Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260290 | XP_003597843.1 | 98.391 | 373 | 6 | 0 | 1 | 373 | 1 | 373 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260290 | G7IMH9 | 98.391 | 373 | 6 | 0 | 1 | 373 | 1 | 373 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031120 | Msa0260290 | 0.814920 | 1.204626e-51 | -8.615850e-47 |
| Msa0094960 | Msa0260290 | 0.963476 | 3.936340e-122 | -8.615850e-47 |
| Msa0226640 | Msa0260290 | 0.860603 | 1.840885e-63 | -8.615850e-47 |
| Msa0260250 | Msa0260290 | 0.999394 | 3.325931e-308 | -8.615850e-47 |
| Msa0260290 | Msa0304250 | 0.963217 | 8.136985e-122 | -8.615850e-47 |
| Msa0260290 | Msa0550400 | 0.820790 | 5.693581e-53 | -8.615850e-47 |
| Msa0260290 | Msa0646590 | 0.818439 | 1.958978e-52 | -8.615850e-47 |
| Msa0260290 | Msa0686530 | 0.818207 | 2.211472e-52 | -8.615850e-47 |
| Msa0260290 | Msa1448390 | 0.802200 | 6.279568e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260290 | MtrunA17_Chr2g0332541 | 98.391 | 373 | 6 | 0 | 1 | 373 | 1 | 373 | 0.0 | 761 |
| Msa0260290 | MtrunA17_Chr1g0149051 | 68.661 | 351 | 104 | 2 | 20 | 369 | 31 | 376 | 0.0 | 508 |
| Msa0260290 | MtrunA17_Chr3g0089391 | 50.595 | 336 | 160 | 2 | 26 | 361 | 32 | 361 | 5.94e-119 | 349 |
| Msa0260290 | MtrunA17_Chr4g0019601 | 50.599 | 334 | 159 | 2 | 28 | 361 | 37 | 364 | 2.83e-115 | 340 |
| Msa0260290 | MtrunA17_Chr4g0019581 | 50.000 | 334 | 161 | 2 | 28 | 361 | 106 | 433 | 3.05e-114 | 339 |
| Msa0260290 | MtrunA17_Chr2g0286051 | 45.706 | 361 | 188 | 2 | 3 | 363 | 13 | 365 | 5.45e-113 | 335 |
| Msa0260290 | MtrunA17_Chr4g0019571 | 45.810 | 358 | 188 | 2 | 4 | 361 | 13 | 364 | 2.26e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260290 | AT5G11420.1 | 65.014 | 363 | 122 | 1 | 7 | 369 | 9 | 366 | 0.0 | 510 |
| Msa0260290 | AT5G25460.1 | 65.301 | 366 | 122 | 1 | 4 | 369 | 9 | 369 | 1.34e-180 | 506 |
| Msa0260290 | AT4G32460.2 | 64.865 | 370 | 124 | 2 | 1 | 369 | 1 | 365 | 2.48e-178 | 500 |
| Msa0260290 | AT4G32460.1 | 64.865 | 370 | 124 | 2 | 1 | 369 | 1 | 365 | 2.48e-178 | 500 |
| Msa0260290 | AT1G80240.1 | 66.570 | 344 | 110 | 1 | 23 | 366 | 27 | 365 | 1.95e-169 | 478 |
| Msa0260290 | AT4G32460.4 | 67.273 | 330 | 103 | 1 | 40 | 369 | 1 | 325 | 2.38e-165 | 465 |
| Msa0260290 | AT4G32460.3 | 67.273 | 330 | 103 | 1 | 40 | 369 | 1 | 325 | 2.38e-165 | 465 |
| Msa0260290 | AT3G08030.1 | 52.149 | 349 | 160 | 2 | 15 | 361 | 16 | 359 | 1.60e-122 | 358 |
| Msa0260290 | AT2G41800.1 | 48.611 | 360 | 173 | 2 | 15 | 367 | 16 | 370 | 1.66e-120 | 353 |
| Msa0260290 | AT2G41810.1 | 47.011 | 368 | 183 | 2 | 4 | 364 | 5 | 367 | 2.57e-118 | 348 |
| Msa0260290 | AT3G08030.2 | 53.106 | 322 | 146 | 1 | 40 | 361 | 1 | 317 | 2.66e-116 | 341 |
| Msa0260290 | AT2G34510.1 | 47.801 | 341 | 178 | 0 | 23 | 363 | 38 | 378 | 4.75e-113 | 335 |
| Msa0260290 | AT1G29980.1 | 44.928 | 345 | 186 | 1 | 23 | 363 | 38 | 382 | 3.89e-108 | 323 |
| Msa0260290 | AT1G29980.2 | 44.767 | 344 | 186 | 1 | 24 | 363 | 3 | 346 | 7.72e-108 | 321 |
| Msa0260290 | AT2G34510.2 | 47.945 | 292 | 152 | 0 | 72 | 363 | 1 | 292 | 1.28e-97 | 293 |
| Msa0260290 | AT5G14150.2 | 31.746 | 378 | 212 | 14 | 5 | 363 | 7 | 357 | 6.80e-43 | 154 |
| Msa0260290 | AT5G14150.1 | 31.746 | 378 | 212 | 14 | 5 | 363 | 7 | 357 | 6.80e-43 | 154 |
Find 97 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTAGGTTTGATGCTTT+TGG | 0.196530 | 2_2:+57815285 | None:intergenic |
| TCAAGTTCCTTATCAATCTA+AGG | 0.227907 | 2_2:-57813980 | Msa0260290:CDS |
| TTGTCACTACTGTGCCCTTT+AGG | 0.246643 | 2_2:+57815271 | None:intergenic |
| TGGATAACAATTTCCCCTTC+TGG | 0.270997 | 2_2:+57814916 | None:intergenic |
| AAATTACCTCTGGTTCTTCT+AGG | 0.274083 | 2_2:+57814820 | None:intergenic |
| TATTGATTCTGTTGCCTTGA+AGG | 0.280632 | 2_2:-57814854 | Msa0260290:CDS |
| CCCATGATGCCATACCTAAT+TGG | 0.285226 | 2_2:-57815248 | Msa0260290:CDS |
| ATACCTAATTGGACAGTTTC+AGG | 0.305431 | 2_2:-57815237 | Msa0260290:CDS |
| CAAAAGGTGAAATTAAATAA+AGG | 0.320615 | 2_2:-57815111 | Msa0260290:CDS |
| TATCCTGAAACTGTCCAATT+AGG | 0.329626 | 2_2:+57815234 | None:intergenic |
| AAAACAAGGTGACATGCTTT+TGG | 0.342997 | 2_2:-57815187 | Msa0260290:CDS |
| ACTTCTGAGAAAAGAGATTA+TGG | 0.344578 | 2_2:-57815012 | Msa0260290:CDS |
| CAAGAAGTCTTCACCACAAT+TGG | 0.356227 | 2_2:-57814096 | Msa0260290:CDS |
| AATACTCCCCATGATGCATT+TGG | 0.357606 | 2_2:+57814273 | None:intergenic |
| ACCAGAGTTATCATTCTTCA+TGG | 0.360617 | 2_2:+57813873 | None:intergenic |
| CATTACTTAGGTATGCTTGT+AGG | 0.373549 | 2_2:+57813798 | None:intergenic |
| GATAACTCTGGTTCTCTTTG+TGG | 0.379593 | 2_2:-57813862 | Msa0260290:CDS |
| GGCAAAGGAGGGTTTGTTAG+AGG | 0.380600 | 2_2:-57813958 | Msa0260290:CDS |
| TCCAATTAGGTATGGCATCA+TGG | 0.399317 | 2_2:+57815247 | None:intergenic |
| CATCTTCAACACCAGAGTTA+TGG | 0.410007 | 2_2:+57814896 | None:intergenic |
| CTAACAGCATAAGCACCTTC+TGG | 0.410744 | 2_2:+57815159 | None:intergenic |
| AAAAGGTGAAATTAAATAAA+GGG | 0.413489 | 2_2:-57815110 | Msa0260290:CDS |
| CAGAAGGTGCTTATGCTGTT+AGG | 0.416893 | 2_2:-57815158 | Msa0260290:CDS |
| GTTGGGAATCATTTGCTTGT+GGG | 0.420479 | 2_2:-57814954 | Msa0260290:CDS |
| CTACCATACATAGTCTGTAT+TGG | 0.420768 | 2_2:+57814982 | None:intergenic |
| CGACAAGACGTACTAGGATT+AGG | 0.425557 | 2_2:-57813915 | Msa0260290:CDS |
| TTTGATTTGCAACATTACTT+AGG | 0.436219 | 2_2:+57813786 | None:intergenic |
| CTTTCAGGTTTATTGCCAAA+TGG | 0.445556 | 2_2:-57815324 | Msa0260290:intron |
| TACGTTGAATACATAAAATC+AGG | 0.449032 | 2_2:-57815213 | Msa0260290:CDS |
| CCAACTTCAAAGTCACCATT+TGG | 0.454460 | 2_2:+57815309 | None:intergenic |
| TCATGGTGTAAAATGTACTT+AGG | 0.454825 | 2_2:+57813890 | None:intergenic |
| GATGCATTTGGGAACACATA+TGG | 0.455308 | 2_2:+57814285 | None:intergenic |
| AGGCTACGACAAGACGTACT+AGG | 0.457315 | 2_2:-57813921 | Msa0260290:CDS |
| TCAACTATCCATCCTGGTAA+TGG | 0.458492 | 2_2:+57814219 | None:intergenic |
| ATACTCCCCATGATGCATTT+GGG | 0.460441 | 2_2:+57814274 | None:intergenic |
| ATGACTGTAGAAGCATTTGC+TGG | 0.463295 | 2_2:-57814015 | Msa0260290:CDS |
| CCTTTGCCCTTAGATTGATA+AGG | 0.464510 | 2_2:+57813973 | None:intergenic |
| ATTACTTAGGTATGCTTGTA+GGG | 0.467266 | 2_2:+57813799 | None:intergenic |
| TACCTCTGGTTCTTCTAGGT+GGG | 0.470065 | 2_2:+57814824 | None:intergenic |
| AGAGCAATTGAACTTGTAGC+AGG | 0.483311 | 2_2:-57814138 | Msa0260290:CDS |
| TGAAGCATACATTAAACAAA+AGG | 0.487173 | 2_2:-57815127 | Msa0260290:CDS |
| CCAAAAGCATCAAACCTAAA+GGG | 0.488419 | 2_2:-57815285 | Msa0260290:CDS |
| GATGCTCATGGTCCATTACC+AGG | 0.489743 | 2_2:-57814231 | Msa0260290:CDS |
| TCAATAAGTGGGCCACAAGC+TGG | 0.490288 | 2_2:+57814871 | None:intergenic |
| CCAAATGGTGACTTTGAAGT+TGG | 0.493192 | 2_2:-57815309 | Msa0260290:CDS |
| ATGTGTTCCCAAATGCATCA+TGG | 0.495027 | 2_2:-57814281 | Msa0260290:CDS |
| ATTCCAATACAGACTATGTA+TGG | 0.495208 | 2_2:-57814985 | Msa0260290:CDS |
| TCCAAAAGCATCAAACCTAA+AGG | 0.497345 | 2_2:-57815286 | Msa0260290:CDS |
| CCAATTAGGTATGGCATCAT+GGG | 0.500399 | 2_2:+57815248 | None:intergenic |
| AGGTGGGTTCAAAACCTTCA+AGG | 0.507765 | 2_2:+57814840 | None:intergenic |
| GGTTGGGAATCATTTGCTTG+TGG | 0.513196 | 2_2:-57814955 | Msa0260290:CDS |
| TATGTATGGTAGCAATGGTT+GGG | 0.515899 | 2_2:-57814971 | Msa0260290:CDS |
| TGTGTTCCCAAATGCATCAT+GGG | 0.517111 | 2_2:-57814280 | Msa0260290:CDS |
| CAAGTTCCTTATCAATCTAA+GGG | 0.522342 | 2_2:-57813979 | Msa0260290:CDS |
| ATTCTTGTAATAATATAGCT+AGG | 0.537601 | 2_2:-57813705 | Msa0260290:three_prime_UTR |
| TTACCTCTGGTTCTTCTAGG+TGG | 0.537982 | 2_2:+57814823 | None:intergenic |
| AGAGATTCAACTATCCATCC+TGG | 0.540762 | 2_2:+57814213 | None:intergenic |
| CTATGTATGGTAGCAATGGT+TGG | 0.542393 | 2_2:-57814972 | Msa0260290:CDS |
| GAAATTGTTATCCATAACTC+TGG | 0.550258 | 2_2:-57814907 | Msa0260290:CDS |
| GGTGCTTTGTCTTATACAGA+TGG | 0.550446 | 2_2:-57816926 | Msa0260290:intron |
| AAGGCAACAGAATCAATAAG+TGG | 0.552750 | 2_2:+57814859 | None:intergenic |
| TGAAACTGTCCAATTAGGTA+TGG | 0.554450 | 2_2:+57815239 | None:intergenic |
| TATCAATCTAAGGGCAAAGG+AGG | 0.558454 | 2_2:-57813970 | Msa0260290:CDS |
| ATACTCAACGAGATGGATGA+TGG | 0.558720 | 2_2:+57813749 | None:intergenic |
| AAAATGTAACAATGAGACAT+TGG | 0.564498 | 2_2:+57813540 | None:intergenic |
| TTTAGAGCTGATTATCCAGA+AGG | 0.574156 | 2_2:-57814931 | Msa0260290:CDS |
| CCTTATCAATCTAAGGGCAA+AGG | 0.577087 | 2_2:-57813973 | Msa0260290:CDS |
| GGTGCTTATGCTGTTAGGCT+AGG | 0.577781 | 2_2:-57815153 | Msa0260290:CDS |
| CAGACTATGTATGGTAGCAA+TGG | 0.586345 | 2_2:-57814976 | Msa0260290:CDS |
| CTGTATAAGACAAAGCACCT+TGG | 0.586814 | 2_2:+57816930 | None:intergenic |
| CTCATGGTCCATTACCAGGA+TGG | 0.588455 | 2_2:-57814227 | Msa0260290:CDS |
| GTTGAAGATGATCCAGCTTG+TGG | 0.588645 | 2_2:-57814883 | Msa0260290:CDS |
| ATTGATCCCACCACACATTG+AGG | 0.605497 | 2_2:-57814253 | Msa0260290:CDS |
| TAGAGCTGATTATCCAGAAG+GGG | 0.606448 | 2_2:-57814929 | Msa0260290:CDS |
| ATCAATCTAAGGGCAAAGGA+GGG | 0.607832 | 2_2:-57813969 | Msa0260290:CDS |
| GAGCATCCTCAATGTGTGGT+GGG | 0.618690 | 2_2:+57814247 | None:intergenic |
| AGAGAAGCTTAATGTGTCAG+TGG | 0.619453 | 2_2:-57815040 | Msa0260290:CDS |
| GAGCAATTGAACTTGTAGCA+GGG | 0.620186 | 2_2:-57814137 | Msa0260290:CDS |
| CCACACATTGAGGATGCTCA+TGG | 0.621467 | 2_2:-57814243 | Msa0260290:CDS |
| TTAGAGCTGATTATCCAGAA+GGG | 0.629847 | 2_2:-57814930 | Msa0260290:CDS |
| GAACACTTCACAGTACCTGA+AGG | 0.631582 | 2_2:-57814165 | Msa0260290:CDS |
| ATATTCCTCTCAATATGCCA+AGG | 0.634379 | 2_2:-57816947 | Msa0260290:CDS |
| AGGCAACAGAATCAATAAGT+GGG | 0.639484 | 2_2:+57814860 | None:intergenic |
| AAGCACCTTGGCATATTGAG+AGG | 0.644905 | 2_2:+57816942 | None:intergenic |
| TTCAATACGTGGCAATACTG+TGG | 0.645587 | 2_2:-57813585 | Msa0260290:three_prime_UTR |
| TGAGCATCCTCAATGTGTGG+TGG | 0.646759 | 2_2:+57814246 | None:intergenic |
| GCGAGCTGCACTGAACGTGA+TGG | 0.648755 | 2_2:+57815077 | None:intergenic |
| CATCACCAACTGCAAAAGTG+AGG | 0.664865 | 2_2:+57814061 | None:intergenic |
| GATGCTAATAATGCATGTGA+AGG | 0.670003 | 2_2:-57814042 | Msa0260290:CDS |
| CTTGTAATAATATAGCTAGG+AGG | 0.677897 | 2_2:-57813702 | Msa0260290:three_prime_UTR |
| GTGTTCCCAAATGCATCATG+GGG | 0.678543 | 2_2:-57814279 | Msa0260290:CDS |
| ATGTTGCAAATCAAAATGCA+TGG | 0.681924 | 2_2:-57813778 | Msa0260290:three_prime_UTR |
| ACCATGAAGAATGATAACTC+TGG | 0.691442 | 2_2:-57813874 | Msa0260290:CDS |
| CCATGAGCATCCTCAATGTG+TGG | 0.691876 | 2_2:+57814243 | None:intergenic |
| AACCCACCTAGAAGAACCAG+AGG | 0.693541 | 2_2:-57814826 | Msa0260290:intron |
| ATGAGAAGTATTTCAATACG+TGG | 0.697286 | 2_2:-57813596 | Msa0260290:three_prime_UTR |
| ATACGTGAATATATAAGACG+CGG | 0.757771 | 2_2:+57813658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAGAAAATTACAT+TGG | + | chr2_2:57813697-57813716 | None:intergenic | 10.0% |
| !!! | AATGTAATTTTCTTTTTTTA+AGG | - | chr2_2:57813696-57813715 | Msa0260290:three_prime_UTR | 10.0% |
| !!! | AATGTTATTATTTATTTTAG+AGG | - | chr2_2:57814213-57814232 | Msa0260290:CDS | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr2_2:57814377-57814396 | Msa0260290:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr2_2:57814378-57814397 | Msa0260290:intron | 10.0% |
| !! | CATAAATTGAAAAACATTAA+AGG | + | chr2_2:57813911-57813930 | None:intergenic | 15.0% |
| !!! | TATTGAATGTAAAGTTATTT+TGG | + | chr2_2:57814035-57814054 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr2_2:57814379-57814398 | Msa0260290:intron | 15.0% |
| !!! | TAATTAGAGTTTTATTGTAT+TGG | - | chr2_2:57814442-57814461 | Msa0260290:intron | 15.0% |
| !!! | AATTAGAGTTTTATTGTATT+GGG | - | chr2_2:57814443-57814462 | Msa0260290:intron | 15.0% |
| !!! | CAACTTTTATTTATATATCT+AGG | - | chr2_2:57815058-57815077 | Msa0260290:CDS | 15.0% |
| !!! | GAAAGAATTTTAAATTGATA+AGG | + | chr2_2:57815232-57815251 | None:intergenic | 15.0% |
| !!! | TATCAATTTAAAATTCTTTC+AGG | - | chr2_2:57815232-57815251 | Msa0260290:CDS | 15.0% |
| !! | AAAAGGTGAAATTAAATAAA+GGG | - | chr2_2:57815461-57815480 | Msa0260290:intron | 15.0% |
| !! | ACAAAAATATTCAATCATAT+TGG | + | chr2_2:57816109-57816128 | None:intergenic | 15.0% |
| !!! | TTGAATATTTTTGTACATTA+TGG | - | chr2_2:57816115-57816134 | Msa0260290:intron | 15.0% |
| !! | TTGATGTATGAAATTAAATT+TGG | - | chr2_2:57816190-57816209 | Msa0260290:intron | 15.0% |
| !!! | CTTTTAAGTAAGTAAACATT+TGG | + | chr2_2:57813836-57813855 | None:intergenic | 20.0% |
| !! | ACTTAAAAGTTTAACATTGA+TGG | - | chr2_2:57813847-57813866 | Msa0260290:CDS | 20.0% |
| !!! | TTGATCATATATTTTGTGTT+TGG | - | chr2_2:57813942-57813961 | Msa0260290:CDS | 20.0% |
| !! | AGTATATTGCATAAATAAAC+AGG | + | chr2_2:57814332-57814351 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_2:57814402-57814421 | Msa0260290:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr2_2:57814512-57814531 | Msa0260290:intron | 20.0% |
| !!! | TATATTTTCCACACAAAAAA+AGG | + | chr2_2:57815097-57815116 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGTGGAAAATAT+AGG | - | chr2_2:57815096-57815115 | Msa0260290:CDS | 20.0% |
| !!! | AGAAAAATTTTCCTATCATA+AGG | - | chr2_2:57815133-57815152 | Msa0260290:CDS | 20.0% |
| !! | CAAAAGGTGAAATTAAATAA+AGG | - | chr2_2:57815460-57815479 | Msa0260290:intron | 20.0% |
| !! | TGTATACAAATTTAGATACA+TGG | + | chr2_2:57815802-57815821 | None:intergenic | 20.0% |
| !! | TAGTAAAATACAATTAAGCT+AGG | + | chr2_2:57815848-57815867 | None:intergenic | 20.0% |
| !! | ATTCTTAATTTAATGCAAAG+AGG | - | chr2_2:57816157-57816176 | Msa0260290:intron | 20.0% |
| !!! | AACTATTGTTTTTGTTTGTT+TGG | - | chr2_2:57816223-57816242 | Msa0260290:intron | 20.0% |
| !!! | GTTTCCATTTTTCAATAAAT+TGG | + | chr2_2:57816254-57816273 | None:intergenic | 20.0% |
| !!! | AATTTTACATCATCAATAAC+AGG | + | chr2_2:57816736-57816755 | None:intergenic | 20.0% |
| !! | ATTCTTGTAATAATATAGCT+AGG | - | chr2_2:57816866-57816885 | Msa0260290:intron | 20.0% |
| ! | ATTACATTGGATATAGTGTT+GGG | + | chr2_2:57813684-57813703 | None:intergenic | 25.0% |
| ! | AATTACATTGGATATAGTGT+TGG | + | chr2_2:57813685-57813704 | None:intergenic | 25.0% |
| ! | CTAATAATCACAGTACATAA+AGG | + | chr2_2:57813775-57813794 | None:intergenic | 25.0% |
| ! | CTTTATGTACTGTGATTATT+AGG | - | chr2_2:57813773-57813792 | Msa0260290:three_prime_UTR | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_2:57814401-57814420 | Msa0260290:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr2_2:57814489-57814508 | Msa0260290:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr2_2:57814490-57814509 | Msa0260290:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2_2:57814511-57814530 | Msa0260290:intron | 25.0% |
| ! | GTGTATAATAGTACTTAATC+TGG | + | chr2_2:57814716-57814735 | None:intergenic | 25.0% |
| ! | TTGATACCAAAGTAACAAAA+AGG | - | chr2_2:57814804-57814823 | Msa0260290:intron | 25.0% |
| !!! | TATTGTCCTTTTTGTTACTT+TGG | + | chr2_2:57814813-57814832 | None:intergenic | 25.0% |
| !!! | ATTCTAGAACAATATAGCAT+TGG | - | chr2_2:57814921-57814940 | Msa0260290:CDS | 25.0% |
| !!! | TATGTATACCTTTTTTTGTG+TGG | - | chr2_2:57815086-57815105 | Msa0260290:CDS | 25.0% |
| ! | AATTGTTTGAACCTTATGAT+AGG | + | chr2_2:57815147-57815166 | None:intergenic | 25.0% |
| ! | TACGTTGAATACATAAAATC+AGG | - | chr2_2:57815358-57815377 | Msa0260290:intron | 25.0% |
| ! | ATAAAATCAGGACAAAAACA+AGG | - | chr2_2:57815370-57815389 | Msa0260290:intron | 25.0% |
| ! | TGAAGCATACATTAAACAAA+AGG | - | chr2_2:57815444-57815463 | Msa0260290:intron | 25.0% |
| ! | GCATATATTTATGATGTGTT+TGG | - | chr2_2:57815963-57815982 | Msa0260290:intron | 25.0% |
| ! | ACTCCATACATGTAATTAAA+CGG | - | chr2_2:57816082-57816101 | Msa0260290:intron | 25.0% |
| !! | AAAAATGGAAACTTTGAAGA+AGG | - | chr2_2:57816262-57816281 | Msa0260290:intron | 25.0% |
| !!! | TTTGATTTGCAACATTACTT+AGG | + | chr2_2:57816788-57816807 | None:intergenic | 25.0% |
| ! | AATAAAAATACTCAACGAGA+TGG | + | chr2_2:57816832-57816851 | None:intergenic | 25.0% |
| AGGAACTATATGCAATGTAA+TGG | - | chr2_2:57813716-57813735 | Msa0260290:three_prime_UTR | 30.0% | |
| ATATGCAATGTAATGGTGTT+TGG | - | chr2_2:57813723-57813742 | Msa0260290:three_prime_UTR | 30.0% | |
| TGAAGTACAACAATGAAGAA+AGG | + | chr2_2:57813873-57813892 | None:intergenic | 30.0% | |
| !! | ATTCGATTCAGCTCATTTTT+AGG | + | chr2_2:57814145-57814164 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_2:57814386-57814405 | Msa0260290:intron | 30.0% | |
| CAAGTCAAACAACATAAGAA+CGG | + | chr2_2:57814787-57814806 | None:intergenic | 30.0% | |
| AAATGTGATGTGAGAATATC+AGG | - | chr2_2:57814836-57814855 | Msa0260290:CDS | 30.0% | |
| !!! | TCTTTTTCAAGAGCACTTTT+TGG | + | chr2_2:57815033-57815052 | None:intergenic | 30.0% |
| ! | TAATCTCTTTTCTCAGAAGT+TGG | + | chr2_2:57815559-57815578 | None:intergenic | 30.0% |
| ! | ACTTCTGAGAAAAGAGATTA+TGG | - | chr2_2:57815559-57815578 | Msa0260290:intron | 30.0% |
| ATTCCAATACAGACTATGTA+TGG | - | chr2_2:57815586-57815605 | Msa0260290:intron | 30.0% | |
| GAAATTGTTATCCATAACTC+TGG | - | chr2_2:57815664-57815683 | Msa0260290:intron | 30.0% | |
| TTATGATGTGTTTGGATTGA+CGG | - | chr2_2:57815971-57815990 | Msa0260290:intron | 30.0% | |
| ! | GTTAATGTGATTTTCGCAAT+TGG | - | chr2_2:57816017-57816036 | Msa0260290:intron | 30.0% |
| GCAGCCAATTTATTGAAAAA+TGG | - | chr2_2:57816247-57816266 | Msa0260290:intron | 30.0% | |
| ! | GACATAAACTTTTCCAATTG+TGG | + | chr2_2:57816491-57816510 | None:intergenic | 30.0% |
| TCAAGTTCCTTATCAATCTA+AGG | - | chr2_2:57816591-57816610 | Msa0260290:intron | 30.0% | |
| CAAGTTCCTTATCAATCTAA+GGG | - | chr2_2:57816592-57816611 | Msa0260290:intron | 30.0% | |
| TCATGGTGTAAAATGTACTT+AGG | + | chr2_2:57816684-57816703 | None:intergenic | 30.0% | |
| ATTACTTAGGTATGCTTGTA+GGG | + | chr2_2:57816775-57816794 | None:intergenic | 30.0% | |
| ATGTTGCAAATCAAAATGCA+TGG | - | chr2_2:57816793-57816812 | Msa0260290:intron | 30.0% | |
| CTTGTAATAATATAGCTAGG+AGG | - | chr2_2:57816869-57816888 | Msa0260290:intron | 30.0% | |
| ATACGTGAATATATAAGACG+CGG | + | chr2_2:57816916-57816935 | None:intergenic | 30.0% | |
| !! | ATGAGAAGTATTTCAATACG+TGG | - | chr2_2:57816975-57816994 | Msa0260290:CDS | 30.0% |
| ATATTCCTCTCAATATGCCA+AGG | - | chr2_2:57813624-57813643 | Msa0260290:three_prime_UTR | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr2_2:57814525-57814544 | Msa0260290:intron | 35.0% | |
| !! | GTTCTAGAATCTAGATCTCT+AGG | + | chr2_2:57814911-57814930 | None:intergenic | 35.0% |
| CTAACATGTTCCTTATCACA+TGG | - | chr2_2:57814997-57815016 | Msa0260290:CDS | 35.0% | |
| TGTGGAAAATATAGGTCTCA+TGG | - | chr2_2:57815104-57815123 | Msa0260290:CDS | 35.0% | |
| GTGGAAAATATAGGTCTCAT+GGG | - | chr2_2:57815105-57815124 | Msa0260290:CDS | 35.0% | |
| TGGAAAATATAGGTCTCATG+GGG | - | chr2_2:57815106-57815125 | Msa0260290:CDS | 35.0% | |
| !! | CTTTCAGGTTTATTGCCAAA+TGG | - | chr2_2:57815247-57815266 | Msa0260290:CDS | 35.0% |
| !! | TCCAAAAGCATCAAACCTAA+AGG | - | chr2_2:57815285-57815304 | Msa0260290:CDS | 35.0% |
| !! | CCAAAAGCATCAAACCTAAA+GGG | - | chr2_2:57815286-57815305 | Msa0260290:CDS | 35.0% |
| TGAAACTGTCCAATTAGGTA+TGG | + | chr2_2:57815335-57815354 | None:intergenic | 35.0% | |
| ATACCTAATTGGACAGTTTC+AGG | - | chr2_2:57815334-57815353 | Msa0260290:intron | 35.0% | |
| TATCCTGAAACTGTCCAATT+AGG | + | chr2_2:57815340-57815359 | None:intergenic | 35.0% | |
| ! | AAAACAAGGTGACATGCTTT+TGG | - | chr2_2:57815384-57815403 | Msa0260290:intron | 35.0% |
| CTACCATACATAGTCTGTAT+TGG | + | chr2_2:57815592-57815611 | None:intergenic | 35.0% | |
| TATGTATGGTAGCAATGGTT+GGG | - | chr2_2:57815600-57815619 | Msa0260290:intron | 35.0% | |
| ! | TTTAGAGCTGATTATCCAGA+AGG | - | chr2_2:57815640-57815659 | Msa0260290:intron | 35.0% |
| TTAGAGCTGATTATCCAGAA+GGG | - | chr2_2:57815641-57815660 | Msa0260290:intron | 35.0% | |
| AGGCAACAGAATCAATAAGT+GGG | + | chr2_2:57815714-57815733 | None:intergenic | 35.0% | |
| AAGGCAACAGAATCAATAAG+TGG | + | chr2_2:57815715-57815734 | None:intergenic | 35.0% | |
| !! | TATTGATTCTGTTGCCTTGA+AGG | - | chr2_2:57815717-57815736 | Msa0260290:intron | 35.0% |
| !! | AAATTACCTCTGGTTCTTCT+AGG | + | chr2_2:57815754-57815773 | None:intergenic | 35.0% |
| TAGGGAACAAAAATTACCTC+TGG | + | chr2_2:57815764-57815783 | None:intergenic | 35.0% | |
| GGACCGTTTAATTACATGTA+TGG | + | chr2_2:57816088-57816107 | None:intergenic | 35.0% | |
| ! | TCAATTGCTCTTTTTCCTTC+AGG | + | chr2_2:57816424-57816443 | None:intergenic | 35.0% |
| GATGCTAATAATGCATGTGA+AGG | - | chr2_2:57816529-57816548 | Msa0260290:intron | 35.0% | |
| ! | TAGAGGCAAACTTCGTTTTA+AGG | - | chr2_2:57816630-57816649 | Msa0260290:intron | 35.0% |
| ACCATGAAGAATGATAACTC+TGG | - | chr2_2:57816697-57816716 | Msa0260290:intron | 35.0% | |
| ACCAGAGTTATCATTCTTCA+TGG | + | chr2_2:57816701-57816720 | None:intergenic | 35.0% | |
| CATTACTTAGGTATGCTTGT+AGG | + | chr2_2:57816776-57816795 | None:intergenic | 35.0% | |
| ! | CTGTATAAGACAAAGCACCT+TGG | + | chr2_2:57813644-57813663 | None:intergenic | 40.0% |
| GGTGCTTTGTCTTATACAGA+TGG | - | chr2_2:57813645-57813664 | Msa0260290:three_prime_UTR | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | - | chr2_2:57814526-57814545 | Msa0260290:intron | 40.0% | |
| ATCCCTTTCGTCAGATCTTA+AGG | - | chr2_2:57814631-57814650 | Msa0260290:intron | 40.0% | |
| TGCCTTAAGATCTGACGAAA+GGG | + | chr2_2:57814636-57814655 | None:intergenic | 40.0% | |
| GCATTGGAAATCTCTTCACA+TGG | - | chr2_2:57814937-57814956 | Msa0260290:CDS | 40.0% | |
| TCTCTTCACATGGCTTACAA+AGG | - | chr2_2:57814947-57814966 | Msa0260290:CDS | 40.0% | |
| AGGAACATGTTAGTAAGTGC+AGG | + | chr2_2:57814990-57815009 | None:intergenic | 40.0% | |
| ACATGTTCCTTATCACATGG+TGG | - | chr2_2:57815000-57815019 | Msa0260290:CDS | 40.0% | |
| TCTTGTTCCACCATGTGATA+AGG | + | chr2_2:57815010-57815029 | None:intergenic | 40.0% | |
| CCAACTTCAAAGTCACCATT+TGG | + | chr2_2:57815265-57815284 | None:intergenic | 40.0% | |
| !! | CCAAATGGTGACTTTGAAGT+TGG | - | chr2_2:57815262-57815281 | Msa0260290:CDS | 40.0% |
| !! | CCCTTTAGGTTTGATGCTTT+TGG | + | chr2_2:57815289-57815308 | None:intergenic | 40.0% |
| CCAATTAGGTATGGCATCAT+GGG | + | chr2_2:57815326-57815345 | None:intergenic | 40.0% | |
| TCCAATTAGGTATGGCATCA+TGG | + | chr2_2:57815327-57815346 | None:intergenic | 40.0% | |
| !! | ATGCTTTTGGTTGTACCAGA+AGG | - | chr2_2:57815397-57815416 | Msa0260290:intron | 40.0% |
| AGAGAAGCTTAATGTGTCAG+TGG | - | chr2_2:57815531-57815550 | Msa0260290:intron | 40.0% | |
| CAGACTATGTATGGTAGCAA+TGG | - | chr2_2:57815595-57815614 | Msa0260290:intron | 40.0% | |
| CTATGTATGGTAGCAATGGT+TGG | - | chr2_2:57815599-57815618 | Msa0260290:intron | 40.0% | |
| GTTGGGAATCATTTGCTTGT+GGG | - | chr2_2:57815617-57815636 | Msa0260290:intron | 40.0% | |
| TAGAGCTGATTATCCAGAAG+GGG | - | chr2_2:57815642-57815661 | Msa0260290:intron | 40.0% | |
| TGGATAACAATTTCCCCTTC+TGG | + | chr2_2:57815658-57815677 | None:intergenic | 40.0% | |
| CATCTTCAACACCAGAGTTA+TGG | + | chr2_2:57815678-57815697 | None:intergenic | 40.0% | |
| TGGACATGCACTTCTATGTA+GGG | + | chr2_2:57815782-57815801 | None:intergenic | 40.0% | |
| ATGGACATGCACTTCTATGT+AGG | + | chr2_2:57815783-57815802 | None:intergenic | 40.0% | |
| GATGCATTTGGGAACACATA+TGG | + | chr2_2:57816289-57816308 | None:intergenic | 40.0% | |
| ATGTGTTCCCAAATGCATCA+TGG | - | chr2_2:57816290-57816309 | Msa0260290:intron | 40.0% | |
| TGTGTTCCCAAATGCATCAT+GGG | - | chr2_2:57816291-57816310 | Msa0260290:intron | 40.0% | |
| ATACTCCCCATGATGCATTT+GGG | + | chr2_2:57816300-57816319 | None:intergenic | 40.0% | |
| AATACTCCCCATGATGCATT+TGG | + | chr2_2:57816301-57816320 | None:intergenic | 40.0% | |
| TCAACTATCCATCCTGGTAA+TGG | + | chr2_2:57816355-57816374 | None:intergenic | 40.0% | |
| AGAGATTCAACTATCCATCC+TGG | + | chr2_2:57816361-57816380 | None:intergenic | 40.0% | |
| AGAGCAATTGAACTTGTAGC+AGG | - | chr2_2:57816433-57816452 | Msa0260290:intron | 40.0% | |
| GAGCAATTGAACTTGTAGCA+GGG | - | chr2_2:57816434-57816453 | Msa0260290:intron | 40.0% | |
| CAAGAAGTCTTCACCACAAT+TGG | - | chr2_2:57816475-57816494 | Msa0260290:intron | 40.0% | |
| !! | TATGTCCTCACTTTTGCAGT+TGG | - | chr2_2:57816505-57816524 | Msa0260290:intron | 40.0% |
| !! | ATGACTGTAGAAGCATTTGC+TGG | - | chr2_2:57816556-57816575 | Msa0260290:intron | 40.0% |
| CCTTTGCCCTTAGATTGATA+AGG | + | chr2_2:57816601-57816620 | None:intergenic | 40.0% | |
| CCTTATCAATCTAAGGGCAA+AGG | - | chr2_2:57816598-57816617 | Msa0260290:intron | 40.0% | |
| TATCAATCTAAGGGCAAAGG+AGG | - | chr2_2:57816601-57816620 | Msa0260290:intron | 40.0% | |
| ATCAATCTAAGGGCAAAGGA+GGG | - | chr2_2:57816602-57816621 | Msa0260290:intron | 40.0% | |
| !! | GATAACTCTGGTTCTCTTTG+TGG | - | chr2_2:57816709-57816728 | Msa0260290:intron | 40.0% |
| ATACTCAACGAGATGGATGA+TGG | + | chr2_2:57816825-57816844 | None:intergenic | 40.0% | |
| TTCAATACGTGGCAATACTG+TGG | - | chr2_2:57816986-57817005 | Msa0260290:exon | 40.0% | |
| AAGCACCTTGGCATATTGAG+AGG | + | chr2_2:57813632-57813651 | None:intergenic | 45.0% | |
| TATTACTTCCTCCTCAGTCC+CGG | + | chr2_2:57814547-57814566 | None:intergenic | 45.0% | |
| ATCTGACGAAAGGGATGTTG+TGG | + | chr2_2:57814627-57814646 | None:intergenic | 45.0% | |
| GTGCCTTAAGATCTGACGAA+AGG | + | chr2_2:57814637-57814656 | None:intergenic | 45.0% | |
| TGTTAGTAAGTGCAGGCTGT+GGG | + | chr2_2:57814983-57815002 | None:intergenic | 45.0% | |
| ATGTTAGTAAGTGCAGGCTG+TGG | + | chr2_2:57814984-57815003 | None:intergenic | 45.0% | |
| TTGTCACTACTGTGCCCTTT+AGG | + | chr2_2:57815303-57815322 | None:intergenic | 45.0% | |
| CCCATGATGCCATACCTAAT+TGG | - | chr2_2:57815323-57815342 | Msa0260290:intron | 45.0% | |
| CTAACAGCATAAGCACCTTC+TGG | + | chr2_2:57815415-57815434 | None:intergenic | 45.0% | |
| !! | CAGAAGGTGCTTATGCTGTT+AGG | - | chr2_2:57815413-57815432 | Msa0260290:intron | 45.0% |
| GGTTGGGAATCATTTGCTTG+TGG | - | chr2_2:57815616-57815635 | Msa0260290:intron | 45.0% | |
| GTTGAAGATGATCCAGCTTG+TGG | - | chr2_2:57815688-57815707 | Msa0260290:intron | 45.0% | |
| ! | AGGTGGGTTCAAAACCTTCA+AGG | + | chr2_2:57815734-57815753 | None:intergenic | 45.0% |
| !! | TACCTCTGGTTCTTCTAGGT+GGG | + | chr2_2:57815750-57815769 | None:intergenic | 45.0% |
| !! | TTACCTCTGGTTCTTCTAGG+TGG | + | chr2_2:57815751-57815770 | None:intergenic | 45.0% |
| GTGTTCCCAAATGCATCATG+GGG | - | chr2_2:57816292-57816311 | Msa0260290:intron | 45.0% | |
| ATTGATCCCACCACACATTG+AGG | - | chr2_2:57816318-57816337 | Msa0260290:intron | 45.0% | |
| GAACACTTCACAGTACCTGA+AGG | - | chr2_2:57816406-57816425 | Msa0260290:intron | 45.0% | |
| CATCACCAACTGCAAAAGTG+AGG | + | chr2_2:57816513-57816532 | None:intergenic | 45.0% | |
| CGACAAGACGTACTAGGATT+AGG | - | chr2_2:57816656-57816675 | Msa0260290:intron | 45.0% | |
| !!! | ATTTTTTTTTACAAATAAAT+AGG | + | chr2_2:57814745-57814764 | None:intergenic | 5.0% |
| GGTGCTTATGCTGTTAGGCT+AGG | - | chr2_2:57815418-57815437 | Msa0260290:intron | 50.0% | |
| TCAATAAGTGGGCCACAAGC+TGG | + | chr2_2:57815703-57815722 | None:intergenic | 50.0% | |
| AACCCACCTAGAAGAACCAG+AGG | - | chr2_2:57815745-57815764 | Msa0260290:intron | 50.0% | |
| GAGCATCCTCAATGTGTGGT+GGG | + | chr2_2:57816327-57816346 | None:intergenic | 50.0% | |
| TGAGCATCCTCAATGTGTGG+TGG | + | chr2_2:57816328-57816347 | None:intergenic | 50.0% | |
| CCATGAGCATCCTCAATGTG+TGG | + | chr2_2:57816331-57816350 | None:intergenic | 50.0% | |
| CCACACATTGAGGATGCTCA+TGG | - | chr2_2:57816328-57816347 | Msa0260290:intron | 50.0% | |
| GATGCTCATGGTCCATTACC+AGG | - | chr2_2:57816340-57816359 | Msa0260290:intron | 50.0% | |
| CTCATGGTCCATTACCAGGA+TGG | - | chr2_2:57816344-57816363 | Msa0260290:intron | 50.0% | |
| !! | GGCAAAGGAGGGTTTGTTAG+AGG | - | chr2_2:57816613-57816632 | Msa0260290:intron | 50.0% |
| AGGCTACGACAAGACGTACT+AGG | - | chr2_2:57816650-57816669 | Msa0260290:intron | 50.0% | |
| GGTCAGATATTCCGGGACTG+AGG | - | chr2_2:57814533-57814552 | Msa0260290:intron | 55.0% | |
| CAGATATTCCGGGACTGAGG+AGG | - | chr2_2:57814536-57814555 | Msa0260290:intron | 55.0% | |
| GCGAGCTGCACTGAACGTGA+TGG | + | chr2_2:57815497-57815516 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57813546 | 57817047 | 57813546 | ID=Msa0260290;Name=Msa0260290 |
| chr2_2 | mRNA | 57813546 | 57817047 | 57813546 | ID=Msa0260290-mRNA-1;Parent=Msa0260290;Name=Msa0260290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|1|1|3|258|373 |
| chr2_2 | exon | 57813546 | 57814342 | 57813546 | ID=Msa0260290-mRNA-1:exon:17630;Parent=Msa0260290-mRNA-1 |
| chr2_2 | exon | 57814827 | 57815339 | 57814827 | ID=Msa0260290-mRNA-1:exon:17629;Parent=Msa0260290-mRNA-1 |
| chr2_2 | exon | 57816927 | 57817047 | 57816927 | ID=Msa0260290-mRNA-1:exon:17628;Parent=Msa0260290-mRNA-1 |
| chr2_2 | five_prime_UTR | 57816997 | 57817047 | 57816997 | ID=Msa0260290-mRNA-1:five_prime_utr;Parent=Msa0260290-mRNA-1 |
| chr2_2 | CDS | 57816927 | 57816996 | 57816927 | ID=Msa0260290-mRNA-1:cds;Parent=Msa0260290-mRNA-1 |
| chr2_2 | CDS | 57814827 | 57815339 | 57814827 | ID=Msa0260290-mRNA-1:cds;Parent=Msa0260290-mRNA-1 |
| chr2_2 | CDS | 57813804 | 57814342 | 57813804 | ID=Msa0260290-mRNA-1:cds;Parent=Msa0260290-mRNA-1 |
| chr2_2 | three_prime_UTR | 57813546 | 57813803 | 57813546 | ID=Msa0260290-mRNA-1:three_prime_utr;Parent=Msa0260290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
