AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191050 MtrunA17_Chr2g0280891 99.329 298 2 0 1 298 1 298 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191050 AT1G28120.1 73.188 276 68 2 23 298 26 295 1.86e-152 429

Find 92 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAGTCAGTTTCAGATTA+TGG 0.229342 2_1:-6569482 Msa0191050:intron
ATATTGCTTTCATGTTTAAA+TGG 0.252148 2_1:-6568245 Msa0191050:three_prime_UTR
TATTCTCTAGGAGCATATTT+TGG 0.256573 2_1:-6570864 Msa0191050:intron
ACCCACAAACGGAAATTTCT+TGG 0.270680 2_1:+6573981 None:intergenic
AATAACAAAGCAACATAAAA+TGG 0.275010 2_1:+6568645 None:intergenic
AAATTACCCCACGCAGATTC+TGG 0.280776 2_1:+6574054 None:intergenic
GCGGAATAAAGAACCGGTTT+TGG 0.300708 2_1:-6574106 Msa0191050:CDS
CATGATTTCACGCCGGTTGC+TGG 0.325738 2_1:-6568962 Msa0191050:CDS
CCTTTAATGCAGGTGCTTGA+TGG 0.327016 2_1:-6571220 Msa0191050:intron
ATCAGGCAGTCCTATATTAC+TGG 0.332456 2_1:-6571354 Msa0191050:CDS
TTTCCTAACATCTTTGCATT+TGG 0.342999 2_1:-6568599 Msa0191050:three_prime_UTR
TATGTTGCTTTGTTATTTGT+TGG 0.343434 2_1:-6568639 Msa0191050:three_prime_UTR
CCAAAGTGAGGATGATCTAT+TGG 0.358729 2_1:-6568851 Msa0191050:exon
GCAGCAGCAATCTTCTATTC+AGG 0.365842 2_1:-6574013 Msa0191050:CDS
ACTCCAAATGCAAAGATGTT+AGG 0.391544 2_1:+6568596 None:intergenic
AACCTGCTCAACTGTTGTAT+TGG 0.402598 2_1:+6569298 None:intergenic
GAAATTTGAATTGGTTTAAG+TGG 0.409110 2_1:-6574135 Msa0191050:five_prime_UTR
GCCAAGAAATTTCCGTTTGT+GGG 0.422209 2_1:-6573982 Msa0191050:CDS
CAGAATCTACGCAGGCTACA+AGG 0.425006 2_1:+6568547 None:intergenic
ATTTCCGTTTGTGGGTGATA+AGG 0.426081 2_1:-6573974 Msa0191050:intron
GTTTAAATGGACGAAATTGT+TGG 0.428156 2_1:-6568232 Msa0191050:three_prime_UTR
TACCGCCCTTTCAGATGCAT+TGG 0.433997 2_1:-6569053 Msa0191050:CDS
TTTAAATGGACGAAATTGTT+GGG 0.436179 2_1:-6568231 Msa0191050:three_prime_UTR
TCAGTTATTCCTTGAGCAGC+TGG 0.445312 2_1:-6569716 Msa0191050:intron
ATCATCCTCACTTTGGATAG+AGG 0.448191 2_1:+6568858 None:intergenic
ATTCAGCTCCACACTGAGCT+TGG 0.450711 2_1:-6568806 Msa0191050:three_prime_UTR
AGCCAAGAAATTTCCGTTTG+TGG 0.451303 2_1:-6573983 Msa0191050:CDS
GATGGAAACTGCTTCTTTCG+AGG 0.453514 2_1:-6571166 Msa0191050:CDS
CTTTAATGCAGGTGCTTGAT+GGG 0.460949 2_1:-6571219 Msa0191050:intron
ACCGCCCTTTCAGATGCATT+GGG 0.465250 2_1:-6569052 Msa0191050:CDS
TAGAAAAGCACTTCAGACCT+TGG 0.469580 2_1:-6570789 Msa0191050:CDS
CCAATAGATCATCCTCACTT+TGG 0.471036 2_1:+6568851 None:intergenic
AGAAAAGCACTTCAGACCTT+GGG 0.475463 2_1:-6570788 Msa0191050:CDS
ACGATATAGTAATGTGATGA+AGG 0.477093 2_1:+6568898 None:intergenic
TATATTACTGGAGAAAATCA+AGG 0.477418 2_1:-6571342 Msa0191050:intron
GACCGTAGCTCATGTGATAC+TGG 0.477717 2_1:-6569004 Msa0191050:CDS
TCAAGATACACAACACGGAT+TGG 0.481206 2_1:+6569025 None:intergenic
CTTGGGAGATCACCAGCAAC+CGG 0.484670 2_1:+6568950 None:intergenic
CAAATCAGCTGTTGAGCCAA+TGG 0.487126 2_1:-6569101 Msa0191050:CDS
GATTATTAATGCACTAATGT+CGG 0.487838 2_1:+6568676 None:intergenic
ACTGAGCTTGGTTGTTAATG+AGG 0.497760 2_1:-6568794 Msa0191050:three_prime_UTR
AACCAATACAACAGTTGAGC+AGG 0.497886 2_1:-6569300 Msa0191050:intron
TCAGAGCTACCACTAGCACT+TGG 0.502096 2_1:+6568932 None:intergenic
TTGGCTGCTGAATATCAATC+AGG 0.505721 2_1:-6571371 Msa0191050:CDS
AAATCAGCTGTTGAGCCAAT+GGG 0.508018 2_1:-6569100 Msa0191050:CDS
CAGCTGGAAGACGTTATTCA+AGG 0.512483 2_1:-6569700 Msa0191050:CDS
ATTCGGCGTACTCGTGGAGA+TGG 0.513061 2_1:-6571184 Msa0191050:CDS
ATGGGCAATATGCTGCCATT+CGG 0.513520 2_1:-6571201 Msa0191050:CDS
ACTTCCCCATCATCCAAAAC+CGG 0.521167 2_1:+6574093 None:intergenic
TCAGCAGCCAAGCTAGATAG+TGG 0.526345 2_1:+6571383 None:intergenic
AGAATCTACGCAGGCTACAA+GGG 0.530193 2_1:+6568548 None:intergenic
TGGTCGCTCTCTTCTCCCAT+TGG 0.541430 2_1:+6569085 None:intergenic
TTGGTTAAGCCCATAATGAA+AGG 0.547596 2_1:+6569317 None:intergenic
TGATGGGGAAGTAGAGTATG+AGG 0.548779 2_1:-6574082 Msa0191050:CDS
GCAGGAACCACTATCTAGCT+TGG 0.550864 2_1:-6571390 Msa0191050:intron
GCTGCCATTCGGCGTACTCG+TGG 0.551041 2_1:-6571190 Msa0191050:CDS
GGAGTTAATGAGTTCTGTGA+GGG 0.553827 2_1:-6568578 Msa0191050:three_prime_UTR
TAATGAGTTCTGTGAGGGCA+TGG 0.558218 2_1:-6568573 Msa0191050:three_prime_UTR
AAGGGAAAGAGACGTCCATA+AGG 0.560633 2_1:-6569681 Msa0191050:intron
CTGAGCTTGGTTGTTAATGA+GGG 0.563049 2_1:-6568793 Msa0191050:three_prime_UTR
TAACGTCTTCCAGCTGCTCA+AGG 0.563282 2_1:+6569707 None:intergenic
CAGAGCTACCACTAGCACTT+GGG 0.563915 2_1:+6568933 None:intergenic
GGCTGGTCCAGAATCTGCGT+GGG 0.566158 2_1:-6574061 Msa0191050:CDS
GGTGATCTCCCAAGTGCTAG+TGG 0.566956 2_1:-6568941 Msa0191050:CDS
AATGCCCAATGCATCTGAAA+GGG 0.567632 2_1:+6569048 None:intergenic
GAATGCCCAATGCATCTGAA+AGG 0.571708 2_1:+6569047 None:intergenic
CTTACCTTATCACCCACAAA+CGG 0.573186 2_1:+6573970 None:intergenic
ATCACATTACTATATCGTCC+TGG 0.585998 2_1:-6568893 Msa0191050:CDS
CGATATAGTAATGTGATGAA+GGG 0.586075 2_1:+6568899 None:intergenic
CACCAGTATCACATGAGCTA+CGG 0.599499 2_1:+6569002 None:intergenic
AGCTGGAAGACGTTATTCAA+GGG 0.602756 2_1:-6569699 Msa0191050:CDS
GGGGAAGTAGAGTATGAGGC+TGG 0.604667 2_1:-6574078 Msa0191050:CDS
AGTCAATTCTGCATAACCCA+AGG 0.624232 2_1:+6570772 None:intergenic
ATCTCCACGAGTACGCCGAA+TGG 0.624749 2_1:+6571186 None:intergenic
GCCCAATGCATCTGAAAGGG+CGG 0.633230 2_1:+6569051 None:intergenic
TAGCTTGCGATTTCGATCGA+AGG 0.634318 2_1:-6574444 Msa0191050:intron
GATATCCTCTATCCAAAGTG+AGG 0.635051 2_1:-6568863 Msa0191050:exon
GAATCTACGCAGGCTACAAG+GGG 0.635740 2_1:+6568549 None:intergenic
AGGCTGGTCCAGAATCTGCG+TGG 0.639324 2_1:-6574062 Msa0191050:CDS
TCATTCTGCAGAATCTACGC+AGG 0.639329 2_1:+6568539 None:intergenic
AAAGGGCGGTAATGTGAACA+TGG 0.647398 2_1:+6569065 None:intergenic
ATTATATGATCACAGTCATG+AGG 0.653815 2_1:-6569525 Msa0191050:intron
TCGCTCTTCACTCTCTCACA+CGG 0.656347 2_1:-6574467 Msa0191050:five_prime_UTR
TAGAGGATATCATAGTGACC+AGG 0.664906 2_1:+6568875 None:intergenic
TGGAGTTAATGAGTTCTGTG+AGG 0.679501 2_1:-6568579 Msa0191050:three_prime_UTR
ATTAACAACCAAGCTCAGTG+TGG 0.695543 2_1:+6568798 None:intergenic
AAATCATCATGATTTCACGC+CGG 0.709072 2_1:-6568969 Msa0191050:CDS
CGTAGCTCATGTGATACTGG+TGG 0.709600 2_1:-6569001 Msa0191050:CDS
GCTGGTCCAGAATCTGCGTG+GGG 0.726249 2_1:-6574060 Msa0191050:CDS
TACGGTCAAGATACACAACA+CGG 0.736056 2_1:+6569020 None:intergenic
AAATGCGCAGACATGCAATG+CGG 0.756758 2_1:+6568486 None:intergenic
AATCTACGCAGGCTACAAGG+GGG 0.769048 2_1:+6568550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATCTTTTGAATTTAAA+AGG + chr2_1:6569850-6569869 None:intergenic 10.0%
!!! AATAAATTAATCTAAAGTTA+TGG - chr2_1:6570008-6570027 Msa0191050:intron 10.0%
!!! ATTATTTCATTAATGTTTTT+TGG + chr2_1:6570516-6570535 None:intergenic 10.0%
!! AATTATAATATTCTTAAATG+AGG + chr2_1:6572941-6572960 None:intergenic 10.0%
!! ATTATTATTATTATCTTTGC+AGG - chr2_1:6568495-6568514 Msa0191050:three_prime_UTR 15.0%
!!! AATGTATGTTTTGTATTTTA+AGG - chr2_1:6569093-6569112 Msa0191050:CDS 15.0%
!!! TTATTATTCCATTAACTTTT+TGG - chr2_1:6569274-6569293 Msa0191050:intron 15.0%
!! ATTATATACCAAAAAGTTAA+TGG + chr2_1:6569285-6569304 None:intergenic 15.0%
!!! GTACTTTTTGTATTTAATAT+GGG + chr2_1:6569828-6569847 None:intergenic 15.0%
!!! TTTTATATGTGTATATCAAA+GGG + chr2_1:6570080-6570099 None:intergenic 15.0%
!! AATAAGATAGAGTTAATTTA+TGG + chr2_1:6571818-6571837 None:intergenic 15.0%
!!! GAATTTTTTATAAGATTAGT+GGG + chr2_1:6572066-6572085 None:intergenic 15.0%
!!! AGAATTTTTTATAAGATTAG+TGG + chr2_1:6572067-6572086 None:intergenic 15.0%
!! AAAAAATCTATCGAGAATTT+AGG - chr2_1:6568193-6568212 Msa0191050:three_prime_UTR 20.0%
!! AAAAATCTATCGAGAATTTA+GGG - chr2_1:6568194-6568213 Msa0191050:three_prime_UTR 20.0%
!! AACAATTCAACAAAAATTGA+AGG + chr2_1:6568369-6568388 None:intergenic 20.0%
!! GTAAAAAGTGAAATTTGAAT+TGG - chr2_1:6568554-6568573 Msa0191050:three_prime_UTR 20.0%
!! TTTGATGAAAAAACTATTTG+AGG - chr2_1:6568826-6568845 Msa0191050:three_prime_UTR 20.0%
!! CAAAACATACATTTAATAGA+AGG + chr2_1:6569086-6569105 None:intergenic 20.0%
!!! TAGGTAATCAACATATTTTT+AGG - chr2_1:6569720-6569739 Msa0191050:intron 20.0%
!!! GGTACTTTTTGTATTTAATA+TGG + chr2_1:6569829-6569848 None:intergenic 20.0%
!!! TTTTCTATTCTAATACTTAC+AGG - chr2_1:6569867-6569886 Msa0191050:intron 20.0%
!!! GTTTTATATGTGTATATCAA+AGG + chr2_1:6570081-6570100 None:intergenic 20.0%
!! TTTAACATCAATATTGAACT+GGG - chr2_1:6570182-6570201 Msa0191050:intron 20.0%
!! GTCTTTATCAACATTTAATT+TGG - chr2_1:6570547-6570566 Msa0191050:intron 20.0%
!! TGATTGTACATACATAAATT+AGG + chr2_1:6570947-6570966 None:intergenic 20.0%
!! ATTTATTTGAAGAGAGAAAA+AGG - chr2_1:6571005-6571024 Msa0191050:intron 20.0%
!! TTTATTTGAAGAGAGAAAAA+GGG - chr2_1:6571006-6571025 Msa0191050:intron 20.0%
!!! CAGAATTTGTTAAACTAAAA+TGG - chr2_1:6571165-6571184 Msa0191050:CDS 20.0%
!! ATTCAAGAAACATGAAAATA+TGG + chr2_1:6571445-6571464 None:intergenic 20.0%
!! ACATAACAATAAAACATACA+AGG + chr2_1:6571573-6571592 None:intergenic 20.0%
!! ATGTAACAATAAATCATTGA+AGG + chr2_1:6571667-6571686 None:intergenic 20.0%
!!! AATTTATGGACTGAAATTAT+TGG + chr2_1:6571804-6571823 None:intergenic 20.0%
!!! GACTTTTGAAGATTTTTTTA+CGG - chr2_1:6571945-6571964 Msa0191050:intron 20.0%
!! ATAAAAAATTCTCCAAACAT+AGG - chr2_1:6572075-6572094 Msa0191050:intron 20.0%
!!! TTAATAGTGGATTATCATTT+TGG - chr2_1:6572449-6572468 Msa0191050:intron 20.0%
!! CTACAGTAGTAAAAAAATTA+AGG - chr2_1:6572511-6572530 Msa0191050:intron 20.0%
!! TCATACAACAGAAAAAATAT+AGG - chr2_1:6572724-6572743 Msa0191050:intron 20.0%
!! TAACAAAGGTTTCTATTTAA+TGG - chr2_1:6572749-6572768 Msa0191050:intron 20.0%
!!! TTTTTAAAAATGCTGTGAAT+TGG - chr2_1:6572861-6572880 Msa0191050:intron 20.0%
!!! ATTTTTTGAACCTTTCATTA+TGG - chr2_1:6573371-6573390 Msa0191050:intron 20.0%
!!! TTTTTTGAACCTTTCATTAT+GGG - chr2_1:6573372-6573391 Msa0191050:intron 20.0%
!! AATAACAAAGCAACATAAAA+TGG + chr2_1:6574056-6574075 None:intergenic 20.0%
!! ATATTGCTTTCATGTTTAAA+TGG - chr2_1:6574453-6574472 Msa0191050:five_prime_UTR 20.0%
!! TTCAACGCAATTTTATGATT+CGG - chr2_1:6568457-6568476 Msa0191050:intron 25.0%
!! GAAATTTGAATTGGTTTAAG+TGG - chr2_1:6568563-6568582 Msa0191050:three_prime_UTR 25.0%
! CTTCATTATCTAGTCATTTA+GGG - chr2_1:6568785-6568804 Msa0191050:three_prime_UTR 25.0%
!! AAGCTAATTCAAGTTACTTA+AGG + chr2_1:6568897-6568916 None:intergenic 25.0%
!!! TTTTAAGGTATACTTACAAG+TGG - chr2_1:6569108-6569127 Msa0191050:CDS 25.0%
! AATATTTAATGTGTGTGATC+CGG + chr2_1:6569217-6569236 None:intergenic 25.0%
!!! CATTAGGTTTTTGAGTAATT+GGG + chr2_1:6569512-6569531 None:intergenic 25.0%
! TTTGATGTCAATATTGAACT+AGG + chr2_1:6569619-6569638 None:intergenic 25.0%
!!! TCAACATATTTTTAGGAACA+CGG - chr2_1:6569727-6569746 Msa0191050:intron 25.0%
!! AAACGTTAGTGATGTTTTAT+AGG - chr2_1:6569929-6569948 Msa0191050:intron 25.0%
! TTCAATATTGATGTTAAAGG+TGG + chr2_1:6570180-6570199 None:intergenic 25.0%
! CAGTTCAATATTGATGTTAA+AGG + chr2_1:6570183-6570202 None:intergenic 25.0%
! CTTTAACATCAATATTGAAC+TGG - chr2_1:6570181-6570200 Msa0191050:intron 25.0%
!!! TTTTAAGGTATACTTATACG+TGG + chr2_1:6570690-6570709 None:intergenic 25.0%
!! ATCAGGTGATTAGTATTTTA+AGG + chr2_1:6570705-6570724 None:intergenic 25.0%
! CATAAATAGATTTGGATTCT+TGG + chr2_1:6570756-6570775 None:intergenic 25.0%
! TACACGTACATAAATAGATT+TGG + chr2_1:6570764-6570783 None:intergenic 25.0%
! TGTACATACATAAATTAGGA+TGG + chr2_1:6570943-6570962 None:intergenic 25.0%
! ATCACAAAAAAACTAGACTT+TGG - chr2_1:6570967-6570986 Msa0191050:intron 25.0%
! TTATTTGAAGAGAGAAAAAG+GGG - chr2_1:6571007-6571026 Msa0191050:intron 25.0%
!!! TTTTGTTTGATACTTATGCA+TGG - chr2_1:6571032-6571051 Msa0191050:intron 25.0%
! AGAAATGATTGAAAGAACAA+AGG - chr2_1:6571262-6571281 Msa0191050:intron 25.0%
!! TTGATTTTCTCCAGTAATAT+AGG + chr2_1:6571357-6571376 None:intergenic 25.0%
! TATATTACTGGAGAAAATCA+AGG - chr2_1:6571356-6571375 Msa0191050:CDS 25.0%
! CAAAAGGAAATAGAGATAAA+AGG + chr2_1:6571395-6571414 None:intergenic 25.0%
! TGGAAACAATAAAACATACA+AGG + chr2_1:6571697-6571716 None:intergenic 25.0%
! TAGAGAATATGCAATTAAAC+TGG + chr2_1:6571717-6571736 None:intergenic 25.0%
! TTAACTCTATCTTATTCTCT+AGG - chr2_1:6571822-6571841 Msa0191050:intron 25.0%
! AAAAATCAAAATTCCATAGC+TGG + chr2_1:6572236-6572255 None:intergenic 25.0%
! AATAAATTCACCATAGTTCA+AGG + chr2_1:6572274-6572293 None:intergenic 25.0%
! TAAAGAAAGTGACATGAAAT+TGG + chr2_1:6572406-6572425 None:intergenic 25.0%
! TCCACTATTAAAACTTGAAA+GGG + chr2_1:6572440-6572459 None:intergenic 25.0%
! ATCCACTATTAAAACTTGAA+AGG + chr2_1:6572441-6572460 None:intergenic 25.0%
!!! TTTTTTACTACTGTAGTTCT+TGG + chr2_1:6572507-6572526 None:intergenic 25.0%
! TCTTGATTGTTCAAAAAAGT+TGG - chr2_1:6572697-6572716 Msa0191050:intron 25.0%
! AAAAAATATAGGCGTAACAA+AGG - chr2_1:6572735-6572754 Msa0191050:intron 25.0%
! TATAGTTCTTCTATTAGTGT+TGG - chr2_1:6572796-6572815 Msa0191050:intron 25.0%
! AAAATAAAGCAACATGTTTG+TGG + chr2_1:6572838-6572857 None:intergenic 25.0%
! TCAATGAAAATTCTTAGTGA+AGG + chr2_1:6573055-6573074 None:intergenic 25.0%
!! TTTCATTGACAATTTTGAAC+TGG - chr2_1:6573066-6573085 Msa0191050:intron 25.0%
! AAACAGTTTGTCAAGAAAAA+TGG + chr2_1:6573292-6573311 None:intergenic 25.0%
!! CTAACTTTAAACTCAACTTT+TGG + chr2_1:6573457-6573476 None:intergenic 25.0%
!! CAAAAGTTGAGTTTAAAGTT+AGG - chr2_1:6573455-6573474 Msa0191050:intron 25.0%
! GATTATTAATGCACTAATGT+CGG + chr2_1:6574025-6574044 None:intergenic 25.0%
!!! TATGTTGCTTTGTTATTTGT+TGG - chr2_1:6574059-6574078 Msa0191050:CDS 25.0%
!!! AACATAACGGAGTAAAATTT+TGG - chr2_1:6574326-6574345 Msa0191050:intron 25.0%
! TTTAAATGGACGAAATTGTT+GGG - chr2_1:6574467-6574486 Msa0191050:five_prime_UTR 25.0%
AAAGAAAAGGATGCAAAGAA+GGG + chr2_1:6568287-6568306 None:intergenic 30.0%
TTGGTTTAAGTGGAAAAATG+CGG - chr2_1:6568573-6568592 Msa0191050:three_prime_UTR 30.0%
AAAAATGCGGAATAAAGAAC+CGG - chr2_1:6568586-6568605 Msa0191050:three_prime_UTR 30.0%
CCTAAATGACTAGATAATGA+AGG + chr2_1:6568787-6568806 None:intergenic 30.0%
CCTTCATTATCTAGTCATTT+AGG - chr2_1:6568784-6568803 Msa0191050:three_prime_UTR 30.0%
! TATTTGAGGCAAGTGATAAT+AGG - chr2_1:6568840-6568859 Msa0191050:three_prime_UTR 30.0%
! ATTTGAGGCAAGTGATAATA+GGG - chr2_1:6568841-6568860 Msa0191050:three_prime_UTR 30.0%
TGATAATAGGGGTAAAATTG+AGG - chr2_1:6568853-6568872 Msa0191050:exon 30.0%
GATAATAGGGGTAAAATTGA+GGG - chr2_1:6568854-6568873 Msa0191050:exon 30.0%
ATAAGCTTGTGAGATAATCA+TGG - chr2_1:6568956-6568975 Msa0191050:CDS 30.0%
ATCAAGCAAATTAAAGGCAA+TGG + chr2_1:6569053-6569072 None:intergenic 30.0%
CATTTAATAGAAGGTTGCAT+GGG + chr2_1:6569077-6569096 None:intergenic 30.0%
ACATTTAATAGAAGGTTGCA+TGG + chr2_1:6569078-6569097 None:intergenic 30.0%
! GGATTTGGTCAAAATAGAAT+AGG - chr2_1:6569129-6569148 Msa0191050:intron 30.0%
! TTATATTACCCCTTTTCAAC+CGG - chr2_1:6569195-6569214 Msa0191050:intron 30.0%
!! TATTGATTCCTAAAGACTGA+TGG - chr2_1:6569233-6569252 Msa0191050:intron 30.0%
! ATTGATTCCTAAAGACTGAT+GGG - chr2_1:6569234-6569253 Msa0191050:intron 30.0%
TATGGTTATCTCTTTGAACA+AGG - chr2_1:6569337-6569356 Msa0191050:CDS 30.0%
ATGGTTATCTCTTTGAACAA+GGG - chr2_1:6569338-6569357 Msa0191050:CDS 30.0%
TATCTCAAAATAAGCAACAC+AGG + chr2_1:6569417-6569436 None:intergenic 30.0%
!!! CCATTAGGTTTTTGAGTAAT+TGG + chr2_1:6569513-6569532 None:intergenic 30.0%
CCAATTACTCAAAAACCTAA+TGG - chr2_1:6569510-6569529 Msa0191050:CDS 30.0%
!! CTCAAGTCAAAGTATTTTTG+TGG + chr2_1:6569552-6569571 None:intergenic 30.0%
!! AAAAATACTTTGACTTGAGC+AGG - chr2_1:6569553-6569572 Msa0191050:intron 30.0%
ATATTGACATCAAAAAGCTG+TGG - chr2_1:6569625-6569644 Msa0191050:intron 30.0%
GTTAATATTCTTAGGTAAGC+AGG + chr2_1:6569800-6569819 None:intergenic 30.0%
CCAAAACCATCAAAAAGTAA+GGG + chr2_1:6569896-6569915 None:intergenic 30.0%
ACCAAAACCATCAAAAAGTA+AGG + chr2_1:6569897-6569916 None:intergenic 30.0%
TTTATAGGTCGAAAACTGAT+TGG - chr2_1:6569944-6569963 Msa0191050:intron 30.0%
TTATAGGTCGAAAACTGATT+GGG - chr2_1:6569945-6569964 Msa0191050:intron 30.0%
AATATTGATGTTAAAGGTGG+TGG + chr2_1:6570177-6570196 None:intergenic 30.0%
! CTATTGCCATTTACCAAATA+GGG + chr2_1:6570213-6570232 None:intergenic 30.0%
ATTCTGTCAACAATCTGTAA+TGG + chr2_1:6570366-6570385 None:intergenic 30.0%
AACAATGGTTGTTATAGTTG+TGG + chr2_1:6570394-6570413 None:intergenic 30.0%
! AACTATGTGACTATCACTTT+TGG + chr2_1:6570795-6570814 None:intergenic 30.0%
!!! TCTTTGGGATTTTTTCACTA+GGG - chr2_1:6571213-6571232 Msa0191050:intron 30.0%
GATTGAAAGAACAAAGGTTA+AGG - chr2_1:6571268-6571287 Msa0191050:intron 30.0%
TAAGGTTTCTTGTGGTAAAT+TGG - chr2_1:6571286-6571305 Msa0191050:intron 30.0%
TGAAACAATATGACATGACA+TGG + chr2_1:6571420-6571439 None:intergenic 30.0%
CTGAAATTATTGGAATTGGA+AGG + chr2_1:6571794-6571813 None:intergenic 30.0%
TGGACTGAAATTATTGGAAT+TGG + chr2_1:6571798-6571817 None:intergenic 30.0%
!! TATTCTCTAGGAGCATATTT+TGG - chr2_1:6571834-6571853 Msa0191050:intron 30.0%
! TTTTCTACTTCTCTCAACAT+TGG + chr2_1:6571896-6571915 None:intergenic 30.0%
!! ATTAGTGGGTACATTCATTT+TGG + chr2_1:6572052-6572071 None:intergenic 30.0%
AAACACAATATGCCTATGTT+TGG + chr2_1:6572090-6572109 None:intergenic 30.0%
AAACATAGGCATATTGTGTT+TGG - chr2_1:6572089-6572108 Msa0191050:intron 30.0%
AACATAGGCATATTGTGTTT+GGG - chr2_1:6572090-6572109 Msa0191050:intron 30.0%
! TTGAATAGATTTTCCAGCTA+TGG - chr2_1:6572220-6572239 Msa0191050:intron 30.0%
TACTCGTAATTATCAAGTCA+TGG - chr2_1:6572363-6572382 Msa0191050:intron 30.0%
ATGAAATTGGAGATGATACA+GGG + chr2_1:6572393-6572412 None:intergenic 30.0%
!!! TCCCTTTCAAGTTTTAATAG+TGG - chr2_1:6572436-6572455 Msa0191050:intron 30.0%
! TTATAGGGTGTATTTTGTAG+TGG - chr2_1:6572601-6572620 Msa0191050:intron 30.0%
TTCTATTTAATGGAACCATG+TGG - chr2_1:6572759-6572778 Msa0191050:intron 30.0%
ATAGAATTAGTACTCTGCAT+GGG + chr2_1:6572897-6572916 None:intergenic 30.0%
TATAGAATTAGTACTCTGCA+TGG + chr2_1:6572898-6572917 None:intergenic 30.0%
ATTATATGATCACAGTCATG+AGG - chr2_1:6573173-6573192 Msa0191050:intron 30.0%
GAAATGAGATCAAGACATTT+GGG + chr2_1:6573267-6573286 None:intergenic 30.0%
AGAAATGAGATCAAGACATT+TGG + chr2_1:6573268-6573287 None:intergenic 30.0%
! CTTTAAACTCAACTTTTGGA+GGG + chr2_1:6573453-6573472 None:intergenic 30.0%
! ACTTTAAACTCAACTTTTGG+AGG + chr2_1:6573454-6573473 None:intergenic 30.0%
! GGTTTTCTGCAATAACATAA+TGG + chr2_1:6573506-6573525 None:intergenic 30.0%
ATTGCAGAAAACCTTGTATA+TGG - chr2_1:6573513-6573532 Msa0191050:intron 30.0%
GATGACTATATCCATATACA+AGG + chr2_1:6573527-6573546 None:intergenic 30.0%
CGATATAGTAATGTGATGAA+GGG + chr2_1:6573802-6573821 None:intergenic 30.0%
ACGATATAGTAATGTGATGA+AGG + chr2_1:6573803-6573822 None:intergenic 30.0%
TTTCCTAACATCTTTGCATT+TGG - chr2_1:6574099-6574118 Msa0191050:CDS 30.0%
TGCAACAATAATAGTAATGC+AGG - chr2_1:6574237-6574256 Msa0191050:intron 30.0%
! ATGGCCAAAATTTTGAATAC+AGG - chr2_1:6574280-6574299 Msa0191050:intron 30.0%
! GATGCCTGTATTCAAAATTT+TGG + chr2_1:6574287-6574306 None:intergenic 30.0%
GTTTAAATGGACGAAATTGT+TGG - chr2_1:6574466-6574485 Msa0191050:five_prime_UTR 30.0%
! CCTTCTTTTTGTACAAAAGA+GGG + chr2_1:6574499-6574518 None:intergenic 30.0%
! CCTCTTTTGTACAAAAAGAA+GGG - chr2_1:6574497-6574516 Msa0191050:five_prime_UTR 30.0%
ATGCAAAAAGCTAAACGCAA+TGG + chr2_1:6568169-6568188 None:intergenic 35.0%
GAAAGAAAAGGATGCAAAGA+AGG + chr2_1:6568288-6568307 None:intergenic 35.0%
TTTGCGCATTGAGAAAGAAA+AGG + chr2_1:6568300-6568319 None:intergenic 35.0%
CAAAGAGTTCATACGATGTA+GGG + chr2_1:6568755-6568774 None:intergenic 35.0%
! TTTGAGGCAAGTGATAATAG+GGG - chr2_1:6568842-6568861 Msa0191050:three_prime_UTR 35.0%
ACGACTTAGGGTTTAGTATT+TGG + chr2_1:6569026-6569045 None:intergenic 35.0%
ATGGGCATCAAGCAAATTAA+AGG + chr2_1:6569059-6569078 None:intergenic 35.0%
! GGTATACTTACAAGTGGATT+TGG - chr2_1:6569114-6569133 Msa0191050:intron 35.0%
AAAAACACCCATCAGTCTTT+AGG + chr2_1:6569244-6569263 None:intergenic 35.0%
ATATATTGTACGTATGCACG+AGG - chr2_1:6569303-6569322 Msa0191050:CDS 35.0%
TATATTGTACGTATGCACGA+GGG - chr2_1:6569304-6569323 Msa0191050:CDS 35.0%
TATCTCTTTGAACAAGGGTA+TGG - chr2_1:6569343-6569362 Msa0191050:CDS 35.0%
!!! TAGGTTTTTGAGTAATTGGG+AGG + chr2_1:6569509-6569528 None:intergenic 35.0%
CTCAAAAACCTAATGGCAAT+TGG - chr2_1:6569517-6569536 Msa0191050:intron 35.0%
CTATTACCATTTACCAAGCA+TGG - chr2_1:6569589-6569608 Msa0191050:intron 35.0%
GAATGCAGTTTCAGATTCTT+AGG - chr2_1:6569701-6569720 Msa0191050:CDS 35.0%
GGGTTGCAGTTAATATTCTT+AGG + chr2_1:6569808-6569827 None:intergenic 35.0%
!!! AGGAAACCCTTACTTTTTGA+TGG - chr2_1:6569887-6569906 Msa0191050:intron 35.0%
!!! CCCTTACTTTTTGATGGTTT+TGG - chr2_1:6569893-6569912 Msa0191050:intron 35.0%
! CAAAGGGTCTAAAACTGATT+GGG + chr2_1:6570064-6570083 None:intergenic 35.0%
! TCAAAGGGTCTAAAACTGAT+TGG + chr2_1:6570065-6570084 None:intergenic 35.0%
GATGATCCCTATTTGGTAAA+TGG - chr2_1:6570204-6570223 Msa0191050:intron 35.0%
! CCTATTGCCATTTACCAAAT+AGG + chr2_1:6570214-6570233 None:intergenic 35.0%
CCTATTTGGTAAATGGCAAT+AGG - chr2_1:6570211-6570230 Msa0191050:intron 35.0%
! CTCAAGTCTAAGTGTTTTTC+TGG - chr2_1:6570250-6570269 Msa0191050:intron 35.0%
! AAGTCTAAGTGTTTTTCTGG+AGG - chr2_1:6570253-6570272 Msa0191050:intron 35.0%
!!! ACACTAGTTTTTTGCAGTCA+CGG - chr2_1:6570315-6570334 Msa0191050:intron 35.0%
! TCTCTTTGAGAAAGGGTATA+TGG + chr2_1:6570439-6570458 None:intergenic 35.0%
! ATGGTGATCTCTTTGAGAAA+GGG + chr2_1:6570446-6570465 None:intergenic 35.0%
! TATGGTGATCTCTTTGAGAA+AGG + chr2_1:6570447-6570466 None:intergenic 35.0%
TTTGTGATCTGCATGAAAAG+AGG - chr2_1:6570607-6570626 Msa0191050:intron 35.0%
GGTATACTTATACGTGGATT+TGG + chr2_1:6570684-6570703 None:intergenic 35.0%
!! TTGTGGGTATTTTCAAGATC+AGG + chr2_1:6570722-6570741 None:intergenic 35.0%
CCTTAATGACTAGATAAGCA+AGG + chr2_1:6571093-6571112 None:intergenic 35.0%
CCTTGCTTATCTAGTCATTA+AGG - chr2_1:6571090-6571109 Msa0191050:intron 35.0%
!! GTGCTAACATGTTTAACTTG+AGG - chr2_1:6571135-6571154 Msa0191050:intron 35.0%
CGTGCTTATTGTTACTCTTT+GGG - chr2_1:6571198-6571217 Msa0191050:CDS 35.0%
!!! CTCTTTGGGATTTTTTCACT+AGG - chr2_1:6571212-6571231 Msa0191050:intron 35.0%
!!! CTTTGGGATTTTTTCACTAG+GGG - chr2_1:6571214-6571233 Msa0191050:intron 35.0%
!!! TTTGGGATTTTTTCACTAGG+GGG - chr2_1:6571215-6571234 Msa0191050:intron 35.0%
ACAAAGGTTAAGGTTTCTTG+TGG - chr2_1:6571278-6571297 Msa0191050:intron 35.0%
TCTGTTATTCCCTTTAATGC+AGG - chr2_1:6571468-6571487 Msa0191050:intron 35.0%
TTCTCTACTTTAACCTTCGA+TGG - chr2_1:6571730-6571749 Msa0191050:intron 35.0%
AACCTTCGATGGATATATTC+TGG - chr2_1:6571741-6571760 Msa0191050:intron 35.0%
TTCTTCGTTTCTTGTGTTTC+TGG - chr2_1:6571984-6572003 Msa0191050:intron 35.0%
TCTTCGTTTCTTGTGTTTCT+GGG - chr2_1:6571985-6572004 Msa0191050:intron 35.0%
GTATACATAGTAATCTCTGC+AGG - chr2_1:6572112-6572131 Msa0191050:intron 35.0%
TCTATCAAGCCTTGAACTAT+GGG - chr2_1:6572191-6572210 Msa0191050:intron 35.0%
CAAATAGTTCCCATAGTTCA+AGG + chr2_1:6572203-6572222 None:intergenic 35.0%
! ATTTTGCAAGCCTTGAACTA+TGG - chr2_1:6572261-6572280 Msa0191050:intron 35.0%
CATGAAATTGGAGATGATAC+AGG + chr2_1:6572394-6572413 None:intergenic 35.0%
!!! AGTGGATTATCATTTTGGTG+CGG - chr2_1:6572454-6572473 Msa0191050:intron 35.0%
CTCCATATCGTAACATTAAC+AGG + chr2_1:6572537-6572556 None:intergenic 35.0%
AAGTGCTTTGCATCAGAAAT+CGG - chr2_1:6572563-6572582 Msa0191050:intron 35.0%
! TATCTCTTCTAACTTTTCCC+AGG - chr2_1:6572646-6572665 Msa0191050:intron 35.0%
! GAACCATGTGGAAAATTTTC+TGG - chr2_1:6572771-6572790 Msa0191050:intron 35.0%
! ATGCCAGAAAATTTTCCACA+TGG + chr2_1:6572777-6572796 None:intergenic 35.0%
TAGAATTAGTACTCTGCATG+GGG + chr2_1:6572896-6572915 None:intergenic 35.0%
! CTGGAAGCATGATATATTCT+CGG - chr2_1:6573085-6573104 Msa0191050:intron 35.0%
AGCTAGATGAACAGCAAATT+GGG + chr2_1:6573124-6573143 None:intergenic 35.0%
GATCAGTCAGTTTCAGATTA+TGG - chr2_1:6573216-6573235 Msa0191050:intron 35.0%
TTGGTTAAGCCCATAATGAA+AGG + chr2_1:6573384-6573403 None:intergenic 35.0%
AACAGCAACATGAAAGAGAT+GGG + chr2_1:6573569-6573588 None:intergenic 35.0%
AAACAGCAACATGAAAGAGA+TGG + chr2_1:6573570-6573589 None:intergenic 35.0%
AAATCATCATGATTTCACGC+CGG - chr2_1:6573729-6573748 Msa0191050:intron 35.0%
ATCACATTACTATATCGTCC+TGG - chr2_1:6573805-6573824 Msa0191050:intron 35.0%
ACTCCAAATGCAAAGATGTT+AGG + chr2_1:6574105-6574124 None:intergenic 35.0%
TAATAGTAATGCAGGTTGCA+AGG - chr2_1:6574245-6574264 Msa0191050:intron 35.0%
TGCAAGGATCTATGTGATAA+TGG - chr2_1:6574261-6574280 Msa0191050:intron 35.0%
GTTGAAATCCTGTAGGTTAA+AGG + chr2_1:6574309-6574328 None:intergenic 35.0%
CCTACAGGATTTCAACATAA+CGG - chr2_1:6574313-6574332 Msa0191050:intron 35.0%
! CCCTCTTTTGTACAAAAAGA+AGG - chr2_1:6574496-6574515 Msa0191050:five_prime_UTR 35.0%
! CCCTTCTTTTTGTACAAAAG+AGG + chr2_1:6574500-6574519 None:intergenic 35.0%
!!! AAAGAACCGGTTTTGGATGA+TGG - chr2_1:6568599-6568618 Msa0191050:three_prime_UTR 40.0%
!!! AAGAACCGGTTTTGGATGAT+GGG - chr2_1:6568600-6568619 Msa0191050:three_prime_UTR 40.0%
AGCCAAGAAATTTCCGTTTG+TGG - chr2_1:6568715-6568734 Msa0191050:three_prime_UTR 40.0%
GCCAAGAAATTTCCGTTTGT+GGG - chr2_1:6568716-6568735 Msa0191050:three_prime_UTR 40.0%
ACCCACAAACGGAAATTTCT+TGG + chr2_1:6568720-6568739 None:intergenic 40.0%
ATTTCCGTTTGTGGGTGATA+AGG - chr2_1:6568724-6568743 Msa0191050:three_prime_UTR 40.0%
CTTACCTTATCACCCACAAA+CGG + chr2_1:6568731-6568750 None:intergenic 40.0%
GCAAAGAGTTCATACGATGT+AGG + chr2_1:6568756-6568775 None:intergenic 40.0%
GGCAATGGTTTAACGACTTA+GGG + chr2_1:6569038-6569057 None:intergenic 40.0%
AGGCAATGGTTTAACGACTT+AGG + chr2_1:6569039-6569058 None:intergenic 40.0%
TGACACACTTGATCTCCATT+GGG + chr2_1:6569476-6569495 None:intergenic 40.0%
TTGACACACTTGATCTCCAT+TGG + chr2_1:6569477-6569496 None:intergenic 40.0%
AAACCTAATGGCAATTGGTG+TGG - chr2_1:6569522-6569541 Msa0191050:intron 40.0%
GCAGGATATTCTTAAGAACG+CGG + chr2_1:6569782-6569801 None:intergenic 40.0%
!! GGCTCTAGAGACACATAATT+GGG - chr2_1:6569966-6569985 Msa0191050:intron 40.0%
!! GCTCTAGAGACACATAATTG+GGG - chr2_1:6569967-6569986 Msa0191050:intron 40.0%
!! TGGGGACAATTTTGACATAC+TGG - chr2_1:6569985-6570004 Msa0191050:intron 40.0%
GACACATAATAGGGGACATT+TGG + chr2_1:6570034-6570053 None:intergenic 40.0%
TGTCCCCTATTATGTGTCAT+TGG - chr2_1:6570036-6570055 Msa0191050:intron 40.0%
GCTCCAATGACACATAATAG+GGG + chr2_1:6570042-6570061 None:intergenic 40.0%
GGCTCCAATGACACATAATA+GGG + chr2_1:6570043-6570062 None:intergenic 40.0%
GTGAACAATGTTGTCAATGC+GGG + chr2_1:6570108-6570127 None:intergenic 40.0%
GGTGAACAATGTTGTCAATG+CGG + chr2_1:6570109-6570128 None:intergenic 40.0%
ACCAAAACCATCAACAAGCA+AGG - chr2_1:6570126-6570145 Msa0191050:intron 40.0%
CCAAAACCATCAACAAGCAA+GGG - chr2_1:6570127-6570146 Msa0191050:intron 40.0%
! AGAAAACCCTTGCTTGTTGA+TGG + chr2_1:6570136-6570155 None:intergenic 40.0%
!! ATGTTAAAGGTGGTGGAGTT+AGG + chr2_1:6570170-6570189 None:intergenic 40.0%
CCACCCAGTTTGTAGTAATT+GGG - chr2_1:6570289-6570308 Msa0191050:intron 40.0%
CCTCCCAATTACTACAAACT+GGG + chr2_1:6570295-6570314 None:intergenic 40.0%
TCCTCCCAATTACTACAAAC+TGG + chr2_1:6570296-6570315 None:intergenic 40.0%
CAATCTGTAATGGTGCAAGA+AGG + chr2_1:6570356-6570375 None:intergenic 40.0%
ACCATTGTTGAATAGAGCTG+TGG - chr2_1:6570405-6570424 Msa0191050:intron 40.0%
ACCACAGCTCTATTCAACAA+TGG + chr2_1:6570409-6570428 None:intergenic 40.0%
TGAATAGAGCTGTGGTTTCA+AGG - chr2_1:6570413-6570432 Msa0191050:intron 40.0%
GTATGTATTGTATGCGCAGA+AGG + chr2_1:6570480-6570499 None:intergenic 40.0%
GATTTGGATTCTTGGCAGTA+AGG + chr2_1:6570748-6570767 None:intergenic 40.0%
ATTAGGATGGTCAGCAACTA+AGG + chr2_1:6570930-6570949 None:intergenic 40.0%
TTTCAAAGAGTGATGCAAGG+TGG + chr2_1:6571063-6571082 None:intergenic 40.0%
AGGTTTCAAAGAGTGATGCA+AGG + chr2_1:6571066-6571085 None:intergenic 40.0%
GACTAGATAAGCAAGGAAAC+AGG + chr2_1:6571086-6571105 None:intergenic 40.0%
GCGTGCTTATTGTTACTCTT+TGG - chr2_1:6571197-6571216 Msa0191050:CDS 40.0%
GTTTCTTGTGGTAAATTGGC+AGG - chr2_1:6571290-6571309 Msa0191050:intron 40.0%
TTGGCTGCTGAATATCAATC+AGG - chr2_1:6571327-6571346 Msa0191050:intron 40.0%
ATCAGGCAGTCCTATATTAC+TGG - chr2_1:6571344-6571363 Msa0191050:CDS 40.0%
ATGACATGACATGGCACAAA+AGG + chr2_1:6571411-6571430 None:intergenic 40.0%
CATCAAGCACCTGCATTAAA+GGG + chr2_1:6571480-6571499 None:intergenic 40.0%
CTTTAATGCAGGTGCTTGAT+GGG - chr2_1:6571479-6571498 Msa0191050:intron 40.0%
AGCCAGAATATATCCATCGA+AGG + chr2_1:6571746-6571765 None:intergenic 40.0%
! TCGATGGATATATTCTGGCT+TGG - chr2_1:6571746-6571765 Msa0191050:intron 40.0%
!! CGATGGATATATTCTGGCTT+GGG - chr2_1:6571747-6571766 Msa0191050:intron 40.0%
!! ATATATTCTGGCTTGGGTCT+AGG - chr2_1:6571753-6571772 Msa0191050:intron 40.0%
!! TATATTCTGGCTTGGGTCTA+GGG - chr2_1:6571754-6571773 Msa0191050:intron 40.0%
!! TAGAAAAGCACTTCAGACCT+TGG - chr2_1:6571909-6571928 Msa0191050:intron 40.0%
!! AGAAAAGCACTTCAGACCTT+GGG - chr2_1:6571910-6571929 Msa0191050:intron 40.0%
AGTCAATTCTGCATAACCCA+AGG + chr2_1:6571929-6571948 None:intergenic 40.0%
GTCTATCAAGCCTTGAACTA+TGG - chr2_1:6572190-6572209 Msa0191050:intron 40.0%
GGCCTGTTAATGTTACGATA+TGG - chr2_1:6572532-6572551 Msa0191050:intron 40.0%
CAGACCAGAGCTATGTTATA+GGG - chr2_1:6572586-6572605 Msa0191050:intron 40.0%
TACACCCTATAACATAGCTC+TGG + chr2_1:6572593-6572612 None:intergenic 40.0%
!! CATTTCTAGTCAGTTCTCCT+GGG + chr2_1:6572666-6572685 None:intergenic 40.0%
AGCTGGAAGACGTTATTCAA+GGG - chr2_1:6572999-6573018 Msa0191050:intron 40.0%
AGGAGTCAGTTATCACCTTA+TGG + chr2_1:6573035-6573054 None:intergenic 40.0%
GAGCTAGATGAACAGCAAAT+TGG + chr2_1:6573125-6573144 None:intergenic 40.0%
GATCAAGACATTTGGGCATT+GGG + chr2_1:6573260-6573279 None:intergenic 40.0%
AGATCAAGACATTTGGGCAT+TGG + chr2_1:6573261-6573280 None:intergenic 40.0%
AACCAATACAACAGTTGAGC+AGG - chr2_1:6573398-6573417 Msa0191050:intron 40.0%
AACCTGCTCAACTGTTGTAT+TGG + chr2_1:6573403-6573422 None:intergenic 40.0%
ACAGCAACATGAAAGAGATG+GGG + chr2_1:6573568-6573587 None:intergenic 40.0%
AAATCAGCTGTTGAGCCAAT+GGG - chr2_1:6573598-6573617 Msa0191050:intron 40.0%
AATGCCCAATGCATCTGAAA+GGG + chr2_1:6573653-6573672 None:intergenic 40.0%
TCAAGATACACAACACGGAT+TGG + chr2_1:6573676-6573695 None:intergenic 40.0%
TACGGTCAAGATACACAACA+CGG + chr2_1:6573681-6573700 None:intergenic 40.0%
TAGAGGATATCATAGTGACC+AGG + chr2_1:6573826-6573845 None:intergenic 40.0%
GATATCCTCTATCCAAAGTG+AGG - chr2_1:6573835-6573854 Msa0191050:intron 40.0%
ATCATCCTCACTTTGGATAG+AGG + chr2_1:6573843-6573862 None:intergenic 40.0%
CCAATAGATCATCCTCACTT+TGG + chr2_1:6573850-6573869 None:intergenic 40.0%
CCAAAGTGAGGATGATCTAT+TGG - chr2_1:6573847-6573866 Msa0191050:intron 40.0%
ATTAACAACCAAGCTCAGTG+TGG + chr2_1:6573903-6573922 None:intergenic 40.0%
ACTGAGCTTGGTTGTTAATG+AGG - chr2_1:6573904-6573923 Msa0191050:intron 40.0%
CTGAGCTTGGTTGTTAATGA+GGG - chr2_1:6573905-6573924 Msa0191050:intron 40.0%
TGGAGTTAATGAGTTCTGTG+AGG - chr2_1:6574119-6574138 Msa0191050:exon 40.0%
GGAGTTAATGAGTTCTGTGA+GGG - chr2_1:6574120-6574139 Msa0191050:exon 40.0%
CCGTTATGTTGAAATCCTGT+AGG + chr2_1:6574316-6574335 None:intergenic 40.0%
! TAGCTTGCGATTTCGATCGA+AGG - chr2_1:6568254-6568273 Msa0191050:intron 45.0%
!! GCGGAATAAAGAACCGGTTT+TGG - chr2_1:6568592-6568611 Msa0191050:three_prime_UTR 45.0%
!!! AGAACCGGTTTTGGATGATG+GGG - chr2_1:6568601-6568620 Msa0191050:three_prime_UTR 45.0%
ACTTCCCCATCATCCAAAAC+CGG + chr2_1:6568608-6568627 None:intergenic 45.0%
TGATGGGGAAGTAGAGTATG+AGG - chr2_1:6568616-6568635 Msa0191050:three_prime_UTR 45.0%
AAATTACCCCACGCAGATTC+TGG + chr2_1:6568647-6568666 None:intergenic 45.0%
! ATCTGCGTGGGGTAATTTTG+AGG - chr2_1:6568649-6568668 Msa0191050:three_prime_UTR 45.0%
GCAGCAGCAATCTTCTATTC+AGG - chr2_1:6568685-6568704 Msa0191050:three_prime_UTR 45.0%
CGTTTGTGGGTGATAAGGTA+AGG - chr2_1:6568729-6568748 Msa0191050:three_prime_UTR 45.0%
TGTGTGATCCGGTTGAAAAG+GGG + chr2_1:6569206-6569225 None:intergenic 45.0%
GTGTGTGATCCGGTTGAAAA+GGG + chr2_1:6569207-6569226 None:intergenic 45.0%
TGTGTGTGATCCGGTTGAAA+AGG + chr2_1:6569208-6569227 None:intergenic 45.0%
!! CACGAGGGTGTTTGTTGTTA+TGG - chr2_1:6569319-6569338 Msa0191050:CDS 45.0%
CAGAGTTGTGCTTAGTGTTG+TGG + chr2_1:6569377-6569396 None:intergenic 45.0%
GCACAACTCTGTTTCGACAT+TGG - chr2_1:6569386-6569405 Msa0191050:intron 45.0%
TAAGTGTCAACGATCCCCAA+TGG - chr2_1:6569458-6569477 Msa0191050:intron 45.0%
GACACACTTGATCTCCATTG+GGG + chr2_1:6569475-6569494 None:intergenic 45.0%
GAACCACACCAATTGCCATT+AGG + chr2_1:6569528-6569547 None:intergenic 45.0%
GGATGACCATGCTTGGTAAA+TGG + chr2_1:6569598-6569617 None:intergenic 45.0%
TGAACTAGGATGACCATGCT+TGG + chr2_1:6569605-6569624 None:intergenic 45.0%
CATCAAAAAGCTGTGGTGCT+AGG - chr2_1:6569632-6569651 Msa0191050:intron 45.0%
GGAACACGGCTACATTTGTT+TGG - chr2_1:6569741-6569760 Msa0191050:intron 45.0%
!! GGGCTCTAGAGACACATAAT+TGG - chr2_1:6569965-6569984 Msa0191050:intron 45.0%
GGGCTCCAATGACACATAAT+AGG + chr2_1:6570044-6570063 None:intergenic 45.0%
!!! CCCTTGCTTGTTGATGGTTT+TGG + chr2_1:6570130-6570149 None:intergenic 45.0%
GAACTGGGATGATCCCTATT+TGG - chr2_1:6570197-6570216 Msa0191050:intron 45.0%
GCCACCCAGTTTGTAGTAAT+TGG - chr2_1:6570288-6570307 Msa0191050:intron 45.0%
CCCAATTACTACAAACTGGG+TGG + chr2_1:6570292-6570311 None:intergenic 45.0%
CCCAGTTTGTAGTAATTGGG+AGG - chr2_1:6570292-6570311 Msa0191050:intron 45.0%
!! GCAGAAGGTGTTTGTGGTTA+TGG + chr2_1:6570465-6570484 None:intergenic 45.0%
ATGGTCAGCAACTAAGGAAG+TGG + chr2_1:6570924-6570943 None:intergenic 45.0%
!!! GGATTTTTTCACTAGGGGGA+TGG - chr2_1:6571219-6571238 Msa0191050:intron 45.0%
CCATCAAGCACCTGCATTAA+AGG + chr2_1:6571481-6571500 None:intergenic 45.0%
CCTTTAATGCAGGTGCTTGA+TGG - chr2_1:6571478-6571497 Msa0191050:intron 45.0%
ATGGGCAATATGCTGCCATT+CGG - chr2_1:6571497-6571516 Msa0191050:intron 45.0%
GATGGAAACTGCTTCTTTCG+AGG - chr2_1:6571532-6571551 Msa0191050:intron 45.0%
!! GTGGGTACATTCATTTTGGC+TGG + chr2_1:6572048-6572067 None:intergenic 45.0%
GCAGACCAGAGCTATGTTAT+AGG - chr2_1:6572585-6572604 Msa0191050:intron 45.0%
!! CCATTTCTAGTCAGTTCTCC+TGG + chr2_1:6572667-6572686 None:intergenic 45.0%
CCAGGAGAACTGACTAGAAA+TGG - chr2_1:6572664-6572683 Msa0191050:intron 45.0%
TCAGTTATTCCTTGAGCAGC+TGG - chr2_1:6572982-6573001 Msa0191050:intron 45.0%
CAGCTGGAAGACGTTATTCA+AGG - chr2_1:6572998-6573017 Msa0191050:intron 45.0%
AAGGGAAAGAGACGTCCATA+AGG - chr2_1:6573017-6573036 Msa0191050:intron 45.0%
CAAATCAGCTGTTGAGCCAA+TGG - chr2_1:6573597-6573616 Msa0191050:intron 45.0%
AAAGGGCGGTAATGTGAACA+TGG + chr2_1:6573636-6573655 None:intergenic 45.0%
GAATGCCCAATGCATCTGAA+AGG + chr2_1:6573654-6573673 None:intergenic 45.0%
CACCAGTATCACATGAGCTA+CGG + chr2_1:6573699-6573718 None:intergenic 45.0%
TAATGAGTTCTGTGAGGGCA+TGG - chr2_1:6574125-6574144 Msa0191050:exon 45.0%
AGAATCTACGCAGGCTACAA+GGG + chr2_1:6574153-6574172 None:intergenic 45.0%
TCATTCTGCAGAATCTACGC+AGG + chr2_1:6574162-6574181 None:intergenic 45.0%
AAATGCGCAGACATGCAATG+CGG + chr2_1:6574215-6574234 None:intergenic 45.0%
ACAGGCATCCTTTAACCTAC+AGG - chr2_1:6574298-6574317 Msa0191050:intron 45.0%
TCGCTCTTCACTCTCTCACA+CGG - chr2_1:6568231-6568250 Msa0191050:three_prime_UTR 50.0%
TGCTTAGTGTTGTGGTCACG+AGG + chr2_1:6569369-6569388 None:intergenic 50.0%
!! GTATGCGCAGAAGGTGTTTG+TGG + chr2_1:6570471-6570490 None:intergenic 50.0%
CTTGGCAGTAAGGCTGTTGT+GGG + chr2_1:6570738-6570757 None:intergenic 50.0%
TCTTGGCAGTAAGGCTGTTG+TGG + chr2_1:6570739-6570758 None:intergenic 50.0%
! TTTTCACTAGGGGGATGGAG+AGG - chr2_1:6571224-6571243 Msa0191050:intron 50.0%
GCAGGAACCACTATCTAGCT+TGG - chr2_1:6571308-6571327 Msa0191050:intron 50.0%
TCAGCAGCCAAGCTAGATAG+TGG + chr2_1:6571318-6571337 None:intergenic 50.0%
TAACGTCTTCCAGCTGCTCA+AGG + chr2_1:6572994-6573013 None:intergenic 50.0%
!! AGACATTTGGGCATTGGGAC+AGG + chr2_1:6573255-6573274 None:intergenic 50.0%
TACCGCCCTTTCAGATGCAT+TGG - chr2_1:6573645-6573664 Msa0191050:intron 50.0%
ACCGCCCTTTCAGATGCATT+GGG - chr2_1:6573646-6573665 Msa0191050:intron 50.0%
GACCGTAGCTCATGTGATAC+TGG - chr2_1:6573694-6573713 Msa0191050:intron 50.0%
CGTAGCTCATGTGATACTGG+TGG - chr2_1:6573697-6573716 Msa0191050:intron 50.0%
CAGAGCTACCACTAGCACTT+GGG + chr2_1:6573768-6573787 None:intergenic 50.0%
TCAGAGCTACCACTAGCACT+TGG + chr2_1:6573769-6573788 None:intergenic 50.0%
ATTCAGCTCCACACTGAGCT+TGG - chr2_1:6573892-6573911 Msa0191050:intron 50.0%
AATCTACGCAGGCTACAAGG+GGG + chr2_1:6574151-6574170 None:intergenic 50.0%
GAATCTACGCAGGCTACAAG+GGG + chr2_1:6574152-6574171 None:intergenic 50.0%
CAGAATCTACGCAGGCTACA+AGG + chr2_1:6574154-6574173 None:intergenic 50.0%
GGGGAAGTAGAGTATGAGGC+TGG - chr2_1:6568620-6568639 Msa0191050:three_prime_UTR 55.0%
ATCTCCACGAGTACGCCGAA+TGG + chr2_1:6571515-6571534 None:intergenic 55.0%
ATTCGGCGTACTCGTGGAGA+TGG - chr2_1:6571514-6571533 Msa0191050:intron 55.0%
! TGGCTTGGGTCTAGGGAGTA+TGG - chr2_1:6571761-6571780 Msa0191050:intron 55.0%
TGGTCGCTCTCTTCTCCCAT+TGG + chr2_1:6573616-6573635 None:intergenic 55.0%
GCCCAATGCATCTGAAAGGG+CGG + chr2_1:6573650-6573669 None:intergenic 55.0%
! CATGATTTCACGCCGGTTGC+TGG - chr2_1:6573736-6573755 Msa0191050:intron 55.0%
CTTGGGAGATCACCAGCAAC+CGG + chr2_1:6573751-6573770 None:intergenic 55.0%
GGTGATCTCCCAAGTGCTAG+TGG - chr2_1:6573757-6573776 Msa0191050:intron 55.0%
! AGGCTGGTCCAGAATCTGCG+TGG - chr2_1:6568636-6568655 Msa0191050:three_prime_UTR 60.0%
! GGCTGGTCCAGAATCTGCGT+GGG - chr2_1:6568637-6568656 Msa0191050:three_prime_UTR 60.0%
GCTGGTCCAGAATCTGCGTG+GGG - chr2_1:6568638-6568657 Msa0191050:three_prime_UTR 60.0%
GCTGCCATTCGGCGTACTCG+TGG - chr2_1:6571508-6571527 Msa0191050:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6568137 6574583 6568137 ID=Msa0191050;Name=Msa0191050
chr2_1 mRNA 6568137 6574583 6568137 ID=Msa0191050-mRNA-1;Parent=Msa0191050;Name=Msa0191050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=212|1|1|1|0.77|0.6|10|515|298
chr2_1 exon 6568137 6568269 6568137 ID=Msa0191050-mRNA-1:exon:2951;Parent=Msa0191050-mRNA-1
chr2_1 exon 6568483 6569128 6568483 ID=Msa0191050-mRNA-1:exon:2950;Parent=Msa0191050-mRNA-1
chr2_1 exon 6569301 6569401 6569301 ID=Msa0191050-mRNA-1:exon:2949;Parent=Msa0191050-mRNA-1
chr2_1 exon 6569483 6569532 6569483 ID=Msa0191050-mRNA-1:exon:2948;Parent=Msa0191050-mRNA-1
chr2_1 exon 6569682 6569734 6569682 ID=Msa0191050-mRNA-1:exon:2947;Parent=Msa0191050-mRNA-1
chr2_1 exon 6570754 6570876 6570754 ID=Msa0191050-mRNA-1:exon:2946;Parent=Msa0191050-mRNA-1
chr2_1 exon 6571147 6571230 6571147 ID=Msa0191050-mRNA-1:exon:2945;Parent=Msa0191050-mRNA-1
chr2_1 exon 6571343 6571408 6571343 ID=Msa0191050-mRNA-1:exon:2944;Parent=Msa0191050-mRNA-1
chr2_1 exon 6573975 6574203 6573975 ID=Msa0191050-mRNA-1:exon:2943;Parent=Msa0191050-mRNA-1
chr2_1 exon 6574445 6574583 6574445 ID=Msa0191050-mRNA-1:exon:2942;Parent=Msa0191050-mRNA-1
chr2_1 five_prime_UTR 6574445 6574583 6574445 ID=Msa0191050-mRNA-1:five_prime_utr;Parent=Msa0191050-mRNA-1
chr2_1 five_prime_UTR 6574131 6574203 6574131 ID=Msa0191050-mRNA-1:five_prime_utr;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6573975 6574130 6573975 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6571343 6571408 6571343 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6571147 6571230 6571147 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6570754 6570876 6570754 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6569682 6569734 6569682 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6569483 6569532 6569483 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6569301 6569401 6569301 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 CDS 6568865 6569128 6568865 ID=Msa0191050-mRNA-1:cds;Parent=Msa0191050-mRNA-1
chr2_1 three_prime_UTR 6568483 6568864 6568483 ID=Msa0191050-mRNA-1:three_prime_utr;Parent=Msa0191050-mRNA-1
chr2_1 three_prime_UTR 6568137 6568269 6568137 ID=Msa0191050-mRNA-1:three_prime_utr;Parent=Msa0191050-mRNA-1
Gene Sequence

>Msa0191050

ATGCGGAATAAAGAACCGGTTTTGGATGATGGGGAAGTAGAGTATGAGGCTGGTCCAGAATCTGCGTGGGGTAATTTTGAGGATGATGATGTAATGCAGCAGCAATCTTCTATTCAGGATGATGAAGCCAAGAAATTTCCGTTTGTGGGTGATAAGGAACCACTATCTAGCTTGGCTGCTGAATATCAATCAGGCAGTCCTATATTACTGGAGAAAATCAAGGTGCTTGATGGGCAATATGCTGCCATTCGGCGTACTCGTGGAGATGGAAACTGCTTCTTTCGAGGCTTTATGTTTTCATACCTTGAGCATATTTTGGAAGCTCAAGACAGTGCAGAAATTGATCGCATCAAAGCCAATGTTGAGAGAAGTAGAAAAGCACTTCAGACCTTGGGTTATGCAGAATTGACTTTTGAAGATTTTTTTACGTTATTCCTTGAGCAGCTGGAAGACGTTATTCAAGGGAAAGAGACGTCCATAAGTCATGAGGAGCTTGTTATTAGAAGTCGAGATCAGTCAGTTTCAGATTATGTTGTTATGTTCTTCAGATTTGTTACATCTGCTGAAATACAGAAGCGCTCAGAATTTTTTGAACCTTTCATTATGGGCTTAACCAATACAACAGTTGAGCAGTTCTGCAAATCAGCTGTTGAGCCAATGGGAGAAGAGAGCGACCATGTTCACATTACCGCCCTTTCAGATGCATTGGGCATTCCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCACGCCGGTTGCTGGTGATCTCCCAAGTGCTAGTGGTAGCTCTGAAAAGAAGAATCCCTTCATCACATTACTATATCGTCCTGGTCACTATGATATCCTCTATCCAAAGTGA

Protein sequence

>Msa0191050

MRNKEPVLDDGEVEYEAGPESAWGNFEDDDVMQQQSSIQDDEAKKFPFVGDKEPLSSLAAEYQSGSPILLEKIKVLDGQYAAIRRTRGDGNCFFRGFMFSYLEHILEAQDSAEIDRIKANVERSRKALQTLGYAELTFEDFFTLFLEQLEDVIQGKETSISHEELVIRSRDQSVSDYVVMFFRFVTSAEIQKRSEFFEPFIMGLTNTTVEQFCKSAVEPMGEESDHVHITALSDALGIPIRVVYLDRSSCDTGGVSVNHHDFTPVAGDLPSASGSSEKKNPFITLLYRPGHYDILYPK*