTGTGTGATCCGGTTGAAAA+GGG + chr2_2:5679899-5679918 None:intergenic 45.0%
TGTGTGTGATCCGGTTGAAA+AGG + chr2_2:5679900-5679919 None:intergenic 45.0%
!! CACGAGGGTGTTTGTTGTTA+TGG - chr2_2:5680008-5680027 Msa0233350:CDS 45.0%
CAGAGTTGTGCTTAGTGTTG+TGG + chr2_2:5680066-5680085 None:intergenic 45.0%
GCACAACTCTGTTTCGACAT+TGG - chr2_2:5680075-5680094 Msa0233350:intron 45.0%
TAAGTGTCAACGATCCCCAA+TGG - chr2_2:5680147-5680166 Msa0233350:intron 45.0%
GACACACTTGATCTCCATTG+GGG + chr2_2:5680164-5680183 None:intergenic 45.0%
GAACCACACCAATTGCCATT+AGG + chr2_2:5680217-5680236 None:intergenic 45.0%
GGATGACCATGCTTGGTAAA+TGG + chr2_2:5680287-5680306 None:intergenic 45.0%
TGAACTAGGATGACCATGCT+TGG + chr2_2:5680294-5680313 None:intergenic 45.0%
CATCAAAAAGCTGTGGTGCT+AGG - chr2_2:5680321-5680340 Msa0233350:intron 45.0%
GGAACACGGCTACATTTGTT+TGG - chr2_2:5680430-5680449 Msa0233350:intron 45.0%
!! GGGCTCTAGAGACACATAAT+TGG - chr2_2:5680654-5680673 Msa0233350:intron 45.0%
GGGCTCCAATGACACATAAT+AGG + chr2_2:5680733-5680752 None:intergenic 45.0%
!!! CCCTTGCTTGTTGATGGTTT+TGG + chr2_2:5680819-5680838 None:intergenic 45.0%
GAACTGGGATGATCCCTATT+TGG - chr2_2:5680886-5680905 Msa0233350:intron 45.0%
GCCACCCAGTTTGTAGTAAT+TGG - chr2_2:5680977-5680996 Msa0233350:intron 45.0%
CCCAATTACTACAAACTGGG+TGG + chr2_2:5680981-5681000 None:intergenic 45.0%
CCCAGTTTGTAGTAATTGGG+AGG - chr2_2:5680981-5681000 Msa0233350:intron 45.0%
!! GCAGAAGGTGTTTGTGGTTA+TGG + chr2_2:5681154-5681173 None:intergenic 45.0%
ATGGTCAGCAACTAAGGAAG+TGG + chr2_2:5681613-5681632 None:intergenic 45.0%
!!! GGATTTTTTCACTAGGGGGA+TGG - chr2_2:5681908-5681927 Msa0233350:intron 45.0%
CCATCAAGCACCTGCATTAA+AGG + chr2_2:5682170-5682189 None:intergenic 45.0%
CCTTTAATGCAGGTGCTTGA+TGG - chr2_2:5682167-5682186 Msa0233350:intron 45.0%
ATGGGCAATATGCTGCCATT+CGG - chr2_2:5682186-5682205 Msa0233350:intron 45.0%
GATGGAAACTGCTTCTTTCG+AGG - chr2_2:5682221-5682240 Msa0233350:intron 45.0%
!! GTGGGTACATTCATTTTGGC+TGG + chr2_2:5682737-5682756 None:intergenic 45.0%
GCAGACCAGAGCTATGTTAT+AGG - chr2_2:5683274-5683293 Msa0233350:intron 45.0%
!! CCATTTCTAGTCAGTTCTCC+TGG + chr2_2:5683356-5683375 None:intergenic 45.0%
CCAGGAGAACTGACTAGAAA+TGG - chr2_2:5683353-5683372 Msa0233350:intron 45.0%
TCAGTTATTCCTTGAGCAGC+TGG - chr2_2:5683672-5683691 Msa0233350:intron 45.0%
CAGCTGGAAGACGTTATTCA+AGG - chr2_2:5683688-5683707 Msa0233350:intron 45.0%
AAGGGAAAGAGACGTCCATA+AGG - chr2_2:5683707-5683726 Msa0233350:intron 45.0%
CAAATCAGCTGTTGAGCCAA+TGG - chr2_2:5684287-5684306 Msa0233350:intron 45.0%
AAAGGGCGGTAATGTGAACA+TGG + chr2_2:5684326-5684345 None:intergenic 45.0%
GAATGCCCAATGCATCTGAA+AGG + chr2_2:5684344-5684363 None:intergenic 45.0%
CACCAGTATCACATGAGCTA+CGG + chr2_2:5684389-5684408 None:intergenic 45.0%
TAATGAGTTCTGTGAGGGCA+TGG - chr2_2:5684815-5684834 Msa0233350:exon 45.0%
AGAATCTACGCAGGCTACAA+GGG + chr2_2:5684843-5684862 None:intergenic 45.0%
TCATTCTGCAGAATCTACGC+AGG + chr2_2:5684852-5684871 None:intergenic 45.0%
AAATGCGCAGACATGCAATG+CGG + chr2_2:5684905-5684924 None:intergenic 45.0%
ACAGGCATCCTTTAACCTAC+AGG - chr2_2:5684988-5685007 Msa0233350:intron 45.0%
TGCTTAGTGTTGTGGTCACG+AGG + chr2_2:5680058-5680077 None:intergenic 50.0%
!! GTATGCGCAGAAGGTGTTTG+TGG + chr2_2:5681160-5681179 None:intergenic 50.0%
CTTGGCAGTAAGGCTGTTGT+GGG + chr2_2:5681427-5681446 None:intergenic 50.0%
TCTTGGCAGTAAGGCTGTTG+TGG + chr2_2:5681428-5681447 None:intergenic 50.0%
! TTTTCACTAGGGGGATGGAG+AGG - chr2_2:5681913-5681932 Msa0233350:intron 50.0%
GCAGGAACCACTATCTAGCT+TGG - chr2_2:5681997-5682016 Msa0233350:intron 50.0%
TCAGCAGCCAAGCTAGATAG+TGG + chr2_2:5682007-5682026 None:intergenic 50.0%
TAACGTCTTCCAGCTGCTCA+AGG + chr2_2:5683684-5683703 None:intergenic 50.0%
!! AGACATTTGGGCATTGGGAC+AGG + chr2_2:5683945-5683964 None:intergenic 50.0%
TACCGCCCTTTCAGATGCAT+TGG - chr2_2:5684335-5684354 Msa0233350:intron 50.0%
ACCGCCCTTTCAGATGCATT+GGG - chr2_2:5684336-5684355 Msa0233350:intron 50.0%
GACCGTAGCTCATGTGATAC+TGG - chr2_2:5684384-5684403 Msa0233350:intron 50.0%
CGTAGCTCATGTGATACTGG+TGG - chr2_2:5684387-5684406 Msa0233350:intron 50.0%
CAGAGCTACCACTAGCACTT+GGG + chr2_2:5684458-5684477 None:intergenic 50.0%
TCAGAGCTACCACTAGCACT+TGG + chr2_2:5684459-5684478 None:intergenic 50.0%
ATTCAGCTCCACACTGAGCT+TGG - chr2_2:5684582-5684601 Msa0233350:intron 50.0%
AATCTACGCAGGCTACAAGG+GGG + chr2_2:5684841-5684860 None:intergenic 50.0%
GAATCTACGCAGGCTACAAG+GGG + chr2_2:5684842-5684861 None:intergenic 50.0%
CAGAATCTACGCAGGCTACA+AGG + chr2_2:5684844-5684863 None:intergenic 50.0%
GGGGAAGTAGAGTATGAGGC+TGG - chr2_2:5679312-5679331 Msa0233350:three_prime_UTR 55.0%
ATCTCCACGAGTACGCCGAA+TGG + chr2_2:5682204-5682223 None:intergenic 55.0%
ATTCGGCGTACTCGTGGAGA+TGG - chr2_2:5682203-5682222 Msa0233350:intron 55.0%
! TGGCTTGGGTCTAGGGAGTA+TGG - chr2_2:5682450-5682469 Msa0233350:intron 55.0%
TGGTCGCTCTCTTCTCCCAT+TGG + chr2_2:5684306-5684325 None:intergenic 55.0%
GCCCAATGCATCTGAAAGGG+CGG + chr2_2:5684340-5684359 None:intergenic 55.0%
! CATGATTTCACGCCGGTTGC+TGG - chr2_2:5684426-5684445 Msa0233350:intron 55.0%
CTTGGGAGATCACCAGCAAC+CGG + chr2_2:5684441-5684460 None:intergenic 55.0%
GGTGATCTCCCAAGTGCTAG+TGG - chr2_2:5684447-5684466 Msa0233350:intron 55.0%
! AGGCTGGTCCAGAATCTGCG+TGG - chr2_2:5679328-5679347 Msa0233350:three_prime_UTR 60.0%
! GGCTGGTCCAGAATCTGCGT+GGG - chr2_2:5679329-5679348 Msa0233350:three_prime_UTR 60.0%
GCTGGTCCAGAATCTGCGTG+GGG - chr2_2:5679330-5679349 Msa0233350:three_prime_UTR 60.0%
GCTGCCATTCGGCGTACTCG+TGG - chr2_2:5682197-5682216 Msa0233350:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 5678826 5685274 5678826 ID=Msa0233350;Name=Msa0233350
chr2_2 mRNA 5678826 5685274 5678826 ID=Msa0233350-mRNA-1;Parent=Msa0233350;Name=Msa0233350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=212|1|1|1|0.77|0.6|10|515|298
chr2_2 exon 5678826 5678958 5678826 ID=Msa0233350-mRNA-1:exon:2442;Parent=Msa0233350-mRNA-1
chr2_2 exon 5679173 5679818 5679173 ID=Msa0233350-mRNA-1:exon:2441;Parent=Msa0233350-mRNA-1
chr2_2 exon 5679991 5680091 5679991 ID=Msa0233350-mRNA-1:exon:2440;Parent=Msa0233350-mRNA-1
chr2_2 exon 5680173 5680222 5680173 ID=Msa0233350-mRNA-1:exon:2439;Parent=Msa0233350-mRNA-1
chr2_2 exon 5680372 5680424 5680372 ID=Msa0233350-mRNA-1:exon:2438;Parent=Msa0233350-mRNA-1
chr2_2 exon 5681445 5681567 5681445 ID=Msa0233350-mRNA-1:exon:2437;Parent=Msa0233350-mRNA-1
chr2_2 exon 5681838 5681921 5681838 ID=Msa0233350-mRNA-1:exon:2436;Parent=Msa0233350-mRNA-1
chr2_2 exon 5682034 5682099 5682034 ID=Msa0233350-mRNA-1:exon:2435;Parent=Msa0233350-mRNA-1
chr2_2 exon 5684663 5684891 5684663 ID=Msa0233350-mRNA-1:exon:2434;Parent=Msa0233350-mRNA-1
chr2_2 exon 5685136 5685274 5685136 ID=Msa0233350-mRNA-1:exon:2433;Parent=Msa0233350-mRNA-1
chr2_2 five_prime_UTR 5685136 5685274 5685136 ID=Msa0233350-mRNA-1:five_prime_utr;Parent=Msa0233350-mRNA-1
chr2_2 five_prime_UTR 5684819 5684891 5684819 ID=Msa0233350-mRNA-1:five_prime_utr;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5684663 5684818 5684663 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5682034 5682099 5682034 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5681838 5681921 5681838 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5681445 5681567 5681445 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5680372 5680424 5680372 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5680173 5680222 5680173 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5679991 5680091 5679991 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 CDS 5679555 5679818 5679555 ID=Msa0233350-mRNA-1:cds;Parent=Msa0233350-mRNA-1
chr2_2 three_prime_UTR 5679173 5679554 5679173 ID=Msa0233350-mRNA-1:three_prime_utr;Parent=Msa0233350-mRNA-1
chr2_2 three_prime_UTR 5678826 5678958 5678826 ID=Msa0233350-mRNA-1:three_prime_utr;Parent=Msa0233350-mRNA-1
Gene Sequence

>Msa0233350

ATGCGGAATAAAGAACCGGTTTTGGATGATGGGGAAGTAGAGTATGAGGCTGGTCCAGAATCTGCGTGGGGTAATTTTGAGGATGATGATGTAATGCAGCAGCAATCTTCTATTCAGGATGATGAAGCCAAGAAATTTCCGTTTGTGGGTGATAAGGAACCACTATCTAGCTTGGCTGCTGAATATCAATCAGGCAGTCCTATATTACTGGAGAAAATCAAGGTGCTTGATGGGCAATATGCTGCCATTCGGCGTACTCGTGGAGATGGAAACTGCTTCTTTCGAGGCTTTATGTTTTCATACCTTGAGCATATTTTGGAAGCTCAAGACAGTGCAGAAATTGATCGCATCAAAGCCAATGTTGAGAGAAGTAGAAAAGCACTTCAGACCTTGGGTTATGCAGAATTGACTTTTGAAGATTTTTTTACGTTATTCCTTGAGCAGCTGGAAGACGTTATTCAAGGGAAAGAGACGTCCATAAGTCATGAGGAGCTTGTTATTAGAAGTCGAGATCAGTCAGTTTCAGATTATGTTGTTATGTTCTTCAGATTTGTTACATCTGCTGAAATACAGAAGCGCTCAGAATTTTTTGAACCTTTCATTATGGGCTTAACCAATACAACAGTTGAGCAGTTCTGCAAATCAGCTGTTGAGCCAATGGGAGAAGAGAGCGACCATGTTCACATTACCGCCCTTTCAGATGCATTGGGCATTCCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCACGCCGGTTGCTGGTGATCTCCCAAGTGCTAGTGGTAGCTCTGAAAAGAAGAATCCCTTCATCACATTACTATATCGTCCTGGTCACTATGATATCCTCTATCCAAAGTGA
Protein sequence

>Msa0233350

MRNKEPVLDDGEVEYEAGPESAWGNFEDDDVMQQQSSIQDDEAKKFPFVGDKEPLSSLAAEYQSGSPILLEKIKVLDGQYAAIRRTRGDGNCFFRGFMFSYLEHILEAQDSAEIDRIKANVERSRKALQTLGYAELTFEDFFTLFLEQLEDVIQGKETSISHEELVIRSRDQSVSDYVVMFFRFVTSAEIQKRSEFFEPFIMGLTNTTVEQFCKSAVEPMGEESDHVHITALSDALGIPIRVVYLDRSSCDTGGVSVNHHDFTPVAGDLPSASGSSEKKNPFITLLYRPGHYDILYPK*