AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274250 MtrunA17_Chr2g0284631 96.739 276 9 0 1 276 53 328 0.0 549
Msa0274250 MtrunA17_Chr2g0284581 70.221 272 74 2 1 272 1 265 1.03e-141 399
Msa0274250 MtrunA17_Chr2g0284591 66.912 272 81 2 1 272 1 263 3.00e-134 380
Msa0274250 MtrunA17_Chr8g0379911 65.091 275 89 2 1 275 1 268 5.76e-134 379
Msa0274250 MtrunA17_Chr8g0379901 63.504 274 94 1 1 274 1 268 1.04e-129 369
Msa0274250 MtrunA17_Chr2g0284611 64.706 272 89 2 1 272 1 265 2.73e-125 357
Msa0274250 MtrunA17_Chr2g0284601 69.955 223 61 1 50 272 1 217 7.96e-116 332
Msa0274250 MtrunA17_Chr4g0044201 52.083 240 100 2 17 254 13 239 8.87e-90 267
Msa0274250 MtrunA17_Chr5g0435051 50.211 237 115 2 32 268 33 266 9.91e-84 252
Msa0274250 MtrunA17_Chr3g0079421 51.037 241 114 2 32 269 19 258 1.08e-83 251
Msa0274250 MtrunA17_Chr7g0217331 50.467 214 105 1 39 252 37 249 7.93e-76 232
Msa0274250 MtrunA17_Chr4g0001221 55.814 215 94 1 35 249 71 284 4.27e-74 228
Msa0274250 MtrunA17_Chr2g0333771 50.211 237 114 2 37 273 78 310 3.50e-73 226
Msa0274250 MtrunA17_Chr1g0201331 50.000 232 114 2 19 249 53 283 5.22e-68 213
Msa0274250 MtrunA17_Chr5g0426131 46.693 257 118 6 16 258 5 256 1.03e-65 206
Msa0274250 MtrunA17_Chr1g0184541 39.111 225 132 2 39 259 62 285 1.43e-49 165
Msa0274250 MtrunA17_Chr4g0001111 53.378 148 68 1 35 182 71 217 1.27e-40 140
Msa0274250 MtrunA17_Chr4g0001161 51.079 139 67 1 52 190 1 138 3.90e-33 118
Msa0274250 MtrunA17_Chr8g0340161 34.529 223 138 4 38 252 18 240 3.09e-27 105
Msa0274250 MtrunA17_Chr1g0188771 33.468 248 146 6 27 258 12 256 2.73e-26 103
Msa0274250 MtrunA17_Chr1g0146161 34.052 232 137 9 38 258 18 244 7.51e-26 102
Msa0274250 MtrunA17_Chr2g0331261 33.784 222 140 3 34 248 15 236 9.05e-26 102
Msa0274250 MtrunA17_Chr1g0146171 35.111 225 135 7 38 254 18 239 1.03e-25 102
Msa0274250 MtrunA17_Chr4g0001121 58.333 72 30 0 178 249 6 77 7.36e-25 95.5
Msa0274250 MtrunA17_Chr6g0478191 31.452 248 148 7 27 258 12 253 9.56e-24 97.1
Msa0274250 MtrunA17_Chr5g0399341 34.764 233 135 8 38 257 18 246 3.43e-23 95.1
Msa0274250 MtrunA17_Chr7g0264111 30.120 249 146 6 21 248 28 269 5.95e-22 92.8
Msa0274250 MtrunA17_Chr4g0001151 45.522 134 51 3 52 182 1 115 6.24e-22 93.2
Msa0274250 MtrunA17_Chr7g0264961 31.356 236 140 6 38 257 20 249 1.52e-21 90.9
Msa0274250 MtrunA17_Chr3g0145671 29.778 225 143 4 39 248 37 261 3.10e-21 90.5
Msa0274250 MtrunA17_Chr5g0436701 30.275 218 130 6 42 240 58 272 1.49e-20 89.0
Msa0274250 MtrunA17_Chr1g0199731 28.253 269 159 7 4 248 11 269 2.43e-20 88.2
Msa0274250 MtrunA17_Chr2g0326621 29.362 235 142 6 37 248 38 271 5.89e-20 87.0
Msa0274250 MtrunA17_Chr5g0397391 28.571 245 152 7 19 240 25 269 7.74e-20 87.0
Msa0274250 MtrunA17_Chr1g0212671 30.303 231 151 4 38 258 20 250 7.86e-20 86.3
Msa0274250 MtrunA17_Chr4g0006001 29.310 232 141 7 28 240 45 272 5.05e-19 84.7
Msa0274250 MtrunA17_Chr3g0113211 29.358 218 132 6 42 240 58 272 7.34e-19 84.3
Msa0274250 MtrunA17_Chr4g0030861 29.464 224 150 4 44 260 26 248 9.06e-19 83.2
Msa0274250 MtrunA17_Chr8g0386961 27.419 248 151 7 19 240 25 269 2.56e-18 82.8
Msa0274250 MtrunA17_Chr4g0029071 28.390 236 142 7 37 248 37 269 1.25e-16 77.8
Msa0274250 MtrunA17_Chr7g0222791 28.947 228 152 4 28 248 13 237 1.60e-15 74.3
Msa0274250 MtrunA17_Chr4g0020781 30.460 174 118 2 75 246 20 192 1.34e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274250 AT4G18910.1 62.934 259 83 2 25 276 38 290 2.76e-117 338
Msa0274250 AT4G19030.1 58.456 272 100 2 11 275 27 292 2.37e-114 331
Msa0274250 AT1G31885.1 52.708 277 113 3 1 259 1 277 3.18e-101 298
Msa0274250 AT1G31885.2 57.399 223 81 2 51 259 1 223 4.51e-92 273
Msa0274250 AT5G37820.1 51.636 275 121 3 4 272 2 270 5.44e-92 274
Msa0274250 AT5G37820.2 51.636 275 121 3 4 272 38 306 2.34e-91 273
Msa0274250 AT5G37810.1 50.545 275 124 3 4 272 2 270 2.50e-90 270
Msa0274250 AT2G34390.1 53.030 264 107 6 1 248 1 263 1.79e-86 260
Msa0274250 AT4G18910.2 67.568 185 53 1 25 202 38 222 3.98e-86 256
Msa0274250 AT4G19030.3 61.111 198 70 1 11 201 27 224 2.84e-84 252
Msa0274250 AT2G34390.2 56.481 216 86 2 40 248 7 221 2.29e-83 250
Msa0274250 AT4G19030.2 59.777 179 65 1 11 182 27 205 1.29e-73 224
Msa0274250 AT1G80760.1 53.070 228 103 2 34 261 75 298 1.53e-73 228
Msa0274250 AT4G10380.1 50.885 226 110 1 35 260 74 298 2.32e-67 211
Msa0274250 AT2G34390.3 53.211 218 85 6 1 202 1 217 1.23e-66 207
Msa0274250 AT2G34390.4 53.000 200 77 6 1 184 1 199 3.96e-59 188
Msa0274250 AT3G06100.1 41.096 219 125 4 38 254 45 261 2.36e-49 164
Msa0274250 AT3G06100.2 41.395 215 122 4 42 254 1 213 1.57e-48 161
Msa0274250 AT1G31885.3 51.261 119 54 1 1 115 1 119 4.93e-35 123
Msa0274250 AT3G16240.1 35.874 223 130 6 34 246 14 233 6.65e-30 113
Msa0274250 AT2G29870.1 56.977 86 37 0 154 239 20 105 7.49e-29 107
Msa0274250 AT5G47450.1 34.091 220 138 3 34 246 14 233 1.03e-28 110
Msa0274250 AT4G17340.1 32.911 237 149 5 34 260 14 250 3.85e-27 106
Msa0274250 AT3G06100.3 39.716 141 83 2 115 254 41 180 5.67e-27 104
Msa0274250 AT3G26520.1 33.621 232 142 4 38 257 21 252 5.67e-26 103
Msa0274250 AT1G17810.1 37.500 168 101 2 91 254 86 253 1.28e-24 99.8
Msa0274250 AT2G25810.1 34.934 229 138 7 38 258 18 243 1.03e-23 97.1
Msa0274250 AT4G35100.1 30.418 263 158 6 5 248 6 262 4.74e-23 95.9
Msa0274250 AT4G35100.2 30.418 263 158 6 5 248 6 262 4.74e-23 95.9
Msa0274250 AT2G16850.1 31.556 225 139 5 39 248 36 260 2.61e-22 94.0
Msa0274250 AT1G73190.1 35.758 165 104 1 92 254 87 251 3.17e-22 93.6
Msa0274250 AT2G36830.1 32.900 231 144 5 38 257 20 250 3.74e-22 92.8
Msa0274250 AT5G60660.1 29.114 237 141 6 36 248 36 269 7.42e-21 90.1
Msa0274250 AT2G39010.1 29.310 232 141 6 39 248 38 268 4.14e-20 88.2
Msa0274250 AT4G00430.1 29.870 231 141 5 28 240 42 269 4.96e-20 87.8
Msa0274250 AT2G37170.2 28.755 233 145 6 37 248 78 310 1.04e-19 87.4
Msa0274250 AT2G37170.1 28.755 233 145 6 37 248 35 267 1.08e-19 86.7
Msa0274250 AT3G54820.1 27.612 268 159 8 13 248 4 268 2.91e-19 85.5
Msa0274250 AT1G01620.2 31.915 188 108 4 69 240 13 196 1.46e-18 82.4
Msa0274250 AT1G01620.1 29.817 218 130 5 42 240 55 268 1.73e-18 83.6
Msa0274250 AT2G37180.1 27.426 237 143 7 37 248 35 267 1.76e-18 83.6
Msa0274250 AT4G01470.1 29.741 232 151 4 38 257 20 251 1.87e-18 82.8
Msa0274250 AT3G61430.2 29.032 217 133 5 42 240 55 268 1.99e-18 83.2
Msa0274250 AT3G61430.1 29.032 217 133 5 42 240 55 268 1.99e-18 83.2
Msa0274250 AT3G53420.1 27.138 269 156 8 17 248 4 269 2.30e-18 83.2
Msa0274250 AT3G53420.2 27.138 269 156 8 17 248 4 269 2.30e-18 83.2
Msa0274250 AT4G23400.1 29.493 217 132 6 42 240 56 269 6.06e-18 82.0
Msa0274250 AT2G45960.1 27.706 231 146 5 28 240 41 268 3.70e-17 79.7
Msa0274250 AT2G45960.3 26.568 271 161 8 28 274 41 297 2.20e-15 75.1
Msa0274250 AT2G45960.2 27.962 211 134 4 28 223 41 248 2.77e-14 71.6
Msa0274250 AT3G47440.1 25.751 233 162 4 22 246 7 236 6.93e-14 70.1

Find 61 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTGTTGGTCACATTTC+TGG 0.074867 2_3:-6043809 Msa0274250:CDS
ACCATAATTATACAGGATTA+TGG 0.226922 2_3:-6041552 Msa0274250:CDS
ACCCTCAGACTTATATTTAA+TGG 0.231339 2_3:-6043431 Msa0274250:CDS
TCCTGGAATTGCATTTGCTT+GGG 0.267287 2_3:-6043855 Msa0274250:CDS
TATTTGATTGCACCAATTCT+AGG 0.280076 2_3:-6041526 Msa0274250:CDS
CTCTGTGCCCCTTCTCAAAA+AGG 0.290172 2_3:-6044109 Msa0274250:intron
TCCATAATCCTGTATAATTA+TGG 0.291862 2_3:+6041551 None:intergenic
ATCTTGGTGAGCTCAATCTT+AGG 0.323061 2_3:+6041436 None:intergenic
TGCTTGGGGATTCACTGTTA+TGG 0.330467 2_3:-6043840 Msa0274250:CDS
ATGAATCCAGCAAGGAGTTT+AGG 0.360808 2_3:-6041589 Msa0274250:CDS
TTCCTGGAATTGCATTTGCT+TGG 0.369726 2_3:-6043856 Msa0274250:CDS
GCAGGTCCTAAACTCCTTGC+TGG 0.373011 2_3:+6041583 None:intergenic
ATAATAGATATATTGTTTGC+GGG 0.376379 2_3:-6042672 Msa0274250:CDS
CCCCAAGCAAATGCAATTCC+AGG 0.380656 2_3:+6043854 None:intergenic
GATCATGTAGTAACACTTCC+TGG 0.391987 2_3:-6043872 Msa0274250:CDS
TTCATCGATGCTCCTGTCAT+TGG 0.406249 2_3:+6041607 None:intergenic
ACATACATGATGATATTTGC+AGG 0.406323 2_3:-6043926 Msa0274250:CDS
CCTAGCAAAGCTCCTAGAAT+TGG 0.412209 2_3:+6041514 None:intergenic
AAACATTACCGCTCTATTAT+CGG 0.416254 2_3:+6043298 None:intergenic
CCTGGAATTGCATTTGCTTG+GGG 0.438227 2_3:-6043854 Msa0274250:CDS
TTTCAGATTGGTGAATTAGC+TGG 0.444428 2_3:-6042717 Msa0274250:intron
ATTTCAACTCACTTGCTTGA+AGG 0.459719 2_3:+6043733 None:intergenic
TTTCAACTCACTTGCTTGAA+GGG 0.467082 2_3:+6043734 None:intergenic
CTGCAGTAATTACAAACATA+AGG 0.467928 2_3:+6043327 None:intergenic
AATTAGCTGGACTTGCGATT+GGG 0.471618 2_3:-6042704 Msa0274250:CDS
GAATTAGCTGGACTTGCGAT+TGG 0.472494 2_3:-6042705 Msa0274250:CDS
AATAATAGATATATTGTTTG+CGG 0.478293 2_3:-6042673 Msa0274250:CDS
ACCTGCTCCTTCTGAGGAAA+GGG 0.479226 2_3:+6041410 None:intergenic
GAGGGTTCCACTTGCTAATG+TGG 0.479931 2_3:+6043448 None:intergenic
TATATGATAGCTCAGGTCCT+TGG 0.491184 2_3:-6043473 Msa0274250:CDS
TCAGAAAACAATGAAGAGTC+AGG 0.495664 2_3:-6044141 Msa0274250:CDS
GCAAAAGCAATGGTAACAGC+AGG 0.496624 2_3:+6043773 None:intergenic
TCTGAGGAAAGGGACAATCT+TGG 0.500492 2_3:+6041420 None:intergenic
TAGGAGCTTTGCTAGGTACA+TGG 0.502318 2_3:-6041507 Msa0274250:CDS
ACCTGAGCTATCATATAAGC+TGG 0.513440 2_3:+6043479 None:intergenic
TCCCTTTCCTCAGAAGGAGC+AGG 0.522202 2_3:-6041411 Msa0274250:CDS
TTTATTGGAACACTTCCAGC+TGG 0.523797 2_3:-6043395 Msa0274250:CDS
TCTTGGTGAGCTCAATCTTA+GGG 0.525478 2_3:+6041437 None:intergenic
AGATTGTCCCTTTCCTCAGA+AGG 0.528762 2_3:-6041417 Msa0274250:CDS
ACCATTAAATATAAGTCTGA+GGG 0.536139 2_3:+6043430 None:intergenic
CACCATTAAATATAAGTCTG+AGG 0.544607 2_3:+6043429 None:intergenic
GCTTGCAAGTTAGAACCAGC+TGG 0.544915 2_3:+6043380 None:intergenic
AATATAGTTGGTAGCAGAAG+TGG 0.548823 2_3:-6043954 Msa0274250:intron
ACCAGCTTATATGATAGCTC+AGG 0.564135 2_3:-6043480 Msa0274250:CDS
CCAATTCTAGGAGCTTTGCT+AGG 0.564730 2_3:-6041514 Msa0274250:CDS
ATAGTTGGTAGCAGAAGTGG+TGG 0.567543 2_3:-6043951 Msa0274250:intron
CACTTGCTAATGTGGATCCA+AGG 0.576613 2_3:+6043456 None:intergenic
TAATAGATATATTGTTTGCG+GGG 0.592041 2_3:-6042671 Msa0274250:intron
CTTGAAGGGAAATCTTCTAG+TGG 0.592191 2_3:+6043748 None:intergenic
GCTACGACCTGCTCCTTCTG+AGG 0.600095 2_3:+6041404 None:intergenic
AAGCAATGAAATTCATCATG+AGG 0.601214 2_3:-6044190 Msa0274250:CDS
GACCTGCTCCTTCTGAGGAA+AGG 0.601572 2_3:+6041409 None:intergenic
TCTAGTGGAAGCAAAAGCAA+TGG 0.634655 2_3:+6043763 None:intergenic
CATACATGATGATATTTGCA+GGG 0.634898 2_3:-6043925 Msa0274250:CDS
CTTGGATCCACATTAGCAAG+TGG 0.643702 2_3:-6043455 Msa0274250:CDS
CATTACCGCTCTATTATCGG+TGG 0.651247 2_3:+6043301 None:intergenic
CAAAAGCAATGGTAACAGCA+GGG 0.665784 2_3:+6043774 None:intergenic
TTAGGGAGCTCATCGCACGT+TGG 0.679497 2_3:+6041454 None:intergenic
GAGCATCGATGAATCCAGCA+AGG 0.685272 2_3:-6041597 Msa0274250:CDS
TAGTTGGTAGCAGAAGTGGT+GGG 0.737512 2_3:-6043950 Msa0274250:CDS
AGTAGCCACCGATAATAGAG+CGG 0.741536 2_3:-6043306 Msa0274250:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATTACAAAAAAAAAT+TGG - chr2_3:6041620-6041639 Msa0274250:intron 10.0%
!! ATTATATTTGTTTAACAAAT+TGG - chr2_3:6042399-6042418 Msa0274250:intron 10.0%
!! TTATATTTGTTTAACAAATT+GGG - chr2_3:6042400-6042419 Msa0274250:intron 10.0%
!!! ACTTCTAATATTATTTTTTT+GGG + chr2_3:6042751-6042770 None:intergenic 10.0%
!!! AACTTCTAATATTATTTTTT+TGG + chr2_3:6042752-6042771 None:intergenic 10.0%
!!! AATAATTTTAAATTGTTTCA+TGG - chr2_3:6042829-6042848 Msa0274250:intron 10.0%
!! ACTAAAAAATATATTCAATT+AGG + chr2_3:6042985-6043004 None:intergenic 10.0%
!! TTTAAAAGTAAAAAATAAAC+GGG + chr2_3:6043465-6043484 None:intergenic 10.0%
!!! TTGGTTATCTAAAATAAAAT+TGG - chr2_3:6041922-6041941 Msa0274250:intron 15.0%
!!! TTATCTAAAATAAAATTGGA+AGG - chr2_3:6041926-6041945 Msa0274250:intron 15.0%
!!! CTATTAATAATACTCTTTTA+GGG + chr2_3:6042010-6042029 None:intergenic 15.0%
!!! TCTATTAATAATACTCTTTT+AGG + chr2_3:6042011-6042030 None:intergenic 15.0%
!! TATATTTGTTTAACAAATTG+GGG - chr2_3:6042401-6042420 Msa0274250:intron 15.0%
!! ATATAAGTTTAATCATAAGT+TGG + chr2_3:6042471-6042490 None:intergenic 15.0%
!! AACTTATATAATGATATCTT+TGG - chr2_3:6042482-6042501 Msa0274250:intron 15.0%
!! ACTTATATAATGATATCTTT+GGG - chr2_3:6042483-6042502 Msa0274250:intron 15.0%
!!! CATTTTTTTTTTTTTCAGAT+TGG - chr2_3:6042883-6042902 Msa0274250:intron 15.0%
!! AATAATAGATATATTGTTTG+CGG - chr2_3:6042939-6042958 Msa0274250:intron 15.0%
!! ATCAAATTAAATAGCAATAA+TGG - chr2_3:6043775-6043794 Msa0274250:CDS 15.0%
!! TCAAATTAAATAGCAATAAT+GGG - chr2_3:6043776-6043795 Msa0274250:CDS 15.0%
!!! TTTTTATACCATAATTATAC+AGG - chr2_3:6044053-6044072 Msa0274250:intron 15.0%
!! AAAAGAGACTAAAAACTTAA+GGG + chr2_3:6041558-6041577 None:intergenic 20.0%
!! AAAAAGAGACTAAAAACTTA+AGG + chr2_3:6041559-6041578 None:intergenic 20.0%
!!! TTAAGTTTTTAGTCTCTTTT+TGG - chr2_3:6041558-6041577 Msa0274250:CDS 20.0%
!!! CAAAAAAAAATTGGTTTTGT+TGG - chr2_3:6041629-6041648 Msa0274250:intron 20.0%
!! TAATAATTAAAACATGCATG+TGG - chr2_3:6041954-6041973 Msa0274250:intron 20.0%
!!! ATTCATTTTAACTTTGTTGA+AGG - chr2_3:6042108-6042127 Msa0274250:intron 20.0%
!! TCTACTCTTACTAAATAAAT+TGG - chr2_3:6042337-6042356 Msa0274250:intron 20.0%
!! TATATAAAATGTTGTCATGT+TGG - chr2_3:6042637-6042656 Msa0274250:intron 20.0%
!! ATAATAGATATATTGTTTGC+GGG - chr2_3:6042940-6042959 Msa0274250:intron 20.0%
!!! AATATATAACTCTTTTGTAG+AGG - chr2_3:6043331-6043350 Msa0274250:CDS 20.0%
!!! ATGTTTTAGCAAAAAAATAG+TGG + chr2_3:6043532-6043551 None:intergenic 20.0%
!! TAATTATGGTATAAAAAAGC+AGG + chr2_3:6044050-6044069 None:intergenic 20.0%
!!! AAAAGTTACCTTTTTGAGAA+GGG + chr2_3:6041514-6041533 None:intergenic 25.0%
! TGTTGGATATTGAATATAGT+TGG - chr2_3:6041646-6041665 Msa0274250:intron 25.0%
!!! ATGGTTTTGATTTATTCTGT+TGG - chr2_3:6041791-6041810 Msa0274250:intron 25.0%
!!! TCTTTTAGGGTAATTACTAA+TGG + chr2_3:6041997-6042016 None:intergenic 25.0%
! ACCATTAAATATAAGTCTGA+GGG + chr2_3:6042185-6042204 None:intergenic 25.0%
!! ATCTTTGGGAATAAACTAAT+TGG - chr2_3:6042497-6042516 Msa0274250:intron 25.0%
! GAATTTCTTCAAAATAGTAG+TGG - chr2_3:6042522-6042541 Msa0274250:intron 25.0%
! TAATAGATATATTGTTTGCG+GGG - chr2_3:6042941-6042960 Msa0274250:intron 25.0%
!! TTTTTGCTTATATTTGTGAG+CGG + chr2_3:6043192-6043211 None:intergenic 25.0%
! CATTCAATATATGATGTATG+TGG - chr2_3:6043227-6043246 Msa0274250:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr2_3:6043266-6043285 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr2_3:6043301-6043320 Msa0274250:intron 25.0%
! TTTGCTAAAACATGATTAGA+TGG - chr2_3:6043539-6043558 Msa0274250:intron 25.0%
! CATTTAGCCCATAAAAAATT+GGG + chr2_3:6043816-6043835 None:intergenic 25.0%
!!! CAATTTTTTATGGGCTAAAT+GGG - chr2_3:6043815-6043834 Msa0274250:CDS 25.0%
!! AAAAAAACGAGTGTGTTTTT+GGG - chr2_3:6043846-6043865 Msa0274250:CDS 25.0%
! ACCATAATTATACAGGATTA+TGG - chr2_3:6044060-6044079 Msa0274250:intron 25.0%
! TCCATAATCCTGTATAATTA+TGG + chr2_3:6044064-6044083 None:intergenic 25.0%
AAGCAATGAAATTCATCATG+AGG - chr2_3:6041422-6041441 Msa0274250:CDS 30.0%
!! AAAGTTACCTTTTTGAGAAG+GGG + chr2_3:6041513-6041532 None:intergenic 30.0%
!! GAAAAGTTACCTTTTTGAGA+AGG + chr2_3:6041515-6041534 None:intergenic 30.0%
ACATACATGATGATATTTGC+AGG - chr2_3:6041686-6041705 Msa0274250:intron 30.0%
CATACATGATGATATTTGCA+GGG - chr2_3:6041687-6041706 Msa0274250:intron 30.0%
CATCTTATGCAATATGCATT+TGG - chr2_3:6041903-6041922 Msa0274250:intron 30.0%
ACCCTCAGACTTATATTTAA+TGG - chr2_3:6042181-6042200 Msa0274250:intron 30.0%
CACCATTAAATATAAGTCTG+AGG + chr2_3:6042186-6042205 None:intergenic 30.0%
! GGTGAAGATGATCATTTTAT+TGG - chr2_3:6042202-6042221 Msa0274250:intron 30.0%
CTGCAGTAATTACAAACATA+AGG + chr2_3:6042288-6042307 None:intergenic 30.0%
AAACATTACCGCTCTATTAT+CGG + chr2_3:6042317-6042336 None:intergenic 30.0%
! TTATTTGTTCCAACGACTTT+TGG - chr2_3:6042700-6042719 Msa0274250:CDS 30.0%
AATTTCATTCCAAAAGTCGT+TGG + chr2_3:6042712-6042731 None:intergenic 30.0%
!!! CTTCACTTTTTTCAAAACCA+CGG - chr2_3:6043038-6043057 Msa0274250:intron 30.0%
! TTTGGAGCTTCATAAAATCA+CGG - chr2_3:6043091-6043110 Msa0274250:intron 30.0%
CCATTTAGCCCATAAAAAAT+TGG + chr2_3:6043817-6043836 None:intergenic 30.0%
!!! CCAATTTTTTATGGGCTAAA+TGG - chr2_3:6043814-6043833 Msa0274250:CDS 30.0%
!!! CAAAAACACACTCGTTTTTT+TGG + chr2_3:6043847-6043866 None:intergenic 30.0%
! CAAAAAAACGAGTGTGTTTT+TGG - chr2_3:6043845-6043864 Msa0274250:CDS 30.0%
! ATATTTTACAGACCAATGAC+AGG - chr2_3:6043993-6044012 Msa0274250:intron 30.0%
TATTTGATTGCACCAATTCT+AGG - chr2_3:6044086-6044105 Msa0274250:intron 30.0%
! TGACTCTTCATTGTTTTCTG+AGG + chr2_3:6041472-6041491 None:intergenic 35.0%
TCAGAAAACAATGAAGAGTC+AGG - chr2_3:6041471-6041490 Msa0274250:CDS 35.0%
! CTTTTCTTTCCTTCTCTAGA+AGG - chr2_3:6041529-6041548 Msa0274250:CDS 35.0%
!! AATATAGTTGGTAGCAGAAG+TGG - chr2_3:6041658-6041677 Msa0274250:intron 35.0%
TATTCTGTTGGTCACATTTC+TGG - chr2_3:6041803-6041822 Msa0274250:intron 35.0%
TTTCAACTCACTTGCTTGAA+GGG + chr2_3:6041881-6041900 None:intergenic 35.0%
ATTTCAACTCACTTGCTTGA+AGG + chr2_3:6041882-6041901 None:intergenic 35.0%
TTGAAACTGAAACCATGAGT+TGG + chr2_3:6042057-6042076 None:intergenic 35.0%
!!! ATTATATGTTTTGACGCGCA+TGG + chr2_3:6042803-6042822 None:intergenic 35.0%
TTTCAGATTGGTGAATTAGC+TGG - chr2_3:6042895-6042914 Msa0274250:intron 35.0%
!!! ACTTTTTTCAAAACCACGGT+AGG - chr2_3:6043042-6043061 Msa0274250:intron 35.0%
! GATTTTATGAAGCTCCAAAG+TGG + chr2_3:6043090-6043109 None:intergenic 35.0%
GAGTTATATATTACACCCTC+CGG + chr2_3:6043323-6043342 None:intergenic 35.0%
!!! TCTTTTGTAGAGGTGTCAAA+TGG - chr2_3:6043341-6043360 Msa0274250:CDS 35.0%
!!! CTTTTGTAGAGGTGTCAAAT+GGG - chr2_3:6043342-6043361 Msa0274250:CDS 35.0%
! TCTGCAGCCCAATTTTAAAT+GGG + chr2_3:6043424-6043443 None:intergenic 35.0%
! ATCTGCAGCCCAATTTTAAA+TGG + chr2_3:6043425-6043444 None:intergenic 35.0%
AAGTAAAAAATAAACGGGCC+AGG + chr2_3:6043460-6043479 None:intergenic 35.0%
!!! TGTTTTTGGGCTAGTTTTTG+AGG - chr2_3:6043859-6043878 Msa0274250:CDS 35.0%
AGAGTAGAGCTGTCAAAAAT+GGG + chr2_3:6043929-6043948 None:intergenic 35.0%
AAGAGTAGAGCTGTCAAAAA+TGG + chr2_3:6043930-6043949 None:intergenic 35.0%
! TTTTGACAGCTCTACTCTTT+TGG - chr2_3:6043931-6043950 Msa0274250:CDS 35.0%
GATCATGTAGTAACACTTCC+TGG - chr2_3:6041740-6041759 Msa0274250:intron 40.0%
TTCCTGGAATTGCATTTGCT+TGG - chr2_3:6041756-6041775 Msa0274250:intron 40.0%
TCCTGGAATTGCATTTGCTT+GGG - chr2_3:6041757-6041776 Msa0274250:intron 40.0%
CAAAAGCAATGGTAACAGCA+GGG + chr2_3:6041841-6041860 None:intergenic 40.0%
TCTAGTGGAAGCAAAAGCAA+TGG + chr2_3:6041852-6041871 None:intergenic 40.0%
CTTGAAGGGAAATCTTCTAG+TGG + chr2_3:6041867-6041886 None:intergenic 40.0%
CATGCATGTGGATGATAAGT+TGG - chr2_3:6041966-6041985 Msa0274250:intron 40.0%
CATTCTTCTGAACCAACTCA+TGG - chr2_3:6042042-6042061 Msa0274250:intron 40.0%
ACCAGCTTATATGATAGCTC+AGG - chr2_3:6042132-6042151 Msa0274250:intron 40.0%
ACCTGAGCTATCATATAAGC+TGG + chr2_3:6042136-6042155 None:intergenic 40.0%
TATATGATAGCTCAGGTCCT+TGG - chr2_3:6042139-6042158 Msa0274250:intron 40.0%
TTTATTGGAACACTTCCAGC+TGG - chr2_3:6042217-6042236 Msa0274250:intron 40.0%
TACATAGATGACACTCTGCA+GGG + chr2_3:6042675-6042694 None:intergenic 40.0%
AATTAGCTGGACTTGCGATT+GGG - chr2_3:6042908-6042927 Msa0274250:intron 40.0%
TTGTACACTTAGCGTGTGTT+TGG - chr2_3:6043010-6043029 Msa0274250:intron 40.0%
AAAACCACGGTAGGAAATCA+CGG - chr2_3:6043051-6043070 Msa0274250:intron 40.0%
GAGCTTCATAAAATCACGGT+AGG - chr2_3:6043095-6043114 Msa0274250:intron 40.0%
TGCTTATATTTGTGAGCGGA+GGG + chr2_3:6043188-6043207 None:intergenic 40.0%
TTGCTTATATTTGTGAGCGG+AGG + chr2_3:6043189-6043208 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr2_3:6043304-6043323 Msa0274250:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr2_3:6043305-6043324 Msa0274250:intron 40.0%
!!! AATTTTAAATGGGCTGGGCT+GGG + chr2_3:6043414-6043433 None:intergenic 40.0%
! AGCCCAGCCCATTTAAAATT+GGG - chr2_3:6043414-6043433 Msa0274250:CDS 40.0%
!! AGCCCAATTTTAAATGGGCT+GGG + chr2_3:6043419-6043438 None:intergenic 40.0%
TAGCCCATAAAAAATTGGGC+CGG + chr2_3:6043812-6043831 None:intergenic 40.0%
!! TTTTATGGGCTAAATGGGCT+TGG - chr2_3:6043820-6043839 Msa0274250:CDS 40.0%
! TTTATGGGCTAAATGGGCTT+GGG - chr2_3:6043821-6043840 Msa0274250:CDS 40.0%
! ATTAGCCCAAAATTTTGGGC+CGG + chr2_3:6043886-6043905 None:intergenic 40.0%
! GCCCAAAATTTTGGGCTAAT+GGG - chr2_3:6043886-6043905 Msa0274250:CDS 40.0%
! GCCCATTAGCCCAAAATTTT+GGG + chr2_3:6043890-6043909 None:intergenic 40.0%
!! AAAATTTTGGGCTAATGGGC+CGG - chr2_3:6043890-6043909 Msa0274250:CDS 40.0%
ATGAATCCAGCAAGGAGTTT+AGG - chr2_3:6044023-6044042 Msa0274250:intron 40.0%
TCTTGGTGAGCTCAATCTTA+GGG + chr2_3:6044178-6044197 None:intergenic 40.0%
ATCTTGGTGAGCTCAATCTT+AGG + chr2_3:6044179-6044198 None:intergenic 40.0%
! TAAGGGATGCCTTCTAGAGA+AGG + chr2_3:6041541-6041560 None:intergenic 45.0%
!! ATAGTTGGTAGCAGAAGTGG+TGG - chr2_3:6041661-6041680 Msa0274250:intron 45.0%
!! TAGTTGGTAGCAGAAGTGGT+GGG - chr2_3:6041662-6041681 Msa0274250:intron 45.0%
CCTGGAATTGCATTTGCTTG+GGG - chr2_3:6041758-6041777 Msa0274250:intron 45.0%
TGCTTGGGGATTCACTGTTA+TGG - chr2_3:6041772-6041791 Msa0274250:intron 45.0%
GCAAAAGCAATGGTAACAGC+AGG + chr2_3:6041842-6041861 None:intergenic 45.0%
! CACTTGCTAATGTGGATCCA+AGG + chr2_3:6042159-6042178 None:intergenic 45.0%
CTTGGATCCACATTAGCAAG+TGG - chr2_3:6042157-6042176 Msa0274250:intron 45.0%
AGTAGCCACCGATAATAGAG+CGG - chr2_3:6042306-6042325 Msa0274250:intron 45.0%
CATTACCGCTCTATTATCGG+TGG + chr2_3:6042314-6042333 None:intergenic 45.0%
CTACATAGATGACACTCTGC+AGG + chr2_3:6042676-6042695 None:intergenic 45.0%
GAATTAGCTGGACTTGCGAT+TGG - chr2_3:6042907-6042926 Msa0274250:intron 45.0%
ACACTTAGCGTGTGTTTGGA+AGG - chr2_3:6043014-6043033 Msa0274250:intron 45.0%
CACTTAGCGTGTGTTTGGAA+GGG - chr2_3:6043015-6043034 Msa0274250:intron 45.0%
! AGCTCCAAAGTGGAGCTTTT+GGG + chr2_3:6043080-6043099 None:intergenic 45.0%
! AAGCTCCAAAGTGGAGCTTT+TGG + chr2_3:6043081-6043100 None:intergenic 45.0%
AGTTTACAGCCCCAAAAGCA+CGG + chr2_3:6043143-6043162 None:intergenic 45.0%
!!! TGCTTTTGGGGCTGTAAACT+CGG - chr2_3:6043143-6043162 Msa0274250:intron 45.0%
AGAGGCCCGACTACATAAAT+GGG - chr2_3:6043384-6043403 Msa0274250:CDS 45.0%
!!! CAATTTTAAATGGGCTGGGC+TGG + chr2_3:6043415-6043434 None:intergenic 45.0%
! CAGCCCAGCCCATTTAAAAT+TGG - chr2_3:6043413-6043432 Msa0274250:CDS 45.0%
! CAGCCCAATTTTAAATGGGC+TGG + chr2_3:6043420-6043439 None:intergenic 45.0%
AAAAAATAAACGGGCCAGGC+CGG + chr2_3:6043456-6043475 None:intergenic 45.0%
AGCCCATAAAAAATTGGGCC+GGG + chr2_3:6043811-6043830 None:intergenic 45.0%
! TTAGCCCAAAATTTTGGGCC+GGG + chr2_3:6043885-6043904 None:intergenic 45.0%
! GGCCCAAAATTTTGGGCTAA+TGG - chr2_3:6043885-6043904 Msa0274250:CDS 45.0%
! GGCCCATTAGCCCAAAATTT+TGG + chr2_3:6043891-6043910 None:intergenic 45.0%
!! CAAAAATGGGCTGGGCTAAT+GGG + chr2_3:6043916-6043935 None:intergenic 45.0%
!! TCAAAAATGGGCTGGGCTAA+TGG + chr2_3:6043917-6043936 None:intergenic 45.0%
! AGAGCTGTCAAAAATGGGCT+GGG + chr2_3:6043924-6043943 None:intergenic 45.0%
TAGAGCTGTCAAAAATGGGC+TGG + chr2_3:6043925-6043944 None:intergenic 45.0%
TTCATCGATGCTCCTGTCAT+TGG + chr2_3:6044008-6044027 None:intergenic 45.0%
CCTAGCAAAGCTCCTAGAAT+TGG + chr2_3:6044101-6044120 None:intergenic 45.0%
! CCAATTCTAGGAGCTTTGCT+AGG - chr2_3:6044098-6044117 Msa0274250:intron 45.0%
TAGGAGCTTTGCTAGGTACA+TGG - chr2_3:6044105-6044124 Msa0274250:intron 45.0%
TCTGAGGAAAGGGACAATCT+TGG + chr2_3:6044195-6044214 None:intergenic 45.0%
AGATTGTCCCTTTCCTCAGA+AGG - chr2_3:6044195-6044214 Msa0274250:CDS 45.0%
!!! TTTGATTAAATATTTTTTAT+TGG - chr2_3:6042432-6042451 Msa0274250:intron 5.0%
!!! TTTTAAAAGTAAAAAATAAA+CGG + chr2_3:6043466-6043485 None:intergenic 5.0%
CTCTGTGCCCCTTCTCAAAA+AGG - chr2_3:6041503-6041522 Msa0274250:CDS 50.0%
CCCCAAGCAAATGCAATTCC+AGG + chr2_3:6041761-6041780 None:intergenic 50.0%
! GAGGGTTCCACTTGCTAATG+TGG + chr2_3:6042167-6042186 None:intergenic 50.0%
GCTTGCAAGTTAGAACCAGC+TGG + chr2_3:6042235-6042254 None:intergenic 50.0%
! GGAGGGTGTATGTGTGTGTT+TGG + chr2_3:6043171-6043190 None:intergenic 50.0%
!! TGTAGAGGTGTCAAATGGGC+TGG - chr2_3:6043346-6043365 Msa0274250:CDS 50.0%
GAGAGGCCCGACTACATAAA+TGG - chr2_3:6043383-6043402 Msa0274250:CDS 50.0%
GCTGGCCCATTTATGTAGTC+GGG + chr2_3:6043392-6043411 None:intergenic 50.0%
! GGCTGGCCCATTTATGTAGT+CGG + chr2_3:6043393-6043412 None:intergenic 50.0%
AAAAATAAACGGGCCAGGCC+GGG + chr2_3:6043455-6043474 None:intergenic 50.0%
!! ATAGCAATAATGGGCCAGCC+CGG - chr2_3:6043785-6043804 Msa0274250:CDS 50.0%
ATAAAAAATTGGGCCGGGCC+GGG + chr2_3:6043806-6043825 None:intergenic 50.0%
CATAAAAAATTGGGCCGGGC+CGG + chr2_3:6043807-6043826 None:intergenic 50.0%
!!! GGCCCGGCCCAATTTTTTAT+GGG - chr2_3:6043806-6043825 Msa0274250:CDS 50.0%
!!! TTGGGCTAGTTTTTGAGGCC+CGG - chr2_3:6043864-6043883 Msa0274250:CDS 50.0%
!! GAGCATCGATGAATCCAGCA+AGG - chr2_3:6044015-6044034 Msa0274250:intron 50.0%
! ACCTGCTCCTTCTGAGGAAA+GGG + chr2_3:6044205-6044224 None:intergenic 50.0%
CGCATGGCATGTGATTGCGT+AGG + chr2_3:6042787-6042806 None:intergenic 55.0%
ACCACGGTAGGAAATCACGG+TGG - chr2_3:6043054-6043073 Msa0274250:intron 55.0%
GTGGCCCAAAAGCTCCACTT+TGG - chr2_3:6043073-6043092 Msa0274250:intron 55.0%
! AATCACGCCCACCGTGCTTT+TGG - chr2_3:6043129-6043148 Msa0274250:intron 55.0%
! ATCACGCCCACCGTGCTTTT+GGG - chr2_3:6043130-6043149 Msa0274250:intron 55.0%
! TACAGCCCCAAAAGCACGGT+GGG + chr2_3:6043139-6043158 None:intergenic 55.0%
! TTACAGCCCCAAAAGCACGG+TGG + chr2_3:6043140-6043159 None:intergenic 55.0%
GGGCTGCAGATTCTATGACC+CGG - chr2_3:6043434-6043453 Msa0274250:CDS 55.0%
!!! CGGCCCGGCCCAATTTTTTA+TGG - chr2_3:6043805-6043824 Msa0274250:CDS 55.0%
! TGAGGCCCGGCCCAAAATTT+TGG - chr2_3:6043877-6043896 Msa0274250:CDS 55.0%
! GAGGCCCGGCCCAAAATTTT+GGG - chr2_3:6043878-6043897 Msa0274250:CDS 55.0%
GCAGGTCCTAAACTCCTTGC+TGG + chr2_3:6044032-6044051 None:intergenic 55.0%
TTAGGGAGCTCATCGCACGT+TGG + chr2_3:6044161-6044180 None:intergenic 55.0%
TCCCTTTCCTCAGAAGGAGC+AGG - chr2_3:6044201-6044220 Msa0274250:CDS 55.0%
! GACCTGCTCCTTCTGAGGAA+AGG + chr2_3:6044206-6044225 None:intergenic 55.0%
GCCACCGTGATTTCCTACCG+TGG + chr2_3:6043058-6043077 None:intergenic 60.0%
! TCACGCCCACCGTGCTTTTG+GGG - chr2_3:6043131-6043150 Msa0274250:intron 60.0%
!! AGGTGTCAAATGGGCTGGCC+CGG - chr2_3:6043351-6043370 Msa0274250:CDS 60.0%
!! TTAAATGGGCTGGGCTGGGC+TGG + chr2_3:6043410-6043429 None:intergenic 60.0%
GCAGATTCTATGACCCGGCC+TGG - chr2_3:6043439-6043458 Msa0274250:CDS 60.0%
!! AATGGGCTGGGCTAATGGGC+CGG + chr2_3:6043912-6043931 None:intergenic 60.0%
!! AATAATGGGCCAGCCCGGCC+CGG - chr2_3:6043790-6043809 Msa0274250:CDS 65.0%
!! TCAAATGGGCTGGCCCGGCC+CGG - chr2_3:6043356-6043375 Msa0274250:CDS 70.0%
TAGTCGGGCCTCTCGAGCCC+GGG + chr2_3:6043377-6043396 None:intergenic 70.0%
GTAGTCGGGCCTCTCGAGCC+CGG + chr2_3:6043378-6043397 None:intergenic 70.0%
AAAATTGGGCCGGGCCGGGC+TGG + chr2_3:6043802-6043821 None:intergenic 70.0%
!! CAAATGGGCTGGCCCGGCCC+GGG - chr2_3:6043357-6043376 Msa0274250:CDS 75.0%
! TGGCCCGGCCCGGGCTCGAG+AGG - chr2_3:6043366-6043385 Msa0274250:CDS 85.0%
! GGGCCTCTCGAGCCCGGGCC+GGG + chr2_3:6043372-6043391 None:intergenic 85.0%
! CGGGCCTCTCGAGCCCGGGC+CGG + chr2_3:6043373-6043392 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6041405 6044229 6041405 ID=Msa0274250;Name=Msa0274250
chr2_3 mRNA 6041405 6044229 6041405 ID=Msa0274250-mRNA-1;Parent=Msa0274250;Name=Msa0274250-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|5|0|276
chr2_3 exon 6044110 6044229 6044110 ID=Msa0274250-mRNA-1:exon:2757;Parent=Msa0274250-mRNA-1
chr2_3 exon 6043745 6043969 6043745 ID=Msa0274250-mRNA-1:exon:2756;Parent=Msa0274250-mRNA-1
chr2_3 exon 6043307 6043504 6043307 ID=Msa0274250-mRNA-1:exon:2755;Parent=Msa0274250-mRNA-1
chr2_3 exon 6042672 6042733 6042672 ID=Msa0274250-mRNA-1:exon:2754;Parent=Msa0274250-mRNA-1
chr2_3 exon 6041405 6041630 6041405 ID=Msa0274250-mRNA-1:exon:2753;Parent=Msa0274250-mRNA-1
chr2_3 CDS 6044110 6044229 6044110 ID=Msa0274250-mRNA-1:cds;Parent=Msa0274250-mRNA-1
chr2_3 CDS 6043745 6043969 6043745 ID=Msa0274250-mRNA-1:cds;Parent=Msa0274250-mRNA-1
chr2_3 CDS 6043307 6043504 6043307 ID=Msa0274250-mRNA-1:cds;Parent=Msa0274250-mRNA-1
chr2_3 CDS 6042672 6042733 6042672 ID=Msa0274250-mRNA-1:cds;Parent=Msa0274250-mRNA-1
chr2_3 CDS 6041405 6041630 6041405 ID=Msa0274250-mRNA-1:cds;Parent=Msa0274250-mRNA-1
Gene Sequence

>Msa0274250

ATGGCTGATAATTCAGAAAGCAATGAAATTCATCATGAGGTAGTTTTAGATGTAAACAGTGATACCTCAGAAAACAATGAAGAGTCAGGCATCAAAGACTCTGTGCCCCTTCTCAAAAAGTTGGTAGCAGAAGTGGTGGGAACATACATGATGATATTTGCAGGGTGTGCTGCTGTTATTGTGAATCTTAACAATGATCATGTAGTAACACTTCCTGGAATTGCATTTGCTTGGGGATTCACTGTTATGGTTTTGATTTATTCTGTTGGTCACATTTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTTTTGCTTCCACTAGAAGATTTCCCTTCAAGCAAGTACCAGCTTATATGATAGCTCAGGTCCTTGGATCCACATTAGCAAGTGGAACCCTCAGACTTATATTTAATGGTGAAGATGATCATTTTATTGGAACACTTCCAGCTGGTTCTAACTTGCAAGCTTTTGTAATCGAGTTCATATGCACTTTCTTCCTTATGTTTGTAATTACTGCAGTAGCCACCGATAATAGAGCGATTGGTGAATTAGCTGGACTTGCGATTGGGTCTACAATAATAATAGATATATTGTTTGCGGGACCAATGACAGGAGCATCGATGAATCCAGCAAGGAGTTTAGGACCTGCTTTTTTATACCATAATTATACAGGATTATGGATATATTTGATTGCACCAATTCTAGGAGCTTTGCTAGGTACATGGACTTACAATTTCATCAGACACACAAACAAGCCAACGTGCGATGAGCTCCCTAAGATTGAGCTCACCAAGATTGTCCCTTTCCTCAGAAGGAGCAGGTCGTAG

Protein sequence

>Msa0274250

MADNSESNEIHHEVVLDVNSDTSENNEESGIKDSVPLLKKLVAEVVGTYMMIFAGCAAVIVNLNNDHVVTLPGIAFAWGFTVMVLIYSVGHISGAHFNPAVTIAFASTRRFPFKQVPAYMIAQVLGSTLASGTLRLIFNGEDDHFIGTLPAGSNLQAFVIEFICTFFLMFVITAVATDNRAIGELAGLAIGSTIIIDILFAGPMTGASMNPARSLGPAFLYHNYTGLWIYLIAPILGALLGTWTYNFIRHTNKPTCDELPKIELTKIVPFLRRSRS*