AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087370 MtrunA17_Chr2g0284631 96.739 276 9 0 1 276 53 328 0.0 549
Msa1087370 MtrunA17_Chr2g0284581 70.221 272 74 2 1 272 1 265 1.03e-141 399
Msa1087370 MtrunA17_Chr2g0284591 66.912 272 81 2 1 272 1 263 3.00e-134 380
Msa1087370 MtrunA17_Chr8g0379911 65.091 275 89 2 1 275 1 268 5.76e-134 379
Msa1087370 MtrunA17_Chr8g0379901 63.504 274 94 1 1 274 1 268 1.04e-129 369
Msa1087370 MtrunA17_Chr2g0284611 64.706 272 89 2 1 272 1 265 2.73e-125 357
Msa1087370 MtrunA17_Chr2g0284601 69.955 223 61 1 50 272 1 217 7.96e-116 332
Msa1087370 MtrunA17_Chr4g0044201 52.083 240 100 2 17 254 13 239 8.87e-90 267
Msa1087370 MtrunA17_Chr5g0435051 50.211 237 115 2 32 268 33 266 9.91e-84 252
Msa1087370 MtrunA17_Chr3g0079421 51.037 241 114 2 32 269 19 258 1.08e-83 251
Msa1087370 MtrunA17_Chr7g0217331 50.467 214 105 1 39 252 37 249 7.93e-76 232
Msa1087370 MtrunA17_Chr4g0001221 55.814 215 94 1 35 249 71 284 4.27e-74 228
Msa1087370 MtrunA17_Chr2g0333771 50.211 237 114 2 37 273 78 310 3.50e-73 226
Msa1087370 MtrunA17_Chr1g0201331 50.000 232 114 2 19 249 53 283 5.22e-68 213
Msa1087370 MtrunA17_Chr5g0426131 46.693 257 118 6 16 258 5 256 1.03e-65 206
Msa1087370 MtrunA17_Chr1g0184541 39.111 225 132 2 39 259 62 285 1.43e-49 165
Msa1087370 MtrunA17_Chr4g0001111 53.378 148 68 1 35 182 71 217 1.27e-40 140
Msa1087370 MtrunA17_Chr4g0001161 51.079 139 67 1 52 190 1 138 3.90e-33 118
Msa1087370 MtrunA17_Chr8g0340161 34.529 223 138 4 38 252 18 240 3.09e-27 105
Msa1087370 MtrunA17_Chr1g0188771 33.468 248 146 6 27 258 12 256 2.73e-26 103
Msa1087370 MtrunA17_Chr1g0146161 34.052 232 137 9 38 258 18 244 7.51e-26 102
Msa1087370 MtrunA17_Chr2g0331261 33.784 222 140 3 34 248 15 236 9.05e-26 102
Msa1087370 MtrunA17_Chr1g0146171 35.111 225 135 7 38 254 18 239 1.03e-25 102
Msa1087370 MtrunA17_Chr4g0001121 58.333 72 30 0 178 249 6 77 7.36e-25 95.5
Msa1087370 MtrunA17_Chr6g0478191 31.452 248 148 7 27 258 12 253 9.56e-24 97.1
Msa1087370 MtrunA17_Chr5g0399341 34.764 233 135 8 38 257 18 246 3.43e-23 95.1
Msa1087370 MtrunA17_Chr7g0264111 30.120 249 146 6 21 248 28 269 5.95e-22 92.8
Msa1087370 MtrunA17_Chr4g0001151 45.522 134 51 3 52 182 1 115 6.24e-22 93.2
Msa1087370 MtrunA17_Chr7g0264961 31.356 236 140 6 38 257 20 249 1.52e-21 90.9
Msa1087370 MtrunA17_Chr3g0145671 29.778 225 143 4 39 248 37 261 3.10e-21 90.5
Msa1087370 MtrunA17_Chr5g0436701 30.275 218 130 6 42 240 58 272 1.49e-20 89.0
Msa1087370 MtrunA17_Chr1g0199731 28.253 269 159 7 4 248 11 269 2.43e-20 88.2
Msa1087370 MtrunA17_Chr2g0326621 29.362 235 142 6 37 248 38 271 5.89e-20 87.0
Msa1087370 MtrunA17_Chr5g0397391 28.571 245 152 7 19 240 25 269 7.74e-20 87.0
Msa1087370 MtrunA17_Chr1g0212671 30.303 231 151 4 38 258 20 250 7.86e-20 86.3
Msa1087370 MtrunA17_Chr4g0006001 29.310 232 141 7 28 240 45 272 5.05e-19 84.7
Msa1087370 MtrunA17_Chr3g0113211 29.358 218 132 6 42 240 58 272 7.34e-19 84.3
Msa1087370 MtrunA17_Chr4g0030861 29.464 224 150 4 44 260 26 248 9.06e-19 83.2
Msa1087370 MtrunA17_Chr8g0386961 27.419 248 151 7 19 240 25 269 2.56e-18 82.8
Msa1087370 MtrunA17_Chr4g0029071 28.390 236 142 7 37 248 37 269 1.25e-16 77.8
Msa1087370 MtrunA17_Chr7g0222791 28.947 228 152 4 28 248 13 237 1.60e-15 74.3
Msa1087370 MtrunA17_Chr4g0020781 30.460 174 118 2 75 246 20 192 1.34e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087370 AT4G18910.1 62.934 259 83 2 25 276 38 290 2.76e-117 338
Msa1087370 AT4G19030.1 58.456 272 100 2 11 275 27 292 2.37e-114 331
Msa1087370 AT1G31885.1 52.708 277 113 3 1 259 1 277 3.18e-101 298
Msa1087370 AT1G31885.2 57.399 223 81 2 51 259 1 223 4.51e-92 273
Msa1087370 AT5G37820.1 51.636 275 121 3 4 272 2 270 5.44e-92 274
Msa1087370 AT5G37820.2 51.636 275 121 3 4 272 38 306 2.34e-91 273
Msa1087370 AT5G37810.1 50.545 275 124 3 4 272 2 270 2.50e-90 270
Msa1087370 AT2G34390.1 53.030 264 107 6 1 248 1 263 1.79e-86 260
Msa1087370 AT4G18910.2 67.568 185 53 1 25 202 38 222 3.98e-86 256
Msa1087370 AT4G19030.3 61.111 198 70 1 11 201 27 224 2.84e-84 252
Msa1087370 AT2G34390.2 56.481 216 86 2 40 248 7 221 2.29e-83 250
Msa1087370 AT4G19030.2 59.777 179 65 1 11 182 27 205 1.29e-73 224
Msa1087370 AT1G80760.1 53.070 228 103 2 34 261 75 298 1.53e-73 228
Msa1087370 AT4G10380.1 50.885 226 110 1 35 260 74 298 2.32e-67 211
Msa1087370 AT2G34390.3 53.211 218 85 6 1 202 1 217 1.23e-66 207
Msa1087370 AT2G34390.4 53.000 200 77 6 1 184 1 199 3.96e-59 188
Msa1087370 AT3G06100.1 41.096 219 125 4 38 254 45 261 2.36e-49 164
Msa1087370 AT3G06100.2 41.395 215 122 4 42 254 1 213 1.57e-48 161
Msa1087370 AT1G31885.3 51.261 119 54 1 1 115 1 119 4.93e-35 123
Msa1087370 AT3G16240.1 35.874 223 130 6 34 246 14 233 6.65e-30 113
Msa1087370 AT2G29870.1 56.977 86 37 0 154 239 20 105 7.49e-29 107
Msa1087370 AT5G47450.1 34.091 220 138 3 34 246 14 233 1.03e-28 110
Msa1087370 AT4G17340.1 32.911 237 149 5 34 260 14 250 3.85e-27 106
Msa1087370 AT3G06100.3 39.716 141 83 2 115 254 41 180 5.67e-27 104
Msa1087370 AT3G26520.1 33.621 232 142 4 38 257 21 252 5.67e-26 103
Msa1087370 AT1G17810.1 37.500 168 101 2 91 254 86 253 1.28e-24 99.8
Msa1087370 AT2G25810.1 34.934 229 138 7 38 258 18 243 1.03e-23 97.1
Msa1087370 AT4G35100.1 30.418 263 158 6 5 248 6 262 4.74e-23 95.9
Msa1087370 AT4G35100.2 30.418 263 158 6 5 248 6 262 4.74e-23 95.9
Msa1087370 AT2G16850.1 31.556 225 139 5 39 248 36 260 2.61e-22 94.0
Msa1087370 AT1G73190.1 35.758 165 104 1 92 254 87 251 3.17e-22 93.6
Msa1087370 AT2G36830.1 32.900 231 144 5 38 257 20 250 3.74e-22 92.8
Msa1087370 AT5G60660.1 29.114 237 141 6 36 248 36 269 7.42e-21 90.1
Msa1087370 AT2G39010.1 29.310 232 141 6 39 248 38 268 4.14e-20 88.2
Msa1087370 AT4G00430.1 29.870 231 141 5 28 240 42 269 4.96e-20 87.8
Msa1087370 AT2G37170.2 28.755 233 145 6 37 248 78 310 1.04e-19 87.4
Msa1087370 AT2G37170.1 28.755 233 145 6 37 248 35 267 1.08e-19 86.7
Msa1087370 AT3G54820.1 27.612 268 159 8 13 248 4 268 2.91e-19 85.5
Msa1087370 AT1G01620.2 31.915 188 108 4 69 240 13 196 1.46e-18 82.4
Msa1087370 AT1G01620.1 29.817 218 130 5 42 240 55 268 1.73e-18 83.6
Msa1087370 AT2G37180.1 27.426 237 143 7 37 248 35 267 1.76e-18 83.6
Msa1087370 AT4G01470.1 29.741 232 151 4 38 257 20 251 1.87e-18 82.8
Msa1087370 AT3G61430.2 29.032 217 133 5 42 240 55 268 1.99e-18 83.2
Msa1087370 AT3G61430.1 29.032 217 133 5 42 240 55 268 1.99e-18 83.2
Msa1087370 AT3G53420.1 27.138 269 156 8 17 248 4 269 2.30e-18 83.2
Msa1087370 AT3G53420.2 27.138 269 156 8 17 248 4 269 2.30e-18 83.2
Msa1087370 AT4G23400.1 29.493 217 132 6 42 240 56 269 6.06e-18 82.0
Msa1087370 AT2G45960.1 27.706 231 146 5 28 240 41 268 3.70e-17 79.7
Msa1087370 AT2G45960.3 26.568 271 161 8 28 274 41 297 2.20e-15 75.1
Msa1087370 AT2G45960.2 27.962 211 134 4 28 223 41 248 2.77e-14 71.6
Msa1087370 AT3G47440.1 25.751 233 162 4 22 246 7 236 6.93e-14 70.1

Find 61 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTGTTGGTCACATTTC+TGG 0.074867 7_3:-64193 Msa1087370:CDS
ACCATAATTATACAGGATTA+TGG 0.226922 7_3:-61934 Msa1087370:CDS
ACCCTCAGACTTATATTTAA+TGG 0.231339 7_3:-63815 Msa1087370:CDS
TCCTGGAATTGCATTTGCTT+GGG 0.267287 7_3:-64239 Msa1087370:CDS
TATTTGATTGCACCAATTCT+AGG 0.280076 7_3:-61908 Msa1087370:CDS
CTCTGTGCCCCTTCTCAAAA+AGG 0.290172 7_3:-64493 Msa1087370:intron
TCCATAATCCTGTATAATTA+TGG 0.291862 7_3:+61933 None:intergenic
ATCTTGGTGAGCTCAATCTT+AGG 0.323061 7_3:+61818 None:intergenic
TGCTTGGGGATTCACTGTTA+TGG 0.330467 7_3:-64224 Msa1087370:CDS
ATGAATCCAGCAAGGAGTTT+AGG 0.360808 7_3:-61971 Msa1087370:CDS
TTCCTGGAATTGCATTTGCT+TGG 0.369726 7_3:-64240 Msa1087370:CDS
GCAGGTCCTAAACTCCTTGC+TGG 0.373011 7_3:+61965 None:intergenic
ATAATAGATATATTGTTTGC+GGG 0.376379 7_3:-63054 Msa1087370:CDS
CCCCAAGCAAATGCAATTCC+AGG 0.380656 7_3:+64238 None:intergenic
GATCATGTAGTAACACTTCC+TGG 0.391987 7_3:-64256 Msa1087370:CDS
TTCATCGATGCTCCTGTCAT+TGG 0.406249 7_3:+61989 None:intergenic
ACATACATGATGATATTTGC+AGG 0.406323 7_3:-64310 Msa1087370:CDS
CCTAGCAAAGCTCCTAGAAT+TGG 0.412209 7_3:+61896 None:intergenic
AAACATTACCGCTCTATTAT+CGG 0.416254 7_3:+63682 None:intergenic
CCTGGAATTGCATTTGCTTG+GGG 0.438227 7_3:-64238 Msa1087370:CDS
TTTCAGATTGGTGAATTAGC+TGG 0.442255 7_3:-63099 Msa1087370:intron
ATTTCAACTCACTTGCTTGA+AGG 0.459719 7_3:+64117 None:intergenic
TTTCAACTCACTTGCTTGAA+GGG 0.467082 7_3:+64118 None:intergenic
CTGCAGTAATTACAAACATA+AGG 0.467928 7_3:+63711 None:intergenic
AATTAGCTGGACTTGCGATT+GGG 0.471618 7_3:-63086 Msa1087370:CDS
GAATTAGCTGGACTTGCGAT+TGG 0.472494 7_3:-63087 Msa1087370:CDS
AATAATAGATATATTGTTTG+CGG 0.478293 7_3:-63055 Msa1087370:CDS
ACCTGCTCCTTCTGAGGAAA+GGG 0.479226 7_3:+61792 None:intergenic
GAGGGTTCCACTTGCTAATG+TGG 0.479931 7_3:+63832 None:intergenic
TATATGATAGCTCAGGTCCT+TGG 0.491184 7_3:-63857 Msa1087370:CDS
TCAGAAAACAATGAAGAGTC+AGG 0.495664 7_3:-64525 Msa1087370:CDS
GCAAAAGCAATGGTAACAGC+AGG 0.496624 7_3:+64157 None:intergenic
TCTGAGGAAAGGGACAATCT+TGG 0.500492 7_3:+61802 None:intergenic
TAGGAGCTTTGCTAGGTACA+TGG 0.502318 7_3:-61889 Msa1087370:CDS
ACCTGAGCTATCATATAAGC+TGG 0.513440 7_3:+63863 None:intergenic
TCCCTTTCCTCAGAAGGAGC+AGG 0.522202 7_3:-61793 Msa1087370:CDS
TTTATTGGAACACTTCCAGC+TGG 0.523797 7_3:-63779 Msa1087370:CDS
TCTTGGTGAGCTCAATCTTA+GGG 0.525478 7_3:+61819 None:intergenic
AGATTGTCCCTTTCCTCAGA+AGG 0.528762 7_3:-61799 Msa1087370:CDS
ACCATTAAATATAAGTCTGA+GGG 0.536139 7_3:+63814 None:intergenic
CACCATTAAATATAAGTCTG+AGG 0.544607 7_3:+63813 None:intergenic
GCTTGCAAGTTAGAACCAGC+TGG 0.544915 7_3:+63764 None:intergenic
AATATAGTTGGTAGCAGAAG+TGG 0.548823 7_3:-64338 Msa1087370:intron
ACCAGCTTATATGATAGCTC+AGG 0.564135 7_3:-63864 Msa1087370:CDS
CCAATTCTAGGAGCTTTGCT+AGG 0.564730 7_3:-61896 Msa1087370:CDS
ATAGTTGGTAGCAGAAGTGG+TGG 0.567543 7_3:-64335 Msa1087370:intron
CACTTGCTAATGTGGATCCA+AGG 0.576613 7_3:+63840 None:intergenic
TAATAGATATATTGTTTGCG+GGG 0.592041 7_3:-63053 Msa1087370:intron
CTTGAAGGGAAATCTTCTAG+TGG 0.592191 7_3:+64132 None:intergenic
GCTACGACCTGCTCCTTCTG+AGG 0.600095 7_3:+61786 None:intergenic
AAGCAATGAAATTCATCATG+AGG 0.601214 7_3:-64574 Msa1087370:CDS
GACCTGCTCCTTCTGAGGAA+AGG 0.601572 7_3:+61791 None:intergenic
TCTAGTGGAAGCAAAAGCAA+TGG 0.634655 7_3:+64147 None:intergenic
CATACATGATGATATTTGCA+GGG 0.634898 7_3:-64309 Msa1087370:CDS
CTTGGATCCACATTAGCAAG+TGG 0.643702 7_3:-63839 Msa1087370:CDS
CATTACCGCTCTATTATCGG+TGG 0.651247 7_3:+63685 None:intergenic
CAAAAGCAATGGTAACAGCA+GGG 0.665784 7_3:+64158 None:intergenic
TTAGGGAGCTCATCGCACGT+TGG 0.679497 7_3:+61836 None:intergenic
GAGCATCGATGAATCCAGCA+AGG 0.685272 7_3:-61979 Msa1087370:CDS
TAGTTGGTAGCAGAAGTGGT+GGG 0.737512 7_3:-64334 Msa1087370:CDS
AGTAGCCACCGATAATAGAG+CGG 0.741536 7_3:-63690 Msa1087370:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATTACAAAAAAAAAT+TGG - chr7_3:62002-62021 Msa1087370:intron 10.0%
!! ATTATATTTGTTTAACAAAT+TGG - chr7_3:62781-62800 Msa1087370:intron 10.0%
!! TTATATTTGTTTAACAAATT+GGG - chr7_3:62782-62801 Msa1087370:intron 10.0%
!!! ACTTCTAATATTATTTTTTT+GGG + chr7_3:63133-63152 None:intergenic 10.0%
!!! AACTTCTAATATTATTTTTT+TGG + chr7_3:63134-63153 None:intergenic 10.0%
!!! AATAATTTTAAATTGTTTCA+TGG - chr7_3:63211-63230 Msa1087370:intron 10.0%
!! ACTAAAAAATATATTCAATT+AGG + chr7_3:63369-63388 None:intergenic 10.0%
!! TTTAAAAGTAAAAAATAAAC+GGG + chr7_3:63849-63868 None:intergenic 10.0%
!!! TTGGTTATCTAAAATAAAAT+TGG - chr7_3:62304-62323 Msa1087370:intron 15.0%
!!! TTATCTAAAATAAAATTGGA+AGG - chr7_3:62308-62327 Msa1087370:intron 15.0%
!!! CTATTAATAATACTCTTTTA+GGG + chr7_3:62392-62411 None:intergenic 15.0%
!!! TCTATTAATAATACTCTTTT+AGG + chr7_3:62393-62412 None:intergenic 15.0%
!! TATATTTGTTTAACAAATTG+GGG - chr7_3:62783-62802 Msa1087370:intron 15.0%
!! ATATAAGTTTAATCATAAGT+TGG + chr7_3:62853-62872 None:intergenic 15.0%
!! AACTTATATAATGATATCTT+TGG - chr7_3:62864-62883 Msa1087370:intron 15.0%
!! ACTTATATAATGATATCTTT+GGG - chr7_3:62865-62884 Msa1087370:intron 15.0%
!!! TTTTTTTTTCTTTTTCAGAT+TGG - chr7_3:63267-63286 Msa1087370:intron 15.0%
!! AATAATAGATATATTGTTTG+CGG - chr7_3:63323-63342 Msa1087370:intron 15.0%
!! ATCAAATTAAATAGCAATAA+TGG - chr7_3:64159-64178 Msa1087370:CDS 15.0%
!! TCAAATTAAATAGCAATAAT+GGG - chr7_3:64160-64179 Msa1087370:CDS 15.0%
!!! TTTTTATACCATAATTATAC+AGG - chr7_3:64437-64456 Msa1087370:intron 15.0%
!! AAAAGAGACTAAAAACTTAA+GGG + chr7_3:61940-61959 None:intergenic 20.0%
!! AAAAAGAGACTAAAAACTTA+AGG + chr7_3:61941-61960 None:intergenic 20.0%
!!! TTAAGTTTTTAGTCTCTTTT+TGG - chr7_3:61940-61959 Msa1087370:CDS 20.0%
!!! CAAAAAAAAATTGGTTTTGT+TGG - chr7_3:62011-62030 Msa1087370:intron 20.0%
!! TAATAATTAAAACATGCATG+TGG - chr7_3:62336-62355 Msa1087370:intron 20.0%
!!! ATTCATTTTAACTTTGTTGA+AGG - chr7_3:62490-62509 Msa1087370:intron 20.0%
!! TCTACTCTTACTAAATAAAT+TGG - chr7_3:62719-62738 Msa1087370:intron 20.0%
!! TATATAAAATGTTGTCATGT+TGG - chr7_3:63019-63038 Msa1087370:intron 20.0%
!! ATAATAGATATATTGTTTGC+GGG - chr7_3:63324-63343 Msa1087370:intron 20.0%
!!! TTTTTGCTTATATTTGTGAT+CGG + chr7_3:63576-63595 None:intergenic 20.0%
!!! AATATATAACTCTTTTGTAG+AGG - chr7_3:63715-63734 Msa1087370:CDS 20.0%
!!! ATGTTTTAGCAAAAAAATAG+TGG + chr7_3:63916-63935 None:intergenic 20.0%
!! TAATTATGGTATAAAAAAGC+AGG + chr7_3:64434-64453 None:intergenic 20.0%
!!! AAAAGTTACCTTTTTGAGAA+GGG + chr7_3:61896-61915 None:intergenic 25.0%
! TGTTGGATATTGAATATAGT+TGG - chr7_3:62028-62047 Msa1087370:intron 25.0%
!!! ATGGTTTTGATTTATTCTGT+TGG - chr7_3:62173-62192 Msa1087370:intron 25.0%
!!! TCTTTTAGGGTAATTACTAA+TGG + chr7_3:62379-62398 None:intergenic 25.0%
! ACCATTAAATATAAGTCTGA+GGG + chr7_3:62567-62586 None:intergenic 25.0%
!! ATCTTTGGGAATAAACTAAT+TGG - chr7_3:62879-62898 Msa1087370:intron 25.0%
! GAATTTCTTCAAAATAGTAG+TGG - chr7_3:62904-62923 Msa1087370:intron 25.0%
! TAATAGATATATTGTTTGCG+GGG - chr7_3:63325-63344 Msa1087370:intron 25.0%
! CATTCAATATATGATGTATG+TGG - chr7_3:63611-63630 Msa1087370:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr7_3:63650-63669 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr7_3:63685-63704 Msa1087370:intron 25.0%
! TTTGCTAAAACATGATTAGA+TGG - chr7_3:63923-63942 Msa1087370:intron 25.0%
! CATTTAGCCCATAAAAAATT+GGG + chr7_3:64200-64219 None:intergenic 25.0%
!!! CAATTTTTTATGGGCTAAAT+GGG - chr7_3:64199-64218 Msa1087370:CDS 25.0%
!! AAAAAAACGAGTGTGTTTTT+GGG - chr7_3:64230-64249 Msa1087370:CDS 25.0%
! ACCATAATTATACAGGATTA+TGG - chr7_3:64444-64463 Msa1087370:intron 25.0%
! TCCATAATCCTGTATAATTA+TGG + chr7_3:64448-64467 None:intergenic 25.0%
AAGCAATGAAATTCATCATG+AGG - chr7_3:61804-61823 Msa1087370:CDS 30.0%
!! AAAGTTACCTTTTTGAGAAG+GGG + chr7_3:61895-61914 None:intergenic 30.0%
!! GAAAAGTTACCTTTTTGAGA+AGG + chr7_3:61897-61916 None:intergenic 30.0%
ACATACATGATGATATTTGC+AGG - chr7_3:62068-62087 Msa1087370:intron 30.0%
CATACATGATGATATTTGCA+GGG - chr7_3:62069-62088 Msa1087370:intron 30.0%
CATCTTATGCAATATGCATT+TGG - chr7_3:62285-62304 Msa1087370:intron 30.0%
ACCCTCAGACTTATATTTAA+TGG - chr7_3:62563-62582 Msa1087370:intron 30.0%
CACCATTAAATATAAGTCTG+AGG + chr7_3:62568-62587 None:intergenic 30.0%
! GGTGAAGATGATCATTTTAT+TGG - chr7_3:62584-62603 Msa1087370:intron 30.0%
CTGCAGTAATTACAAACATA+AGG + chr7_3:62670-62689 None:intergenic 30.0%
AAACATTACCGCTCTATTAT+CGG + chr7_3:62699-62718 None:intergenic 30.0%
! TTATTTGTTCCAACGACTTT+TGG - chr7_3:63082-63101 Msa1087370:CDS 30.0%
AATTTCATTCCAAAAGTCGT+TGG + chr7_3:63094-63113 None:intergenic 30.0%
!!! CTTCACTTTTTTCAAAACCA+CGG - chr7_3:63422-63441 Msa1087370:intron 30.0%
! TTTGGAGCTTCATAAAATCA+CGG - chr7_3:63475-63494 Msa1087370:intron 30.0%
CCATTTAGCCCATAAAAAAT+TGG + chr7_3:64201-64220 None:intergenic 30.0%
!!! CCAATTTTTTATGGGCTAAA+TGG - chr7_3:64198-64217 Msa1087370:CDS 30.0%
!!! CAAAAACACACTCGTTTTTT+TGG + chr7_3:64231-64250 None:intergenic 30.0%
! CAAAAAAACGAGTGTGTTTT+TGG - chr7_3:64229-64248 Msa1087370:CDS 30.0%
! ATATTTTACAGACCAATGAC+AGG - chr7_3:64377-64396 Msa1087370:intron 30.0%
TATTTGATTGCACCAATTCT+AGG - chr7_3:64470-64489 Msa1087370:intron 30.0%
! TGACTCTTCATTGTTTTCTG+AGG + chr7_3:61854-61873 None:intergenic 35.0%
TCAGAAAACAATGAAGAGTC+AGG - chr7_3:61853-61872 Msa1087370:CDS 35.0%
! CTTTTCTTTCCTTCTCTAGA+AGG - chr7_3:61911-61930 Msa1087370:CDS 35.0%
!! AATATAGTTGGTAGCAGAAG+TGG - chr7_3:62040-62059 Msa1087370:intron 35.0%
TATTCTGTTGGTCACATTTC+TGG - chr7_3:62185-62204 Msa1087370:intron 35.0%
TTTCAACTCACTTGCTTGAA+GGG + chr7_3:62263-62282 None:intergenic 35.0%
ATTTCAACTCACTTGCTTGA+AGG + chr7_3:62264-62283 None:intergenic 35.0%
TTGAAACTGAAACCATGAGT+TGG + chr7_3:62439-62458 None:intergenic 35.0%
!!! ATTATATGTTTTGACGCGCA+TGG + chr7_3:63185-63204 None:intergenic 35.0%
TTTCAGATTGGTGAATTAGC+TGG - chr7_3:63279-63298 Msa1087370:intron 35.0%
!!! ACTTTTTTCAAAACCACGGT+AGG - chr7_3:63426-63445 Msa1087370:intron 35.0%
! GATTTTATGAAGCTCCAAAG+TGG + chr7_3:63474-63493 None:intergenic 35.0%
TGCTTATATTTGTGATCGGA+GGG + chr7_3:63572-63591 None:intergenic 35.0%
TTGCTTATATTTGTGATCGG+AGG + chr7_3:63573-63592 None:intergenic 35.0%
GAGTTATATATTACACCCTC+CGG + chr7_3:63707-63726 None:intergenic 35.0%
!!! TCTTTTGTAGAGGTGTCAAA+TGG - chr7_3:63725-63744 Msa1087370:CDS 35.0%
!!! CTTTTGTAGAGGTGTCAAAT+GGG - chr7_3:63726-63745 Msa1087370:CDS 35.0%
! TCTGCAGCCCAATTTTAAAT+GGG + chr7_3:63808-63827 None:intergenic 35.0%
! ATCTGCAGCCCAATTTTAAA+TGG + chr7_3:63809-63828 None:intergenic 35.0%
AAGTAAAAAATAAACGGGCC+AGG + chr7_3:63844-63863 None:intergenic 35.0%
!!! TGTTTTTGGGCTAGTTTTTG+AGG - chr7_3:64243-64262 Msa1087370:CDS 35.0%
AGAGTAGAGCTGTCAAAAAT+GGG + chr7_3:64313-64332 None:intergenic 35.0%
AAGAGTAGAGCTGTCAAAAA+TGG + chr7_3:64314-64333 None:intergenic 35.0%
! TTTTGACAGCTCTACTCTTT+TGG - chr7_3:64315-64334 Msa1087370:CDS 35.0%
GATCATGTAGTAACACTTCC+TGG - chr7_3:62122-62141 Msa1087370:intron 40.0%
TTCCTGGAATTGCATTTGCT+TGG - chr7_3:62138-62157 Msa1087370:intron 40.0%
TCCTGGAATTGCATTTGCTT+GGG - chr7_3:62139-62158 Msa1087370:intron 40.0%
CAAAAGCAATGGTAACAGCA+GGG + chr7_3:62223-62242 None:intergenic 40.0%
TCTAGTGGAAGCAAAAGCAA+TGG + chr7_3:62234-62253 None:intergenic 40.0%
CTTGAAGGGAAATCTTCTAG+TGG + chr7_3:62249-62268 None:intergenic 40.0%
CATGCATGTGGATGATAAGT+TGG - chr7_3:62348-62367 Msa1087370:intron 40.0%
CATTCTTCTGAACCAACTCA+TGG - chr7_3:62424-62443 Msa1087370:intron 40.0%
ACCAGCTTATATGATAGCTC+AGG - chr7_3:62514-62533 Msa1087370:intron 40.0%
ACCTGAGCTATCATATAAGC+TGG + chr7_3:62518-62537 None:intergenic 40.0%
TATATGATAGCTCAGGTCCT+TGG - chr7_3:62521-62540 Msa1087370:intron 40.0%
TTTATTGGAACACTTCCAGC+TGG - chr7_3:62599-62618 Msa1087370:intron 40.0%
TACATAGATGACACTCTGCA+GGG + chr7_3:63057-63076 None:intergenic 40.0%
AATTAGCTGGACTTGCGATT+GGG - chr7_3:63292-63311 Msa1087370:intron 40.0%
TTGTACACTTAGCGTGTGTT+TGG - chr7_3:63394-63413 Msa1087370:intron 40.0%
AAAACCACGGTAGGAAATCA+CGG - chr7_3:63435-63454 Msa1087370:intron 40.0%
GAGCTTCATAAAATCACGGT+AGG - chr7_3:63479-63498 Msa1087370:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr7_3:63688-63707 Msa1087370:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr7_3:63689-63708 Msa1087370:intron 40.0%
!!! AATTTTAAATGGGCTGGGCT+GGG + chr7_3:63798-63817 None:intergenic 40.0%
! AGCCCAGCCCATTTAAAATT+GGG - chr7_3:63798-63817 Msa1087370:CDS 40.0%
!! AGCCCAATTTTAAATGGGCT+GGG + chr7_3:63803-63822 None:intergenic 40.0%
TAGCCCATAAAAAATTGGGC+CGG + chr7_3:64196-64215 None:intergenic 40.0%
!! TTTTATGGGCTAAATGGGCT+TGG - chr7_3:64204-64223 Msa1087370:CDS 40.0%
! TTTATGGGCTAAATGGGCTT+GGG - chr7_3:64205-64224 Msa1087370:CDS 40.0%
! ATTAGCCCAAAATTTTGGGC+CGG + chr7_3:64270-64289 None:intergenic 40.0%
! GCCCAAAATTTTGGGCTAAT+GGG - chr7_3:64270-64289 Msa1087370:CDS 40.0%
! GCCCATTAGCCCAAAATTTT+GGG + chr7_3:64274-64293 None:intergenic 40.0%
!! AAAATTTTGGGCTAATGGGC+CGG - chr7_3:64274-64293 Msa1087370:CDS 40.0%
ATGAATCCAGCAAGGAGTTT+AGG - chr7_3:64407-64426 Msa1087370:intron 40.0%
TCTTGGTGAGCTCAATCTTA+GGG + chr7_3:64562-64581 None:intergenic 40.0%
ATCTTGGTGAGCTCAATCTT+AGG + chr7_3:64563-64582 None:intergenic 40.0%
! TAAGGGATGCCTTCTAGAGA+AGG + chr7_3:61923-61942 None:intergenic 45.0%
!! ATAGTTGGTAGCAGAAGTGG+TGG - chr7_3:62043-62062 Msa1087370:intron 45.0%
!! TAGTTGGTAGCAGAAGTGGT+GGG - chr7_3:62044-62063 Msa1087370:intron 45.0%
CCTGGAATTGCATTTGCTTG+GGG - chr7_3:62140-62159 Msa1087370:intron 45.0%
TGCTTGGGGATTCACTGTTA+TGG - chr7_3:62154-62173 Msa1087370:intron 45.0%
GCAAAAGCAATGGTAACAGC+AGG + chr7_3:62224-62243 None:intergenic 45.0%
! CACTTGCTAATGTGGATCCA+AGG + chr7_3:62541-62560 None:intergenic 45.0%
CTTGGATCCACATTAGCAAG+TGG - chr7_3:62539-62558 Msa1087370:intron 45.0%
AGTAGCCACCGATAATAGAG+CGG - chr7_3:62688-62707 Msa1087370:intron 45.0%
CATTACCGCTCTATTATCGG+TGG + chr7_3:62696-62715 None:intergenic 45.0%
CTACATAGATGACACTCTGC+AGG + chr7_3:63058-63077 None:intergenic 45.0%
GAATTAGCTGGACTTGCGAT+TGG - chr7_3:63291-63310 Msa1087370:intron 45.0%
ACACTTAGCGTGTGTTTGGA+AGG - chr7_3:63398-63417 Msa1087370:intron 45.0%
CACTTAGCGTGTGTTTGGAA+GGG - chr7_3:63399-63418 Msa1087370:intron 45.0%
! AGCTCCAAAGTGGAGCTTTT+GGG + chr7_3:63464-63483 None:intergenic 45.0%
! AAGCTCCAAAGTGGAGCTTT+TGG + chr7_3:63465-63484 None:intergenic 45.0%
AGTTTACAGCCCCAAAAGCA+CGG + chr7_3:63527-63546 None:intergenic 45.0%
!!! TGCTTTTGGGGCTGTAAACT+CGG - chr7_3:63527-63546 Msa1087370:intron 45.0%
AGAGGCCCGACTACATAAAT+GGG - chr7_3:63768-63787 Msa1087370:CDS 45.0%
!!! CAATTTTAAATGGGCTGGGC+TGG + chr7_3:63799-63818 None:intergenic 45.0%
! CAGCCCAGCCCATTTAAAAT+TGG - chr7_3:63797-63816 Msa1087370:CDS 45.0%
! CAGCCCAATTTTAAATGGGC+TGG + chr7_3:63804-63823 None:intergenic 45.0%
AAAAAATAAACGGGCCAGGC+CGG + chr7_3:63840-63859 None:intergenic 45.0%
AGCCCATAAAAAATTGGGCC+GGG + chr7_3:64195-64214 None:intergenic 45.0%
! TTAGCCCAAAATTTTGGGCC+GGG + chr7_3:64269-64288 None:intergenic 45.0%
! GGCCCAAAATTTTGGGCTAA+TGG - chr7_3:64269-64288 Msa1087370:CDS 45.0%
! GGCCCATTAGCCCAAAATTT+TGG + chr7_3:64275-64294 None:intergenic 45.0%
!! CAAAAATGGGCTGGGCTAAT+GGG + chr7_3:64300-64319 None:intergenic 45.0%
!! TCAAAAATGGGCTGGGCTAA+TGG + chr7_3:64301-64320 None:intergenic 45.0%
! AGAGCTGTCAAAAATGGGCT+GGG + chr7_3:64308-64327 None:intergenic 45.0%
TAGAGCTGTCAAAAATGGGC+TGG + chr7_3:64309-64328 None:intergenic 45.0%
TTCATCGATGCTCCTGTCAT+TGG + chr7_3:64392-64411 None:intergenic 45.0%
CCTAGCAAAGCTCCTAGAAT+TGG + chr7_3:64485-64504 None:intergenic 45.0%
! CCAATTCTAGGAGCTTTGCT+AGG - chr7_3:64482-64501 Msa1087370:intron 45.0%
TAGGAGCTTTGCTAGGTACA+TGG - chr7_3:64489-64508 Msa1087370:intron 45.0%
TCTGAGGAAAGGGACAATCT+TGG + chr7_3:64579-64598 None:intergenic 45.0%
AGATTGTCCCTTTCCTCAGA+AGG - chr7_3:64579-64598 Msa1087370:CDS 45.0%
!!! TTTGATTAAATATTTTTTAT+TGG - chr7_3:62814-62833 Msa1087370:intron 5.0%
!!! TTTTAAAAGTAAAAAATAAA+CGG + chr7_3:63850-63869 None:intergenic 5.0%
CTCTGTGCCCCTTCTCAAAA+AGG - chr7_3:61885-61904 Msa1087370:CDS 50.0%
CCCCAAGCAAATGCAATTCC+AGG + chr7_3:62143-62162 None:intergenic 50.0%
! GAGGGTTCCACTTGCTAATG+TGG + chr7_3:62549-62568 None:intergenic 50.0%
GCTTGCAAGTTAGAACCAGC+TGG + chr7_3:62617-62636 None:intergenic 50.0%
! GGAGGGTGTATGTGTGTGTT+TGG + chr7_3:63555-63574 None:intergenic 50.0%
!! TGTAGAGGTGTCAAATGGGC+TGG - chr7_3:63730-63749 Msa1087370:CDS 50.0%
GAGAGGCCCGACTACATAAA+TGG - chr7_3:63767-63786 Msa1087370:CDS 50.0%
GCTGGCCCATTTATGTAGTC+GGG + chr7_3:63776-63795 None:intergenic 50.0%
! GGCTGGCCCATTTATGTAGT+CGG + chr7_3:63777-63796 None:intergenic 50.0%
AAAAATAAACGGGCCAGGCC+GGG + chr7_3:63839-63858 None:intergenic 50.0%
!! ATAGCAATAATGGGCCAGCC+CGG - chr7_3:64169-64188 Msa1087370:CDS 50.0%
ATAAAAAATTGGGCCGGGCC+GGG + chr7_3:64190-64209 None:intergenic 50.0%
CATAAAAAATTGGGCCGGGC+CGG + chr7_3:64191-64210 None:intergenic 50.0%
!!! GGCCCGGCCCAATTTTTTAT+GGG - chr7_3:64190-64209 Msa1087370:CDS 50.0%
!!! TTGGGCTAGTTTTTGAGGCC+CGG - chr7_3:64248-64267 Msa1087370:CDS 50.0%
!! GAGCATCGATGAATCCAGCA+AGG - chr7_3:64399-64418 Msa1087370:intron 50.0%
! ACCTGCTCCTTCTGAGGAAA+GGG + chr7_3:64589-64608 None:intergenic 50.0%
CGCATGGCATGTGATTGCGT+AGG + chr7_3:63169-63188 None:intergenic 55.0%
ACCACGGTAGGAAATCACGG+TGG - chr7_3:63438-63457 Msa1087370:intron 55.0%
GTGGCCCAAAAGCTCCACTT+TGG - chr7_3:63457-63476 Msa1087370:intron 55.0%
! AATCACGCCCACCGTGCTTT+TGG - chr7_3:63513-63532 Msa1087370:intron 55.0%
! ATCACGCCCACCGTGCTTTT+GGG - chr7_3:63514-63533 Msa1087370:intron 55.0%
! TACAGCCCCAAAAGCACGGT+GGG + chr7_3:63523-63542 None:intergenic 55.0%
! TTACAGCCCCAAAAGCACGG+TGG + chr7_3:63524-63543 None:intergenic 55.0%
GGGCTGCAGATTCTATGACC+CGG - chr7_3:63818-63837 Msa1087370:CDS 55.0%
!!! CGGCCCGGCCCAATTTTTTA+TGG - chr7_3:64189-64208 Msa1087370:CDS 55.0%
! TGAGGCCCGGCCCAAAATTT+TGG - chr7_3:64261-64280 Msa1087370:CDS 55.0%
! GAGGCCCGGCCCAAAATTTT+GGG - chr7_3:64262-64281 Msa1087370:CDS 55.0%
GCAGGTCCTAAACTCCTTGC+TGG + chr7_3:64416-64435 None:intergenic 55.0%
TTAGGGAGCTCATCGCACGT+TGG + chr7_3:64545-64564 None:intergenic 55.0%
TCCCTTTCCTCAGAAGGAGC+AGG - chr7_3:64585-64604 Msa1087370:CDS 55.0%
! GACCTGCTCCTTCTGAGGAA+AGG + chr7_3:64590-64609 None:intergenic 55.0%
GCCACCGTGATTTCCTACCG+TGG + chr7_3:63442-63461 None:intergenic 60.0%
! TCACGCCCACCGTGCTTTTG+GGG - chr7_3:63515-63534 Msa1087370:intron 60.0%
!! AGGTGTCAAATGGGCTGGCC+CGG - chr7_3:63735-63754 Msa1087370:CDS 60.0%
!! TTAAATGGGCTGGGCTGGGC+TGG + chr7_3:63794-63813 None:intergenic 60.0%
GCAGATTCTATGACCCGGCC+TGG - chr7_3:63823-63842 Msa1087370:CDS 60.0%
!! AATGGGCTGGGCTAATGGGC+CGG + chr7_3:64296-64315 None:intergenic 60.0%
!! AATAATGGGCCAGCCCGGCC+CGG - chr7_3:64174-64193 Msa1087370:CDS 65.0%
!! TCAAATGGGCTGGCCCGGCC+CGG - chr7_3:63740-63759 Msa1087370:CDS 70.0%
TAGTCGGGCCTCTCGAGCCC+GGG + chr7_3:63761-63780 None:intergenic 70.0%
GTAGTCGGGCCTCTCGAGCC+CGG + chr7_3:63762-63781 None:intergenic 70.0%
AAAATTGGGCCGGGCCGGGC+TGG + chr7_3:64186-64205 None:intergenic 70.0%
!! CAAATGGGCTGGCCCGGCCC+GGG - chr7_3:63741-63760 Msa1087370:CDS 75.0%
! TGGCCCGGCCCGGGCTCGAG+AGG - chr7_3:63750-63769 Msa1087370:CDS 85.0%
! GGGCCTCTCGAGCCCGGGCC+GGG + chr7_3:63756-63775 None:intergenic 85.0%
! CGGGCCTCTCGAGCCCGGGC+CGG + chr7_3:63757-63776 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 61787 64613 61787 ID=Msa1087370;Name=Msa1087370
chr7_3 mRNA 61787 64613 61787 ID=Msa1087370-mRNA-1;Parent=Msa1087370;Name=Msa1087370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|5|0|276
chr7_3 exon 64494 64613 64494 ID=Msa1087370-mRNA-1:exon:26;Parent=Msa1087370-mRNA-1
chr7_3 exon 64129 64353 64129 ID=Msa1087370-mRNA-1:exon:25;Parent=Msa1087370-mRNA-1
chr7_3 exon 63691 63888 63691 ID=Msa1087370-mRNA-1:exon:24;Parent=Msa1087370-mRNA-1
chr7_3 exon 63054 63115 63054 ID=Msa1087370-mRNA-1:exon:23;Parent=Msa1087370-mRNA-1
chr7_3 exon 61787 62012 61787 ID=Msa1087370-mRNA-1:exon:22;Parent=Msa1087370-mRNA-1
chr7_3 CDS 64494 64613 64494 ID=Msa1087370-mRNA-1:cds;Parent=Msa1087370-mRNA-1
chr7_3 CDS 64129 64353 64129 ID=Msa1087370-mRNA-1:cds;Parent=Msa1087370-mRNA-1
chr7_3 CDS 63691 63888 63691 ID=Msa1087370-mRNA-1:cds;Parent=Msa1087370-mRNA-1
chr7_3 CDS 63054 63115 63054 ID=Msa1087370-mRNA-1:cds;Parent=Msa1087370-mRNA-1
chr7_3 CDS 61787 62012 61787 ID=Msa1087370-mRNA-1:cds;Parent=Msa1087370-mRNA-1
Gene Sequence

>Msa1087370

ATGGCTGATAATTCAGAAAGCAATGAAATTCATCATGAGGTAGTTTTAGATGTAAACAGTGATACCTCAGAAAACAATGAAGAGTCAGGCATCAAAGACTCTGTGCCCCTTCTCAAAAAGTTGGTAGCAGAAGTGGTGGGAACATACATGATGATATTTGCAGGGTGTGCTGCTGTTATTGTGAATCTTAACAATGATCATGTAGTAACACTTCCTGGAATTGCATTTGCTTGGGGATTCACTGTTATGGTTTTGATTTATTCTGTTGGTCACATTTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTTTTGCTTCCACTAGAAGATTTCCCTTCAAGCAAGTACCAGCTTATATGATAGCTCAGGTCCTTGGATCCACATTAGCAAGTGGAACCCTCAGACTTATATTTAATGGTGAAGATGATCATTTTATTGGAACACTTCCAGCTGGTTCTAACTTGCAAGCTTTTGTAATCGAGTTCATATGCACTTTCTTCCTTATGTTTGTAATTACTGCAGTAGCCACCGATAATAGAGCGATTGGTGAATTAGCTGGACTTGCGATTGGGTCTACAATAATAATAGATATATTGTTTGCGGGACCAATGACAGGAGCATCGATGAATCCAGCAAGGAGTTTAGGACCTGCTTTTTTATACCATAATTATACAGGATTATGGATATATTTGATTGCACCAATTCTAGGAGCTTTGCTAGGTACATGGACTTACAATTTCATCAGACACACAAACAAGCCAACGTGCGATGAGCTCCCTAAGATTGAGCTCACCAAGATTGTCCCTTTCCTCAGAAGGAGCAGGTCGTAG

Protein sequence

>Msa1087370

MADNSESNEIHHEVVLDVNSDTSENNEESGIKDSVPLLKKLVAEVVGTYMMIFAGCAAVIVNLNNDHVVTLPGIAFAWGFTVMVLIYSVGHISGAHFNPAVTIAFASTRRFPFKQVPAYMIAQVLGSTLASGTLRLIFNGEDDHFIGTLPAGSNLQAFVIEFICTFFLMFVITAVATDNRAIGELAGLAIGSTIIIDILFAGPMTGASMNPARSLGPAFLYHNYTGLWIYLIAPILGALLGTWTYNFIRHTNKPTCDELPKIELTKIVPFLRRSRS*