Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453290 | sp|F4J738|SAD2H_ARATH | 63.368 | 475 | 118 | 3 | 4 | 425 | 7 | 478 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453290 | A0A072VRZ0 | 86.555 | 476 | 10 | 2 | 1 | 425 | 1 | 473 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1413620 | Msa1453290 | 0.831777 | 1.377361e-55 | -8.615850e-47 |
| Msa1441570 | Msa1453290 | 0.831203 | 1.906934e-55 | -8.615850e-47 |
| Msa0626270 | Msa1453290 | 0.803486 | 3.406319e-49 | -8.615850e-47 |
| Msa0692790 | Msa1453290 | 0.810864 | 9.324004e-51 | -8.615850e-47 |
| Msa1267040 | Msa1453290 | 0.802117 | 6.531728e-49 | -8.615850e-47 |
| Msa0430230 | Msa1453290 | 0.826799 | 2.224879e-54 | -8.615850e-47 |
| Msa0440430 | Msa1453290 | 0.831581 | 1.539363e-55 | -8.615850e-47 |
| Msa1165090 | Msa1453290 | 0.828393 | 9.217071e-55 | -8.615850e-47 |
| Msa0586450 | Msa1453290 | 0.811662 | 6.258325e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453290 | MtrunA17_Chr1g0213861 | 86.555 | 476 | 10 | 2 | 1 | 425 | 1 | 473 | 0.0 | 824 |
| Msa1453290 | MtrunA17_Chr7g0221671 | 69.811 | 477 | 86 | 4 | 4 | 425 | 6 | 479 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453290 | AT3G59020.2 | 63.368 | 475 | 118 | 3 | 4 | 425 | 7 | 478 | 0.0 | 614 |
| Msa1453290 | AT3G59020.1 | 63.368 | 475 | 118 | 3 | 4 | 425 | 7 | 478 | 0.0 | 613 |
| Msa1453290 | AT2G31660.1 | 60.752 | 479 | 128 | 3 | 4 | 425 | 7 | 482 | 0.0 | 582 |
Find 106 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTCCTGTTGGCCATCTT+AGG | 0.178159 | tig0034569:-1163 | Msa1453290:CDS |
| GCATTATGCGGGGAAGATTT+TGG | 0.199329 | tig0034569:-2033 | Msa1453290:CDS |
| ACGCTCAAGTTCAGATTTAT+AGG | 0.205041 | tig0034569:+1217 | None:intergenic |
| GATGGAGCTCTTCTTGCTAT+TGG | 0.266710 | tig0034569:-1272 | Msa1453290:CDS |
| TCGCCGATAAAGACTTTGTT+AGG | 0.308150 | tig0034569:-2896 | Msa1453290:CDS |
| AGCTTATCTGTAAAATATTC+TGG | 0.310967 | tig0034569:-2468 | Msa1453290:CDS |
| AAAACTTCATTGCTAAGAAT+TGG | 0.314964 | tig0034569:-2944 | Msa1453290:CDS |
| ATTCCTAACAAAGTCTTTAT+CGG | 0.340148 | tig0034569:+2893 | None:intergenic |
| CAGTAGAATACAGGTCTTAT+AGG | 0.342847 | tig0034569:-1301 | Msa1453290:CDS |
| GCCTTTCTTTCATTCGGATT+CGG | 0.343757 | tig0034569:+3095 | None:intergenic |
| ATGGAGCTCTTCTTGCTATT+GGG | 0.353649 | tig0034569:-1271 | Msa1453290:CDS |
| ATGATAATGATCAAAAGCTT+TGG | 0.361240 | tig0034569:-1661 | Msa1453290:CDS |
| CGCTCAAGTTCAGATTTATA+GGG | 0.366117 | tig0034569:+1218 | None:intergenic |
| CAACACGTCTTTCCCGAGTT+TGG | 0.382141 | tig0034569:-1185 | Msa1453290:CDS |
| ATCAAAATGTATTCAGTGCT+TGG | 0.383720 | tig0034569:-2332 | Msa1453290:CDS |
| CAGTCCTGTTGGCCATCTTA+GGG | 0.388883 | tig0034569:-1162 | Msa1453290:CDS |
| GAATGGATGGATCAGGAATC+TGG | 0.390772 | tig0034569:+2509 | None:intergenic |
| CCCCATGATTTGCGAAGATC+AGG | 0.398780 | tig0034569:+2249 | None:intergenic |
| AATTCAAATCAGACGAAGAT+AGG | 0.399839 | tig0034569:-2597 | Msa1453290:intron |
| TGATAATGATCAAAAGCTTT+GGG | 0.400167 | tig0034569:-1660 | Msa1453290:CDS |
| TAAAAGAGTTGGAAGATGAT+TGG | 0.409023 | tig0034569:+3037 | None:intergenic |
| AAGATCCACATGAGTATGTT+AGG | 0.411092 | tig0034569:-1634 | Msa1453290:CDS |
| TCAGCAGCCTTTCTTTCATT+CGG | 0.412223 | tig0034569:+3089 | None:intergenic |
| CGTCTGTCAGTAAACTAACT+AGG | 0.414101 | tig0034569:-3175 | Msa1453290:five_prime_UTR |
| TTGCGAAGATCAGGATCAAC+AGG | 0.414630 | tig0034569:+2258 | None:intergenic |
| ATCCTGATCTTCGCAAATCA+TGG | 0.418182 | tig0034569:-2251 | Msa1453290:CDS |
| CAAAGAAGAGGAAGTGGAGT+GGG | 0.425945 | tig0034569:-3272 | Msa1453290:five_prime_UTR |
| TGGTTAGATATTGAAGAAGT+AGG | 0.428313 | tig0034569:+1946 | None:intergenic |
| GTGAAGCAAAGAAGAGGAAG+TGG | 0.430431 | tig0034569:-3278 | Msa1453290:five_prime_UTR |
| GAAGATGATTGGGTGCATAT+TGG | 0.439602 | tig0034569:+3048 | None:intergenic |
| TTCTTCAATATCTAACCAAC+AGG | 0.453303 | tig0034569:-1941 | Msa1453290:intron |
| CCCGAGTTTGGCAGTCCTGT+TGG | 0.454925 | tig0034569:-1173 | Msa1453290:CDS |
| ATTGGAGAGGCCTGTTCCCT+TGG | 0.469011 | tig0034569:-2289 | Msa1453290:CDS |
| TCCTGATCTTCGCAAATCAT+GGG | 0.471937 | tig0034569:-2250 | Msa1453290:CDS |
| TGTCTCGTGAATAATGTGAT+AGG | 0.472814 | tig0034569:+2567 | None:intergenic |
| TTGAAGACTTGTATAGTCCT+AGG | 0.475338 | tig0034569:-1507 | Msa1453290:CDS |
| GGTTTAGTTTAGAAAAGAGA+TGG | 0.476932 | tig0034569:-3153 | Msa1453290:exon |
| GGTTGACCTTCCAAGGGAAC+AGG | 0.477178 | tig0034569:+2279 | None:intergenic |
| ACAATGATTTGTAAAAGAGT+TGG | 0.483438 | tig0034569:+3026 | None:intergenic |
| ATCAACAGGTTGACCTTCCA+AGG | 0.484157 | tig0034569:+2272 | None:intergenic |
| GTTAAATATATTGAGAAGGT+GGG | 0.484925 | tig0034569:+2540 | None:intergenic |
| AAATCCACGGAGGCAGTCCT+AGG | 0.485246 | tig0034569:+1490 | None:intergenic |
| ATGTTTCACAAGCATTATGC+GGG | 0.488084 | tig0034569:-2044 | Msa1453290:CDS |
| CTATAAGACCTGTATTCTAC+TGG | 0.488098 | tig0034569:+1302 | None:intergenic |
| TTGGCCCTAAGATGGCCAAC+AGG | 0.489970 | tig0034569:+1158 | None:intergenic |
| TGACATTCAACAGATTTAAG+TGG | 0.490324 | tig0034569:+2006 | None:intergenic |
| GCTACTTGAATGGATGGATC+AGG | 0.491104 | tig0034569:+2502 | None:intergenic |
| GAAGTCGTTGTTATACTTGA+AGG | 0.493681 | tig0034569:-3128 | Msa1453290:CDS |
| ATGAAGCACCAGTAGAATAC+AGG | 0.501247 | tig0034569:-1310 | Msa1453290:CDS |
| GCCAACAGGACTGCCAAACT+CGG | 0.505683 | tig0034569:+1172 | None:intergenic |
| GCAAAGAAGAGGAAGTGGAG+TGG | 0.506059 | tig0034569:-3273 | Msa1453290:five_prime_UTR |
| AAAAGAGTTGGAAGATGATT+GGG | 0.509158 | tig0034569:+3038 | None:intergenic |
| TTCGCAAATCATGGGGTTGG+TGG | 0.509717 | tig0034569:-2242 | Msa1453290:CDS |
| AGTAGGTTGATAACTCTGTC+AGG | 0.510634 | tig0034569:+1963 | None:intergenic |
| AAAGGCTGCTGAACAAAGGT+TGG | 0.513295 | tig0034569:-3078 | Msa1453290:CDS |
| TGTTAAATATATTGAGAAGG+TGG | 0.516144 | tig0034569:+2539 | None:intergenic |
| AGATCAGCTACTTGAATGGA+TGG | 0.521067 | tig0034569:+2496 | None:intergenic |
| GTGAGTTGGTTCGAAAGCGC+AGG | 0.523922 | tig0034569:-1462 | Msa1453290:CDS |
| TGTATACTGTGCTGCAGCCT+CGG | 0.524758 | tig0034569:-1730 | Msa1453290:CDS |
| GTACAGCTGAGCTGAGGAAG+AGG | 0.532447 | tig0034569:-3233 | Msa1453290:five_prime_UTR |
| GAGAGGCCTGTTCCCTTGGA+AGG | 0.534183 | tig0034569:-2285 | Msa1453290:CDS |
| TCCGAATCCGAATGAAAGAA+AGG | 0.536209 | tig0034569:-3096 | Msa1453290:CDS |
| ACCGTACCTTGGCCCTAAGA+TGG | 0.536280 | tig0034569:+1150 | None:intergenic |
| CTGTTGAATGTCATTCGAGC+AGG | 0.539977 | tig0034569:-1996 | Msa1453290:CDS |
| ATCTTCGCAAATCATGGGGT+TGG | 0.544792 | tig0034569:-2245 | Msa1453290:CDS |
| TCGTGAATAATGTGATAGGC+AGG | 0.555259 | tig0034569:+2571 | None:intergenic |
| AGGTCTTATAGGCAGAAAGA+TGG | 0.556191 | tig0034569:-1290 | Msa1453290:CDS |
| CTCAAAAGAGAAGGAAGTTG+AGG | 0.557170 | tig0034569:+2852 | None:intergenic |
| GATGAGATCAGCTACTTGAA+TGG | 0.559770 | tig0034569:+2492 | None:intergenic |
| AAAGAAGAGGAAGTGGAGTG+GGG | 0.564424 | tig0034569:-3271 | Msa1453290:five_prime_UTR |
| GCTGCGAAACCCTGAAAACA+AGG | 0.567003 | tig0034569:-2078 | Msa1453290:CDS |
| GGTTATACGTACATATATAG+AGG | 0.568759 | tig0034569:+2444 | None:intergenic |
| GAGTATGTTAGGAAAGGCTA+TGG | 0.572371 | tig0034569:-1623 | Msa1453290:intron |
| GAATGGCGGCAACTTGTCTG+AGG | 0.576913 | tig0034569:+2973 | None:intergenic |
| TACAGCTGAGCTGAGGAAGA+GGG | 0.576978 | tig0034569:-3232 | Msa1453290:five_prime_UTR |
| GTCTGTCAGTAAACTAACTA+GGG | 0.577916 | tig0034569:-3174 | Msa1453290:five_prime_UTR |
| TTAAATATATTGAGAAGGTG+GGG | 0.581029 | tig0034569:+2541 | None:intergenic |
| TTGAATGTCATTCGAGCAGG+TGG | 0.583758 | tig0034569:-1993 | Msa1453290:CDS |
| ATAGCATACCTCAAAAGAGA+AGG | 0.586840 | tig0034569:+2843 | None:intergenic |
| CCACATGAGTATGTTAGGAA+AGG | 0.589934 | tig0034569:-1629 | Msa1453290:CDS |
| CTAGTTAGTTTACTGACAGA+CGG | 0.590620 | tig0034569:+3176 | None:intergenic |
| TATCATTGAAGCACATGAGA+GGG | 0.594402 | tig0034569:+1678 | None:intergenic |
| AATGTTTCACAAGCATTATG+CGG | 0.595466 | tig0034569:-2045 | Msa1453290:CDS |
| AAAGAAAGGCTGCTGAACAA+AGG | 0.597576 | tig0034569:-3082 | Msa1453290:CDS |
| CCAACAGGACTGCCAAACTC+GGG | 0.601191 | tig0034569:+1173 | None:intergenic |
| GTGTGTTAAATATATTGAGA+AGG | 0.607757 | tig0034569:+2536 | None:intergenic |
| AATATCAGAGACAGAATCGT+CGG | 0.616544 | tig0034569:+2998 | None:intergenic |
| GCGAGTGTGAAGCAAAGAAG+AGG | 0.618413 | tig0034569:-3284 | Msa1453290:five_prime_UTR |
| TTCTAAACAGACTCTACACT+CGG | 0.620641 | tig0034569:-2194 | Msa1453290:intron |
| TGAGTTGGTTCGAAAGCGCA+GGG | 0.626418 | tig0034569:-1461 | Msa1453290:CDS |
| TAGTCCTAGGACTGCCTCCG+TGG | 0.626651 | tig0034569:-1494 | Msa1453290:CDS |
| AATGGCGGCAACTTGTCTGA+GGG | 0.630984 | tig0034569:+2974 | None:intergenic |
| CAACTCACTCATAAAATCCA+CGG | 0.633012 | tig0034569:+1477 | None:intergenic |
| AAAAGAAGAACGTCAAGCCG+AGG | 0.634422 | tig0034569:+1713 | None:intergenic |
| TTATCATTGAAGCACATGAG+AGG | 0.634688 | tig0034569:+1677 | None:intergenic |
| GAAAGAGATTGAGTGAGCAG+TGG | 0.640985 | tig0034569:+2917 | None:intergenic |
| AAATGTATTCAGTGCTTGGA+TGG | 0.641307 | tig0034569:-2328 | Msa1453290:CDS |
| AGTTTACTGACAGACGGAGA+GGG | 0.645436 | tig0034569:+3182 | None:intergenic |
| CCTGATCTTCGCAAATCATG+GGG | 0.645502 | tig0034569:-2249 | Msa1453290:CDS |
| CCTTTCCTAACATACTCATG+TGG | 0.647215 | tig0034569:+1629 | None:intergenic |
| ACAGCTGAGCTGAGGAAGAG+GGG | 0.665994 | tig0034569:-3231 | Msa1453290:five_prime_UTR |
| TAGTTTACTGACAGACGGAG+AGG | 0.668057 | tig0034569:+3181 | None:intergenic |
| TCAACAGGTTGACCTTCCAA+GGG | 0.688690 | tig0034569:+2273 | None:intergenic |
| TGTTTCACAAGCATTATGCG+GGG | 0.696183 | tig0034569:-2043 | Msa1453290:CDS |
| TTGTTTGTACAGCTGAGCTG+AGG | 0.712259 | tig0034569:-3239 | Msa1453290:five_prime_UTR |
| CTCACTCATAAAATCCACGG+AGG | 0.783942 | tig0034569:+1480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAATGAATAAAATGAAA+TGG | + | tig0034569:2303-2322 | None:intergenic | 15.0% |
| !! | GTTAAGAATAATAAGATTTA+TGG | - | tig0034569:3086-3105 | Msa1453290:CDS | 15.0% |
| !! | TTTGAATGAATAAAATGAAA+TGG | + | tig0034569:2303-2322 | None:intergenic | 15.0% |
| !! | GTTAAGAATAATAAGATTTA+TGG | - | tig0034569:3086-3105 | Msa1453290:CDS | 15.0% |
| !!! | AATGAAGTTTTTGAAATGAA+TGG | + | tig0034569:1504-1523 | None:intergenic | 20.0% |
| !! | CATATTTAATAGAAAGAATG+CGG | + | tig0034569:1840-1859 | None:intergenic | 20.0% |
| !! | ATGATGAAAATAATAAGAGA+AGG | + | tig0034569:2041-2060 | None:intergenic | 20.0% |
| !! | TAAAAAAATGAAGATGAAGA+CGG | + | tig0034569:2069-2088 | None:intergenic | 20.0% |
| !!! | TTTTTTTAAATTTACGCAGT+TGG | - | tig0034569:2081-2100 | Msa1453290:CDS | 20.0% |
| !!! | TCATTGTTGAAATTTTGAAA+AGG | - | tig0034569:3046-3065 | Msa1453290:CDS | 20.0% |
| !! | GAATAATAAGATTTATGGAT+TGG | - | tig0034569:3091-3110 | Msa1453290:CDS | 20.0% |
| !!! | TATTTATGTTTTTCCATTCT+AGG | - | tig0034569:3120-3139 | Msa1453290:CDS | 20.0% |
| !!! | AATGAAGTTTTTGAAATGAA+TGG | + | tig0034569:1504-1523 | None:intergenic | 20.0% |
| !! | CATATTTAATAGAAAGAATG+CGG | + | tig0034569:1840-1859 | None:intergenic | 20.0% |
| !! | ATGATGAAAATAATAAGAGA+AGG | + | tig0034569:2041-2060 | None:intergenic | 20.0% |
| !! | TAAAAAAATGAAGATGAAGA+CGG | + | tig0034569:2069-2088 | None:intergenic | 20.0% |
| !!! | TTTTTTTAAATTTACGCAGT+TGG | - | tig0034569:2081-2100 | Msa1453290:CDS | 20.0% |
| !!! | TCATTGTTGAAATTTTGAAA+AGG | - | tig0034569:3046-3065 | Msa1453290:CDS | 20.0% |
| !! | GAATAATAAGATTTATGGAT+TGG | - | tig0034569:3091-3110 | Msa1453290:CDS | 20.0% |
| !!! | TATTTATGTTTTTCCATTCT+AGG | - | tig0034569:3120-3139 | Msa1453290:CDS | 20.0% |
| !! | ACAATGATTTGTAAAAGAGT+TGG | + | tig0034569:1434-1453 | None:intergenic | 25.0% |
| ! | AAAACTTCATTGCTAAGAAT+TGG | - | tig0034569:1513-1532 | Msa1453290:CDS | 25.0% |
| ! | ATTCCTAACAAAGTCTTTAT+CGG | + | tig0034569:1567-1586 | None:intergenic | 25.0% |
| ! | TTAAATATATTGAGAAGGTG+GGG | + | tig0034569:1919-1938 | None:intergenic | 25.0% |
| ! | GTTAAATATATTGAGAAGGT+GGG | + | tig0034569:1920-1939 | None:intergenic | 25.0% |
| ! | TGTTAAATATATTGAGAAGG+TGG | + | tig0034569:1921-1940 | None:intergenic | 25.0% |
| ! | GTGTGTTAAATATATTGAGA+AGG | + | tig0034569:1924-1943 | None:intergenic | 25.0% |
| ! | AGCTTATCTGTAAAATATTC+TGG | - | tig0034569:1989-2008 | Msa1453290:CDS | 25.0% |
| ! | TGAAAATAATAAGAGAAGGT+AGG | + | tig0034569:2037-2056 | None:intergenic | 25.0% |
| !! | TTTTGATCAAACAAAAGCTT+TGG | + | tig0034569:2112-2131 | None:intergenic | 25.0% |
| !!! | TGTTTTTAAATGTATTGGAG+AGG | - | tig0034569:2155-2174 | Msa1453290:intron | 25.0% |
| ! | TATCATATAAACCTCTTTAG+TGG | - | tig0034569:2547-2566 | Msa1453290:CDS | 25.0% |
| !! | ATTTTCTACCATCAAATTTC+AGG | - | tig0034569:2635-2654 | Msa1453290:intron | 25.0% |
| !! | ATGATAATGATCAAAAGCTT+TGG | - | tig0034569:2796-2815 | Msa1453290:intron | 25.0% |
| !! | TGATAATGATCAAAAGCTTT+GGG | - | tig0034569:2797-2816 | Msa1453290:intron | 25.0% |
| !! | ACAATGATTTGTAAAAGAGT+TGG | + | tig0034569:1434-1453 | None:intergenic | 25.0% |
| ! | AAAACTTCATTGCTAAGAAT+TGG | - | tig0034569:1513-1532 | Msa1453290:CDS | 25.0% |
| ! | ATTCCTAACAAAGTCTTTAT+CGG | + | tig0034569:1567-1586 | None:intergenic | 25.0% |
| ! | TTAAATATATTGAGAAGGTG+GGG | + | tig0034569:1919-1938 | None:intergenic | 25.0% |
| ! | GTTAAATATATTGAGAAGGT+GGG | + | tig0034569:1920-1939 | None:intergenic | 25.0% |
| ! | TGTTAAATATATTGAGAAGG+TGG | + | tig0034569:1921-1940 | None:intergenic | 25.0% |
| ! | GTGTGTTAAATATATTGAGA+AGG | + | tig0034569:1924-1943 | None:intergenic | 25.0% |
| ! | AGCTTATCTGTAAAATATTC+TGG | - | tig0034569:1989-2008 | Msa1453290:CDS | 25.0% |
| ! | TGAAAATAATAAGAGAAGGT+AGG | + | tig0034569:2037-2056 | None:intergenic | 25.0% |
| !! | TTTTGATCAAACAAAAGCTT+TGG | + | tig0034569:2112-2131 | None:intergenic | 25.0% |
| !!! | TGTTTTTAAATGTATTGGAG+AGG | - | tig0034569:2155-2174 | Msa1453290:intron | 25.0% |
| ! | TATCATATAAACCTCTTTAG+TGG | - | tig0034569:2547-2566 | Msa1453290:CDS | 25.0% |
| !! | ATTTTCTACCATCAAATTTC+AGG | - | tig0034569:2635-2654 | Msa1453290:intron | 25.0% |
| !! | ATGATAATGATCAAAAGCTT+TGG | - | tig0034569:2796-2815 | Msa1453290:intron | 25.0% |
| !! | TGATAATGATCAAAAGCTTT+GGG | - | tig0034569:2797-2816 | Msa1453290:intron | 25.0% |
| ! | GGTTTAGTTTAGAAAAGAGA+TGG | - | tig0034569:1304-1323 | Msa1453290:CDS | 30.0% |
| AAAAGAGTTGGAAGATGATT+GGG | + | tig0034569:1422-1441 | None:intergenic | 30.0% | |
| TAAAAGAGTTGGAAGATGAT+TGG | + | tig0034569:1423-1442 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTTGAAATGAATGG+CGG | + | tig0034569:1501-1520 | None:intergenic | 30.0% |
| GAATGGGAATTATTACAAAC+AGG | + | tig0034569:1680-1699 | None:intergenic | 30.0% | |
| ! | ATAATTCCCATTCCATTTTC+AGG | - | tig0034569:1687-1706 | Msa1453290:CDS | 30.0% |
| ! | TAATTCCCATTCCATTTTCA+GGG | - | tig0034569:1688-1707 | Msa1453290:CDS | 30.0% |
| TTTGATCCAATCAAGAAGAT+GGG | + | tig0034569:1771-1790 | None:intergenic | 30.0% | |
| AATTCAAATCAGACGAAGAT+AGG | - | tig0034569:1860-1879 | Msa1453290:intron | 30.0% | |
| GGTTATACGTACATATATAG+AGG | + | tig0034569:2016-2035 | None:intergenic | 30.0% | |
| ATCAAAATGTATTCAGTGCT+TGG | - | tig0034569:2125-2144 | Msa1453290:intron | 30.0% | |
| !!! | GGTGCTGTTTTTAAATGTAT+TGG | - | tig0034569:2150-2169 | Msa1453290:intron | 30.0% |
| ! | TCTATGCTTGTTTACAGTTT+TGG | - | tig0034569:2347-2366 | Msa1453290:CDS | 30.0% |
| AATGTTTCACAAGCATTATG+CGG | - | tig0034569:2412-2431 | Msa1453290:intron | 30.0% | |
| TGACATTCAACAGATTTAAG+TGG | + | tig0034569:2454-2473 | None:intergenic | 30.0% | |
| TGGTTAGATATTGAAGAAGT+AGG | + | tig0034569:2514-2533 | None:intergenic | 30.0% | |
| TTCTTCAATATCTAACCAAC+AGG | - | tig0034569:2516-2535 | Msa1453290:CDS | 30.0% | |
| !! | TATGATATAGAAGTACCTGT+TGG | + | tig0034569:2534-2553 | None:intergenic | 30.0% |
| CAATATGTCCTGAAATTTGA+TGG | + | tig0034569:2646-2665 | None:intergenic | 30.0% | |
| ! | GGTTTAGTTTAGAAAAGAGA+TGG | - | tig0034569:1304-1323 | Msa1453290:CDS | 30.0% |
| AAAAGAGTTGGAAGATGATT+GGG | + | tig0034569:1422-1441 | None:intergenic | 30.0% | |
| TAAAAGAGTTGGAAGATGAT+TGG | + | tig0034569:1423-1442 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTTGAAATGAATGG+CGG | + | tig0034569:1501-1520 | None:intergenic | 30.0% |
| GAATGGGAATTATTACAAAC+AGG | + | tig0034569:1680-1699 | None:intergenic | 30.0% | |
| ! | ATAATTCCCATTCCATTTTC+AGG | - | tig0034569:1687-1706 | Msa1453290:CDS | 30.0% |
| ! | TAATTCCCATTCCATTTTCA+GGG | - | tig0034569:1688-1707 | Msa1453290:CDS | 30.0% |
| TTTGATCCAATCAAGAAGAT+GGG | + | tig0034569:1771-1790 | None:intergenic | 30.0% | |
| AATTCAAATCAGACGAAGAT+AGG | - | tig0034569:1860-1879 | Msa1453290:intron | 30.0% | |
| GGTTATACGTACATATATAG+AGG | + | tig0034569:2016-2035 | None:intergenic | 30.0% | |
| ATCAAAATGTATTCAGTGCT+TGG | - | tig0034569:2125-2144 | Msa1453290:intron | 30.0% | |
| !!! | GGTGCTGTTTTTAAATGTAT+TGG | - | tig0034569:2150-2169 | Msa1453290:intron | 30.0% |
| ! | TCTATGCTTGTTTACAGTTT+TGG | - | tig0034569:2347-2366 | Msa1453290:CDS | 30.0% |
| AATGTTTCACAAGCATTATG+CGG | - | tig0034569:2412-2431 | Msa1453290:intron | 30.0% | |
| TGACATTCAACAGATTTAAG+TGG | + | tig0034569:2454-2473 | None:intergenic | 30.0% | |
| TGGTTAGATATTGAAGAAGT+AGG | + | tig0034569:2514-2533 | None:intergenic | 30.0% | |
| TTCTTCAATATCTAACCAAC+AGG | - | tig0034569:2516-2535 | Msa1453290:CDS | 30.0% | |
| !! | TATGATATAGAAGTACCTGT+TGG | + | tig0034569:2534-2553 | None:intergenic | 30.0% |
| CAATATGTCCTGAAATTTGA+TGG | + | tig0034569:2646-2665 | None:intergenic | 30.0% | |
| ! | CTAGTTAGTTTACTGACAGA+CGG | + | tig0034569:1284-1303 | None:intergenic | 35.0% |
| GTCTGTCAGTAAACTAACTA+GGG | - | tig0034569:1283-1302 | Msa1453290:CDS | 35.0% | |
| GAAGTCGTTGTTATACTTGA+AGG | - | tig0034569:1329-1348 | Msa1453290:intron | 35.0% | |
| AATATCAGAGACAGAATCGT+CGG | + | tig0034569:1462-1481 | None:intergenic | 35.0% | |
| AAGGAAGTTGAGGTAAAAAG+AGG | + | tig0034569:1598-1617 | None:intergenic | 35.0% | |
| ATAGCATACCTCAAAAGAGA+AGG | + | tig0034569:1617-1636 | None:intergenic | 35.0% | |
| TTGAACCCTGAAAATGGAAT+GGG | + | tig0034569:1696-1715 | None:intergenic | 35.0% | |
| !! | CGGAATGAAGAATAGTTTTG+AGG | + | tig0034569:1730-1749 | None:intergenic | 35.0% |
| TTGATCCAATCAAGAAGATG+GGG | + | tig0034569:1770-1789 | None:intergenic | 35.0% | |
| GTTTGATCCAATCAAGAAGA+TGG | + | tig0034569:1772-1791 | None:intergenic | 35.0% | |
| TGTCTCGTGAATAATGTGAT+AGG | + | tig0034569:1893-1912 | None:intergenic | 35.0% | |
| AAATGTATTCAGTGCTTGGA+TGG | - | tig0034569:2129-2148 | Msa1453290:intron | 35.0% | |
| ! | GTTGGTGGAAACTCAAAAAA+TGG | - | tig0034569:2230-2249 | Msa1453290:CDS | 35.0% |
| TTCTAAACAGACTCTACACT+CGG | - | tig0034569:2263-2282 | Msa1453290:CDS | 35.0% | |
| ATGTTTCACAAGCATTATGC+GGG | - | tig0034569:2413-2432 | Msa1453290:intron | 35.0% | |
| ATGAAATGACACCACTAAAG+AGG | + | tig0034569:2561-2580 | None:intergenic | 35.0% | |
| CATTTAACAGAGCAGCTAAT+AGG | + | tig0034569:2610-2629 | None:intergenic | 35.0% | |
| CTATTAGCTGCTCTGTTAAA+TGG | - | tig0034569:2608-2627 | Msa1453290:intron | 35.0% | |
| TATCATTGAAGCACATGAGA+GGG | + | tig0034569:2782-2801 | None:intergenic | 35.0% | |
| TTATCATTGAAGCACATGAG+AGG | + | tig0034569:2783-2802 | None:intergenic | 35.0% | |
| AAGATCCACATGAGTATGTT+AGG | - | tig0034569:2823-2842 | Msa1453290:intron | 35.0% | |
| ! | AAGGCTATGGTAAGTCTTAT+TGG | - | tig0034569:2847-2866 | Msa1453290:intron | 35.0% |
| TTGAAGACTTGTATAGTCCT+AGG | - | tig0034569:2950-2969 | Msa1453290:CDS | 35.0% | |
| CAACTCACTCATAAAATCCA+CGG | + | tig0034569:2983-3002 | None:intergenic | 35.0% | |
| CTATAAGACCTGTATTCTAC+TGG | + | tig0034569:3158-3177 | None:intergenic | 35.0% | |
| ! | CAGTAGAATACAGGTCTTAT+AGG | - | tig0034569:3156-3175 | Msa1453290:exon | 35.0% |
| CGCTCAAGTTCAGATTTATA+GGG | + | tig0034569:3242-3261 | None:intergenic | 35.0% | |
| ACGCTCAAGTTCAGATTTAT+AGG | + | tig0034569:3243-3262 | None:intergenic | 35.0% | |
| ! | CTAGTTAGTTTACTGACAGA+CGG | + | tig0034569:1284-1303 | None:intergenic | 35.0% |
| GTCTGTCAGTAAACTAACTA+GGG | - | tig0034569:1283-1302 | Msa1453290:CDS | 35.0% | |
| GAAGTCGTTGTTATACTTGA+AGG | - | tig0034569:1329-1348 | Msa1453290:intron | 35.0% | |
| AATATCAGAGACAGAATCGT+CGG | + | tig0034569:1462-1481 | None:intergenic | 35.0% | |
| AAGGAAGTTGAGGTAAAAAG+AGG | + | tig0034569:1598-1617 | None:intergenic | 35.0% | |
| ATAGCATACCTCAAAAGAGA+AGG | + | tig0034569:1617-1636 | None:intergenic | 35.0% | |
| TTGAACCCTGAAAATGGAAT+GGG | + | tig0034569:1696-1715 | None:intergenic | 35.0% | |
| !! | CGGAATGAAGAATAGTTTTG+AGG | + | tig0034569:1730-1749 | None:intergenic | 35.0% |
| TTGATCCAATCAAGAAGATG+GGG | + | tig0034569:1770-1789 | None:intergenic | 35.0% | |
| GTTTGATCCAATCAAGAAGA+TGG | + | tig0034569:1772-1791 | None:intergenic | 35.0% | |
| TGTCTCGTGAATAATGTGAT+AGG | + | tig0034569:1893-1912 | None:intergenic | 35.0% | |
| AAATGTATTCAGTGCTTGGA+TGG | - | tig0034569:2129-2148 | Msa1453290:intron | 35.0% | |
| ! | GTTGGTGGAAACTCAAAAAA+TGG | - | tig0034569:2230-2249 | Msa1453290:CDS | 35.0% |
| TTCTAAACAGACTCTACACT+CGG | - | tig0034569:2263-2282 | Msa1453290:CDS | 35.0% | |
| ATGTTTCACAAGCATTATGC+GGG | - | tig0034569:2413-2432 | Msa1453290:intron | 35.0% | |
| ATGAAATGACACCACTAAAG+AGG | + | tig0034569:2561-2580 | None:intergenic | 35.0% | |
| CATTTAACAGAGCAGCTAAT+AGG | + | tig0034569:2610-2629 | None:intergenic | 35.0% | |
| CTATTAGCTGCTCTGTTAAA+TGG | - | tig0034569:2608-2627 | Msa1453290:intron | 35.0% | |
| TATCATTGAAGCACATGAGA+GGG | + | tig0034569:2782-2801 | None:intergenic | 35.0% | |
| TTATCATTGAAGCACATGAG+AGG | + | tig0034569:2783-2802 | None:intergenic | 35.0% | |
| AAGATCCACATGAGTATGTT+AGG | - | tig0034569:2823-2842 | Msa1453290:intron | 35.0% | |
| ! | AAGGCTATGGTAAGTCTTAT+TGG | - | tig0034569:2847-2866 | Msa1453290:intron | 35.0% |
| TTGAAGACTTGTATAGTCCT+AGG | - | tig0034569:2950-2969 | Msa1453290:CDS | 35.0% | |
| CAACTCACTCATAAAATCCA+CGG | + | tig0034569:2983-3002 | None:intergenic | 35.0% | |
| CTATAAGACCTGTATTCTAC+TGG | + | tig0034569:3158-3177 | None:intergenic | 35.0% | |
| ! | CAGTAGAATACAGGTCTTAT+AGG | - | tig0034569:3156-3175 | Msa1453290:exon | 35.0% |
| CGCTCAAGTTCAGATTTATA+GGG | + | tig0034569:3242-3261 | None:intergenic | 35.0% | |
| ACGCTCAAGTTCAGATTTAT+AGG | + | tig0034569:3243-3262 | None:intergenic | 35.0% | |
| CGTCTGTCAGTAAACTAACT+AGG | - | tig0034569:1282-1301 | Msa1453290:CDS | 40.0% | |
| TCCGAATCCGAATGAAAGAA+AGG | - | tig0034569:1361-1380 | Msa1453290:intron | 40.0% | |
| GCCTTTCTTTCATTCGGATT+CGG | + | tig0034569:1365-1384 | None:intergenic | 40.0% | |
| TCAGCAGCCTTTCTTTCATT+CGG | + | tig0034569:1371-1390 | None:intergenic | 40.0% | |
| AAAGAAAGGCTGCTGAACAA+AGG | - | tig0034569:1375-1394 | Msa1453290:intron | 40.0% | |
| GAAGATGATTGGGTGCATAT+TGG | + | tig0034569:1412-1431 | None:intergenic | 40.0% | |
| TCGCCGATAAAGACTTTGTT+AGG | - | tig0034569:1561-1580 | Msa1453290:intron | 40.0% | |
| CTCAAAAGAGAAGGAAGTTG+AGG | + | tig0034569:1608-1627 | None:intergenic | 40.0% | |
| ! | CTCAACTTCCTTCTCTTTTG+AGG | - | tig0034569:1606-1625 | Msa1453290:intron | 40.0% |
| GTTGAACCCTGAAAATGGAA+TGG | + | tig0034569:1697-1716 | None:intergenic | 40.0% | |
| !! | TCCATTTTCAGGGTTCAACT+TGG | - | tig0034569:1698-1717 | Msa1453290:CDS | 40.0% |
| ! | ACCAAGTTGAACCCTGAAAA+TGG | + | tig0034569:1702-1721 | None:intergenic | 40.0% |
| AAGAATGCGGAGAACGAATA+AGG | + | tig0034569:1827-1846 | None:intergenic | 40.0% | |
| TCGTGAATAATGTGATAGGC+AGG | + | tig0034569:1889-1908 | None:intergenic | 40.0% | |
| AGATCAGCTACTTGAATGGA+TGG | + | tig0034569:1964-1983 | None:intergenic | 40.0% | |
| GATGAGATCAGCTACTTGAA+TGG | + | tig0034569:1968-1987 | None:intergenic | 40.0% | |
| ATCCTGATCTTCGCAAATCA+TGG | - | tig0034569:2206-2225 | Msa1453290:CDS | 40.0% | |
| TCCTGATCTTCGCAAATCAT+GGG | - | tig0034569:2207-2226 | Msa1453290:CDS | 40.0% | |
| !!! | GAGCAAATGCCTTGTTTTCA+GGG | + | tig0034569:2391-2410 | None:intergenic | 40.0% |
| !!! | TGAGCAAATGCCTTGTTTTC+AGG | + | tig0034569:2392-2411 | None:intergenic | 40.0% |
| TGTTTCACAAGCATTATGCG+GGG | - | tig0034569:2414-2433 | Msa1453290:intron | 40.0% | |
| !! | AGTAGGTTGATAACTCTGTC+AGG | + | tig0034569:2497-2516 | None:intergenic | 40.0% |
| CCTTTCCTAACATACTCATG+TGG | + | tig0034569:2831-2850 | None:intergenic | 40.0% | |
| CCACATGAGTATGTTAGGAA+AGG | - | tig0034569:2828-2847 | Msa1453290:intron | 40.0% | |
| GAGTATGTTAGGAAAGGCTA+TGG | - | tig0034569:2834-2853 | Msa1453290:intron | 40.0% | |
| ! | CGTGGATTTTATGAGTGAGT+TGG | - | tig0034569:2981-3000 | Msa1453290:CDS | 40.0% |
| GTGCTTCATCATACCTAGAA+TGG | + | tig0034569:3136-3155 | None:intergenic | 40.0% | |
| ! | ATGAAGCACCAGTAGAATAC+AGG | - | tig0034569:3147-3166 | Msa1453290:exon | 40.0% |
| ! | AGGTCTTATAGGCAGAAAGA+TGG | - | tig0034569:3167-3186 | Msa1453290:five_prime_UTR | 40.0% |
| !! | ATGGAGCTCTTCTTGCTATT+GGG | - | tig0034569:3186-3205 | Msa1453290:five_prime_UTR | 40.0% |
| CGTCTGTCAGTAAACTAACT+AGG | - | tig0034569:1282-1301 | Msa1453290:CDS | 40.0% | |
| TCCGAATCCGAATGAAAGAA+AGG | - | tig0034569:1361-1380 | Msa1453290:intron | 40.0% | |
| GCCTTTCTTTCATTCGGATT+CGG | + | tig0034569:1365-1384 | None:intergenic | 40.0% | |
| TCAGCAGCCTTTCTTTCATT+CGG | + | tig0034569:1371-1390 | None:intergenic | 40.0% | |
| AAAGAAAGGCTGCTGAACAA+AGG | - | tig0034569:1375-1394 | Msa1453290:intron | 40.0% | |
| GAAGATGATTGGGTGCATAT+TGG | + | tig0034569:1412-1431 | None:intergenic | 40.0% | |
| TCGCCGATAAAGACTTTGTT+AGG | - | tig0034569:1561-1580 | Msa1453290:intron | 40.0% | |
| CTCAAAAGAGAAGGAAGTTG+AGG | + | tig0034569:1608-1627 | None:intergenic | 40.0% | |
| ! | CTCAACTTCCTTCTCTTTTG+AGG | - | tig0034569:1606-1625 | Msa1453290:intron | 40.0% |
| GTTGAACCCTGAAAATGGAA+TGG | + | tig0034569:1697-1716 | None:intergenic | 40.0% | |
| !! | TCCATTTTCAGGGTTCAACT+TGG | - | tig0034569:1698-1717 | Msa1453290:CDS | 40.0% |
| ! | ACCAAGTTGAACCCTGAAAA+TGG | + | tig0034569:1702-1721 | None:intergenic | 40.0% |
| AAGAATGCGGAGAACGAATA+AGG | + | tig0034569:1827-1846 | None:intergenic | 40.0% | |
| TCGTGAATAATGTGATAGGC+AGG | + | tig0034569:1889-1908 | None:intergenic | 40.0% | |
| AGATCAGCTACTTGAATGGA+TGG | + | tig0034569:1964-1983 | None:intergenic | 40.0% | |
| GATGAGATCAGCTACTTGAA+TGG | + | tig0034569:1968-1987 | None:intergenic | 40.0% | |
| ATCCTGATCTTCGCAAATCA+TGG | - | tig0034569:2206-2225 | Msa1453290:CDS | 40.0% | |
| TCCTGATCTTCGCAAATCAT+GGG | - | tig0034569:2207-2226 | Msa1453290:CDS | 40.0% | |
| !!! | GAGCAAATGCCTTGTTTTCA+GGG | + | tig0034569:2391-2410 | None:intergenic | 40.0% |
| !!! | TGAGCAAATGCCTTGTTTTC+AGG | + | tig0034569:2392-2411 | None:intergenic | 40.0% |
| TGTTTCACAAGCATTATGCG+GGG | - | tig0034569:2414-2433 | Msa1453290:intron | 40.0% | |
| !! | AGTAGGTTGATAACTCTGTC+AGG | + | tig0034569:2497-2516 | None:intergenic | 40.0% |
| CCTTTCCTAACATACTCATG+TGG | + | tig0034569:2831-2850 | None:intergenic | 40.0% | |
| CCACATGAGTATGTTAGGAA+AGG | - | tig0034569:2828-2847 | Msa1453290:intron | 40.0% | |
| GAGTATGTTAGGAAAGGCTA+TGG | - | tig0034569:2834-2853 | Msa1453290:intron | 40.0% | |
| ! | CGTGGATTTTATGAGTGAGT+TGG | - | tig0034569:2981-3000 | Msa1453290:CDS | 40.0% |
| GTGCTTCATCATACCTAGAA+TGG | + | tig0034569:3136-3155 | None:intergenic | 40.0% | |
| ! | ATGAAGCACCAGTAGAATAC+AGG | - | tig0034569:3147-3166 | Msa1453290:exon | 40.0% |
| ! | AGGTCTTATAGGCAGAAAGA+TGG | - | tig0034569:3167-3186 | Msa1453290:five_prime_UTR | 40.0% |
| !! | ATGGAGCTCTTCTTGCTATT+GGG | - | tig0034569:3186-3205 | Msa1453290:five_prime_UTR | 40.0% |
| GTGAAGCAAAGAAGAGGAAG+TGG | - | tig0034569:1179-1198 | Msa1453290:CDS | 45.0% | |
| CAAAGAAGAGGAAGTGGAGT+GGG | - | tig0034569:1185-1204 | Msa1453290:CDS | 45.0% | |
| AAAGAAGAGGAAGTGGAGTG+GGG | - | tig0034569:1186-1205 | Msa1453290:CDS | 45.0% | |
| TTGTTTGTACAGCTGAGCTG+AGG | - | tig0034569:1218-1237 | Msa1453290:CDS | 45.0% | |
| AGTTTACTGACAGACGGAGA+GGG | + | tig0034569:1278-1297 | None:intergenic | 45.0% | |
| TAGTTTACTGACAGACGGAG+AGG | + | tig0034569:1279-1298 | None:intergenic | 45.0% | |
| AAAGGCTGCTGAACAAAGGT+TGG | - | tig0034569:1379-1398 | Msa1453290:intron | 45.0% | |
| GAAAGAGATTGAGTGAGCAG+TGG | + | tig0034569:1543-1562 | None:intergenic | 45.0% | |
| AATCAAGAAGATGGGGACAG+TGG | + | tig0034569:1763-1782 | None:intergenic | 45.0% | |
| ACTGTCCCCATCTTCTTGAT+TGG | - | tig0034569:1762-1781 | Msa1453290:intron | 45.0% | |
| GAATGGATGGATCAGGAATC+TGG | + | tig0034569:1951-1970 | None:intergenic | 45.0% | |
| GCTACTTGAATGGATGGATC+AGG | + | tig0034569:1958-1977 | None:intergenic | 45.0% | |
| ! | TCAACAGGTTGACCTTCCAA+GGG | + | tig0034569:2187-2206 | None:intergenic | 45.0% |
| ! | ATCAACAGGTTGACCTTCCA+AGG | + | tig0034569:2188-2207 | None:intergenic | 45.0% |
| TTGCGAAGATCAGGATCAAC+AGG | + | tig0034569:2202-2221 | None:intergenic | 45.0% | |
| CCTGATCTTCGCAAATCATG+GGG | - | tig0034569:2208-2227 | Msa1453290:CDS | 45.0% | |
| ATCTTCGCAAATCATGGGGT+TGG | - | tig0034569:2212-2231 | Msa1453290:CDS | 45.0% | |
| ! | GCATTATGCGGGGAAGATTT+TGG | - | tig0034569:2424-2443 | Msa1453290:intron | 45.0% |
| CTGTTGAATGTCATTCGAGC+AGG | - | tig0034569:2461-2480 | Msa1453290:CDS | 45.0% | |
| TTGAATGTCATTCGAGCAGG+TGG | - | tig0034569:2464-2483 | Msa1453290:CDS | 45.0% | |
| AAAAGAAGAACGTCAAGCCG+AGG | + | tig0034569:2747-2766 | None:intergenic | 45.0% | |
| CTCACTCATAAAATCCACGG+AGG | + | tig0034569:2980-2999 | None:intergenic | 45.0% | |
| ! | GATGGAGCTCTTCTTGCTAT+TGG | - | tig0034569:3185-3204 | Msa1453290:five_prime_UTR | 45.0% |
| ACACTCGCTTTACACCTCAA+CGG | + | tig0034569:1161-1180 | None:intergenic | 45.0% | |
| GTGAAGCAAAGAAGAGGAAG+TGG | - | tig0034569:1179-1198 | Msa1453290:CDS | 45.0% | |
| CAAAGAAGAGGAAGTGGAGT+GGG | - | tig0034569:1185-1204 | Msa1453290:CDS | 45.0% | |
| AAAGAAGAGGAAGTGGAGTG+GGG | - | tig0034569:1186-1205 | Msa1453290:CDS | 45.0% | |
| TTGTTTGTACAGCTGAGCTG+AGG | - | tig0034569:1218-1237 | Msa1453290:CDS | 45.0% | |
| AGTTTACTGACAGACGGAGA+GGG | + | tig0034569:1278-1297 | None:intergenic | 45.0% | |
| TAGTTTACTGACAGACGGAG+AGG | + | tig0034569:1279-1298 | None:intergenic | 45.0% | |
| AAAGGCTGCTGAACAAAGGT+TGG | - | tig0034569:1379-1398 | Msa1453290:intron | 45.0% | |
| GAAAGAGATTGAGTGAGCAG+TGG | + | tig0034569:1543-1562 | None:intergenic | 45.0% | |
| AATCAAGAAGATGGGGACAG+TGG | + | tig0034569:1763-1782 | None:intergenic | 45.0% | |
| ACTGTCCCCATCTTCTTGAT+TGG | - | tig0034569:1762-1781 | Msa1453290:intron | 45.0% | |
| GAATGGATGGATCAGGAATC+TGG | + | tig0034569:1951-1970 | None:intergenic | 45.0% | |
| GCTACTTGAATGGATGGATC+AGG | + | tig0034569:1958-1977 | None:intergenic | 45.0% | |
| ! | TCAACAGGTTGACCTTCCAA+GGG | + | tig0034569:2187-2206 | None:intergenic | 45.0% |
| ! | ATCAACAGGTTGACCTTCCA+AGG | + | tig0034569:2188-2207 | None:intergenic | 45.0% |
| TTGCGAAGATCAGGATCAAC+AGG | + | tig0034569:2202-2221 | None:intergenic | 45.0% | |
| CCTGATCTTCGCAAATCATG+GGG | - | tig0034569:2208-2227 | Msa1453290:CDS | 45.0% | |
| ATCTTCGCAAATCATGGGGT+TGG | - | tig0034569:2212-2231 | Msa1453290:CDS | 45.0% | |
| ! | GCATTATGCGGGGAAGATTT+TGG | - | tig0034569:2424-2443 | Msa1453290:intron | 45.0% |
| CTGTTGAATGTCATTCGAGC+AGG | - | tig0034569:2461-2480 | Msa1453290:CDS | 45.0% | |
| TTGAATGTCATTCGAGCAGG+TGG | - | tig0034569:2464-2483 | Msa1453290:CDS | 45.0% | |
| AAAAGAAGAACGTCAAGCCG+AGG | + | tig0034569:2747-2766 | None:intergenic | 45.0% | |
| CTCACTCATAAAATCCACGG+AGG | + | tig0034569:2980-2999 | None:intergenic | 45.0% | |
| ! | GATGGAGCTCTTCTTGCTAT+TGG | - | tig0034569:3185-3204 | Msa1453290:five_prime_UTR | 45.0% |
| GCGAGTGTGAAGCAAAGAAG+AGG | - | tig0034569:1173-1192 | Msa1453290:CDS | 50.0% | |
| GCAAAGAAGAGGAAGTGGAG+TGG | - | tig0034569:1184-1203 | Msa1453290:CDS | 50.0% | |
| TACAGCTGAGCTGAGGAAGA+GGG | - | tig0034569:1225-1244 | Msa1453290:CDS | 50.0% | |
| AATGGCGGCAACTTGTCTGA+GGG | + | tig0034569:1486-1505 | None:intergenic | 50.0% | |
| AGTGCGAGTGCAATGGAGAA+TGG | + | tig0034569:1648-1667 | None:intergenic | 50.0% | |
| AAGAAGATGGGGACAGTGGT+CGG | + | tig0034569:1759-1778 | None:intergenic | 50.0% | |
| ! | CCCCATGATTTGCGAAGATC+AGG | + | tig0034569:2211-2230 | None:intergenic | 50.0% |
| TTCGCAAATCATGGGGTTGG+TGG | - | tig0034569:2215-2234 | Msa1453290:CDS | 50.0% | |
| GCTGCGAAACCCTGAAAACA+AGG | - | tig0034569:2379-2398 | Msa1453290:intron | 50.0% | |
| ! | GAGCAGCTAATAGGTGTCAC+AGG | + | tig0034569:2601-2620 | None:intergenic | 50.0% |
| TGTATACTGTGCTGCAGCCT+CGG | - | tig0034569:2727-2746 | Msa1453290:intron | 50.0% | |
| !! | TGAGTTGGTTCGAAAGCGCA+GGG | - | tig0034569:2996-3015 | Msa1453290:CDS | 50.0% |
| CAACACGTCTTTCCCGAGTT+TGG | - | tig0034569:3272-3291 | Msa1453290:five_prime_UTR | 50.0% | |
| CAGTCCTGTTGGCCATCTTA+GGG | - | tig0034569:3295-3314 | Msa1453290:five_prime_UTR | 50.0% | |
| GCGAGTGTGAAGCAAAGAAG+AGG | - | tig0034569:1173-1192 | Msa1453290:CDS | 50.0% | |
| GCAAAGAAGAGGAAGTGGAG+TGG | - | tig0034569:1184-1203 | Msa1453290:CDS | 50.0% | |
| TACAGCTGAGCTGAGGAAGA+GGG | - | tig0034569:1225-1244 | Msa1453290:CDS | 50.0% | |
| AATGGCGGCAACTTGTCTGA+GGG | + | tig0034569:1486-1505 | None:intergenic | 50.0% | |
| AGTGCGAGTGCAATGGAGAA+TGG | + | tig0034569:1648-1667 | None:intergenic | 50.0% | |
| AAGAAGATGGGGACAGTGGT+CGG | + | tig0034569:1759-1778 | None:intergenic | 50.0% | |
| ! | CCCCATGATTTGCGAAGATC+AGG | + | tig0034569:2211-2230 | None:intergenic | 50.0% |
| TTCGCAAATCATGGGGTTGG+TGG | - | tig0034569:2215-2234 | Msa1453290:CDS | 50.0% | |
| GCTGCGAAACCCTGAAAACA+AGG | - | tig0034569:2379-2398 | Msa1453290:intron | 50.0% | |
| ! | GAGCAGCTAATAGGTGTCAC+AGG | + | tig0034569:2601-2620 | None:intergenic | 50.0% |
| TGTATACTGTGCTGCAGCCT+CGG | - | tig0034569:2727-2746 | Msa1453290:intron | 50.0% | |
| !! | TGAGTTGGTTCGAAAGCGCA+GGG | - | tig0034569:2996-3015 | Msa1453290:CDS | 50.0% |
| CAACACGTCTTTCCCGAGTT+TGG | - | tig0034569:3272-3291 | Msa1453290:five_prime_UTR | 50.0% | |
| CAGTCCTGTTGGCCATCTTA+GGG | - | tig0034569:3295-3314 | Msa1453290:five_prime_UTR | 50.0% | |
| GTACAGCTGAGCTGAGGAAG+AGG | - | tig0034569:1224-1243 | Msa1453290:CDS | 55.0% | |
| ACAGCTGAGCTGAGGAAGAG+GGG | - | tig0034569:1226-1245 | Msa1453290:CDS | 55.0% | |
| GAATGGCGGCAACTTGTCTG+AGG | + | tig0034569:1487-1506 | None:intergenic | 55.0% | |
| GGGACAGTGGTCGGGATAAT+CGG | + | tig0034569:1750-1769 | None:intergenic | 55.0% | |
| AGAAGATGGGGACAGTGGTC+GGG | + | tig0034569:1758-1777 | None:intergenic | 55.0% | |
| ATTGGAGAGGCCTGTTCCCT+TGG | - | tig0034569:2168-2187 | Msa1453290:intron | 55.0% | |
| GGTTGACCTTCCAAGGGAAC+AGG | + | tig0034569:2181-2200 | None:intergenic | 55.0% | |
| AAATCCACGGAGGCAGTCCT+AGG | + | tig0034569:2970-2989 | None:intergenic | 55.0% | |
| !! | GTGAGTTGGTTCGAAAGCGC+AGG | - | tig0034569:2995-3014 | Msa1453290:CDS | 55.0% |
| CCAACAGGACTGCCAAACTC+GGG | + | tig0034569:3287-3306 | None:intergenic | 55.0% | |
| GCCAACAGGACTGCCAAACT+CGG | + | tig0034569:3288-3307 | None:intergenic | 55.0% | |
| GCAGTCCTGTTGGCCATCTT+AGG | - | tig0034569:3294-3313 | Msa1453290:five_prime_UTR | 55.0% | |
| GTACAGCTGAGCTGAGGAAG+AGG | - | tig0034569:1224-1243 | Msa1453290:CDS | 55.0% | |
| ACAGCTGAGCTGAGGAAGAG+GGG | - | tig0034569:1226-1245 | Msa1453290:CDS | 55.0% | |
| GAATGGCGGCAACTTGTCTG+AGG | + | tig0034569:1487-1506 | None:intergenic | 55.0% | |
| GGGACAGTGGTCGGGATAAT+CGG | + | tig0034569:1750-1769 | None:intergenic | 55.0% | |
| AGAAGATGGGGACAGTGGTC+GGG | + | tig0034569:1758-1777 | None:intergenic | 55.0% | |
| ATTGGAGAGGCCTGTTCCCT+TGG | - | tig0034569:2168-2187 | Msa1453290:intron | 55.0% | |
| GGTTGACCTTCCAAGGGAAC+AGG | + | tig0034569:2181-2200 | None:intergenic | 55.0% | |
| AAATCCACGGAGGCAGTCCT+AGG | + | tig0034569:2970-2989 | None:intergenic | 55.0% | |
| !! | GTGAGTTGGTTCGAAAGCGC+AGG | - | tig0034569:2995-3014 | Msa1453290:CDS | 55.0% |
| CCAACAGGACTGCCAAACTC+GGG | + | tig0034569:3287-3306 | None:intergenic | 55.0% | |
| GCCAACAGGACTGCCAAACT+CGG | + | tig0034569:3288-3307 | None:intergenic | 55.0% | |
| GCAGTCCTGTTGGCCATCTT+AGG | - | tig0034569:3294-3313 | Msa1453290:five_prime_UTR | 55.0% | |
| GAGTGCGAGTGCGAGTGCAA+TGG | + | tig0034569:1655-1674 | None:intergenic | 60.0% | |
| GAGAGGCCTGTTCCCTTGGA+AGG | - | tig0034569:2172-2191 | Msa1453290:intron | 60.0% | |
| TAGTCCTAGGACTGCCTCCG+TGG | - | tig0034569:2963-2982 | Msa1453290:CDS | 60.0% | |
| CCCGAGTTTGGCAGTCCTGT+TGG | - | tig0034569:3284-3303 | Msa1453290:five_prime_UTR | 60.0% | |
| GAGTGCGAGTGCGAGTGCAA+TGG | + | tig0034569:1655-1674 | None:intergenic | 60.0% | |
| GAGAGGCCTGTTCCCTTGGA+AGG | - | tig0034569:2172-2191 | Msa1453290:intron | 60.0% | |
| TAGTCCTAGGACTGCCTCCG+TGG | - | tig0034569:2963-2982 | Msa1453290:CDS | 60.0% | |
| CCCGAGTTTGGCAGTCCTGT+TGG | - | tig0034569:3284-3303 | Msa1453290:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034569 | gene | 1160 | 3319 | 1160 | ID=Msa1453290;Name=Msa1453290 |
| tig0034569 | mRNA | 1160 | 3319 | 1160 | ID=Msa1453290-mRNA-1;Parent=Msa1453290;Name=Msa1453290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=163|0.85|0.62|1|0.71|0.62|8|0|425 |
| tig0034569 | exon | 1160 | 1337 | 1160 | ID=Msa1453290-mRNA-1:exon:19090;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 1412 | 1535 | 1412 | ID=Msa1453290-mRNA-1:exon:19089;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 1624 | 1769 | 1624 | ID=Msa1453290-mRNA-1:exon:19088;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 1942 | 2115 | 1942 | ID=Msa1453290-mRNA-1:exon:19087;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 2195 | 2379 | 2195 | ID=Msa1453290-mRNA-1:exon:19086;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 2456 | 2607 | 2456 | ID=Msa1453290-mRNA-1:exon:19085;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 2760 | 2770 | 2760 | ID=Msa1453290-mRNA-1:exon:19084;Parent=Msa1453290-mRNA-1 |
| tig0034569 | exon | 2852 | 3319 | 2852 | ID=Msa1453290-mRNA-1:exon:19083;Parent=Msa1453290-mRNA-1 |
| tig0034569 | five_prime_UTR | 3157 | 3319 | 3157 | ID=Msa1453290-mRNA-1:five_prime_utr;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 2852 | 3156 | 2852 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 2760 | 2770 | 2760 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 2456 | 2607 | 2456 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 2195 | 2379 | 2195 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 1942 | 2115 | 1942 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 1624 | 1769 | 1624 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 1412 | 1535 | 1412 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| tig0034569 | CDS | 1160 | 1337 | 1160 | ID=Msa1453290-mRNA-1:cds;Parent=Msa1453290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
