Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692790 | XP_003629736.1 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692790 | sp|B9DHQ0|TBA5_ARATH | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692790 | G7LIN7 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002420 | Msa0692790 | 0.839365 | 1.655146e-57 | -8.615850e-47 |
| Msa0003080 | Msa0692790 | 0.800608 | 1.330568e-48 | -8.615850e-47 |
| Msa0028440 | Msa0692790 | 0.832982 | 6.924914e-56 | -8.615850e-47 |
| Msa0040790 | Msa0692790 | 0.889046 | 3.438255e-73 | -8.615850e-47 |
| Msa0044160 | Msa0692790 | 0.813986 | 1.938554e-51 | -8.615850e-47 |
| Msa0077340 | Msa0692790 | 0.800410 | 1.460158e-48 | -8.615850e-47 |
| Msa0077560 | Msa0692790 | 0.817982 | 2.485557e-52 | -8.615850e-47 |
| Msa0094790 | Msa0692790 | 0.816244 | 6.110268e-52 | -8.615850e-47 |
| Msa0098070 | Msa0692790 | 0.814855 | 1.245632e-51 | -8.615850e-47 |
| Msa0118270 | Msa0692790 | 0.818442 | 1.956198e-52 | -8.615850e-47 |
| Msa0607800 | Msa0692790 | 0.818472 | 1.925842e-52 | -8.615850e-47 |
| Msa0617940 | Msa0692790 | 0.978676 | 2.511034e-146 | -8.615850e-47 |
| Msa0630440 | Msa0692790 | 0.801565 | 8.480161e-49 | -8.615850e-47 |
| Msa0641990 | Msa0692790 | 0.810828 | 9.492590e-51 | -8.615850e-47 |
| Msa0648040 | Msa0692790 | 0.818218 | 2.198685e-52 | -8.615850e-47 |
| Msa0652770 | Msa0692790 | 0.815071 | 1.115202e-51 | -8.615850e-47 |
| Msa0660370 | Msa0692790 | 0.811231 | 7.762704e-51 | -8.615850e-47 |
| Msa0662820 | Msa0692790 | 0.804095 | 2.546162e-49 | -8.615850e-47 |
| Msa0690740 | Msa0692790 | 0.808534 | 2.954121e-50 | -8.615850e-47 |
| Msa0692790 | Msa0700970 | 0.886421 | 3.471355e-72 | -8.615850e-47 |
| Msa0692790 | Msa0703600 | 0.803082 | 4.131397e-49 | -8.615850e-47 |
| Msa0692790 | Msa0703950 | 0.841236 | 5.369023e-58 | -8.615850e-47 |
| Msa0692790 | Msa0706760 | 0.823121 | 1.642757e-53 | -8.615850e-47 |
| Msa0692790 | Msa0709200 | 0.802942 | 4.415925e-49 | -8.615850e-47 |
| Msa0692790 | Msa0709440 | 0.801226 | 9.951519e-49 | -8.615850e-47 |
| Msa0692790 | Msa0716890 | 0.825572 | 4.358280e-54 | -8.615850e-47 |
| Msa0692790 | Msa0722890 | 0.801155 | 1.029123e-48 | -8.615850e-47 |
| Msa0692790 | Msa0723090 | 0.812640 | 3.829896e-51 | -8.615850e-47 |
| Msa0692790 | Msa0754430 | 0.815782 | 7.748941e-52 | -8.615850e-47 |
| Msa0692790 | Msa0754450 | 0.814695 | 1.351235e-51 | -8.615850e-47 |
| Msa0692790 | Msa0813160 | 0.801473 | 8.854964e-49 | -8.615850e-47 |
| Msa0692790 | Msa0837710 | 0.811849 | 5.699556e-51 | -8.615850e-47 |
| Msa0692790 | Msa0851850 | 0.837527 | 4.930764e-57 | -8.615850e-47 |
| Msa0692790 | Msa0880270 | 0.810877 | 9.261946e-51 | -8.615850e-47 |
| Msa0692790 | Msa0930770 | 0.842890 | 1.960973e-58 | -8.615850e-47 |
| Msa0692790 | Msa0945190 | 0.805600 | 1.234239e-49 | -8.615850e-47 |
| Msa0692790 | Msa0982650 | 0.806617 | 7.541891e-50 | -8.615850e-47 |
| Msa0692790 | Msa1013190 | 0.814932 | 1.197772e-51 | -8.615850e-47 |
| Msa0692790 | Msa1022420 | 0.826286 | 2.948805e-54 | -8.615850e-47 |
| Msa0692790 | Msa1031170 | 0.800039 | 1.737859e-48 | -8.615850e-47 |
| Msa0692790 | Msa1044250 | 0.811094 | 8.313333e-51 | -8.615850e-47 |
| Msa0692790 | Msa1072960 | 0.829379 | 5.320722e-55 | -8.615850e-47 |
| Msa0692790 | Msa1104110 | 0.846912 | 1.612175e-59 | -8.615850e-47 |
| Msa0692790 | Msa1106590 | 0.812142 | 4.919152e-51 | -8.615850e-47 |
| Msa0692790 | Msa1119440 | 0.807274 | 5.476242e-50 | -8.615850e-47 |
| Msa0692790 | Msa1123210 | 0.830150 | 3.453913e-55 | -8.615850e-47 |
| Msa0692790 | Msa1132530 | 0.802836 | 4.644145e-49 | -8.615850e-47 |
| Msa0692790 | Msa1145300 | 0.870436 | 1.461207e-66 | -8.615850e-47 |
| Msa0692790 | Msa1147700 | 0.867532 | 1.277293e-65 | -8.615850e-47 |
| Msa0692790 | Msa1160910 | 0.809853 | 1.540550e-50 | -8.615850e-47 |
| Msa0692790 | Msa1165090 | 0.844698 | 6.436339e-59 | -8.615850e-47 |
| Msa0692790 | Msa1169660 | 0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0692790 | Msa1171290 | 0.802644 | 5.086895e-49 | -8.615850e-47 |
| Msa0692790 | Msa1192560 | 0.827944 | 1.182238e-54 | -8.615850e-47 |
| Msa0692790 | Msa1192590 | 0.817176 | 3.776544e-52 | -8.615850e-47 |
| Msa0692790 | Msa1201780 | 0.805151 | 1.532944e-49 | -8.615850e-47 |
| Msa0692790 | Msa1207190 | 0.831529 | 1.585551e-55 | -8.615850e-47 |
| Msa0692790 | Msa1218820 | 0.808443 | 3.089997e-50 | -8.615850e-47 |
| Msa0692790 | Msa1256290 | 0.801796 | 7.603057e-49 | -8.615850e-47 |
| Msa0692790 | Msa1257440 | 0.836628 | 8.369740e-57 | -8.615850e-47 |
| Msa0692790 | Msa1262590 | 0.827040 | 1.948972e-54 | -8.615850e-47 |
| Msa0692790 | Msa1305250 | 0.841567 | 4.395108e-58 | -8.615850e-47 |
| Msa0692790 | Msa1306640 | 0.809080 | 2.257744e-50 | -8.615850e-47 |
| Msa0692790 | Msa1317630 | 0.837711 | 4.422905e-57 | -8.615850e-47 |
| Msa0692790 | Msa1347390 | 0.800521 | 1.386466e-48 | -8.615850e-47 |
| Msa0692790 | Msa1365820 | 0.810862 | 9.331976e-51 | -8.615850e-47 |
| Msa0692790 | Msa1368390 | 0.816423 | 5.573437e-52 | -8.615850e-47 |
| Msa0692790 | Msa1375280 | 0.811454 | 6.944227e-51 | -8.615850e-47 |
| Msa0692790 | Msa1383820 | 0.874336 | 7.311168e-68 | -8.615850e-47 |
| Msa0692790 | Msa1387440 | 0.804803 | 1.812508e-49 | -8.615850e-47 |
| Msa0692790 | Msa1407840 | 0.819200 | 1.315908e-52 | -8.615850e-47 |
| Msa0692790 | Msa1411790 | 0.800930 | 1.143698e-48 | -8.615850e-47 |
| Msa0692790 | Msa1412000 | 0.807120 | 5.901702e-50 | -8.615850e-47 |
| Msa0692790 | Msa1413620 | 0.832334 | 1.003321e-55 | -8.615850e-47 |
| Msa0692790 | Msa1427110 | 0.821457 | 3.997256e-53 | -8.615850e-47 |
| Msa0692790 | Msa1437810 | 0.817656 | 2.945140e-52 | -8.615850e-47 |
| Msa0692790 | Msa1441570 | 0.852482 | 4.483988e-61 | -8.615850e-47 |
| Msa0692790 | Msa1447100 | 0.816350 | 5.785964e-52 | -8.615850e-47 |
| Msa0692790 | Msa1449900 | 0.807947 | 3.940053e-50 | -8.615850e-47 |
| Msa0692790 | Msa1450520 | 0.801886 | 7.286140e-49 | -8.615850e-47 |
| Msa0692790 | Msa1453290 | 0.810864 | 9.324004e-51 | -8.615850e-47 |
| Msa0692790 | Msa1454500 | 0.809627 | 1.723632e-50 | -8.615850e-47 |
| Msa0123070 | Msa0692790 | 0.817251 | 3.633656e-52 | -8.615850e-47 |
| Msa0124910 | Msa0692790 | 0.833311 | 5.736792e-56 | -8.615850e-47 |
| Msa0125360 | Msa0692790 | 0.812982 | 3.223620e-51 | -8.615850e-47 |
| Msa0126210 | Msa0692790 | 0.812608 | 3.892103e-51 | -8.615850e-47 |
| Msa0127770 | Msa0692790 | 0.802443 | 5.597696e-49 | -8.615850e-47 |
| Msa0143590 | Msa0692790 | 0.807909 | 4.014841e-50 | -8.615850e-47 |
| Msa0161400 | Msa0692790 | 0.819311 | 1.241438e-52 | -8.615850e-47 |
| Msa0164290 | Msa0692790 | 0.811938 | 5.450793e-51 | -8.615850e-47 |
| Msa0168050 | Msa0692790 | 0.803416 | 3.522421e-49 | -8.615850e-47 |
| Msa0168480 | Msa0692790 | 0.822382 | 2.440433e-53 | -8.615850e-47 |
| Msa0169410 | Msa0692790 | 0.815284 | 1.000440e-51 | -8.615850e-47 |
| Msa0183710 | Msa0692790 | 0.825937 | 3.570406e-54 | -8.615850e-47 |
| Msa0184500 | Msa0692790 | 0.889075 | 3.351073e-73 | -8.615850e-47 |
| Msa0185290 | Msa0692790 | 0.808314 | 3.290753e-50 | -8.615850e-47 |
| Msa0195230 | Msa0692790 | 0.809877 | 1.522676e-50 | -8.615850e-47 |
| Msa0195260 | Msa0692790 | 0.805593 | 1.238646e-49 | -8.615850e-47 |
| Msa0203080 | Msa0692790 | 0.862209 | 5.958483e-64 | -8.615850e-47 |
| Msa0204950 | Msa0692790 | 0.810201 | 1.296610e-50 | -8.615850e-47 |
| Msa0209140 | Msa0692790 | 0.831954 | 1.245078e-55 | -8.615850e-47 |
| Msa0375640 | Msa0692790 | 0.815569 | 8.646198e-52 | -8.615850e-47 |
| Msa0385310 | Msa0692790 | 0.852741 | 3.784496e-61 | -8.615850e-47 |
| Msa0424160 | Msa0692790 | 0.820496 | 6.651030e-53 | -8.615850e-47 |
| Msa0430230 | Msa0692790 | 0.824481 | 7.886435e-54 | -8.615850e-47 |
| Msa0435570 | Msa0692790 | 0.832332 | 1.004042e-55 | -8.615850e-47 |
| Msa0437520 | Msa0692790 | 0.814699 | 1.349018e-51 | -8.615850e-47 |
| Msa0440350 | Msa0692790 | 0.804203 | 2.417917e-49 | -8.615850e-47 |
| Msa0440430 | Msa0692790 | 0.852892 | 3.426311e-61 | -8.615850e-47 |
| Msa0479420 | Msa0692790 | 0.852331 | 4.951252e-61 | -8.615850e-47 |
| Msa0481890 | Msa0692790 | 0.800752 | 1.243378e-48 | -8.615850e-47 |
| Msa0246210 | Msa0692790 | 0.854021 | 1.623899e-61 | -8.615850e-47 |
| Msa0249850 | Msa0692790 | 0.835898 | 1.283474e-56 | -8.615850e-47 |
| Msa0269210 | Msa0692790 | 0.809249 | 2.077511e-50 | -8.615850e-47 |
| Msa0276860 | Msa0692790 | 0.841094 | 5.851263e-58 | -8.615850e-47 |
| Msa0281470 | Msa0692790 | 0.813209 | 2.874344e-51 | -8.615850e-47 |
| Msa0284800 | Msa0692790 | 0.849636 | 2.847556e-60 | -8.615850e-47 |
| Msa0288620 | Msa0692790 | 0.829426 | 5.182903e-55 | -8.615850e-47 |
| Msa0307280 | Msa0692790 | 0.811576 | 6.532483e-51 | -8.615850e-47 |
| Msa0320600 | Msa0692790 | 0.806294 | 8.820188e-50 | -8.615850e-47 |
| Msa0326710 | Msa0692790 | 0.822930 | 1.819869e-53 | -8.615850e-47 |
| Msa0330520 | Msa0692790 | 0.870739 | 1.161750e-66 | -8.615850e-47 |
| Msa0495300 | Msa0692790 | 0.832118 | 1.134147e-55 | -8.615850e-47 |
| Msa0515800 | Msa0692790 | 0.803364 | 3.611474e-49 | -8.615850e-47 |
| Msa0518590 | Msa0692790 | 0.803376 | 3.590447e-49 | -8.615850e-47 |
| Msa0519760 | Msa0692790 | 0.823116 | 1.647338e-53 | -8.615850e-47 |
| Msa0519810 | Msa0692790 | 0.834732 | 2.528964e-56 | -8.615850e-47 |
| Msa0519840 | Msa0692790 | 0.829393 | 5.279660e-55 | -8.615850e-47 |
| Msa0523110 | Msa0692790 | 0.866816 | 2.161575e-65 | -8.615850e-47 |
| Msa0525880 | Msa0692790 | 0.817049 | 4.034165e-52 | -8.615850e-47 |
| Msa0574900 | Msa0692790 | 0.860787 | 1.618735e-63 | -8.615850e-47 |
| Msa0590630 | Msa0692790 | 0.841565 | 4.398469e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692790 | MtrunA17_Chr8g0378821 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Msa0692790 | MtrunA17_Chr7g0253411 | 94.989 | 439 | 22 | 0 | 1 | 439 | 1 | 439 | 0.0 | 857 |
| Msa0692790 | MtrunA17_Chr1g0206881 | 91.111 | 450 | 39 | 1 | 1 | 449 | 1 | 450 | 0.0 | 840 |
| Msa0692790 | MtrunA17_Chr4g0054511 | 92.711 | 439 | 32 | 0 | 1 | 439 | 1 | 439 | 0.0 | 839 |
| Msa0692790 | MtrunA17_Chr3g0140821 | 92.922 | 438 | 31 | 0 | 1 | 438 | 1 | 438 | 0.0 | 838 |
| Msa0692790 | MtrunA17_Chr6g0461281 | 87.333 | 450 | 54 | 2 | 1 | 449 | 1 | 448 | 0.0 | 799 |
| Msa0692790 | MtrunA17_Chr2g0300671 | 71.889 | 434 | 117 | 2 | 1 | 434 | 1 | 429 | 0.0 | 632 |
| Msa0692790 | MtrunA17_Chr2g0300491 | 71.429 | 434 | 119 | 2 | 1 | 434 | 1 | 429 | 0.0 | 632 |
| Msa0692790 | MtrunA17_Chr8g0393021 | 41.425 | 449 | 252 | 3 | 1 | 449 | 1 | 438 | 1.42e-126 | 374 |
| Msa0692790 | MtrunA17_Chr4g0051631 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 1.72e-126 | 374 |
| Msa0692790 | MtrunA17_Chr4g0008401 | 42.396 | 434 | 240 | 2 | 1 | 434 | 1 | 424 | 8.38e-126 | 372 |
| Msa0692790 | MtrunA17_Chr2g0292921 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 8.58e-126 | 372 |
| Msa0692790 | MtrunA17_Chr4g0008361 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 1.44e-125 | 372 |
| Msa0692790 | MtrunA17_Chr3g0142731 | 40.553 | 434 | 250 | 1 | 1 | 434 | 1 | 426 | 6.04e-125 | 370 |
| Msa0692790 | MtrunA17_Chr1g0203181 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 8.55e-125 | 370 |
| Msa0692790 | MtrunA17_Chr7g0255791 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 1.07e-124 | 369 |
| Msa0692790 | MtrunA17_Chr4g0007371 | 41.514 | 436 | 243 | 3 | 1 | 434 | 1 | 426 | 2.70e-124 | 369 |
| Msa0692790 | MtrunA17_Chr8g0386781 | 40.275 | 437 | 245 | 3 | 1 | 434 | 1 | 424 | 2.98e-124 | 368 |
| Msa0692790 | MtrunA17_Chr3g0109241 | 89.855 | 138 | 14 | 0 | 268 | 405 | 1 | 138 | 7.39e-91 | 272 |
| Msa0692790 | MtrunA17_Chr7g0275431 | 30.562 | 445 | 288 | 8 | 2 | 433 | 3 | 439 | 7.08e-77 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692790 | AT5G19780.1 | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Msa0692790 | AT5G19770.1 | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Msa0692790 | AT1G64740.1 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 836 |
| Msa0692790 | AT1G50010.1 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0692790 | AT1G04820.1 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0692790 | AT4G14960.2 | 92.644 | 435 | 32 | 0 | 1 | 435 | 1 | 435 | 0.0 | 832 |
| Msa0692790 | AT4G14960.1 | 87.961 | 407 | 42 | 1 | 1 | 407 | 1 | 400 | 0.0 | 733 |
| Msa0692790 | AT1G75780.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 7.44e-128 | 378 |
| Msa0692790 | AT5G62690.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 2.10e-126 | 374 |
| Msa0692790 | AT5G62700.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 2.10e-126 | 374 |
| Msa0692790 | AT1G20010.1 | 41.244 | 434 | 246 | 2 | 1 | 434 | 1 | 425 | 2.12e-125 | 372 |
| Msa0692790 | AT2G29550.1 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 2.17e-125 | 372 |
| Msa0692790 | AT5G12250.1 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 3.04e-125 | 371 |
| Msa0692790 | AT4G20890.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 5.47e-125 | 370 |
| Msa0692790 | AT5G23860.2 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.21e-124 | 370 |
| Msa0692790 | AT5G23860.1 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.21e-124 | 370 |
| Msa0692790 | AT5G44340.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 2.66e-123 | 366 |
| Msa0692790 | AT5G05620.1 | 31.236 | 445 | 285 | 8 | 2 | 433 | 3 | 439 | 4.59e-78 | 251 |
| Msa0692790 | AT3G61650.1 | 30.519 | 462 | 295 | 9 | 2 | 445 | 3 | 456 | 6.45e-77 | 248 |
Find 142 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACGTCTTTCTGTTGATTA+TGG | 0.176344 | 4_4:-61453691 | Msa0692790:CDS |
| AGGTTTGGGTTCACTTCTTT+TGG | 0.254943 | 4_4:-61453713 | Msa0692790:CDS |
| GGTGGAACCGGTTCAGGTTT+GGG | 0.262975 | 4_4:-61453727 | Msa0692790:CDS |
| CAGCCTCCTTCAGTTGTTCC+TGG | 0.319747 | 4_4:-61452637 | Msa0692790:CDS |
| TTGCCGGAGATGAGTTGTTC+AGG | 0.320827 | 4_4:+61453972 | None:intergenic |
| AACACAGCATTGGTAATTTC+CGG | 0.327913 | 4_4:+61453142 | None:intergenic |
| TGGTGGAACCGGTTCAGGTT+TGG | 0.328516 | 4_4:-61453728 | Msa0692790:CDS |
| AACACATTCTTCAGCGAAAC+TGG | 0.328754 | 4_4:-61454089 | Msa0692790:CDS |
| TTTGGATCGTGTTAGGAAAT+TGG | 0.329849 | 4_4:-61453800 | Msa0692790:CDS |
| GTATTAGTAGTAGTAAATTA+AGG | 0.333898 | 4_4:+61454468 | None:intergenic |
| GTTGGTGGTGGAACCGGTTC+AGG | 0.343909 | 4_4:-61453733 | Msa0692790:CDS |
| ACCACCTCGTTGAGGTTTGA+TGG | 0.345949 | 4_4:-61453292 | Msa0692790:CDS |
| ATCTGTGTTTGGATCGTGTT+AGG | 0.350514 | 4_4:-61453807 | Msa0692790:CDS |
| AGAATTACCGACTTGGATTC+CGG | 0.354165 | 4_4:+61454292 | None:intergenic |
| CACTGATGTGGCGGTGCTCT+TGG | 0.354267 | 4_4:-61453416 | Msa0692790:CDS |
| AACGCTGTTGGTGGTGGAAC+CGG | 0.370166 | 4_4:-61453739 | Msa0692790:CDS |
| TTCTTCAGCGAAACTGGTTC+CGG | 0.377933 | 4_4:-61454083 | Msa0692790:CDS |
| TCCAAGTCGGTAATTCTTGC+TGG | 0.386306 | 4_4:-61454286 | Msa0692790:CDS |
| ATGTCTTGAACTTATACAAT+AGG | 0.393095 | 4_4:+61452355 | None:intergenic |
| GTAGATGGTGAATCCAAGTT+TGG | 0.394713 | 4_4:+61453660 | None:intergenic |
| ACAGCAGCATTGACATCCTT+TGG | 0.397105 | 4_4:+61453034 | None:intergenic |
| CATCATTCAAACTTGTGAAA+TGG | 0.409499 | 4_4:-61452234 | Msa0692790:three_prime_UTR |
| GGAAATTGTAGATCTGTGTT+TGG | 0.411361 | 4_4:-61453818 | Msa0692790:CDS |
| GCCTTAGCAGCAGAGATAAC+AGG | 0.413078 | 4_4:+61453187 | None:intergenic |
| CCAGTGGACAAAGGCTCTCT+TGG | 0.425867 | 4_4:+61452510 | None:intergenic |
| AGGCGATCTATGACATTTGT+AGG | 0.426144 | 4_4:-61453387 | Msa0692790:CDS |
| GTTAGCGGCGTCTTCTTTGC+CGG | 0.427769 | 4_4:+61453956 | None:intergenic |
| GCCATATATTTCCCATGCCT+TGG | 0.429047 | 4_4:+61453088 | None:intergenic |
| CTAGGTTTCAACTGCTGTTG+TGG | 0.430726 | 4_4:-61453482 | Msa0692790:intron |
| CAACTTATACCAACTTGAAC+AGG | 0.431265 | 4_4:-61453342 | Msa0692790:CDS |
| TCCAAGGCATGGGAAATATA+TGG | 0.435927 | 4_4:-61453089 | Msa0692790:CDS |
| GGCGCGTGGAACGTGTTTGC+CGG | 0.438994 | 4_4:+61454064 | None:intergenic |
| ATGTATGACAGGTGCCCAAC+TGG | 0.444943 | 4_4:-61452682 | Msa0692790:intron |
| GATAACTGTACCGGTCTTCA+AGG | 0.448969 | 4_4:-61453775 | Msa0692790:CDS |
| GTCGGTGAGGGCATGGAAGA+AGG | 0.451862 | 4_4:-61452484 | Msa0692790:CDS |
| AAGTGAACCCAAACCTGAAC+CGG | 0.452878 | 4_4:+61453720 | None:intergenic |
| CATTTCACAAGTTTGAATGA+TGG | 0.459908 | 4_4:+61452235 | None:intergenic |
| TACCTGAGGGGAAGGGTAGA+TGG | 0.468178 | 4_4:+61453645 | None:intergenic |
| TGCCGGAGATGAGTTGTTCA+GGG | 0.468722 | 4_4:+61453973 | None:intergenic |
| CGAGAGCAGCAAGATCTTCA+CGG | 0.470136 | 4_4:+61452446 | None:intergenic |
| TCGGTGAGGGCATGGAAGAA+GGG | 0.478798 | 4_4:-61452483 | Msa0692790:CDS |
| AACCTAGGCATCATGCCGTC+AGG | 0.480667 | 4_4:+61454233 | None:intergenic |
| TATTACAGTGATTCCTCCGT+TGG | 0.488114 | 4_4:-61454131 | Msa0692790:intron |
| CCAAGAGAGCCTTTGTCCAC+TGG | 0.491892 | 4_4:-61452510 | Msa0692790:CDS |
| ACGAGGATACGGCACAAGAT+TGG | 0.495414 | 4_4:+61453237 | None:intergenic |
| ACCTGTTATCTCTGCTGCTA+AGG | 0.495705 | 4_4:-61453188 | Msa0692790:CDS |
| CACCATCTACCCTTCCCCTC+AGG | 0.496887 | 4_4:-61453647 | Msa0692790:intron |
| GTCATCGATGAAGTTCGTTC+CGG | 0.499563 | 4_4:-61454017 | Msa0692790:CDS |
| CTGGTATGTCGGTGAGGGCA+TGG | 0.501551 | 4_4:-61452491 | Msa0692790:CDS |
| GGAGCAGAAGATGATGAGGA+AGG | 0.503402 | 4_4:-61452394 | Msa0692790:CDS |
| CTGTTCAAGTTGGTATAAGT+TGG | 0.510056 | 4_4:+61453343 | None:intergenic |
| AATGAAAATGAGAAATGAGA+AGG | 0.513486 | 4_4:+61454417 | None:intergenic |
| CACCCTGAACAACTCATCTC+CGG | 0.515494 | 4_4:-61453975 | Msa0692790:CDS |
| ATGAAAATGAGAAATGAGAA+GGG | 0.518271 | 4_4:+61454418 | None:intergenic |
| TACCACATTTGAAACCAGTT+GGG | 0.518530 | 4_4:+61452668 | None:intergenic |
| ATCGAACTTGTGATCAATGC+GGG | 0.523345 | 4_4:+61452543 | None:intergenic |
| GAGAAAGATTATGAAGAAGT+TGG | 0.523429 | 4_4:-61452424 | Msa0692790:CDS |
| GTTCAGGGTGGAAGAGTTGT+CGG | 0.523884 | 4_4:+61453988 | None:intergenic |
| CCCAGCAAGAATTACCGACT+TGG | 0.525270 | 4_4:+61454285 | None:intergenic |
| GGACTGTTCAGTTTGTTGAC+TGG | 0.529278 | 4_4:-61452991 | Msa0692790:intron |
| TCCTGGCGGTGACCTTGCTA+AGG | 0.530128 | 4_4:-61452620 | Msa0692790:CDS |
| GAAGAGTTGTCGGTAGGTAC+CGG | 0.530553 | 4_4:+61453998 | None:intergenic |
| AGAAGATGATGAGGAAGGAG+AGG | 0.532591 | 4_4:-61452389 | Msa0692790:CDS |
| TTATGAAGAAGTTGGTGCTG+AGG | 0.534554 | 4_4:-61452416 | Msa0692790:CDS |
| GAATGTTGTACCTGAGGGGA+AGG | 0.534693 | 4_4:+61453637 | None:intergenic |
| CAGTAACAACACTGCTGTTG+CGG | 0.536971 | 4_4:-61452575 | Msa0692790:CDS |
| GTCCACTGGTATGTCGGTGA+GGG | 0.540123 | 4_4:-61452496 | Msa0692790:CDS |
| CACTTAGCCATCATACTAGC+AGG | 0.541426 | 4_4:+61453115 | None:intergenic |
| GATACGGCACAAGATTGGTC+TGG | 0.542354 | 4_4:+61453242 | None:intergenic |
| TCATGAGCAGCTATCTGTGC+CGG | 0.543119 | 4_4:-61453161 | Msa0692790:CDS |
| TATGGAAAGAAATCCAAACT+TGG | 0.546100 | 4_4:-61453673 | Msa0692790:CDS |
| TATGAAGAAGTTGGTGCTGA+GGG | 0.548545 | 4_4:-61452415 | Msa0692790:CDS |
| ATACCACATTTGAAACCAGT+TGG | 0.549643 | 4_4:+61452667 | None:intergenic |
| TTGCGTACGCGTACTGCAAG+AGG | 0.551623 | 4_4:+61451938 | None:intergenic |
| TTTAGATAGTCAGGAAGTCA+AGG | 0.553844 | 4_4:-61451984 | Msa0692790:three_prime_UTR |
| AGAGGCAATAAATTCAGTGT+TGG | 0.555343 | 4_4:+61451956 | None:intergenic |
| ACCCTTTATTTGGGAAACAA+AGG | 0.558060 | 4_4:-61452031 | Msa0692790:intron |
| CGGTGAGGGCATGGAAGAAG+GGG | 0.558712 | 4_4:-61452482 | Msa0692790:CDS |
| TCTTCTTGAGCACACTGATG+TGG | 0.559183 | 4_4:-61453428 | Msa0692790:CDS |
| GAGAGCAGCAAGATCTTCAC+GGG | 0.561278 | 4_4:+61452447 | None:intergenic |
| AGTATTCACATCGGTCAAGC+CGG | 0.564094 | 4_4:-61454311 | Msa0692790:CDS |
| ACCTTAGCAAGGTCACCGCC+AGG | 0.564664 | 4_4:+61452619 | None:intergenic |
| TAAAAGAACAATACGAGTGG+AGG | 0.565884 | 4_4:+61452277 | None:intergenic |
| CCAAGTCGGTAATTCTTGCT+GGG | 0.565989 | 4_4:-61454285 | Msa0692790:CDS |
| GCCTTTGTCCACTGGTATGT+CGG | 0.567211 | 4_4:-61452502 | Msa0692790:CDS |
| ATGAAATGAATACGAGGATA+CGG | 0.568430 | 4_4:+61453226 | None:intergenic |
| TCCTCTAGCGAAATTGTTAG+CGG | 0.568659 | 4_4:+61453941 | None:intergenic |
| AAACCTCAACGAGGTGGTGA+GGG | 0.569782 | 4_4:+61453297 | None:intergenic |
| GTCGATAGAACACTGTTGTA+TGG | 0.573851 | 4_4:+61453457 | None:intergenic |
| GCTAAGTGTGATCCAAGGCA+TGG | 0.576706 | 4_4:-61453100 | Msa0692790:CDS |
| TGATATCAACCTGTTCAAGT+TGG | 0.577755 | 4_4:+61453333 | None:intergenic |
| GTTTGAGCCTGCTAGTATGA+TGG | 0.579221 | 4_4:-61453122 | Msa0692790:CDS |
| TGAGGGAGCAGAAGATGATG+AGG | 0.580692 | 4_4:-61452398 | Msa0692790:CDS |
| CAGCTCTTTGCACCTTAGCA+AGG | 0.580894 | 4_4:+61452608 | None:intergenic |
| AGCCTGACGGCATGATGCCT+AGG | 0.582568 | 4_4:-61454235 | Msa0692790:intron |
| ATAACTGTACCGGTCTTCAA+GGG | 0.586323 | 4_4:-61453774 | Msa0692790:CDS |
| AAATTGGCTGATAACTGTAC+CGG | 0.586586 | 4_4:-61453784 | Msa0692790:CDS |
| TGCCCAACTGGTTTCAAATG+TGG | 0.589673 | 4_4:-61452670 | Msa0692790:CDS |
| AGCAGGCTCAAACACAGCAT+TGG | 0.589885 | 4_4:+61453132 | None:intergenic |
| CAAACCTCAACGAGGTGGTG+AGG | 0.590642 | 4_4:+61453296 | None:intergenic |
| GAGCTTTACTGTCTCGAACA+TGG | 0.594726 | 4_4:-61454263 | Msa0692790:CDS |
| TGTCCACTGGTATGTCGGTG+AGG | 0.595519 | 4_4:-61452497 | Msa0692790:CDS |
| AAAAGAACAATACGAGTGGA+GGG | 0.596182 | 4_4:+61452278 | None:intergenic |
| GGCGGTGCTCTTGGATAATG+AGG | 0.598449 | 4_4:-61453407 | Msa0692790:CDS |
| AGATCTACGAAGACGGCGCG+TGG | 0.600243 | 4_4:+61454050 | None:intergenic |
| TCACCGCCAGGAACAACTGA+AGG | 0.606748 | 4_4:+61452631 | None:intergenic |
| GGAGATCTCTTGATATTGAG+AGG | 0.607664 | 4_4:-61453366 | Msa0692790:CDS |
| CCGTGGTGATGTTGTTCCAA+AGG | 0.608496 | 4_4:-61453050 | Msa0692790:CDS |
| TGCATCGTGTGCTACTCCAA+CGG | 0.608526 | 4_4:+61454115 | None:intergenic |
| AATGTTGTACCTGAGGGGAA+GGG | 0.614483 | 4_4:+61453638 | None:intergenic |
| GCCGCTAACAATTTCGCTAG+AGG | 0.616891 | 4_4:-61453942 | Msa0692790:CDS |
| CTAAGTGTGATCCAAGGCAT+GGG | 0.617321 | 4_4:-61453099 | Msa0692790:CDS |
| CATCCCTCACCACCTCGTTG+AGG | 0.618692 | 4_4:-61453300 | Msa0692790:CDS |
| TGCCCTCACCGACATACCAG+TGG | 0.624103 | 4_4:+61452494 | None:intergenic |
| TAACAACACTGCTGTTGCGG+AGG | 0.625191 | 4_4:-61452572 | Msa0692790:CDS |
| TTCGCTAGAGGACACTACAC+TGG | 0.625494 | 4_4:-61453930 | Msa0692790:intron |
| AAGGATGTCAATGCTGCTGT+TGG | 0.630667 | 4_4:-61453031 | Msa0692790:CDS |
| GGAACGAACTTCATCGATGA+CGG | 0.631624 | 4_4:+61454019 | None:intergenic |
| GGTCAAGCCGGAATCCAAGT+CGG | 0.631989 | 4_4:-61454299 | Msa0692790:CDS |
| GGGTTCGAGATCTACGAAGA+CGG | 0.637629 | 4_4:+61454043 | None:intergenic |
| CGAACTTCATCGATGACGGT+GGG | 0.641237 | 4_4:+61454023 | None:intergenic |
| ACGAACTTCATCGATGACGG+TGG | 0.644676 | 4_4:+61454022 | None:intergenic |
| TCTTGAGCACACTGATGTGG+CGG | 0.645120 | 4_4:-61453425 | Msa0692790:CDS |
| ATGATGGAACTATATCACAC+TGG | 0.656762 | 4_4:+61452251 | None:intergenic |
| AGGGTGGAAGAGTTGTCGGT+AGG | 0.660011 | 4_4:+61453992 | None:intergenic |
| ATCGTGTGCTACTCCAACGG+AGG | 0.660419 | 4_4:+61454118 | None:intergenic |
| TGATGGCTAAGTGTGATCCA+AGG | 0.660907 | 4_4:-61453105 | Msa0692790:CDS |
| CCTCCTTCAGTTGTTCCTGG+CGG | 0.661195 | 4_4:-61452634 | Msa0692790:CDS |
| AAATAAAAGAACAATACGAG+TGG | 0.663738 | 4_4:+61452274 | None:intergenic |
| GAACATGGCATTCAGCCTGA+CGG | 0.664223 | 4_4:-61454248 | Msa0692790:CDS |
| CCGCCAGGAACAACTGAAGG+AGG | 0.665389 | 4_4:+61452634 | None:intergenic |
| TTGGCACCATCAAAACAAAG+AGG | 0.672011 | 4_4:-61453012 | Msa0692790:CDS |
| ACCGACATACCAGTGGACAA+AGG | 0.672853 | 4_4:+61452501 | None:intergenic |
| ACCATCAAACCTCAACGAGG+TGG | 0.684702 | 4_4:+61453291 | None:intergenic |
| GAAATTATCAGTATTCACAT+CGG | 0.684879 | 4_4:-61454320 | Msa0692790:CDS |
| CGGAGATGAGTTGTTCAGGG+TGG | 0.684993 | 4_4:+61453976 | None:intergenic |
| GCTTGCTGTTTGATGTACCG+TGG | 0.703831 | 4_4:-61453067 | Msa0692790:CDS |
| TCTTGAATGTTGTACCTGAG+GGG | 0.708772 | 4_4:+61453633 | None:intergenic |
| GATCGAACTTGTGATCAATG+CGG | 0.718228 | 4_4:+61452542 | None:intergenic |
| GAAAGCATGAAATGAATACG+AGG | 0.732987 | 4_4:+61453220 | None:intergenic |
| CCTTTGGAACAACATCACCA+CGG | 0.768666 | 4_4:+61453050 | None:intergenic |
| AGCACCATCAAACCTCAACG+AGG | 0.774284 | 4_4:+61453288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACTTTAGGTTAAAAAA+AGG | + | chr4_4:61452221-61452240 | None:intergenic | 15.0% |
| !! | TGATGAATTAAAAAAACTTT+AGG | + | chr4_4:61452232-61452251 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTCTTTTTTTTG+TGG | - | chr4_4:61452560-61452579 | Msa0692790:CDS | 15.0% |
| !! | GTATTAGTAGTAGTAAATTA+AGG | + | chr4_4:61451948-61451967 | None:intergenic | 20.0% |
| !! | AAAATGAAATTAACTAACCT+AGG | + | chr4_4:61452198-61452217 | None:intergenic | 20.0% |
| !! | AATCATGTTGATGTAAATAT+TGG | - | chr4_4:61452836-61452855 | Msa0692790:intron | 20.0% |
| !!! | TAATGGTGAATTGTTATTTT+TGG | - | chr4_4:61452906-61452925 | Msa0692790:intron | 20.0% |
| !! | AATAACTATTTGTAGAATGA+CGG | - | chr4_4:61453458-61453477 | Msa0692790:CDS | 20.0% |
| !!! | TTTTATAAGGGTAGATAATT+TGG | - | chr4_4:61453534-61453553 | Msa0692790:intron | 20.0% |
| !! | TTCATATTATAATGTATGAC+AGG | - | chr4_4:61453720-61453739 | Msa0692790:CDS | 20.0% |
| ! | ATGAAAATGAGAAATGAGAA+GGG | + | chr4_4:61451998-61452017 | None:intergenic | 25.0% |
| ! | AATGAAAATGAGAAATGAGA+AGG | + | chr4_4:61451999-61452018 | None:intergenic | 25.0% |
| !!! | ATTTTAGAAAGAAGAAGAAG+TGG | + | chr4_4:61452041-61452060 | None:intergenic | 25.0% |
| ! | GAAATTATCAGTATTCACAT+CGG | - | chr4_4:61452093-61452112 | Msa0692790:intron | 25.0% |
| !!! | ATTGGTTTTTCTGTTTGTAA+TGG | - | chr4_4:61452889-61452908 | Msa0692790:intron | 25.0% |
| !!! | GAATTGTTATTTTTGGATCT+AGG | - | chr4_4:61452913-61452932 | Msa0692790:intron | 25.0% |
| ! | ATGTCTTGAACTTATACAAT+AGG | + | chr4_4:61454061-61454080 | None:intergenic | 25.0% |
| ! | AAATAAAAGAACAATACGAG+TGG | + | chr4_4:61454142-61454161 | None:intergenic | 25.0% |
| ! | AATCAAAACGAAAATGTTGT+CGG | + | chr4_4:61454318-61454337 | None:intergenic | 25.0% |
| ! | TATTAACAGTATACAGTATG+CGG | - | chr4_4:61454345-61454364 | Msa0692790:exon | 25.0% |
| !!! | TTTTTTAGCAACCCTTTATT+TGG | - | chr4_4:61454372-61454391 | Msa0692790:five_prime_UTR | 25.0% |
| !!! | TTTTTAGCAACCCTTTATTT+GGG | - | chr4_4:61454373-61454392 | Msa0692790:five_prime_UTR | 25.0% |
| ! | CTATCTAAACAAAAACAAAC+TGG | + | chr4_4:61454418-61454437 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTTTAGATAGTC+AGG | - | chr4_4:61454420-61454439 | Msa0692790:five_prime_UTR | 25.0% |
| AAATCTCGAAATTAGGGTTA+GGG | + | chr4_4:61452526-61452545 | None:intergenic | 30.0% | |
| AGCAAGAAATCTCGAAATTA+GGG | + | chr4_4:61452532-61452551 | None:intergenic | 30.0% | |
| AAGCAAGAAATCTCGAAATT+AGG | + | chr4_4:61452533-61452552 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTTGTGGTTCAGT+TGG | - | chr4_4:61452569-61452588 | Msa0692790:CDS | 30.0% |
| TATGGAAAGAAATCCAAACT+TGG | - | chr4_4:61452740-61452759 | Msa0692790:intron | 30.0% | |
| GATTGATGTATAGATCATAG+TGG | - | chr4_4:61452863-61452882 | Msa0692790:intron | 30.0% | |
| ATGAAATGAATACGAGGATA+CGG | + | chr4_4:61453190-61453209 | None:intergenic | 30.0% | |
| CCTTATAAAATATGCAGCTA+CGG | + | chr4_4:61453524-61453543 | None:intergenic | 30.0% | |
| ! | CGTAGCTGCATATTTTATAA+GGG | - | chr4_4:61453522-61453541 | Msa0692790:intron | 30.0% |
| !! | ACAATTCACAACTTGTTACT+AGG | - | chr4_4:61453641-61453660 | Msa0692790:intron | 30.0% |
| GAGAAAGATTATGAAGAAGT+TGG | - | chr4_4:61453989-61454008 | Msa0692790:CDS | 30.0% | |
| TGATTGTTTCAAGCAAAAAG+AGG | - | chr4_4:61454093-61454112 | Msa0692790:CDS | 30.0% | |
| GATTGTTTCAAGCAAAAAGA+GGG | - | chr4_4:61454094-61454113 | Msa0692790:CDS | 30.0% | |
| CATTTCACAAGTTTGAATGA+TGG | + | chr4_4:61454181-61454200 | None:intergenic | 30.0% | |
| CATCATTCAAACTTGTGAAA+TGG | - | chr4_4:61454179-61454198 | Msa0692790:intron | 30.0% | |
| !! | TATGCGTCTAATTTTGTTGT+AGG | - | chr4_4:61454209-61454228 | Msa0692790:intron | 30.0% |
| ! | ACCTTTGTTTCCCAAATAAA+GGG | + | chr4_4:61454386-61454405 | None:intergenic | 30.0% |
| GAAATCTCGAAATTAGGGTT+AGG | + | chr4_4:61452527-61452546 | None:intergenic | 35.0% | |
| GGAAATTGTAGATCTGTGTT+TGG | - | chr4_4:61452595-61452614 | Msa0692790:CDS | 35.0% | |
| TTTGGATCGTGTTAGGAAAT+TGG | - | chr4_4:61452613-61452632 | Msa0692790:CDS | 35.0% | |
| AAATTGGCTGATAACTGTAC+CGG | - | chr4_4:61452629-61452648 | Msa0692790:CDS | 35.0% | |
| !!! | TTTTTGGTTTTCAACGCTGT+TGG | - | chr4_4:61452662-61452681 | Msa0692790:CDS | 35.0% |
| ! | GAACGTCTTTCTGTTGATTA+TGG | - | chr4_4:61452722-61452741 | Msa0692790:intron | 35.0% |
| ATCTTGAATGTTGTACCTGA+GGG | + | chr4_4:61452784-61452803 | None:intergenic | 35.0% | |
| TGATGTATAGATCATAGTGG+TGG | - | chr4_4:61452866-61452885 | Msa0692790:intron | 35.0% | |
| !! | TATAGATCATAGTGGTGGAT+TGG | - | chr4_4:61452871-61452890 | Msa0692790:intron | 35.0% |
| !! | CTGTTCAAGTTGGTATAAGT+TGG | + | chr4_4:61453073-61453092 | None:intergenic | 35.0% |
| CAACTTATACCAACTTGAAC+AGG | - | chr4_4:61453071-61453090 | Msa0692790:CDS | 35.0% | |
| TGATATCAACCTGTTCAAGT+TGG | + | chr4_4:61453083-61453102 | None:intergenic | 35.0% | |
| ! | GAAAGCATGAAATGAATACG+AGG | + | chr4_4:61453196-61453215 | None:intergenic | 35.0% |
| !! | AACACAGCATTGGTAATTTC+CGG | + | chr4_4:61453274-61453293 | None:intergenic | 35.0% |
| !!! | AACAGTCCTCTTTGTTTTGA+TGG | + | chr4_4:61453410-61453429 | None:intergenic | 35.0% |
| ! | CCGTAGCTGCATATTTTATA+AGG | - | chr4_4:61453521-61453540 | Msa0692790:intron | 35.0% |
| TACTAGGACTTAATGTGATC+TGG | - | chr4_4:61453657-61453676 | Msa0692790:CDS | 35.0% | |
| ACTAGGACTTAATGTGATCT+GGG | - | chr4_4:61453658-61453677 | Msa0692790:CDS | 35.0% | |
| TGGGCTACTAATTTCTCTTA+TGG | - | chr4_4:61453677-61453696 | Msa0692790:CDS | 35.0% | |
| ! | TACCACATTTGAAACCAGTT+GGG | + | chr4_4:61453748-61453767 | None:intergenic | 35.0% |
| ! | ATACCACATTTGAAACCAGT+TGG | + | chr4_4:61453749-61453768 | None:intergenic | 35.0% |
| AAAAGAACAATACGAGTGGA+GGG | + | chr4_4:61454138-61454157 | None:intergenic | 35.0% | |
| TAAAAGAACAATACGAGTGG+AGG | + | chr4_4:61454139-61454158 | None:intergenic | 35.0% | |
| ! | ATGATGGAACTATATCACAC+TGG | + | chr4_4:61454165-61454184 | None:intergenic | 35.0% |
| ! | ACCCTTTATTTGGGAAACAA+AGG | - | chr4_4:61454382-61454401 | Msa0692790:five_prime_UTR | 35.0% |
| ! | GACCTTTGTTTCCCAAATAA+AGG | + | chr4_4:61454387-61454406 | None:intergenic | 35.0% |
| TTTAGATAGTCAGGAAGTCA+AGG | - | chr4_4:61454429-61454448 | Msa0692790:five_prime_UTR | 35.0% | |
| AGAGGCAATAAATTCAGTGT+TGG | + | chr4_4:61454460-61454479 | None:intergenic | 35.0% | |
| !! | AGAATTACCGACTTGGATTC+CGG | + | chr4_4:61452124-61452143 | None:intergenic | 40.0% |
| TATTACAGTGATTCCTCCGT+TGG | - | chr4_4:61452282-61452301 | Msa0692790:three_prime_UTR | 40.0% | |
| AACACATTCTTCAGCGAAAC+TGG | - | chr4_4:61452324-61452343 | Msa0692790:three_prime_UTR | 40.0% | |
| TCCTCTAGCGAAATTGTTAG+CGG | + | chr4_4:61452475-61452494 | None:intergenic | 40.0% | |
| ! | TTTTTGTGGTTCAGTTGGCA+AGG | - | chr4_4:61452574-61452593 | Msa0692790:CDS | 40.0% |
| ATCTGTGTTTGGATCGTGTT+AGG | - | chr4_4:61452606-61452625 | Msa0692790:CDS | 40.0% | |
| ! | ATAACTGTACCGGTCTTCAA+GGG | - | chr4_4:61452639-61452658 | Msa0692790:CDS | 40.0% |
| AACCAAAAACCCTTGAAGAC+CGG | + | chr4_4:61452651-61452670 | None:intergenic | 40.0% | |
| !! | AGGTTTGGGTTCACTTCTTT+TGG | - | chr4_4:61452700-61452719 | Msa0692790:intron | 40.0% |
| GTAGATGGTGAATCCAAGTT+TGG | + | chr4_4:61452756-61452775 | None:intergenic | 40.0% | |
| TCTTGAATGTTGTACCTGAG+GGG | + | chr4_4:61452783-61452802 | None:intergenic | 40.0% | |
| GATCTTGAATGTTGTACCTG+AGG | + | chr4_4:61452785-61452804 | None:intergenic | 40.0% | |
| GTCGATAGAACACTGTTGTA+TGG | + | chr4_4:61452959-61452978 | None:intergenic | 40.0% | |
| AGGCGATCTATGACATTTGT+AGG | - | chr4_4:61453026-61453045 | Msa0692790:CDS | 40.0% | |
| GGAGATCTCTTGATATTGAG+AGG | - | chr4_4:61453047-61453066 | Msa0692790:CDS | 40.0% | |
| TCCAAGGCATGGGAAATATA+TGG | - | chr4_4:61453324-61453343 | Msa0692790:CDS | 40.0% | |
| TTGGCACCATCAAAACAAAG+AGG | - | chr4_4:61453401-61453420 | Msa0692790:CDS | 40.0% | |
| ATCGAACTTGTGATCAATGC+GGG | + | chr4_4:61453873-61453892 | None:intergenic | 40.0% | |
| GATCGAACTTGTGATCAATG+CGG | + | chr4_4:61453874-61453893 | None:intergenic | 40.0% | |
| !! | TTATGAAGAAGTTGGTGCTG+AGG | - | chr4_4:61453997-61454016 | Msa0692790:CDS | 40.0% |
| !! | TATGAAGAAGTTGGTGCTGA+GGG | - | chr4_4:61453998-61454017 | Msa0692790:CDS | 40.0% |
| AGTATTCACATCGGTCAAGC+CGG | - | chr4_4:61452102-61452121 | Msa0692790:intron | 45.0% | |
| TCCAAGTCGGTAATTCTTGC+TGG | - | chr4_4:61452127-61452146 | Msa0692790:intron | 45.0% | |
| CCAAGTCGGTAATTCTTGCT+GGG | - | chr4_4:61452128-61452147 | Msa0692790:intron | 45.0% | |
| GAGCTTTACTGTCTCGAACA+TGG | - | chr4_4:61452150-61452169 | Msa0692790:three_prime_UTR | 45.0% | |
| ! | TTCTTCAGCGAAACTGGTTC+CGG | - | chr4_4:61452330-61452349 | Msa0692790:three_prime_UTR | 45.0% |
| GGAACGAACTTCATCGATGA+CGG | + | chr4_4:61452397-61452416 | None:intergenic | 45.0% | |
| GTCATCGATGAAGTTCGTTC+CGG | - | chr4_4:61452396-61452415 | Msa0692790:CDS | 45.0% | |
| ! | GATAACTGTACCGGTCTTCA+AGG | - | chr4_4:61452638-61452657 | Msa0692790:CDS | 45.0% |
| ! | TACCGGTCTTCAAGGGTTTT+TGG | - | chr4_4:61452646-61452665 | Msa0692790:CDS | 45.0% |
| !! | TTGGTTTTCAACGCTGTTGG+TGG | - | chr4_4:61452665-61452684 | Msa0692790:CDS | 45.0% |
| AAGTGAACCCAAACCTGAAC+CGG | + | chr4_4:61452696-61452715 | None:intergenic | 45.0% | |
| AATGTTGTACCTGAGGGGAA+GGG | + | chr4_4:61452778-61452797 | None:intergenic | 45.0% | |
| CTAGGTTTCAACTGCTGTTG+TGG | - | chr4_4:61452931-61452950 | Msa0692790:intron | 45.0% | |
| TCTTCTTGAGCACACTGATG+TGG | - | chr4_4:61452985-61453004 | Msa0692790:intron | 45.0% | |
| ACCTGTTATCTCTGCTGCTA+AGG | - | chr4_4:61453225-61453244 | Msa0692790:CDS | 45.0% | |
| GTTTGAGCCTGCTAGTATGA+TGG | - | chr4_4:61453291-61453310 | Msa0692790:CDS | 45.0% | |
| CACTTAGCCATCATACTAGC+AGG | + | chr4_4:61453301-61453320 | None:intergenic | 45.0% | |
| TGATGGCTAAGTGTGATCCA+AGG | - | chr4_4:61453308-61453327 | Msa0692790:CDS | 45.0% | |
| CTAAGTGTGATCCAAGGCAT+GGG | - | chr4_4:61453314-61453333 | Msa0692790:CDS | 45.0% | |
| GCCATATATTTCCCATGCCT+TGG | + | chr4_4:61453328-61453347 | None:intergenic | 45.0% | |
| !! | CCTTTGGAACAACATCACCA+CGG | + | chr4_4:61453366-61453385 | None:intergenic | 45.0% |
| !! | ACAGCAGCATTGACATCCTT+TGG | + | chr4_4:61453382-61453401 | None:intergenic | 45.0% |
| AAGGATGTCAATGCTGCTGT+TGG | - | chr4_4:61453382-61453401 | Msa0692790:CDS | 45.0% | |
| !! | GGACTGTTCAGTTTGTTGAC+TGG | - | chr4_4:61453422-61453441 | Msa0692790:CDS | 45.0% |
| ! | TGCCCAACTGGTTTCAAATG+TGG | - | chr4_4:61453743-61453762 | Msa0692790:CDS | 45.0% |
| CAGTAACAACACTGCTGTTG+CGG | - | chr4_4:61453838-61453857 | Msa0692790:intron | 45.0% | |
| AGAAGATGATGAGGAAGGAG+AGG | - | chr4_4:61454024-61454043 | Msa0692790:CDS | 45.0% | |
| ATGTTGTCGGAACAGACAGT+AGG | + | chr4_4:61454305-61454324 | None:intergenic | 45.0% | |
| ! | CCCAGCAAGAATTACCGACT+TGG | + | chr4_4:61452131-61452150 | None:intergenic | 50.0% |
| GAACATGGCATTCAGCCTGA+CGG | - | chr4_4:61452165-61452184 | Msa0692790:three_prime_UTR | 50.0% | |
| ! | TGCATCGTGTGCTACTCCAA+CGG | + | chr4_4:61452301-61452320 | None:intergenic | 50.0% |
| GGGTTCGAGATCTACGAAGA+CGG | + | chr4_4:61452373-61452392 | None:intergenic | 50.0% | |
| ! | CGAACTTCATCGATGACGGT+GGG | + | chr4_4:61452393-61452412 | None:intergenic | 50.0% |
| ! | ACGAACTTCATCGATGACGG+TGG | + | chr4_4:61452394-61452413 | None:intergenic | 50.0% |
| GAAGAGTTGTCGGTAGGTAC+CGG | + | chr4_4:61452418-61452437 | None:intergenic | 50.0% | |
| GTTCAGGGTGGAAGAGTTGT+CGG | + | chr4_4:61452428-61452447 | None:intergenic | 50.0% | |
| CACCCTGAACAACTCATCTC+CGG | - | chr4_4:61452438-61452457 | Msa0692790:CDS | 50.0% | |
| TGCCGGAGATGAGTTGTTCA+GGG | + | chr4_4:61452443-61452462 | None:intergenic | 50.0% | |
| TTGCCGGAGATGAGTTGTTC+AGG | + | chr4_4:61452444-61452463 | None:intergenic | 50.0% | |
| GCCGCTAACAATTTCGCTAG+AGG | - | chr4_4:61452471-61452490 | Msa0692790:CDS | 50.0% | |
| TTCGCTAGAGGACACTACAC+TGG | - | chr4_4:61452483-61452502 | Msa0692790:CDS | 50.0% | |
| !! | GTTTTCAACGCTGTTGGTGG+TGG | - | chr4_4:61452668-61452687 | Msa0692790:CDS | 50.0% |
| GAATGTTGTACCTGAGGGGA+AGG | + | chr4_4:61452779-61452798 | None:intergenic | 50.0% | |
| TCTTGAGCACACTGATGTGG+CGG | - | chr4_4:61452988-61453007 | Msa0692790:intron | 50.0% | |
| AAACCTCAACGAGGTGGTGA+GGG | + | chr4_4:61453119-61453138 | None:intergenic | 50.0% | |
| ACCACCTCGTTGAGGTTTGA+TGG | - | chr4_4:61453121-61453140 | Msa0692790:CDS | 50.0% | |
| ACCATCAAACCTCAACGAGG+TGG | + | chr4_4:61453125-61453144 | None:intergenic | 50.0% | |
| AGCACCATCAAACCTCAACG+AGG | + | chr4_4:61453128-61453147 | None:intergenic | 50.0% | |
| ! | GATACGGCACAAGATTGGTC+TGG | + | chr4_4:61453174-61453193 | None:intergenic | 50.0% |
| ACGAGGATACGGCACAAGAT+TGG | + | chr4_4:61453179-61453198 | None:intergenic | 50.0% | |
| GCCTTAGCAGCAGAGATAAC+AGG | + | chr4_4:61453229-61453248 | None:intergenic | 50.0% | |
| TCATGAGCAGCTATCTGTGC+CGG | - | chr4_4:61453252-61453271 | Msa0692790:CDS | 50.0% | |
| AGCAGGCTCAAACACAGCAT+TGG | + | chr4_4:61453284-61453303 | None:intergenic | 50.0% | |
| GCTAAGTGTGATCCAAGGCA+TGG | - | chr4_4:61453313-61453332 | Msa0692790:CDS | 50.0% | |
| !! | GCTTGCTGTTTGATGTACCG+TGG | - | chr4_4:61453346-61453365 | Msa0692790:CDS | 50.0% |
| ! | CCGTGGTGATGTTGTTCCAA+AGG | - | chr4_4:61453363-61453382 | Msa0692790:CDS | 50.0% |
| ATGTATGACAGGTGCCCAAC+TGG | - | chr4_4:61453731-61453750 | Msa0692790:CDS | 50.0% | |
| CAGCTCTTTGCACCTTAGCA+AGG | + | chr4_4:61453808-61453827 | None:intergenic | 50.0% | |
| TAACAACACTGCTGTTGCGG+AGG | - | chr4_4:61453841-61453860 | Msa0692790:intron | 50.0% | |
| GCCTTTGTCCACTGGTATGT+CGG | - | chr4_4:61453911-61453930 | Msa0692790:intron | 50.0% | |
| ACCGACATACCAGTGGACAA+AGG | + | chr4_4:61453915-61453934 | None:intergenic | 50.0% | |
| GAGAGCAGCAAGATCTTCAC+GGG | + | chr4_4:61453969-61453988 | None:intergenic | 50.0% | |
| CGAGAGCAGCAAGATCTTCA+CGG | + | chr4_4:61453970-61453989 | None:intergenic | 50.0% | |
| TGAGGGAGCAGAAGATGATG+AGG | - | chr4_4:61454015-61454034 | Msa0692790:CDS | 50.0% | |
| GGAGCAGAAGATGATGAGGA+AGG | - | chr4_4:61454019-61454038 | Msa0692790:CDS | 50.0% | |
| GGTCAAGCCGGAATCCAAGT+CGG | - | chr4_4:61452114-61452133 | Msa0692790:intron | 55.0% | |
| AACCTAGGCATCATGCCGTC+AGG | + | chr4_4:61452183-61452202 | None:intergenic | 55.0% | |
| ! | ATCGTGTGCTACTCCAACGG+AGG | + | chr4_4:61452298-61452317 | None:intergenic | 55.0% |
| AGGGTGGAAGAGTTGTCGGT+AGG | + | chr4_4:61452424-61452443 | None:intergenic | 55.0% | |
| CGGAGATGAGTTGTTCAGGG+TGG | + | chr4_4:61452440-61452459 | None:intergenic | 55.0% | |
| GTTAGCGGCGTCTTCTTTGC+CGG | + | chr4_4:61452460-61452479 | None:intergenic | 55.0% | |
| !! | AACGCTGTTGGTGGTGGAAC+CGG | - | chr4_4:61452674-61452693 | Msa0692790:CDS | 55.0% |
| ! | TGGTGGAACCGGTTCAGGTT+TGG | - | chr4_4:61452685-61452704 | Msa0692790:intron | 55.0% |
| ! | GGTGGAACCGGTTCAGGTTT+GGG | - | chr4_4:61452686-61452705 | Msa0692790:intron | 55.0% |
| TACCTGAGGGGAAGGGTAGA+TGG | + | chr4_4:61452771-61452790 | None:intergenic | 55.0% | |
| GGCGGTGCTCTTGGATAATG+AGG | - | chr4_4:61453006-61453025 | Msa0692790:CDS | 55.0% | |
| CAAACCTCAACGAGGTGGTG+AGG | + | chr4_4:61453120-61453139 | None:intergenic | 55.0% | |
| CAGCCTCCTTCAGTTGTTCC+TGG | - | chr4_4:61453776-61453795 | Msa0692790:CDS | 55.0% | |
| CCTCCTTCAGTTGTTCCTGG+CGG | - | chr4_4:61453779-61453798 | Msa0692790:CDS | 55.0% | |
| TCACCGCCAGGAACAACTGA+AGG | + | chr4_4:61453785-61453804 | None:intergenic | 55.0% | |
| CCAGTGGACAAAGGCTCTCT+TGG | + | chr4_4:61453906-61453925 | None:intergenic | 55.0% | |
| CCAAGAGAGCCTTTGTCCAC+TGG | - | chr4_4:61453903-61453922 | Msa0692790:intron | 55.0% | |
| TGTCCACTGGTATGTCGGTG+AGG | - | chr4_4:61453916-61453935 | Msa0692790:intron | 55.0% | |
| GTCCACTGGTATGTCGGTGA+GGG | - | chr4_4:61453917-61453936 | Msa0692790:intron | 55.0% | |
| ! | TCGGTGAGGGCATGGAAGAA+GGG | - | chr4_4:61453930-61453949 | Msa0692790:intron | 55.0% |
| TTGCGTACGCGTACTGCAAG+AGG | + | chr4_4:61454478-61454497 | None:intergenic | 55.0% | |
| AGCCTGACGGCATGATGCCT+AGG | - | chr4_4:61452178-61452197 | Msa0692790:three_prime_UTR | 60.0% | |
| AGATCTACGAAGACGGCGCG+TGG | + | chr4_4:61452366-61452385 | None:intergenic | 60.0% | |
| !! | GTTGGTGGTGGAACCGGTTC+AGG | - | chr4_4:61452680-61452699 | Msa0692790:intron | 60.0% |
| CACCATCTACCCTTCCCCTC+AGG | - | chr4_4:61452766-61452785 | Msa0692790:intron | 60.0% | |
| CACTGATGTGGCGGTGCTCT+TGG | - | chr4_4:61452997-61453016 | Msa0692790:CDS | 60.0% | |
| CATCCCTCACCACCTCGTTG+AGG | - | chr4_4:61453113-61453132 | Msa0692790:CDS | 60.0% | |
| CCGCCAGGAACAACTGAAGG+AGG | + | chr4_4:61453782-61453801 | None:intergenic | 60.0% | |
| TCCTGGCGGTGACCTTGCTA+AGG | - | chr4_4:61453793-61453812 | Msa0692790:CDS | 60.0% | |
| ACCTTAGCAAGGTCACCGCC+AGG | + | chr4_4:61453797-61453816 | None:intergenic | 60.0% | |
| TGCCCTCACCGACATACCAG+TGG | + | chr4_4:61453922-61453941 | None:intergenic | 60.0% | |
| CTGGTATGTCGGTGAGGGCA+TGG | - | chr4_4:61453922-61453941 | Msa0692790:intron | 60.0% | |
| ! | GTCGGTGAGGGCATGGAAGA+AGG | - | chr4_4:61453929-61453948 | Msa0692790:intron | 60.0% |
| ! | CGGTGAGGGCATGGAAGAAG+GGG | - | chr4_4:61453931-61453950 | Msa0692790:CDS | 60.0% |
| GGCGCGTGGAACGTGTTTGC+CGG | + | chr4_4:61452352-61452371 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 61451927 | 61454508 | 61451927 | ID=Msa0692790;Name=Msa0692790 |
| chr4_4 | mRNA | 61451927 | 61454508 | 61451927 | ID=Msa0692790-mRNA-1;Parent=Msa0692790;Name=Msa0692790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=160|1|1|1|0.8|0.66|6|365|449 |
| chr4_4 | exon | 61451927 | 61452047 | 61451927 | ID=Msa0692790-mRNA-1:exon:16988;Parent=Msa0692790-mRNA-1 |
| chr4_4 | exon | 61452137 | 61452693 | 61452137 | ID=Msa0692790-mRNA-1:exon:16987;Parent=Msa0692790-mRNA-1 |
| chr4_4 | exon | 61452992 | 61453500 | 61452992 | ID=Msa0692790-mRNA-1:exon:16986;Parent=Msa0692790-mRNA-1 |
| chr4_4 | exon | 61453648 | 61453847 | 61453648 | ID=Msa0692790-mRNA-1:exon:16985;Parent=Msa0692790-mRNA-1 |
| chr4_4 | exon | 61453931 | 61454145 | 61453931 | ID=Msa0692790-mRNA-1:exon:16984;Parent=Msa0692790-mRNA-1 |
| chr4_4 | exon | 61454236 | 61454508 | 61454236 | ID=Msa0692790-mRNA-1:exon:16983;Parent=Msa0692790-mRNA-1 |
| chr4_4 | five_prime_UTR | 61454349 | 61454508 | 61454349 | ID=Msa0692790-mRNA-1:five_prime_utr;Parent=Msa0692790-mRNA-1 |
| chr4_4 | CDS | 61454236 | 61454348 | 61454236 | ID=Msa0692790-mRNA-1:cds;Parent=Msa0692790-mRNA-1 |
| chr4_4 | CDS | 61453931 | 61454145 | 61453931 | ID=Msa0692790-mRNA-1:cds;Parent=Msa0692790-mRNA-1 |
| chr4_4 | CDS | 61453648 | 61453847 | 61453648 | ID=Msa0692790-mRNA-1:cds;Parent=Msa0692790-mRNA-1 |
| chr4_4 | CDS | 61452992 | 61453500 | 61452992 | ID=Msa0692790-mRNA-1:cds;Parent=Msa0692790-mRNA-1 |
| chr4_4 | CDS | 61452381 | 61452693 | 61452381 | ID=Msa0692790-mRNA-1:cds;Parent=Msa0692790-mRNA-1 |
| chr4_4 | three_prime_UTR | 61452137 | 61452380 | 61452137 | ID=Msa0692790-mRNA-1:three_prime_utr;Parent=Msa0692790-mRNA-1 |
| chr4_4 | three_prime_UTR | 61451927 | 61452047 | 61451927 | ID=Msa0692790-mRNA-1:three_prime_utr;Parent=Msa0692790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
