AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1304820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304820 MtrunA17_Chr2g0280891 99.329 298 2 0 1 298 1 298 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304820 AT1G28120.1 73.188 276 68 2 23 298 26 295 1.86e-152 429

Find 92 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAGTCAGTTTCAGATTA+TGG 0.229342 8_3:+68019136 Msa1304820:CDS
ATATTGCTTTCATGTTTAAA+TGG 0.252148 8_3:+68020373 Msa1304820:three_prime_UTR
TATTCTCTAGGAGCATATTT+TGG 0.256573 8_3:+68017753 Msa1304820:intron
ACCCACAAACGGAAATTTCT+TGG 0.270680 8_3:-68014639 None:intergenic
AATAACAAAGCAACATAAAA+TGG 0.275010 8_3:-68019973 None:intergenic
AAATTACCCCACGCAGATTC+TGG 0.280776 8_3:-68014566 None:intergenic
GCGGAATAAAGAACCGGTTT+TGG 0.300708 8_3:+68014514 Msa1304820:CDS
CATGATTTCACGCCGGTTGC+TGG 0.325738 8_3:+68019656 Msa1304820:CDS
CCTTTAATGCAGGTGCTTGA+TGG 0.327016 8_3:+68017397 Msa1304820:intron
ATCAGGCAGTCCTATATTAC+TGG 0.332456 8_3:+68017263 Msa1304820:CDS
TTTCCTAACATCTTTGCATT+TGG 0.342999 8_3:+68020019 Msa1304820:three_prime_UTR
TATGTTGCTTTGTTATTTGT+TGG 0.343434 8_3:+68019979 Msa1304820:three_prime_UTR
CCAAAGTGAGGATGATCTAT+TGG 0.358729 8_3:+68019767 Msa1304820:exon
GCAGCAGCAATCTTCTATTC+AGG 0.365842 8_3:+68014607 Msa1304820:CDS
ACTCCAAATGCAAAGATGTT+AGG 0.391544 8_3:-68020022 None:intergenic
AACCTGCTCAACTGTTGTAT+TGG 0.402598 8_3:-68019320 None:intergenic
GAAATTTGAATTGGTTTAAG+TGG 0.409110 8_3:+68014485 Msa1304820:five_prime_UTR
GCCAAGAAATTTCCGTTTGT+GGG 0.422209 8_3:+68014638 Msa1304820:CDS
CAGAATCTACGCAGGCTACA+AGG 0.425006 8_3:-68020071 None:intergenic
ATTTCCGTTTGTGGGTGATA+AGG 0.426081 8_3:+68014646 Msa1304820:CDS
GTTTAAATGGACGAAATTGT+TGG 0.428156 8_3:+68020386 Msa1304820:three_prime_UTR
TACCGCCCTTTCAGATGCAT+TGG 0.433997 8_3:+68019565 Msa1304820:CDS
TTTAAATGGACGAAATTGTT+GGG 0.436179 8_3:+68020387 Msa1304820:three_prime_UTR
TCAGTTATTCCTTGAGCAGC+TGG 0.445312 8_3:+68018902 Msa1304820:intron
ATCATCCTCACTTTGGATAG+AGG 0.448191 8_3:-68019760 None:intergenic
ATTCAGCTCCACACTGAGCT+TGG 0.450711 8_3:+68019812 Msa1304820:three_prime_UTR
AGCCAAGAAATTTCCGTTTG+TGG 0.451303 8_3:+68014637 Msa1304820:CDS
GATGGAAACTGCTTCTTTCG+AGG 0.453514 8_3:+68017451 Msa1304820:CDS
CTTTAATGCAGGTGCTTGAT+GGG 0.460949 8_3:+68017398 Msa1304820:intron
ACCGCCCTTTCAGATGCATT+GGG 0.465250 8_3:+68019566 Msa1304820:CDS
TAGAAAAGCACTTCAGACCT+TGG 0.469580 8_3:+68017828 Msa1304820:CDS
CCAATAGATCATCCTCACTT+TGG 0.471036 8_3:-68019767 None:intergenic
AGAAAAGCACTTCAGACCTT+GGG 0.475463 8_3:+68017829 Msa1304820:CDS
ACGATATAGTAATGTGATGA+AGG 0.477093 8_3:-68019720 None:intergenic
TATATTACTGGAGAAAATCA+AGG 0.477418 8_3:+68017275 Msa1304820:CDS
GACCGTAGCTCATGTGATAC+TGG 0.477717 8_3:+68019614 Msa1304820:CDS
TCAAGATACACAACACGGAT+TGG 0.481206 8_3:-68019593 None:intergenic
CTTGGGAGATCACCAGCAAC+CGG 0.484670 8_3:-68019668 None:intergenic
CAAATCAGCTGTTGAGCCAA+TGG 0.487126 8_3:+68019517 Msa1304820:CDS
GATTATTAATGCACTAATGT+CGG 0.487838 8_3:-68019942 None:intergenic
ACTGAGCTTGGTTGTTAATG+AGG 0.497760 8_3:+68019824 Msa1304820:three_prime_UTR
AACCAATACAACAGTTGAGC+AGG 0.497886 8_3:+68019318 Msa1304820:CDS
TCAGAGCTACCACTAGCACT+TGG 0.502096 8_3:-68019686 None:intergenic
TTGGCTGCTGAATATCAATC+AGG 0.505721 8_3:+68017246 Msa1304820:CDS
AAATCAGCTGTTGAGCCAAT+GGG 0.508018 8_3:+68019518 Msa1304820:CDS
CAGCTGGAAGACGTTATTCA+AGG 0.512483 8_3:+68018918 Msa1304820:CDS
ATTCGGCGTACTCGTGGAGA+TGG 0.513061 8_3:+68017433 Msa1304820:CDS
ATGGGCAATATGCTGCCATT+CGG 0.513520 8_3:+68017416 Msa1304820:CDS
ACTTCCCCATCATCCAAAAC+CGG 0.521167 8_3:-68014527 None:intergenic
TCAGCAGCCAAGCTAGATAG+TGG 0.526345 8_3:-68017234 None:intergenic
AGAATCTACGCAGGCTACAA+GGG 0.530193 8_3:-68020070 None:intergenic
TGGTCGCTCTCTTCTCCCAT+TGG 0.541430 8_3:-68019533 None:intergenic
TTGGTTAAGCCCATAATGAA+AGG 0.547596 8_3:-68019301 None:intergenic
TGATGGGGAAGTAGAGTATG+AGG 0.548779 8_3:+68014538 Msa1304820:CDS
GCAGGAACCACTATCTAGCT+TGG 0.550864 8_3:+68017227 Msa1304820:intron
GCTGCCATTCGGCGTACTCG+TGG 0.551041 8_3:+68017427 Msa1304820:CDS
GGAGTTAATGAGTTCTGTGA+GGG 0.553827 8_3:+68020040 Msa1304820:three_prime_UTR
TAATGAGTTCTGTGAGGGCA+TGG 0.558218 8_3:+68020045 Msa1304820:three_prime_UTR
AAGGGAAAGAGACGTCCATA+AGG 0.560633 8_3:+68018937 Msa1304820:CDS
CTGAGCTTGGTTGTTAATGA+GGG 0.563049 8_3:+68019825 Msa1304820:three_prime_UTR
TAACGTCTTCCAGCTGCTCA+AGG 0.563282 8_3:-68018911 None:intergenic
CAGAGCTACCACTAGCACTT+GGG 0.563915 8_3:-68019685 None:intergenic
GGCTGGTCCAGAATCTGCGT+GGG 0.566158 8_3:+68014559 Msa1304820:CDS
GGTGATCTCCCAAGTGCTAG+TGG 0.566956 8_3:+68019677 Msa1304820:CDS
AATGCCCAATGCATCTGAAA+GGG 0.567632 8_3:-68019570 None:intergenic
GAATGCCCAATGCATCTGAA+AGG 0.571708 8_3:-68019571 None:intergenic
CTTACCTTATCACCCACAAA+CGG 0.573186 8_3:-68014650 None:intergenic
ATCACATTACTATATCGTCC+TGG 0.585998 8_3:+68019725 Msa1304820:CDS
CGATATAGTAATGTGATGAA+GGG 0.586075 8_3:-68019719 None:intergenic
CACCAGTATCACATGAGCTA+CGG 0.599499 8_3:-68019616 None:intergenic
AGCTGGAAGACGTTATTCAA+GGG 0.602756 8_3:+68018919 Msa1304820:CDS
GGGGAAGTAGAGTATGAGGC+TGG 0.604667 8_3:+68014542 Msa1304820:CDS
AGTCAATTCTGCATAACCCA+AGG 0.624232 8_3:-68017845 None:intergenic
ATCTCCACGAGTACGCCGAA+TGG 0.624749 8_3:-68017431 None:intergenic
GCCCAATGCATCTGAAAGGG+CGG 0.633230 8_3:-68019567 None:intergenic
TAGCTTGCGATTTCGATCGA+AGG 0.634318 8_3:+68014173 Msa1304820:five_prime_UTR
GATATCCTCTATCCAAAGTG+AGG 0.635051 8_3:+68019755 Msa1304820:CDS
GAATCTACGCAGGCTACAAG+GGG 0.635740 8_3:-68020069 None:intergenic
AGGCTGGTCCAGAATCTGCG+TGG 0.639324 8_3:+68014558 Msa1304820:CDS
TCATTCTGCAGAATCTACGC+AGG 0.639329 8_3:-68020079 None:intergenic
AAAGGGCGGTAATGTGAACA+TGG 0.647398 8_3:-68019553 None:intergenic
ATTATATGATCACAGTCATG+AGG 0.653815 8_3:+68019093 Msa1304820:intron
TTGCTCTTCACTCTCTCACA+CGG 0.656347 8_3:+68014150 Msa1304820:five_prime_UTR
TAGAGGATATCATAGTGACC+AGG 0.664906 8_3:-68019743 None:intergenic
TGGAGTTAATGAGTTCTGTG+AGG 0.679501 8_3:+68020039 Msa1304820:three_prime_UTR
ATTAACAACCAAGCTCAGTG+TGG 0.695543 8_3:-68019820 None:intergenic
AAATCATCATGATTTCACGC+CGG 0.709072 8_3:+68019649 Msa1304820:CDS
CGTAGCTCATGTGATACTGG+TGG 0.709600 8_3:+68019617 Msa1304820:CDS
GCTGGTCCAGAATCTGCGTG+GGG 0.726249 8_3:+68014560 Msa1304820:CDS
TACGGTCAAGATACACAACA+CGG 0.736056 8_3:-68019598 None:intergenic
AAATGCGCAGACATGCAATG+CGG 0.756758 8_3:-68020132 None:intergenic
AATCTACGCAGGCTACAAGG+GGG 0.769048 8_3:-68020068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATCTTTTGAATTTAAA+AGG - chr8_3:68015769-68015788 None:intergenic 10.0%
!!! AATAAATTAATCTAAAGTTA+TGG + chr8_3:68015927-68015946 Msa1304820:intron 10.0%
!!! ATTATTTCATTAATGTTTTT+TGG - chr8_3:68016435-68016454 None:intergenic 10.0%
!! AATTATAATATTCTTAAATG+AGG - chr8_3:68018861-68018880 None:intergenic 10.0%
!! ATTATTATTATTATCTTTGC+AGG + chr8_3:68014417-68014436 Msa1304820:intron 15.0%
!!! AATGTATGTTTTGTATTTTA+AGG + chr8_3:68015015-68015034 Msa1304820:intron 15.0%
!!! TTATTATTCCATTAACTTTT+TGG + chr8_3:68015193-68015212 Msa1304820:intron 15.0%
!! ATTATATACCAAAAAGTTAA+TGG - chr8_3:68015204-68015223 None:intergenic 15.0%
!!! GTACTTTTTGTATTTAATAT+GGG - chr8_3:68015747-68015766 None:intergenic 15.0%
!!! TTTTATATGTGTATATCAAA+GGG - chr8_3:68015999-68016018 None:intergenic 15.0%
!! AATAAGATAGAGTTAATTTA+TGG - chr8_3:68017737-68017756 None:intergenic 15.0%
!!! GAATTTTTTATAAGATTAGT+GGG - chr8_3:68017985-68018004 None:intergenic 15.0%
!!! AGAATTTTTTATAAGATTAG+TGG - chr8_3:68017986-68018005 None:intergenic 15.0%
!! AAAAAATCTATCGAGAATTT+AGG + chr8_3:68014112-68014131 Msa1304820:five_prime_UTR 20.0%
!! AAAAATCTATCGAGAATTTA+GGG + chr8_3:68014113-68014132 Msa1304820:five_prime_UTR 20.0%
!! AACAATTCAACAAAAATTGA+AGG - chr8_3:68014288-68014307 None:intergenic 20.0%
!! GTAAAAAGTGAAATTTGAAT+TGG + chr8_3:68014476-68014495 Msa1304820:five_prime_UTR 20.0%
!! TTTGATGAAAAAACTATTTG+AGG + chr8_3:68014748-68014767 Msa1304820:intron 20.0%
!! CAAAACATACATTTAATAGA+AGG - chr8_3:68015008-68015027 None:intergenic 20.0%
!!! TAGGTAATCAACATATTTTT+AGG + chr8_3:68015639-68015658 Msa1304820:intron 20.0%
!!! GGTACTTTTTGTATTTAATA+TGG - chr8_3:68015748-68015767 None:intergenic 20.0%
!!! TTTTCTATTCTAATACTTAC+AGG + chr8_3:68015786-68015805 Msa1304820:intron 20.0%
!!! GTTTTATATGTGTATATCAA+AGG - chr8_3:68016000-68016019 None:intergenic 20.0%
!! TTTAACATCAATATTGAACT+GGG + chr8_3:68016101-68016120 Msa1304820:intron 20.0%
!! GTCTTTATCAACATTTAATT+TGG + chr8_3:68016466-68016485 Msa1304820:intron 20.0%
!! TGATTGTACATACATAAATT+AGG - chr8_3:68016866-68016885 None:intergenic 20.0%
!! ATTTATTTGAAGAGAGAAAA+AGG + chr8_3:68016924-68016943 Msa1304820:intron 20.0%
!! TTTATTTGAAGAGAGAAAAA+GGG + chr8_3:68016925-68016944 Msa1304820:intron 20.0%
!!! CAGAATTTGTTAAACTAAAA+TGG + chr8_3:68017084-68017103 Msa1304820:intron 20.0%
!! ATTCAAGAAACATGAAAATA+TGG - chr8_3:68017364-68017383 None:intergenic 20.0%
!! ACATAACAATAAAACATACA+AGG - chr8_3:68017492-68017511 None:intergenic 20.0%
!! ATGTAACAATAAATCATTGA+AGG - chr8_3:68017586-68017605 None:intergenic 20.0%
!!! AATTTATGGACTGAAATTAT+TGG - chr8_3:68017723-68017742 None:intergenic 20.0%
!!! GACTTTTGAAGATTTTTTTA+CGG + chr8_3:68017864-68017883 Msa1304820:CDS 20.0%
!! ATAAAAAATTCTCCAAACAT+AGG + chr8_3:68017994-68018013 Msa1304820:intron 20.0%
!!! TTAATAGTGGATTATCATTT+TGG + chr8_3:68018368-68018387 Msa1304820:intron 20.0%
!! CTACAGTAGTAAAAAAATTA+AGG + chr8_3:68018430-68018449 Msa1304820:intron 20.0%
!! TCATACAACAGAAAAAATAT+AGG + chr8_3:68018643-68018662 Msa1304820:intron 20.0%
!! TAACAAAGGTTTCTATTTAA+TGG + chr8_3:68018668-68018687 Msa1304820:intron 20.0%
!!! TTTTTAAAAATGCTGTGAAT+TGG + chr8_3:68018781-68018800 Msa1304820:intron 20.0%
!!! ATTTTTTGAACCTTTCATTA+TGG + chr8_3:68019291-68019310 Msa1304820:CDS 20.0%
!!! TTTTTTGAACCTTTCATTAT+GGG + chr8_3:68019292-68019311 Msa1304820:CDS 20.0%
!! AATAACAAAGCAACATAAAA+TGG - chr8_3:68019976-68019995 None:intergenic 20.0%
!! ATATTGCTTTCATGTTTAAA+TGG + chr8_3:68020373-68020392 Msa1304820:three_prime_UTR 20.0%
!! TTCAACGCAATTTTATGATT+CGG + chr8_3:68014376-68014395 Msa1304820:intron 25.0%
!! GAAATTTGAATTGGTTTAAG+TGG + chr8_3:68014485-68014504 Msa1304820:five_prime_UTR 25.0%
! CTTCATTATCTAGTCATTTA+GGG + chr8_3:68014707-68014726 Msa1304820:intron 25.0%
!! AAGCTAATTCAAGTTACTTA+AGG - chr8_3:68014819-68014838 None:intergenic 25.0%
!!! TTTTAAGGTATACTTACAAG+TGG + chr8_3:68015030-68015049 Msa1304820:intron 25.0%
! AATATTTAATGTGTGTGATC+CGG - chr8_3:68015139-68015158 None:intergenic 25.0%
!!! CATTAGGTTTTTGAGTAATT+GGG - chr8_3:68015431-68015450 None:intergenic 25.0%
! TTTGATGTCAATATTGAACT+AGG - chr8_3:68015538-68015557 None:intergenic 25.0%
!!! TCAACATATTTTTAGGAACA+CGG + chr8_3:68015646-68015665 Msa1304820:intron 25.0%
!! AAACGTTAGTGATGTTTTAT+AGG + chr8_3:68015848-68015867 Msa1304820:intron 25.0%
! TTCAATATTGATGTTAAAGG+TGG - chr8_3:68016099-68016118 None:intergenic 25.0%
! CAGTTCAATATTGATGTTAA+AGG - chr8_3:68016102-68016121 None:intergenic 25.0%
! CTTTAACATCAATATTGAAC+TGG + chr8_3:68016100-68016119 Msa1304820:intron 25.0%
!!! TTTTAAGGTATACTTATACG+TGG - chr8_3:68016609-68016628 None:intergenic 25.0%
!! ATCAGGTGATTAGTATTTTA+AGG - chr8_3:68016624-68016643 None:intergenic 25.0%
! CATAAATAGATTTGGATTCT+TGG - chr8_3:68016675-68016694 None:intergenic 25.0%
! TACACGTACATAAATAGATT+TGG - chr8_3:68016683-68016702 None:intergenic 25.0%
! TGTACATACATAAATTAGGA+TGG - chr8_3:68016862-68016881 None:intergenic 25.0%
! ATCACAAAAAAACTAGACTT+TGG + chr8_3:68016886-68016905 Msa1304820:intron 25.0%
! TTATTTGAAGAGAGAAAAAG+GGG + chr8_3:68016926-68016945 Msa1304820:intron 25.0%
!!! TTTTGTTTGATACTTATGCA+TGG + chr8_3:68016951-68016970 Msa1304820:intron 25.0%
! AGAAATGATTGAAAGAACAA+AGG + chr8_3:68017181-68017200 Msa1304820:intron 25.0%
!! TTGATTTTCTCCAGTAATAT+AGG - chr8_3:68017276-68017295 None:intergenic 25.0%
! TATATTACTGGAGAAAATCA+AGG + chr8_3:68017275-68017294 Msa1304820:CDS 25.0%
! CAAAAGGAAATAGAGATAAA+AGG - chr8_3:68017314-68017333 None:intergenic 25.0%
! TGGAAACAATAAAACATACA+AGG - chr8_3:68017616-68017635 None:intergenic 25.0%
! TAGAGAATATGCAATTAAAC+TGG - chr8_3:68017636-68017655 None:intergenic 25.0%
! TTAACTCTATCTTATTCTCT+AGG + chr8_3:68017741-68017760 Msa1304820:intron 25.0%
! AATAAATTCACCATAGTTCA+AGG - chr8_3:68018193-68018212 None:intergenic 25.0%
! TAAAGAAAGTGACATGAAAT+TGG - chr8_3:68018325-68018344 None:intergenic 25.0%
! TCCACTATTAAAACTTGAAA+GGG - chr8_3:68018359-68018378 None:intergenic 25.0%
! ATCCACTATTAAAACTTGAA+AGG - chr8_3:68018360-68018379 None:intergenic 25.0%
!!! TTTTTTACTACTGTAGTTCT+TGG - chr8_3:68018426-68018445 None:intergenic 25.0%
! TCTTGATTGTTCAAAAAAGT+TGG + chr8_3:68018616-68018635 Msa1304820:intron 25.0%
! AAAAAATATAGGCGTAACAA+AGG + chr8_3:68018654-68018673 Msa1304820:intron 25.0%
! TATAGTTCTTCTATTAGTGT+TGG + chr8_3:68018715-68018734 Msa1304820:intron 25.0%
! AAAATAAAGCAACATGTTTG+TGG - chr8_3:68018757-68018776 None:intergenic 25.0%
! TCAATGAAAATTCTTAGTGA+AGG - chr8_3:68018975-68018994 None:intergenic 25.0%
!! TTTCATTGACAATTTTGAAC+TGG + chr8_3:68018986-68019005 Msa1304820:intron 25.0%
! AAACAGTTTGTCAAGAAAAA+TGG - chr8_3:68019212-68019231 None:intergenic 25.0%
! CTAACTTTAAACTCAACATT+TGG - chr8_3:68019377-68019396 None:intergenic 25.0%
!! CAAATGTTGAGTTTAAAGTT+AGG + chr8_3:68019375-68019394 Msa1304820:intron 25.0%
! GATTATTAATGCACTAATGT+CGG - chr8_3:68019945-68019964 None:intergenic 25.0%
!!! TATGTTGCTTTGTTATTTGT+TGG + chr8_3:68019979-68019998 Msa1304820:three_prime_UTR 25.0%
!!! AACATAACGGAGTAAAATTT+TGG + chr8_3:68020246-68020265 Msa1304820:intron 25.0%
! TTTAAATGGACGAAATTGTT+GGG + chr8_3:68020387-68020406 Msa1304820:three_prime_UTR 25.0%
AAAGAAAAGGATGCAAAGAA+GGG - chr8_3:68014206-68014225 None:intergenic 30.0%
TTGGTTTAAGTGGAAAAATG+CGG + chr8_3:68014495-68014514 Msa1304820:exon 30.0%
AAAAATGCGGAATAAAGAAC+CGG + chr8_3:68014508-68014527 Msa1304820:exon 30.0%
CCTAAATGACTAGATAATGA+AGG - chr8_3:68014709-68014728 None:intergenic 30.0%
CCTTCATTATCTAGTCATTT+AGG + chr8_3:68014706-68014725 Msa1304820:intron 30.0%
! TATTTGAGGCAAGTGATAAT+AGG + chr8_3:68014762-68014781 Msa1304820:intron 30.0%
! ATTTGAGGCAAGTGATAATA+GGG + chr8_3:68014763-68014782 Msa1304820:intron 30.0%
TGATAATAGGGGTAAAATTG+AGG + chr8_3:68014775-68014794 Msa1304820:intron 30.0%
GATAATAGGGGTAAAATTGA+GGG + chr8_3:68014776-68014795 Msa1304820:intron 30.0%
ATAAGCTTGTGAGATAATCA+TGG + chr8_3:68014878-68014897 Msa1304820:intron 30.0%
ATCAAGCAAATTAAAGGCAA+TGG - chr8_3:68014975-68014994 None:intergenic 30.0%
CATTTAATAGAAGGTTGCAT+GGG - chr8_3:68014999-68015018 None:intergenic 30.0%
ACATTTAATAGAAGGTTGCA+TGG - chr8_3:68015000-68015019 None:intergenic 30.0%
! GGATTTGGTCAAAATAGAAT+AGG + chr8_3:68015051-68015070 Msa1304820:intron 30.0%
! TTATATTACCCCTTTTCAAC+CGG + chr8_3:68015117-68015136 Msa1304820:intron 30.0%
!! TATTGATTCCTAAAGACTGA+TGG + chr8_3:68015155-68015174 Msa1304820:intron 30.0%
! ATTGATTCCTAAAGACTGAT+GGG + chr8_3:68015156-68015175 Msa1304820:intron 30.0%
TATGGTTATCTCTTTGAACA+AGG + chr8_3:68015256-68015275 Msa1304820:intron 30.0%
ATGGTTATCTCTTTGAACAA+GGG + chr8_3:68015257-68015276 Msa1304820:intron 30.0%
TATCTCAAAATAAGCAACAC+AGG - chr8_3:68015336-68015355 None:intergenic 30.0%
!!! CCATTAGGTTTTTGAGTAAT+TGG - chr8_3:68015432-68015451 None:intergenic 30.0%
CCAATTACTCAAAAACCTAA+TGG + chr8_3:68015429-68015448 Msa1304820:intron 30.0%
!! CTCAAGTCAAAGTATTTTTG+TGG - chr8_3:68015471-68015490 None:intergenic 30.0%
!! AAAAATACTTTGACTTGAGC+AGG + chr8_3:68015472-68015491 Msa1304820:intron 30.0%
ATATTGACATCAAAAAGCTG+TGG + chr8_3:68015544-68015563 Msa1304820:intron 30.0%
GTTAATATTCTTAGGTAAGC+AGG - chr8_3:68015719-68015738 None:intergenic 30.0%
CCAAAACCATCAAAAAGTAA+GGG - chr8_3:68015815-68015834 None:intergenic 30.0%
ACCAAAACCATCAAAAAGTA+AGG - chr8_3:68015816-68015835 None:intergenic 30.0%
TTTATAGGTCGAAAACTGAT+TGG + chr8_3:68015863-68015882 Msa1304820:intron 30.0%
TTATAGGTCGAAAACTGATT+GGG + chr8_3:68015864-68015883 Msa1304820:intron 30.0%
AATATTGATGTTAAAGGTGG+TGG - chr8_3:68016096-68016115 None:intergenic 30.0%
! CTATTGCCATTTACCAAATA+GGG - chr8_3:68016132-68016151 None:intergenic 30.0%
ATTCTGTCAACAATCTGTAA+TGG - chr8_3:68016285-68016304 None:intergenic 30.0%
AACAATGGTTGTTATAGTTG+TGG - chr8_3:68016313-68016332 None:intergenic 30.0%
! AACTATGTGACTATCACTTT+TGG - chr8_3:68016714-68016733 None:intergenic 30.0%
!!! TCTTTGGGATTTTTTCACTA+GGG + chr8_3:68017132-68017151 Msa1304820:intron 30.0%
GATTGAAAGAACAAAGGTTA+AGG + chr8_3:68017187-68017206 Msa1304820:intron 30.0%
TAAGGTTTCTTGTGGTAAAT+TGG + chr8_3:68017205-68017224 Msa1304820:intron 30.0%
TGAAACAATATGACATGACA+TGG - chr8_3:68017339-68017358 None:intergenic 30.0%
CTGAAATTATTGGAATTGGA+AGG - chr8_3:68017713-68017732 None:intergenic 30.0%
TGGACTGAAATTATTGGAAT+TGG - chr8_3:68017717-68017736 None:intergenic 30.0%
!! TATTCTCTAGGAGCATATTT+TGG + chr8_3:68017753-68017772 Msa1304820:intron 30.0%
! TTTTCTACTTCTCTCAACAT+TGG - chr8_3:68017815-68017834 None:intergenic 30.0%
!! ATTAGTGGGTACATTCATTT+TGG - chr8_3:68017971-68017990 None:intergenic 30.0%
AAACACAATATGCCTATGTT+TGG - chr8_3:68018009-68018028 None:intergenic 30.0%
AAACATAGGCATATTGTGTT+TGG + chr8_3:68018008-68018027 Msa1304820:intron 30.0%
AACATAGGCATATTGTGTTT+GGG + chr8_3:68018009-68018028 Msa1304820:intron 30.0%
! TTGAATAGATTTTCCAGCTA+TGG + chr8_3:68018139-68018158 Msa1304820:intron 30.0%
ACAAATCAAAATTCCATAGC+TGG - chr8_3:68018155-68018174 None:intergenic 30.0%
TACTCGTAATTATCAAGTCA+TGG + chr8_3:68018282-68018301 Msa1304820:intron 30.0%
ATGAAATTGGAGATGATACA+GGG - chr8_3:68018312-68018331 None:intergenic 30.0%
!!! TCCCTTTCAAGTTTTAATAG+TGG + chr8_3:68018355-68018374 Msa1304820:intron 30.0%
! TTATAGGGTGTATTTTGTAG+TGG + chr8_3:68018520-68018539 Msa1304820:intron 30.0%
TTCTATTTAATGGAACCATG+TGG + chr8_3:68018678-68018697 Msa1304820:intron 30.0%
ATAGAATTAGTACTCTGCAT+GGG - chr8_3:68018817-68018836 None:intergenic 30.0%
TATAGAATTAGTACTCTGCA+TGG - chr8_3:68018818-68018837 None:intergenic 30.0%
ATTATATGATCACAGTCATG+AGG + chr8_3:68019093-68019112 Msa1304820:intron 30.0%
GAAATGAGATCAAGACATTT+GGG - chr8_3:68019187-68019206 None:intergenic 30.0%
AGAAATGAGATCAAGACATT+TGG - chr8_3:68019188-68019207 None:intergenic 30.0%
CTTTAAACTCAACATTTGGA+GGG - chr8_3:68019373-68019392 None:intergenic 30.0%
ACTTTAAACTCAACATTTGG+AGG - chr8_3:68019374-68019393 None:intergenic 30.0%
! GGTTTTCTGCAATAACATAA+TGG - chr8_3:68019426-68019445 None:intergenic 30.0%
ATTGCAGAAAACCTTGTATA+TGG + chr8_3:68019433-68019452 Msa1304820:intron 30.0%
GATGACTATATCCATATACA+AGG - chr8_3:68019447-68019466 None:intergenic 30.0%
CGATATAGTAATGTGATGAA+GGG - chr8_3:68019722-68019741 None:intergenic 30.0%
ACGATATAGTAATGTGATGA+AGG - chr8_3:68019723-68019742 None:intergenic 30.0%
TTTCCTAACATCTTTGCATT+TGG + chr8_3:68020019-68020038 Msa1304820:three_prime_UTR 30.0%
TGCAACAATAATAGTAATGC+AGG + chr8_3:68020157-68020176 Msa1304820:intron 30.0%
! ATGGCCAAAATTTTGAATAC+AGG + chr8_3:68020200-68020219 Msa1304820:intron 30.0%
! GATGCCTGTATTCAAAATTT+TGG - chr8_3:68020207-68020226 None:intergenic 30.0%
GTTTAAATGGACGAAATTGT+TGG + chr8_3:68020386-68020405 Msa1304820:three_prime_UTR 30.0%
! CCTTCTTTTTGTACAAAAGA+GGG - chr8_3:68020419-68020438 None:intergenic 30.0%
! CCTCTTTTGTACAAAAAGAA+GGG + chr8_3:68020417-68020436 Msa1304820:three_prime_UTR 30.0%
ATGCAAAAAGCTAAACGCAA+TGG - chr8_3:68014088-68014107 None:intergenic 35.0%
GAAAGAAAAGGATGCAAAGA+AGG - chr8_3:68014207-68014226 None:intergenic 35.0%
TTTGCGCATTGAGAAAGAAA+AGG - chr8_3:68014219-68014238 None:intergenic 35.0%
CAAAGAGTTCATACGATGTA+GGG - chr8_3:68014677-68014696 None:intergenic 35.0%
! TTTGAGGCAAGTGATAATAG+GGG + chr8_3:68014764-68014783 Msa1304820:intron 35.0%
ACGACTTAGGGTTTAGTATT+TGG - chr8_3:68014948-68014967 None:intergenic 35.0%
ATGGGCATCAAGCAAATTAA+AGG - chr8_3:68014981-68015000 None:intergenic 35.0%
! GGTATACTTACAAGTGGATT+TGG + chr8_3:68015036-68015055 Msa1304820:intron 35.0%
AAAAACACCCATCAGTCTTT+AGG - chr8_3:68015166-68015185 None:intergenic 35.0%
ATATATTGTACGTATGCACG+AGG + chr8_3:68015222-68015241 Msa1304820:intron 35.0%
TATATTGTACGTATGCACGA+GGG + chr8_3:68015223-68015242 Msa1304820:intron 35.0%
TATCTCTTTGAACAAGGGTA+TGG + chr8_3:68015262-68015281 Msa1304820:intron 35.0%
!!! TAGGTTTTTGAGTAATTGGG+AGG - chr8_3:68015428-68015447 None:intergenic 35.0%
CTCAAAAACCTAATGGCAAT+TGG + chr8_3:68015436-68015455 Msa1304820:intron 35.0%
CTATTACCATTTACCAAGCA+TGG + chr8_3:68015508-68015527 Msa1304820:intron 35.0%
GAATGCAGTTTCAGATTCTT+AGG + chr8_3:68015620-68015639 Msa1304820:intron 35.0%
GGGTTGCAGTTAATATTCTT+AGG - chr8_3:68015727-68015746 None:intergenic 35.0%
!!! AGGAAACCCTTACTTTTTGA+TGG + chr8_3:68015806-68015825 Msa1304820:intron 35.0%
!!! CCCTTACTTTTTGATGGTTT+TGG + chr8_3:68015812-68015831 Msa1304820:intron 35.0%
! CAAAGGGTCTAAAACTGATT+GGG - chr8_3:68015983-68016002 None:intergenic 35.0%
! TCAAAGGGTCTAAAACTGAT+TGG - chr8_3:68015984-68016003 None:intergenic 35.0%
GATGATCCCTATTTGGTAAA+TGG + chr8_3:68016123-68016142 Msa1304820:intron 35.0%
! CCTATTGCCATTTACCAAAT+AGG - chr8_3:68016133-68016152 None:intergenic 35.0%
CCTATTTGGTAAATGGCAAT+AGG + chr8_3:68016130-68016149 Msa1304820:intron 35.0%
! CTCAAGTCTAAGTGTTTTTC+TGG + chr8_3:68016169-68016188 Msa1304820:intron 35.0%
! AAGTCTAAGTGTTTTTCTGG+AGG + chr8_3:68016172-68016191 Msa1304820:intron 35.0%
!!! ACACTAGTTTTTTGCAGTCA+CGG + chr8_3:68016234-68016253 Msa1304820:intron 35.0%
! TCTCTTTGAGAAAGGGTATA+TGG - chr8_3:68016358-68016377 None:intergenic 35.0%
! ATGGTGATCTCTTTGAGAAA+GGG - chr8_3:68016365-68016384 None:intergenic 35.0%
! TATGGTGATCTCTTTGAGAA+AGG - chr8_3:68016366-68016385 None:intergenic 35.0%
TTTGTGATCTGCATGAAAAG+AGG + chr8_3:68016526-68016545 Msa1304820:intron 35.0%
GGTATACTTATACGTGGATT+TGG - chr8_3:68016603-68016622 None:intergenic 35.0%
!! TTGTGGGTATTTTCAAGATC+AGG - chr8_3:68016641-68016660 None:intergenic 35.0%
CCTTAATGACTAGATAAGCA+AGG - chr8_3:68017012-68017031 None:intergenic 35.0%
CCTTGCTTATCTAGTCATTA+AGG + chr8_3:68017009-68017028 Msa1304820:intron 35.0%
!! GTGCTAACATGTTTAACTTG+AGG + chr8_3:68017054-68017073 Msa1304820:intron 35.0%
CGTGCTTATTGTTACTCTTT+GGG + chr8_3:68017117-68017136 Msa1304820:intron 35.0%
!!! CTCTTTGGGATTTTTTCACT+AGG + chr8_3:68017131-68017150 Msa1304820:intron 35.0%
!!! CTTTGGGATTTTTTCACTAG+GGG + chr8_3:68017133-68017152 Msa1304820:intron 35.0%
!!! TTTGGGATTTTTTCACTAGG+GGG + chr8_3:68017134-68017153 Msa1304820:intron 35.0%
ACAAAGGTTAAGGTTTCTTG+TGG + chr8_3:68017197-68017216 Msa1304820:intron 35.0%
TCTGTTATTCCCTTTAATGC+AGG + chr8_3:68017387-68017406 Msa1304820:intron 35.0%
TTCTCTACTTTAACCTTCGA+TGG + chr8_3:68017649-68017668 Msa1304820:intron 35.0%
AACCTTCGATGGATATATTC+TGG + chr8_3:68017660-68017679 Msa1304820:intron 35.0%
TTCTTCGTTTCTTGTGTTTC+TGG + chr8_3:68017903-68017922 Msa1304820:intron 35.0%
TCTTCGTTTCTTGTGTTTCT+GGG + chr8_3:68017904-68017923 Msa1304820:intron 35.0%
GTATACATAGTAATCTCTGC+AGG + chr8_3:68018031-68018050 Msa1304820:intron 35.0%
TCTATCAAGCCTTGAACTAT+GGG + chr8_3:68018110-68018129 Msa1304820:intron 35.0%
CAAATAGTTCCCATAGTTCA+AGG - chr8_3:68018122-68018141 None:intergenic 35.0%
! ATTTTGCAAGCCTTGAACTA+TGG + chr8_3:68018180-68018199 Msa1304820:intron 35.0%
CATGAAATTGGAGATGATAC+AGG - chr8_3:68018313-68018332 None:intergenic 35.0%
!!! AGTGGATTATCATTTTGGTG+CGG + chr8_3:68018373-68018392 Msa1304820:intron 35.0%
CTCCATATCGTAACATTAAC+AGG - chr8_3:68018456-68018475 None:intergenic 35.0%
AAGTGCTTTGCATCAGAAAT+CGG + chr8_3:68018482-68018501 Msa1304820:intron 35.0%
! TATCTCTTCTAACTTTTCCC+AGG + chr8_3:68018565-68018584 Msa1304820:intron 35.0%
! GAACCATGTGGAAAATTTTC+TGG + chr8_3:68018690-68018709 Msa1304820:intron 35.0%
! ATGCCAGAAAATTTTCCACA+TGG - chr8_3:68018696-68018715 None:intergenic 35.0%
TAGAATTAGTACTCTGCATG+GGG - chr8_3:68018816-68018835 None:intergenic 35.0%
! CTGGAAGCATGATATATTCT+CGG + chr8_3:68019005-68019024 Msa1304820:intron 35.0%
AGCTAGATGAACAGCAAATT+GGG - chr8_3:68019044-68019063 None:intergenic 35.0%
GATCAGTCAGTTTCAGATTA+TGG + chr8_3:68019136-68019155 Msa1304820:CDS 35.0%
TTGGTTAAGCCCATAATGAA+AGG - chr8_3:68019304-68019323 None:intergenic 35.0%
AACAGCAACATGAAAGAGAT+GGG - chr8_3:68019489-68019508 None:intergenic 35.0%
AAACAGCAACATGAAAGAGA+TGG - chr8_3:68019490-68019509 None:intergenic 35.0%
AAATCATCATGATTTCACGC+CGG + chr8_3:68019649-68019668 Msa1304820:CDS 35.0%
ATCACATTACTATATCGTCC+TGG + chr8_3:68019725-68019744 Msa1304820:CDS 35.0%
ACTCCAAATGCAAAGATGTT+AGG - chr8_3:68020025-68020044 None:intergenic 35.0%
TAATAGTAATGCAGGTTGCA+AGG + chr8_3:68020165-68020184 Msa1304820:intron 35.0%
TGCAAGGATCTATGTGATAA+TGG + chr8_3:68020181-68020200 Msa1304820:intron 35.0%
GTTGAAATCCTGTAGGTTAA+AGG - chr8_3:68020229-68020248 None:intergenic 35.0%
CCTACAGGATTTCAACATAA+CGG + chr8_3:68020233-68020252 Msa1304820:intron 35.0%
! CCCTCTTTTGTACAAAAAGA+AGG + chr8_3:68020416-68020435 Msa1304820:three_prime_UTR 35.0%
! CCCTTCTTTTTGTACAAAAG+AGG - chr8_3:68020420-68020439 None:intergenic 35.0%
!!! AAAGAACCGGTTTTGGATGA+TGG + chr8_3:68014521-68014540 Msa1304820:CDS 40.0%
!!! AAGAACCGGTTTTGGATGAT+GGG + chr8_3:68014522-68014541 Msa1304820:CDS 40.0%
AGCCAAGAAATTTCCGTTTG+TGG + chr8_3:68014637-68014656 Msa1304820:CDS 40.0%
GCCAAGAAATTTCCGTTTGT+GGG + chr8_3:68014638-68014657 Msa1304820:CDS 40.0%
ACCCACAAACGGAAATTTCT+TGG - chr8_3:68014642-68014661 None:intergenic 40.0%
ATTTCCGTTTGTGGGTGATA+AGG + chr8_3:68014646-68014665 Msa1304820:CDS 40.0%
CTTACCTTATCACCCACAAA+CGG - chr8_3:68014653-68014672 None:intergenic 40.0%
GCAAAGAGTTCATACGATGT+AGG - chr8_3:68014678-68014697 None:intergenic 40.0%
GGCAATGGTTTAACGACTTA+GGG - chr8_3:68014960-68014979 None:intergenic 40.0%
AGGCAATGGTTTAACGACTT+AGG - chr8_3:68014961-68014980 None:intergenic 40.0%
TGACACACTTGATCTCCATT+GGG - chr8_3:68015395-68015414 None:intergenic 40.0%
TTGACACACTTGATCTCCAT+TGG - chr8_3:68015396-68015415 None:intergenic 40.0%
AAACCTAATGGCAATTGGTG+TGG + chr8_3:68015441-68015460 Msa1304820:intron 40.0%
GCAGGATATTCTTAAGAACG+CGG - chr8_3:68015701-68015720 None:intergenic 40.0%
!! GGCTCTAGAGACACATAATT+GGG + chr8_3:68015885-68015904 Msa1304820:intron 40.0%
!! GCTCTAGAGACACATAATTG+GGG + chr8_3:68015886-68015905 Msa1304820:intron 40.0%
!! TGGGGACAATTTTGACATAC+TGG + chr8_3:68015904-68015923 Msa1304820:intron 40.0%
GACACATAATAGGGGACATT+TGG - chr8_3:68015953-68015972 None:intergenic 40.0%
TGTCCCCTATTATGTGTCAT+TGG + chr8_3:68015955-68015974 Msa1304820:intron 40.0%
GCTCCAATGACACATAATAG+GGG - chr8_3:68015961-68015980 None:intergenic 40.0%
GGCTCCAATGACACATAATA+GGG - chr8_3:68015962-68015981 None:intergenic 40.0%
GTGAACAATGTTGTCAATGC+GGG - chr8_3:68016027-68016046 None:intergenic 40.0%
GGTGAACAATGTTGTCAATG+CGG - chr8_3:68016028-68016047 None:intergenic 40.0%
ACCAAAACCATCAACAAGCA+AGG + chr8_3:68016045-68016064 Msa1304820:intron 40.0%
CCAAAACCATCAACAAGCAA+GGG + chr8_3:68016046-68016065 Msa1304820:intron 40.0%
! AGAAAACCCTTGCTTGTTGA+TGG - chr8_3:68016055-68016074 None:intergenic 40.0%
!! ATGTTAAAGGTGGTGGAGTT+AGG - chr8_3:68016089-68016108 None:intergenic 40.0%
CCACCCAGTTTGTAGTAATT+GGG + chr8_3:68016208-68016227 Msa1304820:intron 40.0%
CCTCCCAATTACTACAAACT+GGG - chr8_3:68016214-68016233 None:intergenic 40.0%
TCCTCCCAATTACTACAAAC+TGG - chr8_3:68016215-68016234 None:intergenic 40.0%
CAATCTGTAATGGTGCAAGA+AGG - chr8_3:68016275-68016294 None:intergenic 40.0%
ACCATTGTTGAATAGAGCTG+TGG + chr8_3:68016324-68016343 Msa1304820:intron 40.0%
ACCACAGCTCTATTCAACAA+TGG - chr8_3:68016328-68016347 None:intergenic 40.0%
TGAATAGAGCTGTGGTTTCA+AGG + chr8_3:68016332-68016351 Msa1304820:intron 40.0%
GTATGTATTGTATGCGCAGA+AGG - chr8_3:68016399-68016418 None:intergenic 40.0%
GATTTGGATTCTTGGCAGTA+AGG - chr8_3:68016667-68016686 None:intergenic 40.0%
ATTAGGATGGTCAGCAACTA+AGG - chr8_3:68016849-68016868 None:intergenic 40.0%
TTTCAAAGAGTGATGCAAGG+TGG - chr8_3:68016982-68017001 None:intergenic 40.0%
AGGTTTCAAAGAGTGATGCA+AGG - chr8_3:68016985-68017004 None:intergenic 40.0%
GACTAGATAAGCAAGGAAAC+AGG - chr8_3:68017005-68017024 None:intergenic 40.0%
GCGTGCTTATTGTTACTCTT+TGG + chr8_3:68017116-68017135 Msa1304820:intron 40.0%
GTTTCTTGTGGTAAATTGGC+AGG + chr8_3:68017209-68017228 Msa1304820:intron 40.0%
TTGGCTGCTGAATATCAATC+AGG + chr8_3:68017246-68017265 Msa1304820:CDS 40.0%
ATCAGGCAGTCCTATATTAC+TGG + chr8_3:68017263-68017282 Msa1304820:CDS 40.0%
ATGACATGACATGGCACAAA+AGG - chr8_3:68017330-68017349 None:intergenic 40.0%
CATCAAGCACCTGCATTAAA+GGG - chr8_3:68017399-68017418 None:intergenic 40.0%
CTTTAATGCAGGTGCTTGAT+GGG + chr8_3:68017398-68017417 Msa1304820:intron 40.0%
AGCCAGAATATATCCATCGA+AGG - chr8_3:68017665-68017684 None:intergenic 40.0%
! TCGATGGATATATTCTGGCT+TGG + chr8_3:68017665-68017684 Msa1304820:intron 40.0%
!! CGATGGATATATTCTGGCTT+GGG + chr8_3:68017666-68017685 Msa1304820:intron 40.0%
!! ATATATTCTGGCTTGGGTCT+AGG + chr8_3:68017672-68017691 Msa1304820:intron 40.0%
!! TATATTCTGGCTTGGGTCTA+GGG + chr8_3:68017673-68017692 Msa1304820:intron 40.0%
!! TAGAAAAGCACTTCAGACCT+TGG + chr8_3:68017828-68017847 Msa1304820:CDS 40.0%
!! AGAAAAGCACTTCAGACCTT+GGG + chr8_3:68017829-68017848 Msa1304820:CDS 40.0%
AGTCAATTCTGCATAACCCA+AGG - chr8_3:68017848-68017867 None:intergenic 40.0%
GTCTATCAAGCCTTGAACTA+TGG + chr8_3:68018109-68018128 Msa1304820:intron 40.0%
GGCCTGTTAATGTTACGATA+TGG + chr8_3:68018451-68018470 Msa1304820:intron 40.0%
CAGACCAGAGCTATGTTATA+GGG + chr8_3:68018505-68018524 Msa1304820:intron 40.0%
TACACCCTATAACATAGCTC+TGG - chr8_3:68018512-68018531 None:intergenic 40.0%
!! CATTTCTAGTCAGTTCTCCT+GGG - chr8_3:68018585-68018604 None:intergenic 40.0%
AGCTGGAAGACGTTATTCAA+GGG + chr8_3:68018919-68018938 Msa1304820:CDS 40.0%
AGGAGTCAGTTATCACCTTA+TGG - chr8_3:68018955-68018974 None:intergenic 40.0%
GAGCTAGATGAACAGCAAAT+TGG - chr8_3:68019045-68019064 None:intergenic 40.0%
GATCAAGACATTTGGGCATT+GGG - chr8_3:68019180-68019199 None:intergenic 40.0%
AGATCAAGACATTTGGGCAT+TGG - chr8_3:68019181-68019200 None:intergenic 40.0%
AACCAATACAACAGTTGAGC+AGG + chr8_3:68019318-68019337 Msa1304820:CDS 40.0%
AACCTGCTCAACTGTTGTAT+TGG - chr8_3:68019323-68019342 None:intergenic 40.0%
ACAGCAACATGAAAGAGATG+GGG - chr8_3:68019488-68019507 None:intergenic 40.0%
AAATCAGCTGTTGAGCCAAT+GGG + chr8_3:68019518-68019537 Msa1304820:CDS 40.0%
AATGCCCAATGCATCTGAAA+GGG - chr8_3:68019573-68019592 None:intergenic 40.0%
TCAAGATACACAACACGGAT+TGG - chr8_3:68019596-68019615 None:intergenic 40.0%
TACGGTCAAGATACACAACA+CGG - chr8_3:68019601-68019620 None:intergenic 40.0%
TAGAGGATATCATAGTGACC+AGG - chr8_3:68019746-68019765 None:intergenic 40.0%
GATATCCTCTATCCAAAGTG+AGG + chr8_3:68019755-68019774 Msa1304820:CDS 40.0%
ATCATCCTCACTTTGGATAG+AGG - chr8_3:68019763-68019782 None:intergenic 40.0%
CCAATAGATCATCCTCACTT+TGG - chr8_3:68019770-68019789 None:intergenic 40.0%
CCAAAGTGAGGATGATCTAT+TGG + chr8_3:68019767-68019786 Msa1304820:exon 40.0%
ATTAACAACCAAGCTCAGTG+TGG - chr8_3:68019823-68019842 None:intergenic 40.0%
ACTGAGCTTGGTTGTTAATG+AGG + chr8_3:68019824-68019843 Msa1304820:three_prime_UTR 40.0%
CTGAGCTTGGTTGTTAATGA+GGG + chr8_3:68019825-68019844 Msa1304820:three_prime_UTR 40.0%
TGGAGTTAATGAGTTCTGTG+AGG + chr8_3:68020039-68020058 Msa1304820:three_prime_UTR 40.0%
GGAGTTAATGAGTTCTGTGA+GGG + chr8_3:68020040-68020059 Msa1304820:three_prime_UTR 40.0%
CCGTTATGTTGAAATCCTGT+AGG - chr8_3:68020236-68020255 None:intergenic 40.0%
TTGCTCTTCACTCTCTCACA+CGG + chr8_3:68014150-68014169 Msa1304820:five_prime_UTR 45.0%
! TAGCTTGCGATTTCGATCGA+AGG + chr8_3:68014173-68014192 Msa1304820:five_prime_UTR 45.0%
!! GCGGAATAAAGAACCGGTTT+TGG + chr8_3:68014514-68014533 Msa1304820:CDS 45.0%
!!! AGAACCGGTTTTGGATGATG+GGG + chr8_3:68014523-68014542 Msa1304820:CDS 45.0%
ACTTCCCCATCATCCAAAAC+CGG - chr8_3:68014530-68014549 None:intergenic 45.0%
TGATGGGGAAGTAGAGTATG+AGG + chr8_3:68014538-68014557 Msa1304820:CDS 45.0%
AAATTACCCCACGCAGATTC+TGG - chr8_3:68014569-68014588 None:intergenic 45.0%
! ATCTGCGTGGGGTAATTTTG+AGG + chr8_3:68014571-68014590 Msa1304820:CDS 45.0%
GCAGCAGCAATCTTCTATTC+AGG + chr8_3:68014607-68014626 Msa1304820:CDS 45.0%
CGTTTGTGGGTGATAAGGTA+AGG + chr8_3:68014651-68014670 Msa1304820:intron 45.0%
TGTGTGATCCGGTTGAAAAG+GGG - chr8_3:68015128-68015147 None:intergenic 45.0%
GTGTGTGATCCGGTTGAAAA+GGG - chr8_3:68015129-68015148 None:intergenic 45.0%
TGTGTGTGATCCGGTTGAAA+AGG - chr8_3:68015130-68015149 None:intergenic 45.0%
!! CACGAGGGTGTTTGTTGTTA+TGG + chr8_3:68015238-68015257 Msa1304820:intron 45.0%
CAGAGTTGTGCTTAGTGTTG+TGG - chr8_3:68015296-68015315 None:intergenic 45.0%
GCACAACTCTGTTTCGACAT+TGG + chr8_3:68015305-68015324 Msa1304820:intron 45.0%
TAAGTGTCAACGATCCCCAA+TGG + chr8_3:68015377-68015396 Msa1304820:intron 45.0%
GACACACTTGATCTCCATTG+GGG - chr8_3:68015394-68015413 None:intergenic 45.0%
GAACCACACCAATTGCCATT+AGG - chr8_3:68015447-68015466 None:intergenic 45.0%
GGATGACCATGCTTGGTAAA+TGG - chr8_3:68015517-68015536 None:intergenic 45.0%
TGAACTAGGATGACCATGCT+TGG - chr8_3:68015524-68015543 None:intergenic 45.0%
CATCAAAAAGCTGTGGTGCT+AGG + chr8_3:68015551-68015570 Msa1304820:intron 45.0%
GGAACACGGCTACATTTGTT+TGG + chr8_3:68015660-68015679 Msa1304820:intron 45.0%
!! GGGCTCTAGAGACACATAAT+TGG + chr8_3:68015884-68015903 Msa1304820:intron 45.0%
GGGCTCCAATGACACATAAT+AGG - chr8_3:68015963-68015982 None:intergenic 45.0%
!!! CCCTTGCTTGTTGATGGTTT+TGG - chr8_3:68016049-68016068 None:intergenic 45.0%
GAACTGGGATGATCCCTATT+TGG + chr8_3:68016116-68016135 Msa1304820:intron 45.0%
GCCACCCAGTTTGTAGTAAT+TGG + chr8_3:68016207-68016226 Msa1304820:intron 45.0%
CCCAATTACTACAAACTGGG+TGG - chr8_3:68016211-68016230 None:intergenic 45.0%
CCCAGTTTGTAGTAATTGGG+AGG + chr8_3:68016211-68016230 Msa1304820:intron 45.0%
!! GCAGAAGGTGTTTGTGGTTA+TGG - chr8_3:68016384-68016403 None:intergenic 45.0%
ATGGTCAGCAACTAAGGAAG+TGG - chr8_3:68016843-68016862 None:intergenic 45.0%
!!! GGATTTTTTCACTAGGGGGA+TGG + chr8_3:68017138-68017157 Msa1304820:intron 45.0%
CCATCAAGCACCTGCATTAA+AGG - chr8_3:68017400-68017419 None:intergenic 45.0%
CCTTTAATGCAGGTGCTTGA+TGG + chr8_3:68017397-68017416 Msa1304820:intron 45.0%
ATGGGCAATATGCTGCCATT+CGG + chr8_3:68017416-68017435 Msa1304820:CDS 45.0%
GATGGAAACTGCTTCTTTCG+AGG + chr8_3:68017451-68017470 Msa1304820:CDS 45.0%
!! GTGGGTACATTCATTTTGGC+TGG - chr8_3:68017967-68017986 None:intergenic 45.0%
GCAGACCAGAGCTATGTTAT+AGG + chr8_3:68018504-68018523 Msa1304820:intron 45.0%
!! CCATTTCTAGTCAGTTCTCC+TGG - chr8_3:68018586-68018605 None:intergenic 45.0%
CCAGGAGAACTGACTAGAAA+TGG + chr8_3:68018583-68018602 Msa1304820:intron 45.0%
TCAGTTATTCCTTGAGCAGC+TGG + chr8_3:68018902-68018921 Msa1304820:intron 45.0%
CAGCTGGAAGACGTTATTCA+AGG + chr8_3:68018918-68018937 Msa1304820:CDS 45.0%
AAGGGAAAGAGACGTCCATA+AGG + chr8_3:68018937-68018956 Msa1304820:CDS 45.0%
CAAATCAGCTGTTGAGCCAA+TGG + chr8_3:68019517-68019536 Msa1304820:CDS 45.0%
AAAGGGCGGTAATGTGAACA+TGG - chr8_3:68019556-68019575 None:intergenic 45.0%
GAATGCCCAATGCATCTGAA+AGG - chr8_3:68019574-68019593 None:intergenic 45.0%
CACCAGTATCACATGAGCTA+CGG - chr8_3:68019619-68019638 None:intergenic 45.0%
TAATGAGTTCTGTGAGGGCA+TGG + chr8_3:68020045-68020064 Msa1304820:three_prime_UTR 45.0%
AGAATCTACGCAGGCTACAA+GGG - chr8_3:68020073-68020092 None:intergenic 45.0%
TCATTCTGCAGAATCTACGC+AGG - chr8_3:68020082-68020101 None:intergenic 45.0%
AAATGCGCAGACATGCAATG+CGG - chr8_3:68020135-68020154 None:intergenic 45.0%
ACAGGCATCCTTTAACCTAC+AGG + chr8_3:68020218-68020237 Msa1304820:intron 45.0%
TGCTTAGTGTTGTGGTCACG+AGG - chr8_3:68015288-68015307 None:intergenic 50.0%
!! GTATGCGCAGAAGGTGTTTG+TGG - chr8_3:68016390-68016409 None:intergenic 50.0%
CTTGGCAGTAAGGCTGTTGT+GGG - chr8_3:68016657-68016676 None:intergenic 50.0%
TCTTGGCAGTAAGGCTGTTG+TGG - chr8_3:68016658-68016677 None:intergenic 50.0%
! TTTTCACTAGGGGGATGGAG+AGG + chr8_3:68017143-68017162 Msa1304820:intron 50.0%
GCAGGAACCACTATCTAGCT+TGG + chr8_3:68017227-68017246 Msa1304820:intron 50.0%
TCAGCAGCCAAGCTAGATAG+TGG - chr8_3:68017237-68017256 None:intergenic 50.0%
TAACGTCTTCCAGCTGCTCA+AGG - chr8_3:68018914-68018933 None:intergenic 50.0%
!! AGACATTTGGGCATTGGGAC+AGG - chr8_3:68019175-68019194 None:intergenic 50.0%
TACCGCCCTTTCAGATGCAT+TGG + chr8_3:68019565-68019584 Msa1304820:CDS 50.0%
ACCGCCCTTTCAGATGCATT+GGG + chr8_3:68019566-68019585 Msa1304820:CDS 50.0%
GACCGTAGCTCATGTGATAC+TGG + chr8_3:68019614-68019633 Msa1304820:CDS 50.0%
CGTAGCTCATGTGATACTGG+TGG + chr8_3:68019617-68019636 Msa1304820:CDS 50.0%
CAGAGCTACCACTAGCACTT+GGG - chr8_3:68019688-68019707 None:intergenic 50.0%
TCAGAGCTACCACTAGCACT+TGG - chr8_3:68019689-68019708 None:intergenic 50.0%
ATTCAGCTCCACACTGAGCT+TGG + chr8_3:68019812-68019831 Msa1304820:three_prime_UTR 50.0%
AATCTACGCAGGCTACAAGG+GGG - chr8_3:68020071-68020090 None:intergenic 50.0%
GAATCTACGCAGGCTACAAG+GGG - chr8_3:68020072-68020091 None:intergenic 50.0%
CAGAATCTACGCAGGCTACA+AGG - chr8_3:68020074-68020093 None:intergenic 50.0%
GGGGAAGTAGAGTATGAGGC+TGG + chr8_3:68014542-68014561 Msa1304820:CDS 55.0%
ATCTCCACGAGTACGCCGAA+TGG - chr8_3:68017434-68017453 None:intergenic 55.0%
ATTCGGCGTACTCGTGGAGA+TGG + chr8_3:68017433-68017452 Msa1304820:CDS 55.0%
! TGGCTTGGGTCTAGGGAGTA+TGG + chr8_3:68017680-68017699 Msa1304820:intron 55.0%
TGGTCGCTCTCTTCTCCCAT+TGG - chr8_3:68019536-68019555 None:intergenic 55.0%
GCCCAATGCATCTGAAAGGG+CGG - chr8_3:68019570-68019589 None:intergenic 55.0%
! CATGATTTCACGCCGGTTGC+TGG + chr8_3:68019656-68019675 Msa1304820:CDS 55.0%
CTTGGGAGATCACCAGCAAC+CGG - chr8_3:68019671-68019690 None:intergenic 55.0%
GGTGATCTCCCAAGTGCTAG+TGG + chr8_3:68019677-68019696 Msa1304820:CDS 55.0%
! AGGCTGGTCCAGAATCTGCG+TGG + chr8_3:68014558-68014577 Msa1304820:CDS 60.0%
! GGCTGGTCCAGAATCTGCGT+GGG + chr8_3:68014559-68014578 Msa1304820:CDS 60.0%
GCTGGTCCAGAATCTGCGTG+GGG + chr8_3:68014560-68014579 Msa1304820:CDS 60.0%
GCTGCCATTCGGCGTACTCG+TGG + chr8_3:68017427-68017446 Msa1304820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 68014056 68020503 68014056 ID=Msa1304820;Name=Msa1304820
chr8_3 mRNA 68014056 68020503 68014056 ID=Msa1304820-mRNA-1;Parent=Msa1304820;Name=Msa1304820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=212|1|1|1|0.77|0.6|10|515|298
chr8_3 exon 68014056 68014194 68014056 ID=Msa1304820-mRNA-1:exon:20970;Parent=Msa1304820-mRNA-1
chr8_3 exon 68014439 68014667 68014439 ID=Msa1304820-mRNA-1:exon:20971;Parent=Msa1304820-mRNA-1
chr8_3 exon 68017231 68017296 68017231 ID=Msa1304820-mRNA-1:exon:20972;Parent=Msa1304820-mRNA-1
chr8_3 exon 68017409 68017492 68017409 ID=Msa1304820-mRNA-1:exon:20973;Parent=Msa1304820-mRNA-1
chr8_3 exon 68017763 68017885 68017763 ID=Msa1304820-mRNA-1:exon:20974;Parent=Msa1304820-mRNA-1
chr8_3 exon 68018906 68018958 68018906 ID=Msa1304820-mRNA-1:exon:20975;Parent=Msa1304820-mRNA-1
chr8_3 exon 68019108 68019157 68019108 ID=Msa1304820-mRNA-1:exon:20976;Parent=Msa1304820-mRNA-1
chr8_3 exon 68019239 68019339 68019239 ID=Msa1304820-mRNA-1:exon:20977;Parent=Msa1304820-mRNA-1
chr8_3 exon 68019512 68020157 68019512 ID=Msa1304820-mRNA-1:exon:20978;Parent=Msa1304820-mRNA-1
chr8_3 exon 68020371 68020503 68020371 ID=Msa1304820-mRNA-1:exon:20979;Parent=Msa1304820-mRNA-1
chr8_3 five_prime_UTR 68014056 68014194 68014056 ID=Msa1304820-mRNA-1:five_prime_utr;Parent=Msa1304820-mRNA-1
chr8_3 five_prime_UTR 68014439 68014511 68014439 ID=Msa1304820-mRNA-1:five_prime_utr;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68014512 68014667 68014512 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68017231 68017296 68017231 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68017409 68017492 68017409 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68017763 68017885 68017763 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68018906 68018958 68018906 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68019108 68019157 68019108 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68019239 68019339 68019239 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 CDS 68019512 68019775 68019512 ID=Msa1304820-mRNA-1:cds;Parent=Msa1304820-mRNA-1
chr8_3 three_prime_UTR 68019776 68020157 68019776 ID=Msa1304820-mRNA-1:three_prime_utr;Parent=Msa1304820-mRNA-1
chr8_3 three_prime_UTR 68020371 68020503 68020371 ID=Msa1304820-mRNA-1:three_prime_utr;Parent=Msa1304820-mRNA-1
Gene Sequence

>Msa1304820

ATGCGGAATAAAGAACCGGTTTTGGATGATGGGGAAGTAGAGTATGAGGCTGGTCCAGAATCTGCGTGGGGTAATTTTGAGGATGATGATGTAATGCAGCAGCAATCTTCTATTCAGGATGATGAAGCCAAGAAATTTCCGTTTGTGGGTGATAAGGAACCACTATCTAGCTTGGCTGCTGAATATCAATCAGGCAGTCCTATATTACTGGAGAAAATCAAGGTGCTTGATGGGCAATATGCTGCCATTCGGCGTACTCGTGGAGATGGAAACTGCTTCTTTCGAGGCTTTATGTTTTCATACCTTGAGCATATTTTGGAAGCTCAAGACAGTGCAGAAATTGATCGCATCAAAGCCAATGTTGAGAGAAGTAGAAAAGCACTTCAGACCTTGGGTTATGCAGAATTGACTTTTGAAGATTTTTTTACGTTATTCCTTGAGCAGCTGGAAGACGTTATTCAAGGGAAAGAGACGTCCATAAGTCATGAGGAGCTTGTTATTAGAAGTCGAGATCAGTCAGTTTCAGATTATGTTGTTATGTTCTTCAGATTTGTTACATCTGCTGAAATACAGAAGCGCTCAGAATTTTTTGAACCTTTCATTATGGGCTTAACCAATACAACAGTTGAGCAGTTCTGCAAATCAGCTGTTGAGCCAATGGGAGAAGAGAGCGACCATGTTCACATTACCGCCCTTTCAGATGCATTGGGCATTCCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCACGCCGGTTGCTGGTGATCTCCCAAGTGCTAGTGGTAGCTCTGAAAAGAAGAATCCCTTCATCACATTACTATATCGTCCTGGTCACTATGATATCCTCTATCCAAAGTGA

Protein sequence

>Msa1304820

MRNKEPVLDDGEVEYEAGPESAWGNFEDDDVMQQQSSIQDDEAKKFPFVGDKEPLSSLAAEYQSGSPILLEKIKVLDGQYAAIRRTRGDGNCFFRGFMFSYLEHILEAQDSAEIDRIKANVERSRKALQTLGYAELTFEDFFTLFLEQLEDVIQGKETSISHEELVIRSRDQSVSDYVVMFFRFVTSAEIQKRSEFFEPFIMGLTNTTVEQFCKSAVEPMGEESDHVHITALSDALGIPIRVVYLDRSSCDTGGVSVNHHDFTPVAGDLPSASGSSEKKNPFITLLYRPGHYDILYPK*