AlfalfaGEDB | Msa0910830

M. sativa cultivar zhongmu-4 / Msa0910830

KEGG: K00512|K17854
GO: -
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910830	XP_003617772.1	69.307	505	145	6	1	498	1	502	0.0	733

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910830	sp\|O22307\|C71DB_LOTJA	55.485	474	197	7	34	498	18	486	0.0	527

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0910830	-0.812350	4.431873e-51	-8.615850e-47
Msa0004580	Msa0910830	0.847996	8.117634e-60	-8.615850e-47
Msa0004590	Msa0910830	0.852479	4.495168e-61	-8.615850e-47
Msa0004940	Msa0910830	0.803201	3.902351e-49	-8.615850e-47
Msa0004990	Msa0910830	0.802064	6.698395e-49	-8.615850e-47
Msa0006050	Msa0910830	-0.824005	1.020242e-53	-8.615850e-47
Msa0006700	Msa0910830	-0.803360	3.618934e-49	-8.615850e-47
Msa0010150	Msa0910830	0.825729	3.998426e-54	-8.615850e-47
Msa0011510	Msa0910830	0.816588	5.118849e-52	-8.615850e-47
Msa0012780	Msa0910830	0.839740	1.322083e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0910830	MtrunA17_Chr5g0446161	69.307	505	145	6	1	498	1	502	733
Msa0910830	MtrunA17_Chr2g0280261	75.983	483	114	2	20	502	20	500	726
Msa0910830	MtrunA17_Chr6g0463801	71.429	504	141	3	1	502	1	503	719
Msa0910830	MtrunA17_Chr5g0446151	67.723	505	154	5	1	498	1	503	707
Msa0910830	MtrunA17_Chr3g0101691	53.094	501	224	5	5	497	9	506	555
Msa0910830	MtrunA17_Chr3g0101711	53.131	495	223	4	11	498	14	506	547
Msa0910830	MtrunA17_Chr3g0101661	54.361	493	215	5	8	493	12	501	543
Msa0910830	MtrunA17_Chr3g0101721	52.632	494	226	4	11	498	14	505	540
Msa0910830	MtrunA17_Chr3g0101651	53.012	498	221	6	5	493	9	502	533
Msa0910830	MtrunA17_Chr3g0101731	50.499	501	231	6	4	496	10	501	530

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0910830	AT3G26310.1	39.069	494	289	7	7	493	5	493	1.22e-126	379
Msa0910830	AT3G26330.1	40.598	468	269	6	33	493	29	494	1.51e-122	368
Msa0910830	AT5G25140.1	38.990	495	292	6	6	495	3	492	7.29e-122	366
Msa0910830	AT3G26320.1	39.490	471	276	6	33	496	29	497	1.78e-121	365
Msa0910830	AT3G26300.1	38.124	501	296	9	7	498	5	500	5.84e-121	364
Msa0910830	AT5G25120.1	39.800	500	281	8	6	495	3	492	9.98e-121	363
Msa0910830	AT5G57260.1	40.000	470	269	7	36	494	31	498	1.28e-120	363
Msa0910830	AT3G26280.1	39.516	496	275	11	15	495	15	500	6.39e-120	361
Msa0910830	AT3G26280.2	39.516	496	275	11	15	495	32	517	7.51e-120	362
Msa0910830	AT3G26270.1	38.980	490	271	10	23	496	23	500	1.27e-118	358

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Find 96 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTCCTCCAGGGCCT+TGG	0.396332	6_2:+15825835	Msa0910830:CDS
AAAGCAACAACAGAAAATGG+TGG	0.675169	6_2:+15826497	Msa0910830:CDS
AAATGGAGGATTATTTCTTC+TGG	0.332583	6_2:+15825736	None:intergenic
AACAAAGCAACAACAGAAAA+TGG	0.294899	6_2:+15826494	Msa0910830:CDS
AACATTGCCTATGCACCCTA+TGG	0.512573	6_2:+15826089	Msa0910830:CDS
AAGGCCCTGGAGGAAGATTT+TGG	0.180711	6_2:-15825833	None:intergenic
AATAACGGATTTAATGTTGT+TGG	0.506999	6_2:-15826597	None:intergenic
AATATATCAAGGATGTTATG+AGG	0.552285	6_2:+15826345	Msa0910830:CDS
AATGAAACTTGTGAGATTAA+TGG	0.328925	6_2:+15827366	Msa0910830:CDS
AATGATAAGAATCAAAAGGA+TGG	0.525456	6_2:-15825763	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATAAGAATCAAAAGGATG+GGG	-	chr6_2:15825764-15825783	None:intergenic	30.0%
TCATTCTCTTTGCTACATTT+AGG	-	chr6_2:15825794-15825813	None:intergenic	30.0%
TGATGTATGCTTCCAAATAT+TGG	-	chr6_2:15825867-15825886	None:intergenic	30.0%
AGACAATTCTCTCATTCTAT+GGG	-	chr6_2:15825910-15825929	None:intergenic	30.0%
TAGACAATTCTCTCATTCTA+TGG	-	chr6_2:15825911-15825930	None:intergenic	30.0%
TTGAAATTTCTCCAAGTTGT+AGG	-	chr6_2:15825956-15825975	None:intergenic	30.0%
TTGACAAAATGTGAGATCTT+TGG	-	chr6_2:15826024-15826043	None:intergenic	30.0%
TATGTCATAATTTCTACACC+AGG	-	chr6_2:15826059-15826078	None:intergenic	30.0%
GGTGTAGAAATTATGACATA+CGG	+	chr6_2:15826059-15826078	Msa0910830:CDS	30.0%
GTTAAGAAAGATATGCACAT+TGG	+	chr6_2:15826127-15826146	Msa0910830:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	15825738	15827755	15825738	ID=Msa0910830;Name=Msa0910830
chr6_2	mRNA	15825738	15827755	15825738	ID=Msa0910830-mRNA-1;Parent=Msa0910830;Name=Msa0910830-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|502
chr6_2	exon	15825738	15826622	15825738	ID=Msa0910830-mRNA-1:exon:3500;Parent=Msa0910830-mRNA-1
chr6_2	exon	15827132	15827755	15827132	ID=Msa0910830-mRNA-1:exon:3501;Parent=Msa0910830-mRNA-1
chr6_2	CDS	15825738	15826622	15825738	ID=Msa0910830-mRNA-1:cds;Parent=Msa0910830-mRNA-1
chr6_2	CDS	15827132	15827755	15827132	ID=Msa0910830-mRNA-1:cds;Parent=Msa0910830-mRNA-1

Gene Sequence

>Msa0910830

ATGGAGGATTATTTCTTCTGGTTCCCCATCCTTTTGATTCTTATCATTTTGATCCTAAATGTAGCAAAGAGAATGAAAAGTAAAACAATAATTACCCAAAATCTTCCTCCAGGGCCTTGGAAGCTACCAATATTTGGAAGCATACATCACCTCATTGGCTCCATACCACCCCATAGAATGAGAGAATTGTCTAAAAAATATGGCCCTATCATGCACCTACAACTTGGAGAAATTTCAACTATAGTTGTTTCTTCAAAAGAAATTGTTAAAGAGGTGATGAAAACCAAAGATCTCACATTTTGTCAAAGACCTAGCTCTCCTGGTGTAGAAATTATGACATACGGTCGCACTAACATTGCCTATGCACCCTATGGAGACTATTGGAGACAGTTAAGAAAGATATGCACATTGGAGTTGTTGAGTGCTAAACGTGTGAGATCATTCCAATCAACTAGGGAGCAAGAGGTGTCAAATTTAATAAAAAATATTTCTATAAACACTGGATCTATTATCAACCTCACTGATGAAATTTTTTCCATGACATTTAACATTATTTCAAGGGCAGCATTTGGTGACAAATATTGCAAGGAGCAAAAAGCATATATCAAATATATCAAGGATGTTATGAGGTCAGCAGAGAGTTTTAGTGTCACTAATTTGTTTCCCTCTCAACATTGGCTACATGTGATAACTGGGGTGATACATAAAGCCAAAAAAGTTCATAGAATTGGTGATACGATTCTTGAAACTCTCATCAACAAAGCAACAACAGAAAATGGTGGAGATGGAAGTCTTTTGTCCTATCTTCTGAATCTCAATGATCCTCACTCTTCTAACTCCAATCAATTTCATTTGACAACCAACAACATTAAATCCGTTATTCAGGATATAATTTTTGGTGGAAGTGATACATCATCTACAACTTTAGATTGGGCATTTTCAGAAATGATGAAAACCCCAAGAGTGCTAAAAAAGGCTCAAGCAGAAGTTAGACAAGTTTTTGGAACCAGGGGATATGTTGATGAAACAAATCTTCAAGAACTCAAATTTCTAAAAGCAGTAATTAAAGAAACCCTAAGAATGCACCCTCCTAGTCCTTTACTACTTCCAAGAGAGTGTAATGAAACTTGTGAGATTAATGGATACACAATACCAGCTGGAACACAAGTGCTTGTGAATGTTTGGGCAATTGGAAGAGACCAAAAATATTGGAATGAAGGAGAAAAGTTTTATCCTGAGAGGTTTATGGATTGTCCAATTGATTACAAAGGGTCTAATTTTGAGTTCTTACCTTTTGGTGCAGGAAGGAGAATATGTCCAGGCATATCTTTTGCTGAACCAAATGTAGAACTTCCTCTTGCACAGTTGTTATACTATTTTAATTGGGAACTTCCCTATGGAACTAGTCATGAAGATTTTGACATGACTGAAGCCTTTGGTGTTTCCTTGAAAAGGAAAAGTGATCTATTTCTAATTCCACTTCTTTTCGATCCTAAAACTCTTGAATAA

Protein sequence

>Msa0910830

MEDYFFWFPILLILIILILNVAKRMKSKTIITQNLPPGPWKLPIFGSIHHLIGSIPPHRMRELSKKYGPIMHLQLGEISTIVVSSKEIVKEVMKTKDLTFCQRPSSPGVEIMTYGRTNIAYAPYGDYWRQLRKICTLELLSAKRVRSFQSTREQEVSNLIKNISINTGSIINLTDEIFSMTFNIISRAAFGDKYCKEQKAYIKYIKDVMRSAESFSVTNLFPSQHWLHVITGVIHKAKKVHRIGDTILETLINKATTENGGDGSLLSYLLNLNDPHSSNSNQFHLTTNNIKSVIQDIIFGGSDTSSTTLDWAFSEMMKTPRVLKKAQAEVRQVFGTRGYVDETNLQELKFLKAVIKETLRMHPPSPLLLPRECNETCEINGYTIPAGTQVLVNVWAIGRDQKYWNEGEKFYPERFMDCPIDYKGSNFEFLPFGAGRRICPGISFAEPNVELPLAQLLYYFNWELPYGTSHEDFDMTEAFGVSLKRKSDLFLIPLLFDPKTLE*