Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260250 | XP_003597843.1 | 98.391 | 373 | 6 | 0 | 1 | 373 | 1 | 373 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260250 | G7IMH9 | 98.391 | 373 | 6 | 0 | 1 | 373 | 1 | 373 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031120 | Msa0260250 | 0.814209 | 1.731137e-51 | -8.615850e-47 |
| Msa0094960 | Msa0260250 | 0.963400 | 4.871183e-122 | -8.615850e-47 |
| Msa0226640 | Msa0260250 | 0.862728 | 4.124725e-64 | -8.615850e-47 |
| Msa0260250 | Msa0260290 | 0.999394 | 3.325931e-308 | -8.615850e-47 |
| Msa0260250 | Msa0304250 | 0.962998 | 1.501047e-121 | -8.615850e-47 |
| Msa0260250 | Msa0550400 | 0.822118 | 2.809847e-53 | -8.615850e-47 |
| Msa0260250 | Msa0646590 | 0.819774 | 9.733749e-53 | -8.615850e-47 |
| Msa0260250 | Msa0686530 | 0.819335 | 1.226175e-52 | -8.615850e-47 |
| Msa0260250 | Msa1448390 | 0.800492 | 1.405276e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260250 | MtrunA17_Chr2g0332541 | 98.391 | 373 | 6 | 0 | 1 | 373 | 1 | 373 | 0.0 | 761 |
| Msa0260250 | MtrunA17_Chr1g0149051 | 68.661 | 351 | 104 | 2 | 20 | 369 | 31 | 376 | 0.0 | 508 |
| Msa0260250 | MtrunA17_Chr3g0089391 | 50.595 | 336 | 160 | 2 | 26 | 361 | 32 | 361 | 5.94e-119 | 349 |
| Msa0260250 | MtrunA17_Chr4g0019601 | 50.599 | 334 | 159 | 2 | 28 | 361 | 37 | 364 | 2.83e-115 | 340 |
| Msa0260250 | MtrunA17_Chr4g0019581 | 50.000 | 334 | 161 | 2 | 28 | 361 | 106 | 433 | 3.05e-114 | 339 |
| Msa0260250 | MtrunA17_Chr2g0286051 | 45.706 | 361 | 188 | 2 | 3 | 363 | 13 | 365 | 5.45e-113 | 335 |
| Msa0260250 | MtrunA17_Chr4g0019571 | 45.810 | 358 | 188 | 2 | 4 | 361 | 13 | 364 | 2.26e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260250 | AT5G11420.1 | 65.014 | 363 | 122 | 1 | 7 | 369 | 9 | 366 | 0.0 | 510 |
| Msa0260250 | AT5G25460.1 | 65.301 | 366 | 122 | 1 | 4 | 369 | 9 | 369 | 1.34e-180 | 506 |
| Msa0260250 | AT4G32460.2 | 64.865 | 370 | 124 | 2 | 1 | 369 | 1 | 365 | 2.48e-178 | 500 |
| Msa0260250 | AT4G32460.1 | 64.865 | 370 | 124 | 2 | 1 | 369 | 1 | 365 | 2.48e-178 | 500 |
| Msa0260250 | AT1G80240.1 | 66.570 | 344 | 110 | 1 | 23 | 366 | 27 | 365 | 1.95e-169 | 478 |
| Msa0260250 | AT4G32460.4 | 67.273 | 330 | 103 | 1 | 40 | 369 | 1 | 325 | 2.38e-165 | 465 |
| Msa0260250 | AT4G32460.3 | 67.273 | 330 | 103 | 1 | 40 | 369 | 1 | 325 | 2.38e-165 | 465 |
| Msa0260250 | AT3G08030.1 | 52.149 | 349 | 160 | 2 | 15 | 361 | 16 | 359 | 1.60e-122 | 358 |
| Msa0260250 | AT2G41800.1 | 48.611 | 360 | 173 | 2 | 15 | 367 | 16 | 370 | 1.66e-120 | 353 |
| Msa0260250 | AT2G41810.1 | 47.011 | 368 | 183 | 2 | 4 | 364 | 5 | 367 | 2.57e-118 | 348 |
| Msa0260250 | AT3G08030.2 | 53.106 | 322 | 146 | 1 | 40 | 361 | 1 | 317 | 2.66e-116 | 341 |
| Msa0260250 | AT2G34510.1 | 47.801 | 341 | 178 | 0 | 23 | 363 | 38 | 378 | 4.75e-113 | 335 |
| Msa0260250 | AT1G29980.1 | 44.928 | 345 | 186 | 1 | 23 | 363 | 38 | 382 | 3.89e-108 | 323 |
| Msa0260250 | AT1G29980.2 | 44.767 | 344 | 186 | 1 | 24 | 363 | 3 | 346 | 7.72e-108 | 321 |
| Msa0260250 | AT2G34510.2 | 47.945 | 292 | 152 | 0 | 72 | 363 | 1 | 292 | 1.28e-97 | 293 |
| Msa0260250 | AT5G14150.2 | 31.746 | 378 | 212 | 14 | 5 | 363 | 7 | 357 | 6.80e-43 | 154 |
| Msa0260250 | AT5G14150.1 | 31.746 | 378 | 212 | 14 | 5 | 363 | 7 | 357 | 6.80e-43 | 154 |
Find 97 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTAGGTTTGATGCTTT+TGG | 0.196530 | 2_2:+57770161 | None:intergenic |
| TCAAGTTCCTTATCAATCTA+AGG | 0.227907 | 2_2:-57768814 | Msa0260250:CDS |
| TTGTCACTACTGTGCCCTTT+AGG | 0.246643 | 2_2:+57770147 | None:intergenic |
| TGGATAACAATTTCCCCTTC+TGG | 0.270997 | 2_2:+57769792 | None:intergenic |
| AAATTACCTCTGGTTCTTCT+AGG | 0.274083 | 2_2:+57769696 | None:intergenic |
| TATTGATTCTGTTGCCTTGA+AGG | 0.280632 | 2_2:-57769730 | Msa0260250:CDS |
| CCCATGATGCCATACCTAAT+TGG | 0.285226 | 2_2:-57770124 | Msa0260250:CDS |
| ATACCTAATTGGACAGTTTC+AGG | 0.305431 | 2_2:-57770113 | Msa0260250:CDS |
| CAAAAGGTGAAATTAAATAA+AGG | 0.320615 | 2_2:-57769987 | Msa0260250:CDS |
| TATCCTGAAACTGTCCAATT+AGG | 0.329626 | 2_2:+57770110 | None:intergenic |
| AAAACAAGGTGACATGCTTT+TGG | 0.342997 | 2_2:-57770063 | Msa0260250:CDS |
| ACTTCTGAGAAAAGAGATTA+TGG | 0.344578 | 2_2:-57769888 | Msa0260250:CDS |
| CAAGAAGTCTTCACCACAAT+TGG | 0.356227 | 2_2:-57768930 | Msa0260250:CDS |
| AATACTCCCCATGATGCATT+TGG | 0.357606 | 2_2:+57769107 | None:intergenic |
| ACCAGAGTTATCATTCTTCA+TGG | 0.360617 | 2_2:+57768707 | None:intergenic |
| CATTACTTAGGTATGCTTGT+AGG | 0.373549 | 2_2:+57768632 | None:intergenic |
| GATAACTCTGGTTCTCTTTG+TGG | 0.379593 | 2_2:-57768696 | Msa0260250:CDS |
| GGCAAAGGAGGGTTTGTTAG+AGG | 0.380600 | 2_2:-57768792 | Msa0260250:CDS |
| TCCAATTAGGTATGGCATCA+TGG | 0.399317 | 2_2:+57770123 | None:intergenic |
| CATCTTCAACACCAGAGTTA+TGG | 0.410007 | 2_2:+57769772 | None:intergenic |
| CTAACAGCATAAGCACCTTC+TGG | 0.410744 | 2_2:+57770035 | None:intergenic |
| AAAAGGTGAAATTAAATAAA+GGG | 0.413489 | 2_2:-57769986 | Msa0260250:CDS |
| CAGAAGGTGCTTATGCTGTT+AGG | 0.416893 | 2_2:-57770034 | Msa0260250:CDS |
| GTTGGGAATCATTTGCTTGT+GGG | 0.420479 | 2_2:-57769830 | Msa0260250:CDS |
| CTACCATACATAGTCTGTAT+TGG | 0.420768 | 2_2:+57769858 | None:intergenic |
| CGACAAGACGTACTAGGATT+AGG | 0.425557 | 2_2:-57768749 | Msa0260250:CDS |
| TTTGATTTGCAACATTACTT+AGG | 0.436219 | 2_2:+57768620 | None:intergenic |
| CTTTCAGGTTTATTGCCAAA+TGG | 0.445556 | 2_2:-57770200 | Msa0260250:intron |
| TACGTTGAATACATAAAATC+AGG | 0.449032 | 2_2:-57770089 | Msa0260250:CDS |
| CCAACTTCAAAGTCACCATT+TGG | 0.454460 | 2_2:+57770185 | None:intergenic |
| TCATGGTGTAAAATGTACTT+AGG | 0.454825 | 2_2:+57768724 | None:intergenic |
| GATGCATTTGGGAACACATA+TGG | 0.455308 | 2_2:+57769119 | None:intergenic |
| AGGCTACGACAAGACGTACT+AGG | 0.457315 | 2_2:-57768755 | Msa0260250:CDS |
| TCAACTATCCATCCTGGTAA+TGG | 0.458492 | 2_2:+57769053 | None:intergenic |
| ATACTCCCCATGATGCATTT+GGG | 0.460441 | 2_2:+57769108 | None:intergenic |
| ATGACTGTAGAAGCATTTGC+TGG | 0.463295 | 2_2:-57768849 | Msa0260250:CDS |
| CCTTTGCCCTTAGATTGATA+AGG | 0.464510 | 2_2:+57768807 | None:intergenic |
| ATTACTTAGGTATGCTTGTA+GGG | 0.467266 | 2_2:+57768633 | None:intergenic |
| TACCTCTGGTTCTTCTAGGT+GGG | 0.470065 | 2_2:+57769700 | None:intergenic |
| AGAGCAATTGAACTTGTAGC+AGG | 0.483311 | 2_2:-57768972 | Msa0260250:CDS |
| TGAAGCATACATTAAACAAA+AGG | 0.487173 | 2_2:-57770003 | Msa0260250:CDS |
| CCAAAAGCATCAAACCTAAA+GGG | 0.488419 | 2_2:-57770161 | Msa0260250:CDS |
| GATGCTCATGGTCCATTACC+AGG | 0.489743 | 2_2:-57769065 | Msa0260250:CDS |
| TCAATAAGTGGGCCACAAGC+TGG | 0.490288 | 2_2:+57769747 | None:intergenic |
| CCAAATGGTGACTTTGAAGT+TGG | 0.493192 | 2_2:-57770185 | Msa0260250:CDS |
| ATGTGTTCCCAAATGCATCA+TGG | 0.495027 | 2_2:-57769115 | Msa0260250:CDS |
| ATTCCAATACAGACTATGTA+TGG | 0.495208 | 2_2:-57769861 | Msa0260250:CDS |
| TCCAAAAGCATCAAACCTAA+AGG | 0.497345 | 2_2:-57770162 | Msa0260250:CDS |
| CCAATTAGGTATGGCATCAT+GGG | 0.500399 | 2_2:+57770124 | None:intergenic |
| AGGTGGGTTCAAAACCTTCA+AGG | 0.507765 | 2_2:+57769716 | None:intergenic |
| GGTTGGGAATCATTTGCTTG+TGG | 0.513196 | 2_2:-57769831 | Msa0260250:CDS |
| TATGTATGGTAGCAATGGTT+GGG | 0.515899 | 2_2:-57769847 | Msa0260250:CDS |
| TGTGTTCCCAAATGCATCAT+GGG | 0.517111 | 2_2:-57769114 | Msa0260250:CDS |
| CAAGTTCCTTATCAATCTAA+GGG | 0.522342 | 2_2:-57768813 | Msa0260250:CDS |
| ATTCTTGTAATAATATAGCT+AGG | 0.537601 | 2_2:-57768539 | Msa0260250:three_prime_UTR |
| TTACCTCTGGTTCTTCTAGG+TGG | 0.537982 | 2_2:+57769699 | None:intergenic |
| AGAGATTCAACTATCCATCC+TGG | 0.540762 | 2_2:+57769047 | None:intergenic |
| CTATGTATGGTAGCAATGGT+TGG | 0.542393 | 2_2:-57769848 | Msa0260250:CDS |
| GAAATTGTTATCCATAACTC+TGG | 0.550258 | 2_2:-57769783 | Msa0260250:CDS |
| GGTGCTTTGTCTTATACAGA+TGG | 0.550446 | 2_2:-57772035 | Msa0260250:intron |
| AAGGCAACAGAATCAATAAG+TGG | 0.552750 | 2_2:+57769735 | None:intergenic |
| TGAAACTGTCCAATTAGGTA+TGG | 0.554450 | 2_2:+57770115 | None:intergenic |
| TATCAATCTAAGGGCAAAGG+AGG | 0.558454 | 2_2:-57768804 | Msa0260250:CDS |
| ATACTCAACGAGATGGATGA+TGG | 0.558720 | 2_2:+57768583 | None:intergenic |
| AAAATGTAACAATGAGACAT+TGG | 0.564498 | 2_2:+57768374 | None:intergenic |
| TTTAGAGCTGATTATCCAGA+AGG | 0.574156 | 2_2:-57769807 | Msa0260250:CDS |
| CCTTATCAATCTAAGGGCAA+AGG | 0.577087 | 2_2:-57768807 | Msa0260250:CDS |
| GGTGCTTATGCTGTTAGGCT+AGG | 0.577781 | 2_2:-57770029 | Msa0260250:CDS |
| CAGACTATGTATGGTAGCAA+TGG | 0.586345 | 2_2:-57769852 | Msa0260250:CDS |
| CTGTATAAGACAAAGCACCT+TGG | 0.586814 | 2_2:+57772039 | None:intergenic |
| CTCATGGTCCATTACCAGGA+TGG | 0.588455 | 2_2:-57769061 | Msa0260250:CDS |
| GTTGAAGATGATCCAGCTTG+TGG | 0.588645 | 2_2:-57769759 | Msa0260250:CDS |
| ATTGATCCCACCACACATTG+AGG | 0.605497 | 2_2:-57769087 | Msa0260250:CDS |
| TAGAGCTGATTATCCAGAAG+GGG | 0.606448 | 2_2:-57769805 | Msa0260250:CDS |
| ATCAATCTAAGGGCAAAGGA+GGG | 0.607832 | 2_2:-57768803 | Msa0260250:CDS |
| GAGCATCCTCAATGTGTGGT+GGG | 0.618690 | 2_2:+57769081 | None:intergenic |
| AGAGAAGCTTAATGTGTCAG+TGG | 0.619453 | 2_2:-57769916 | Msa0260250:CDS |
| GAGCAATTGAACTTGTAGCA+GGG | 0.620186 | 2_2:-57768971 | Msa0260250:CDS |
| CCACACATTGAGGATGCTCA+TGG | 0.621467 | 2_2:-57769077 | Msa0260250:CDS |
| TTAGAGCTGATTATCCAGAA+GGG | 0.629847 | 2_2:-57769806 | Msa0260250:CDS |
| GAACACTTCACAGTACCTGA+AGG | 0.631582 | 2_2:-57768999 | Msa0260250:CDS |
| ATATTCCTCTCAATATGCCA+AGG | 0.634379 | 2_2:-57772056 | Msa0260250:CDS |
| AGGCAACAGAATCAATAAGT+GGG | 0.639484 | 2_2:+57769736 | None:intergenic |
| AAGCACCTTGGCATATTGAG+AGG | 0.644905 | 2_2:+57772051 | None:intergenic |
| TTCAATACGTGGCAATACTG+TGG | 0.645587 | 2_2:-57768419 | Msa0260250:three_prime_UTR |
| TGAGCATCCTCAATGTGTGG+TGG | 0.646759 | 2_2:+57769080 | None:intergenic |
| GCGAGCTGCACTGAACGTGA+TGG | 0.648755 | 2_2:+57769953 | None:intergenic |
| CATCACCAACTGCAAAAGTG+AGG | 0.664865 | 2_2:+57768895 | None:intergenic |
| GATGCTAATAATGCATGTGA+AGG | 0.670003 | 2_2:-57768876 | Msa0260250:CDS |
| CTTGTAATAATATAGCTAGG+AGG | 0.677897 | 2_2:-57768536 | Msa0260250:three_prime_UTR |
| GTGTTCCCAAATGCATCATG+GGG | 0.678543 | 2_2:-57769113 | Msa0260250:CDS |
| ATGTTGCAAATCAAAATGCA+TGG | 0.681924 | 2_2:-57768612 | Msa0260250:three_prime_UTR |
| ACCATGAAGAATGATAACTC+TGG | 0.691442 | 2_2:-57768708 | Msa0260250:CDS |
| CCATGAGCATCCTCAATGTG+TGG | 0.691876 | 2_2:+57769077 | None:intergenic |
| AACCCACCTAGAAGAACCAG+AGG | 0.693541 | 2_2:-57769702 | Msa0260250:intron |
| ATGAGAAGTATTTCAATACG+TGG | 0.697286 | 2_2:-57768430 | Msa0260250:three_prime_UTR |
| ATACGTGAATATATAAGACG+CGG | 0.757771 | 2_2:+57768492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAGAAAATTACAT+TGG | + | chr2_2:57768531-57768550 | None:intergenic | 10.0% |
| !!! | AATGTAATTTTCTTTTTTTA+AGG | - | chr2_2:57768530-57768549 | Msa0260250:three_prime_UTR | 10.0% |
| !!! | AATGTTATTATTTATTTTAG+AGG | - | chr2_2:57769019-57769038 | Msa0260250:CDS | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr2_2:57769183-57769202 | Msa0260250:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr2_2:57769184-57769203 | Msa0260250:intron | 10.0% |
| !! | CATAAATTGAAAAACATTAA+AGG | + | chr2_2:57768717-57768736 | None:intergenic | 15.0% |
| !!! | TATTGAATGTAAAGTTATTT+TGG | + | chr2_2:57768841-57768860 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr2_2:57769185-57769204 | Msa0260250:intron | 15.0% |
| !!! | TAATTAGAGTTTTATTGTAT+TGG | - | chr2_2:57769248-57769267 | Msa0260250:intron | 15.0% |
| !!! | AATTAGAGTTTTATTGTATT+GGG | - | chr2_2:57769249-57769268 | Msa0260250:intron | 15.0% |
| !!! | GACATTTTTTTTTAGAAAAT+GGG | - | chr2_2:57769318-57769337 | Msa0260250:intron | 15.0% |
| !!! | CAACTTTTATTTATATATCT+AGG | - | chr2_2:57770125-57770144 | Msa0260250:CDS | 15.0% |
| !!! | GAAAGAATTTTAAATTGATA+AGG | + | chr2_2:57770299-57770318 | None:intergenic | 15.0% |
| !!! | TATCAATTTAAAATTCTTTC+AGG | - | chr2_2:57770299-57770318 | Msa0260250:intron | 15.0% |
| !! | AAAAGGTGAAATTAAATAAA+GGG | - | chr2_2:57770528-57770547 | Msa0260250:intron | 15.0% |
| !! | ACAAAAATATTCAATCATAT+TGG | + | chr2_2:57771212-57771231 | None:intergenic | 15.0% |
| !! | TTGATGTATGAAATTAAATT+TGG | - | chr2_2:57771299-57771318 | Msa0260250:intron | 15.0% |
| !! | ACTTAAAAGTTTAACATTGA+TGG | - | chr2_2:57768653-57768672 | Msa0260250:CDS | 20.0% |
| !!! | TTGATCATATATTTTGTGTT+TGG | - | chr2_2:57768748-57768767 | Msa0260250:CDS | 20.0% |
| !! | AGTATATTGCATAAATAAAC+AGG | + | chr2_2:57769138-57769157 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_2:57769208-57769227 | Msa0260250:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | - | chr2_2:57769317-57769336 | Msa0260250:intron | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | + | chr2_2:57769561-57769580 | None:intergenic | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | - | chr2_2:57769723-57769742 | Msa0260250:CDS | 20.0% |
| !!! | TATATTTTCCACACAAAAAA+AGG | + | chr2_2:57770164-57770183 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGTGGAAAATAT+AGG | - | chr2_2:57770163-57770182 | Msa0260250:CDS | 20.0% |
| !! | AATTGTTTGAACTTTATGAT+AGG | + | chr2_2:57770214-57770233 | None:intergenic | 20.0% |
| !! | CAAAAGGTGAAATTAAATAA+AGG | - | chr2_2:57770527-57770546 | Msa0260250:intron | 20.0% |
| !! | TGTATACAAATTTAGATACA+TGG | + | chr2_2:57770869-57770888 | None:intergenic | 20.0% |
| !! | TAGTAAAATACAATTAAGCT+AGG | + | chr2_2:57770915-57770934 | None:intergenic | 20.0% |
| !! | ATTCTTAATTTAATGCAAAG+AGG | - | chr2_2:57771266-57771285 | Msa0260250:intron | 20.0% |
| !!! | AACTATTGTTTTTGTTTGTT+TGG | - | chr2_2:57771332-57771351 | Msa0260250:intron | 20.0% |
| !!! | GTTTCCATTTTTCAATAAAT+TGG | + | chr2_2:57771363-57771382 | None:intergenic | 20.0% |
| !!! | AATTTTACATCATCAATAAC+AGG | + | chr2_2:57771845-57771864 | None:intergenic | 20.0% |
| !! | ATTCTTGTAATAATATAGCT+AGG | - | chr2_2:57771975-57771994 | Msa0260250:intron | 20.0% |
| ! | ATTACATTGGATATAGTGTT+GGG | + | chr2_2:57768518-57768537 | None:intergenic | 25.0% |
| ! | AATTACATTGGATATAGTGT+TGG | + | chr2_2:57768519-57768538 | None:intergenic | 25.0% |
| ! | CTAATAATCACAGTACATAA+AGG | + | chr2_2:57768609-57768628 | None:intergenic | 25.0% |
| ! | CTTTATGTACTGTGATTATT+AGG | - | chr2_2:57768607-57768626 | Msa0260250:three_prime_UTR | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_2:57769207-57769226 | Msa0260250:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr2_2:57769295-57769314 | Msa0260250:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr2_2:57769296-57769315 | Msa0260250:intron | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr2_2:57769547-57769566 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr2_2:57769548-57769567 | None:intergenic | 25.0% |
| ! | TTGATACCAAAGTAACAAAA+AGG | - | chr2_2:57769871-57769890 | Msa0260250:CDS | 25.0% |
| !!! | TATTGTCCTTTTTGTTACTT+TGG | + | chr2_2:57769880-57769899 | None:intergenic | 25.0% |
| !!! | ATTCTAGAACAATATAGCAT+TGG | - | chr2_2:57769988-57770007 | Msa0260250:CDS | 25.0% |
| !!! | TATGTATACCTTTTTTTGTG+TGG | - | chr2_2:57770153-57770172 | Msa0260250:CDS | 25.0% |
| ! | TACGTTGAATACATAAAATC+AGG | - | chr2_2:57770425-57770444 | Msa0260250:intron | 25.0% |
| ! | ATAAAATCAGGACAAAAACA+AGG | - | chr2_2:57770437-57770456 | Msa0260250:intron | 25.0% |
| ! | TGAAGCATACATTAAACAAA+AGG | - | chr2_2:57770511-57770530 | Msa0260250:intron | 25.0% |
| ! | GCATATATTTATGATGTGTT+TGG | - | chr2_2:57771066-57771085 | Msa0260250:intron | 25.0% |
| ! | ACTCCATACATGTAATTAAA+CGG | - | chr2_2:57771185-57771204 | Msa0260250:intron | 25.0% |
| !! | AAAAATGGAAACTTTGAAGA+AGG | - | chr2_2:57771371-57771390 | Msa0260250:intron | 25.0% |
| !!! | TTTGATTTGCAACATTACTT+AGG | + | chr2_2:57771897-57771916 | None:intergenic | 25.0% |
| ! | AATAAAAATACTCAACGAGA+TGG | + | chr2_2:57771941-57771960 | None:intergenic | 25.0% |
| AGGAACTATATGCAATGTAA+TGG | - | chr2_2:57768550-57768569 | Msa0260250:three_prime_UTR | 30.0% | |
| ATATGCAATGTAATGGTGTT+TGG | - | chr2_2:57768557-57768576 | Msa0260250:three_prime_UTR | 30.0% | |
| TGAAGTACAACAATGAAGAA+AGG | + | chr2_2:57768679-57768698 | None:intergenic | 30.0% | |
| !! | ATTCGATTCAGCTCATTTTT+AGG | + | chr2_2:57768951-57768970 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_2:57769192-57769211 | Msa0260250:intron | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr2_2:57769760-57769779 | Msa0260250:CDS | 30.0% | |
| CAAGTCAAACAACATAAGAA+CGG | + | chr2_2:57769854-57769873 | None:intergenic | 30.0% | |
| AAATGTGATGTGAGAATATC+AGG | - | chr2_2:57769903-57769922 | Msa0260250:CDS | 30.0% | |
| !!! | TCTTTTTCAAGAGCACTTTT+TGG | + | chr2_2:57770100-57770119 | None:intergenic | 30.0% |
| ! | TAATCTCTTTTCTCAGAAGT+TGG | + | chr2_2:57770626-57770645 | None:intergenic | 30.0% |
| ! | ACTTCTGAGAAAAGAGATTA+TGG | - | chr2_2:57770626-57770645 | Msa0260250:intron | 30.0% |
| ATTCCAATACAGACTATGTA+TGG | - | chr2_2:57770653-57770672 | Msa0260250:intron | 30.0% | |
| GAAATTGTTATCCATAACTC+TGG | - | chr2_2:57770731-57770750 | Msa0260250:intron | 30.0% | |
| TTATGATGTGTTTGGATTGA+CGG | - | chr2_2:57771074-57771093 | Msa0260250:intron | 30.0% | |
| ! | GTTAATGTGATTTTCGCAAT+TGG | - | chr2_2:57771120-57771139 | Msa0260250:intron | 30.0% |
| GCAGCCAATTTATTGAAAAA+TGG | - | chr2_2:57771356-57771375 | Msa0260250:intron | 30.0% | |
| ! | GACATAAACTTTTCCAATTG+TGG | + | chr2_2:57771600-57771619 | None:intergenic | 30.0% |
| TCAAGTTCCTTATCAATCTA+AGG | - | chr2_2:57771700-57771719 | Msa0260250:intron | 30.0% | |
| CAAGTTCCTTATCAATCTAA+GGG | - | chr2_2:57771701-57771720 | Msa0260250:intron | 30.0% | |
| TCATGGTGTAAAATGTACTT+AGG | + | chr2_2:57771793-57771812 | None:intergenic | 30.0% | |
| ATTACTTAGGTATGCTTGTA+GGG | + | chr2_2:57771884-57771903 | None:intergenic | 30.0% | |
| ATGTTGCAAATCAAAATGCA+TGG | - | chr2_2:57771902-57771921 | Msa0260250:intron | 30.0% | |
| CTTGTAATAATATAGCTAGG+AGG | - | chr2_2:57771978-57771997 | Msa0260250:intron | 30.0% | |
| ATACGTGAATATATAAGACG+CGG | + | chr2_2:57772025-57772044 | None:intergenic | 30.0% | |
| !! | ATGAGAAGTATTTCAATACG+TGG | - | chr2_2:57772084-57772103 | Msa0260250:CDS | 30.0% |
| ATATTCCTCTCAATATGCCA+AGG | - | chr2_2:57768458-57768477 | Msa0260250:three_prime_UTR | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr2_2:57769331-57769350 | Msa0260250:intron | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr2_2:57769543-57769562 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr2_2:57769759-57769778 | Msa0260250:CDS | 35.0% | |
| !! | GTTCTAGAATCTAGATCTCT+AGG | + | chr2_2:57769978-57769997 | None:intergenic | 35.0% |
| CTAACATGTTCCTTATCACA+TGG | - | chr2_2:57770064-57770083 | Msa0260250:CDS | 35.0% | |
| TGTGGAAAATATAGGTCTCA+TGG | - | chr2_2:57770171-57770190 | Msa0260250:CDS | 35.0% | |
| GTGGAAAATATAGGTCTCAT+GGG | - | chr2_2:57770172-57770191 | Msa0260250:CDS | 35.0% | |
| TGGAAAATATAGGTCTCATG+GGG | - | chr2_2:57770173-57770192 | Msa0260250:CDS | 35.0% | |
| !! | CTTTCAGGTTTATTGCCAAA+TGG | - | chr2_2:57770314-57770333 | Msa0260250:intron | 35.0% |
| !! | TCCAAAAGCATCAAACCTAA+AGG | - | chr2_2:57770352-57770371 | Msa0260250:intron | 35.0% |
| !! | CCAAAAGCATCAAACCTAAA+GGG | - | chr2_2:57770353-57770372 | Msa0260250:intron | 35.0% |
| TGAAACTGTCCAATTAGGTA+TGG | + | chr2_2:57770402-57770421 | None:intergenic | 35.0% | |
| ATACCTAATTGGACAGTTTC+AGG | - | chr2_2:57770401-57770420 | Msa0260250:intron | 35.0% | |
| TATCCTGAAACTGTCCAATT+AGG | + | chr2_2:57770407-57770426 | None:intergenic | 35.0% | |
| ! | AAAACAAGGTGACATGCTTT+TGG | - | chr2_2:57770451-57770470 | Msa0260250:intron | 35.0% |
| CTACCATACATAGTCTGTAT+TGG | + | chr2_2:57770659-57770678 | None:intergenic | 35.0% | |
| TATGTATGGTAGCAATGGTT+GGG | - | chr2_2:57770667-57770686 | Msa0260250:intron | 35.0% | |
| ! | TTTAGAGCTGATTATCCAGA+AGG | - | chr2_2:57770707-57770726 | Msa0260250:intron | 35.0% |
| TTAGAGCTGATTATCCAGAA+GGG | - | chr2_2:57770708-57770727 | Msa0260250:intron | 35.0% | |
| AGGCAACAGAATCAATAAGT+GGG | + | chr2_2:57770781-57770800 | None:intergenic | 35.0% | |
| AAGGCAACAGAATCAATAAG+TGG | + | chr2_2:57770782-57770801 | None:intergenic | 35.0% | |
| !! | TATTGATTCTGTTGCCTTGA+AGG | - | chr2_2:57770784-57770803 | Msa0260250:intron | 35.0% |
| !! | AAATTACCTCTGGTTCTTCT+AGG | + | chr2_2:57770821-57770840 | None:intergenic | 35.0% |
| TAGGGAACAAAAATTACCTC+TGG | + | chr2_2:57770831-57770850 | None:intergenic | 35.0% | |
| GGACCGTTTAATTACATGTA+TGG | + | chr2_2:57771191-57771210 | None:intergenic | 35.0% | |
| ! | TCAATTGCTCTTTTTCCTTC+AGG | + | chr2_2:57771533-57771552 | None:intergenic | 35.0% |
| GATGCTAATAATGCATGTGA+AGG | - | chr2_2:57771638-57771657 | Msa0260250:intron | 35.0% | |
| ! | TAGAGGCAAACTTCGTTTTA+AGG | - | chr2_2:57771739-57771758 | Msa0260250:intron | 35.0% |
| ACCATGAAGAATGATAACTC+TGG | - | chr2_2:57771806-57771825 | Msa0260250:intron | 35.0% | |
| ACCAGAGTTATCATTCTTCA+TGG | + | chr2_2:57771810-57771829 | None:intergenic | 35.0% | |
| CATTACTTAGGTATGCTTGT+AGG | + | chr2_2:57771885-57771904 | None:intergenic | 35.0% | |
| ! | CTGTATAAGACAAAGCACCT+TGG | + | chr2_2:57768478-57768497 | None:intergenic | 40.0% |
| GGTGCTTTGTCTTATACAGA+TGG | - | chr2_2:57768479-57768498 | Msa0260250:three_prime_UTR | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | - | chr2_2:57769332-57769351 | Msa0260250:intron | 40.0% | |
| ATCCCTTTCGTCAGATCTTA+AGG | - | chr2_2:57769437-57769456 | Msa0260250:intron | 40.0% | |
| TGCCTTAAGATCTGACGAAA+GGG | + | chr2_2:57769442-57769461 | None:intergenic | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr2_2:57769764-57769783 | Msa0260250:CDS | 40.0% | |
| GCATTGGAAATCTCTTCACA+TGG | - | chr2_2:57770004-57770023 | Msa0260250:CDS | 40.0% | |
| TCTCTTCACATGGCTTACAA+AGG | - | chr2_2:57770014-57770033 | Msa0260250:CDS | 40.0% | |
| AGGAACATGTTAGTAAGTGC+AGG | + | chr2_2:57770057-57770076 | None:intergenic | 40.0% | |
| ACATGTTCCTTATCACATGG+TGG | - | chr2_2:57770067-57770086 | Msa0260250:CDS | 40.0% | |
| TCTTGTTCCACCATGTGATA+AGG | + | chr2_2:57770077-57770096 | None:intergenic | 40.0% | |
| CCAACTTCAAAGTCACCATT+TGG | + | chr2_2:57770332-57770351 | None:intergenic | 40.0% | |
| !! | CCAAATGGTGACTTTGAAGT+TGG | - | chr2_2:57770329-57770348 | Msa0260250:intron | 40.0% |
| !! | CCCTTTAGGTTTGATGCTTT+TGG | + | chr2_2:57770356-57770375 | None:intergenic | 40.0% |
| CCAATTAGGTATGGCATCAT+GGG | + | chr2_2:57770393-57770412 | None:intergenic | 40.0% | |
| TCCAATTAGGTATGGCATCA+TGG | + | chr2_2:57770394-57770413 | None:intergenic | 40.0% | |
| !! | ATGCTTTTGGTTGTACCAGA+AGG | - | chr2_2:57770464-57770483 | Msa0260250:intron | 40.0% |
| AGAGAAGCTTAATGTGTCAG+TGG | - | chr2_2:57770598-57770617 | Msa0260250:intron | 40.0% | |
| CAGACTATGTATGGTAGCAA+TGG | - | chr2_2:57770662-57770681 | Msa0260250:intron | 40.0% | |
| CTATGTATGGTAGCAATGGT+TGG | - | chr2_2:57770666-57770685 | Msa0260250:intron | 40.0% | |
| GTTGGGAATCATTTGCTTGT+GGG | - | chr2_2:57770684-57770703 | Msa0260250:intron | 40.0% | |
| TAGAGCTGATTATCCAGAAG+GGG | - | chr2_2:57770709-57770728 | Msa0260250:intron | 40.0% | |
| TGGATAACAATTTCCCCTTC+TGG | + | chr2_2:57770725-57770744 | None:intergenic | 40.0% | |
| CATCTTCAACACCAGAGTTA+TGG | + | chr2_2:57770745-57770764 | None:intergenic | 40.0% | |
| TGGACATGCACTTCTATGTA+GGG | + | chr2_2:57770849-57770868 | None:intergenic | 40.0% | |
| ATGGACATGCACTTCTATGT+AGG | + | chr2_2:57770850-57770869 | None:intergenic | 40.0% | |
| GATGCATTTGGGAACACATA+TGG | + | chr2_2:57771398-57771417 | None:intergenic | 40.0% | |
| ATGTGTTCCCAAATGCATCA+TGG | - | chr2_2:57771399-57771418 | Msa0260250:intron | 40.0% | |
| TGTGTTCCCAAATGCATCAT+GGG | - | chr2_2:57771400-57771419 | Msa0260250:intron | 40.0% | |
| ATACTCCCCATGATGCATTT+GGG | + | chr2_2:57771409-57771428 | None:intergenic | 40.0% | |
| AATACTCCCCATGATGCATT+TGG | + | chr2_2:57771410-57771429 | None:intergenic | 40.0% | |
| TCAACTATCCATCCTGGTAA+TGG | + | chr2_2:57771464-57771483 | None:intergenic | 40.0% | |
| AGAGATTCAACTATCCATCC+TGG | + | chr2_2:57771470-57771489 | None:intergenic | 40.0% | |
| AGAGCAATTGAACTTGTAGC+AGG | - | chr2_2:57771542-57771561 | Msa0260250:intron | 40.0% | |
| GAGCAATTGAACTTGTAGCA+GGG | - | chr2_2:57771543-57771562 | Msa0260250:intron | 40.0% | |
| CAAGAAGTCTTCACCACAAT+TGG | - | chr2_2:57771584-57771603 | Msa0260250:intron | 40.0% | |
| !! | TATGTCCTCACTTTTGCAGT+TGG | - | chr2_2:57771614-57771633 | Msa0260250:intron | 40.0% |
| !! | ATGACTGTAGAAGCATTTGC+TGG | - | chr2_2:57771665-57771684 | Msa0260250:intron | 40.0% |
| CCTTTGCCCTTAGATTGATA+AGG | + | chr2_2:57771710-57771729 | None:intergenic | 40.0% | |
| CCTTATCAATCTAAGGGCAA+AGG | - | chr2_2:57771707-57771726 | Msa0260250:intron | 40.0% | |
| TATCAATCTAAGGGCAAAGG+AGG | - | chr2_2:57771710-57771729 | Msa0260250:intron | 40.0% | |
| ATCAATCTAAGGGCAAAGGA+GGG | - | chr2_2:57771711-57771730 | Msa0260250:intron | 40.0% | |
| !! | GATAACTCTGGTTCTCTTTG+TGG | - | chr2_2:57771818-57771837 | Msa0260250:intron | 40.0% |
| ATACTCAACGAGATGGATGA+TGG | + | chr2_2:57771934-57771953 | None:intergenic | 40.0% | |
| TTCAATACGTGGCAATACTG+TGG | - | chr2_2:57772095-57772114 | Msa0260250:exon | 40.0% | |
| AAGCACCTTGGCATATTGAG+AGG | + | chr2_2:57768466-57768485 | None:intergenic | 45.0% | |
| TATTACTTCCTCCTCAGTCC+CGG | + | chr2_2:57769353-57769372 | None:intergenic | 45.0% | |
| ATCTGACGAAAGGGATGTTG+TGG | + | chr2_2:57769433-57769452 | None:intergenic | 45.0% | |
| GTGCCTTAAGATCTGACGAA+AGG | + | chr2_2:57769443-57769462 | None:intergenic | 45.0% | |
| GGAGGGAGTAGTACTTAATC+TGG | + | chr2_2:57769522-57769541 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2_2:57769768-57769787 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | - | chr2_2:57769746-57769765 | Msa0260250:CDS | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2_2:57769768-57769787 | Msa0260250:CDS | 45.0% | |
| TGTTAGTAAGTGCAGGCTGT+GGG | + | chr2_2:57770050-57770069 | None:intergenic | 45.0% | |
| ATGTTAGTAAGTGCAGGCTG+TGG | + | chr2_2:57770051-57770070 | None:intergenic | 45.0% | |
| TTGTCACTACTGTGCCCTTT+AGG | + | chr2_2:57770370-57770389 | None:intergenic | 45.0% | |
| CCCATGATGCCATACCTAAT+TGG | - | chr2_2:57770390-57770409 | Msa0260250:intron | 45.0% | |
| CTAACAGCATAAGCACCTTC+TGG | + | chr2_2:57770482-57770501 | None:intergenic | 45.0% | |
| !! | CAGAAGGTGCTTATGCTGTT+AGG | - | chr2_2:57770480-57770499 | Msa0260250:intron | 45.0% |
| GGTTGGGAATCATTTGCTTG+TGG | - | chr2_2:57770683-57770702 | Msa0260250:intron | 45.0% | |
| GTTGAAGATGATCCAGCTTG+TGG | - | chr2_2:57770755-57770774 | Msa0260250:intron | 45.0% | |
| ! | AGGTGGGTTCAAAACCTTCA+AGG | + | chr2_2:57770801-57770820 | None:intergenic | 45.0% |
| !! | TACCTCTGGTTCTTCTAGGT+GGG | + | chr2_2:57770817-57770836 | None:intergenic | 45.0% |
| !! | TTACCTCTGGTTCTTCTAGG+TGG | + | chr2_2:57770818-57770837 | None:intergenic | 45.0% |
| GTGTTCCCAAATGCATCATG+GGG | - | chr2_2:57771401-57771420 | Msa0260250:intron | 45.0% | |
| ATTGATCCCACCACACATTG+AGG | - | chr2_2:57771427-57771446 | Msa0260250:intron | 45.0% | |
| GAACACTTCACAGTACCTGA+AGG | - | chr2_2:57771515-57771534 | Msa0260250:intron | 45.0% | |
| CATCACCAACTGCAAAAGTG+AGG | + | chr2_2:57771622-57771641 | None:intergenic | 45.0% | |
| CGACAAGACGTACTAGGATT+AGG | - | chr2_2:57771765-57771784 | Msa0260250:intron | 45.0% | |
| !!! | ATTTTTTTTTACAAATAAAT+AGG | + | chr2_2:57769812-57769831 | None:intergenic | 5.0% |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2_2:57769767-57769786 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2_2:57769767-57769786 | Msa0260250:CDS | 50.0% | |
| GGTGCTTATGCTGTTAGGCT+AGG | - | chr2_2:57770485-57770504 | Msa0260250:intron | 50.0% | |
| TCAATAAGTGGGCCACAAGC+TGG | + | chr2_2:57770770-57770789 | None:intergenic | 50.0% | |
| AACCCACCTAGAAGAACCAG+AGG | - | chr2_2:57770812-57770831 | Msa0260250:intron | 50.0% | |
| GAGCATCCTCAATGTGTGGT+GGG | + | chr2_2:57771436-57771455 | None:intergenic | 50.0% | |
| TGAGCATCCTCAATGTGTGG+TGG | + | chr2_2:57771437-57771456 | None:intergenic | 50.0% | |
| CCATGAGCATCCTCAATGTG+TGG | + | chr2_2:57771440-57771459 | None:intergenic | 50.0% | |
| CCACACATTGAGGATGCTCA+TGG | - | chr2_2:57771437-57771456 | Msa0260250:intron | 50.0% | |
| GATGCTCATGGTCCATTACC+AGG | - | chr2_2:57771449-57771468 | Msa0260250:intron | 50.0% | |
| CTCATGGTCCATTACCAGGA+TGG | - | chr2_2:57771453-57771472 | Msa0260250:intron | 50.0% | |
| !! | GGCAAAGGAGGGTTTGTTAG+AGG | - | chr2_2:57771722-57771741 | Msa0260250:intron | 50.0% |
| AGGCTACGACAAGACGTACT+AGG | - | chr2_2:57771759-57771778 | Msa0260250:intron | 50.0% | |
| GGTCAGATATTCCGGGACTG+AGG | - | chr2_2:57769339-57769358 | Msa0260250:intron | 55.0% | |
| CAGATATTCCGGGACTGAGG+AGG | - | chr2_2:57769342-57769361 | Msa0260250:intron | 55.0% | |
| GCGAGCTGCACTGAACGTGA+TGG | + | chr2_2:57770564-57770583 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57768380 | 57772156 | 57768380 | ID=Msa0260250;Name=Msa0260250 |
| chr2_2 | mRNA | 57768380 | 57772156 | 57768380 | ID=Msa0260250-mRNA-1;Parent=Msa0260250;Name=Msa0260250-mRNA-1;_AED=0.15;_eAED=0.15;_QI=51|1|1|1|1|1|3|258|373 |
| chr2_2 | exon | 57768380 | 57769176 | 57768380 | ID=Msa0260250-mRNA-1:exon:17589;Parent=Msa0260250-mRNA-1 |
| chr2_2 | exon | 57769703 | 57770215 | 57769703 | ID=Msa0260250-mRNA-1:exon:17588;Parent=Msa0260250-mRNA-1 |
| chr2_2 | exon | 57772036 | 57772156 | 57772036 | ID=Msa0260250-mRNA-1:exon:17587;Parent=Msa0260250-mRNA-1 |
| chr2_2 | five_prime_UTR | 57772106 | 57772156 | 57772106 | ID=Msa0260250-mRNA-1:five_prime_utr;Parent=Msa0260250-mRNA-1 |
| chr2_2 | CDS | 57772036 | 57772105 | 57772036 | ID=Msa0260250-mRNA-1:cds;Parent=Msa0260250-mRNA-1 |
| chr2_2 | CDS | 57769703 | 57770215 | 57769703 | ID=Msa0260250-mRNA-1:cds;Parent=Msa0260250-mRNA-1 |
| chr2_2 | CDS | 57768638 | 57769176 | 57768638 | ID=Msa0260250-mRNA-1:cds;Parent=Msa0260250-mRNA-1 |
| chr2_2 | three_prime_UTR | 57768380 | 57768637 | 57768380 | ID=Msa0260250-mRNA-1:three_prime_utr;Parent=Msa0260250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
