AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1441570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441570 MtrunA17_Chr1g0213861 97.771 1032 18 3 1 1032 1 1027 0.0 2070
Msa1441570 MtrunA17_Chr7g0221671 79.749 1037 194 7 4 1032 6 1034 0.0 1660
Msa1441570 MtrunA17_Chr7g0268271 65.079 63 22 0 651 713 3 65 2.24e-19 83.2
Msa1441570 MtrunA17_Chr7g0268281 84.783 46 7 0 608 653 1 46 5.72e-19 81.3
Msa1441570 MtrunA17_Chr7g0268261 85.185 54 8 0 900 953 1 54 1.97e-13 65.9
Msa1441570 MtrunA17_Chr4g0069091 22.034 649 393 24 1 573 1 612 4.41e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441570 AT2G31660.1 70.270 1036 289 7 5 1030 8 1034 0.0 1476
Msa1441570 AT3G59020.1 69.729 1034 292 7 4 1030 7 1026 0.0 1424
Msa1441570 AT3G59020.2 69.565 1035 293 7 4 1030 7 1027 0.0 1417

Find 285 sgRNAs with CRISPR-Local

Find 570 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTGGATCCTTCCTTTC+AGG 0.139990 tig0029330:+20790 Msa1441570:three_prime_UTR
ATATATAAATTACCAAATTT+TGG 0.144050 tig0029330:-16619 None:intergenic
TGTTAACATGCTACGCATTA+TGG 0.175977 tig0029330:-16899 None:intergenic
GCAGTCCTGTTGGCCATCTT+AGG 0.178159 tig0029330:+15041 Msa1441570:CDS
GCATTATGCGGGGAAGATTT+TGG 0.199329 tig0029330:+14170 Msa1441570:CDS
ACGCTCAAGTTCAGATTTAT+AGG 0.205041 tig0029330:-14987 None:intergenic
CATCAGAAATCTTCAATCTT+TGG 0.212439 tig0029330:+18536 Msa1441570:CDS
CAACAAAGGCTGCTGCATTT+TGG 0.228833 tig0029330:+16728 Msa1441570:intron
ATTTATTTCAGGCATTTATT+TGG 0.229478 tig0029330:+20575 Msa1441570:intron
ACCACAGATTCTTAAGCTTT+TGG 0.243604 tig0029330:+20464 Msa1441570:exon
AATTATGATTGGATATAGTT+TGG 0.244096 tig0029330:-21159 None:intergenic
TCTTGACTTCTTGCAGCATT+TGG 0.257051 tig0029330:-18561 None:intergenic
AGTTTATTCTGCAGATATTA+TGG 0.266161 tig0029330:+17620 Msa1441570:intron
TGTCACATAGATGGGTAAAT+TGG 0.266366 tig0029330:+20907 Msa1441570:three_prime_UTR
CTTCTCCCTTCGCTCCTTGA+TGG 0.266476 tig0029330:+16410 Msa1441570:CDS
GATGGAGCTCTTCTTGCTAT+TGG 0.266710 tig0029330:+14932 Msa1441570:CDS
ATTGATACGTTCATCTAAAA+AGG 0.269886 tig0029330:-20734 None:intergenic
ACTTGGGCTATGCCAAAATT+TGG 0.272370 tig0029330:+16607 Msa1441570:CDS
CCTTGGTTTAACATCCTTGC+TGG 0.273246 tig0029330:+18777 Msa1441570:CDS
ACTGTGGAGTTTAGCGCTTC+TGG 0.273824 tig0029330:+20707 Msa1441570:three_prime_UTR
CCACCAGTCCTCTGCAGTTT+AGG 0.276869 tig0029330:-17947 None:intergenic
TCTCAGATCAGAACAATTTC+CGG 0.301077 tig0029330:+16176 Msa1441570:CDS
TCGCCGATAAAGACTTTGTT+AGG 0.308150 tig0029330:+13306 Msa1441570:CDS
AGCTTATCTGTAAAATATTC+TGG 0.310967 tig0029330:+13735 Msa1441570:CDS
TGCAGATATTATGGTTCCTT+TGG 0.312879 tig0029330:+17629 Msa1441570:intron
AAAACTTCATTGCTAAGAAT+TGG 0.314964 tig0029330:+13258 Msa1441570:CDS
GATAAGAGAACTCAAGTGTT+TGG 0.315709 tig0029330:-20358 None:intergenic
TTTCAGAGGATGTTGGATTC+AGG 0.317562 tig0029330:+20682 Msa1441570:three_prime_UTR
GGCAAGAAAGTTTGCTGCCT+TGG 0.320902 tig0029330:+18760 Msa1441570:CDS
AGAAAATGACGACGATGATA+TGG 0.321952 tig0029330:+19075 Msa1441570:CDS
CTCTTCTCGTCTCAGCATGC+TGG 0.322424 tig0029330:-20403 None:intergenic
TCTTCTACCTGTCACATAGA+TGG 0.337679 tig0029330:+20898 Msa1441570:three_prime_UTR
CAGCGGTCAAAGTTGGTCTA+TGG 0.337689 tig0029330:+20600 Msa1441570:three_prime_UTR
GTTCTTTGCATGTAATGAAA+TGG 0.338050 tig0029330:-17677 None:intergenic
CCATCAGCAATGCGTTTAAC+AGG 0.338300 tig0029330:+21046 Msa1441570:three_prime_UTR
ATTCCTAACAAAGTCTTTAT+CGG 0.340148 tig0029330:-13309 None:intergenic
GTTTCACGGTTTCCAGCATA+TGG 0.341591 tig0029330:+20825 Msa1441570:three_prime_UTR
AAAGGATCCACTTCATCAAT+TGG 0.341738 tig0029330:-20157 None:intergenic
CAGTAGAATACAGGTCTTAT+AGG 0.342847 tig0029330:+14903 Msa1441570:CDS
GCCTTTCTTTCATTCGGATT+CGG 0.343757 tig0029330:-13107 None:intergenic
AAACAGGCAGCGTGGGTTGC+AGG 0.351039 tig0029330:+16133 Msa1441570:intron
ATGGAGCTCTTCTTGCTATT+GGG 0.353649 tig0029330:+14933 Msa1441570:CDS
AAGAATGCGGAGAACGAATA+AGG 0.358824 tig0029330:-13570 None:intergenic
ACTGTCCCCATCTTCTTGAT+TGG 0.360820 tig0029330:+13507 Msa1441570:CDS
ATGATAATGATCAAAAGCTT+TGG 0.361240 tig0029330:+14542 Msa1441570:CDS
GTCACATAGATGGGTAAATT+GGG 0.364341 tig0029330:+20908 Msa1441570:three_prime_UTR
CGCTCAAGTTCAGATTTATA+GGG 0.366117 tig0029330:-14986 None:intergenic
AAGACAATTTCAATCAGCTT+TGG 0.366324 tig0029330:-17924 None:intergenic
CACTGGACATGTGGAACCTT+TGG 0.368126 tig0029330:+17194 Msa1441570:CDS
TCCAATAGGAAACGTCATTC+AGG 0.373563 tig0029330:+20080 Msa1441570:intron
ATTATGATTGGATATAGTTT+GGG 0.376977 tig0029330:-21158 None:intergenic
CAACACGTCTTTCCCGAGTT+TGG 0.382141 tig0029330:+15019 Msa1441570:CDS
ATCAAAATGTATTCAGTGCT+TGG 0.383720 tig0029330:+13871 Msa1441570:CDS
CAGTGGTTCTGACAGGGAAA+TGG 0.388816 tig0029330:+19132 Msa1441570:CDS
CAGTCCTGTTGGCCATCTTA+GGG 0.388883 tig0029330:+15042 Msa1441570:CDS
GAATGGATGGATCAGGAATC+TGG 0.390772 tig0029330:-13694 None:intergenic
GGGACAGTGGTCGGGATAAT+CGG 0.391844 tig0029330:-13492 None:intergenic
ATTGAACGTTTGCATAGAAC+TGG 0.394636 tig0029330:+18002 Msa1441570:CDS
CCCCATGATTTGCGAAGATC+AGG 0.398780 tig0029330:-13954 None:intergenic
AATTCAAATCAGACGAAGAT+AGG 0.399839 tig0029330:+13606 Msa1441570:CDS
TGATAATGATCAAAAGCTTT+GGG 0.400167 tig0029330:+14543 Msa1441570:CDS
ATAAGAGAACTCAAGTGTTT+GGG 0.402571 tig0029330:-20357 None:intergenic
GTTAACATGCTACGCATTAT+GGG 0.406544 tig0029330:-16898 None:intergenic
AAGGATCCACTTCATCAATT+GGG 0.407208 tig0029330:-20156 None:intergenic
ATAGTTTGGGTTTACTATGT+TGG 0.408157 tig0029330:-21145 None:intergenic
TAAAAGAGTTGGAAGATGAT+TGG 0.409023 tig0029330:-13165 None:intergenic
GAAGCCATTGCTGCACTAAT+CGG 0.409071 tig0029330:-20856 None:intergenic
CTGACTATCAACAGTGTTTG+TGG 0.410520 tig0029330:+17700 Msa1441570:CDS
CCGTGCCACTCTTGATCTCC+TGG 0.410642 tig0029330:+18846 Msa1441570:CDS
AAGATCCACATGAGTATGTT+AGG 0.411092 tig0029330:+14569 Msa1441570:CDS
TCAGCAGCCTTTCTTTCATT+CGG 0.412223 tig0029330:-13113 None:intergenic
CGTCTGTCAGTAAACTAACT+AGG 0.414101 tig0029330:+13027 Msa1441570:five_prime_UTR
CTTAGCATATTGCAAAAGTT+AGG 0.417195 tig0029330:+18508 Msa1441570:CDS
ATCCTGATCTTCGCAAATCA+TGG 0.418182 tig0029330:+13952 Msa1441570:CDS
GAGACTATTGTGGACAAGTT+TGG 0.418235 tig0029330:+16563 Msa1441570:CDS
CACAAACACTGTTGATAGTC+AGG 0.421066 tig0029330:-17699 None:intergenic
ATTAATCAATAGAAAAGTTA+TGG 0.423401 tig0029330:-21108 None:intergenic
TTGCGAAGATCAGGATCAAC+AGG 0.425592 tig0029330:-13945 None:intergenic
CAAAGAAGAGGAAGTGGAGT+GGG 0.425945 tig0029330:+12926 Msa1441570:five_prime_UTR
TGAAGACCTTGTGTTTACTT+TGG 0.426103 tig0029330:+16541 Msa1441570:CDS
CTTTGGACAATTATATTTCA+AGG 0.426833 tig0029330:+17646 Msa1441570:CDS
CCAACATCCTCTGAAATCAA+TGG 0.426870 tig0029330:-20675 None:intergenic
GGCTGACCTTCCAAGGGAAC+AGG 0.427511 tig0029330:-13924 None:intergenic
TGGTTAGATATTGAAGAAGT+AGG 0.428313 tig0029330:-14257 None:intergenic
GTGAAGCAAAGAAGAGGAAG+TGG 0.430431 tig0029330:+12920 Msa1441570:five_prime_UTR
TGATCTCCTGGTTGCATACA+AGG 0.431116 tig0029330:+18858 Msa1441570:CDS
GCAGAGGACTGGTGGACCAC+TGG 0.433625 tig0029330:+17955 Msa1441570:CDS
GGGCTGCCAATGGTTGGTAT+AGG 0.437415 tig0029330:+20929 Msa1441570:three_prime_UTR
AACGCATTGCTGATGGGCAC+TGG 0.438256 tig0029330:-21039 None:intergenic
TGGCATAGCCCAAGTGCATA+AGG 0.439443 tig0029330:-16599 None:intergenic
GAAGATGATTGGGTGCATAT+TGG 0.439602 tig0029330:-13154 None:intergenic
AGAACTCAAGTGTTTGGGTC+AGG 0.439926 tig0029330:-20352 None:intergenic
TTCTTTGCATGTAATGAAAT+GGG 0.441132 tig0029330:-17676 None:intergenic
CAACACATTGCAATGCCTTC+CGG 0.443732 tig0029330:-16195 None:intergenic
GCATACAAGGATCAAGTTGC+AGG 0.446246 tig0029330:+18871 Msa1441570:CDS
TCAATGCGGACAGGTAGTTC+AGG 0.449994 tig0029330:-16235 None:intergenic
GTTTGATCCAATCAAGAAGA+TGG 0.450885 tig0029330:-13514 None:intergenic
GTTCTTCAAACTTATGAATG+AGG 0.452917 tig0029330:+16511 Msa1441570:CDS
TTCTTCAATATCTAACCAAC+AGG 0.453303 tig0029330:+14262 Msa1441570:CDS
CCCGAGTTTGGCAGTCCTGT+TGG 0.454925 tig0029330:+15031 Msa1441570:CDS
GGTTTCCATGCCAAGTTTCA+CGG 0.456471 tig0029330:+20811 Msa1441570:three_prime_UTR
GGTTTAGTTTAGAAGAGAGA+TGG 0.457673 tig0029330:+13049 Msa1441570:exon
CAATTGCCAGGAGAGGCTTT+AGG 0.466553 tig0029330:+18814 Msa1441570:CDS
GAACCTTTGGCCATTGATGA+TGG 0.467627 tig0029330:+17207 Msa1441570:CDS
TCTTATCAAGCTCTTGCAAA+TGG 0.467812 tig0029330:+20374 Msa1441570:CDS
AGTGGTTCTGACAGGGAAAT+GGG 0.468849 tig0029330:+19133 Msa1441570:CDS
ATTGGAGAGGCCTGTTCCCT+TGG 0.469011 tig0029330:+13914 Msa1441570:CDS
ATGGGAACTGATGCTGAAGA+TGG 0.471480 tig0029330:+19151 Msa1441570:CDS
TCCTGATCTTCGCAAATCAT+GGG 0.471937 tig0029330:+13953 Msa1441570:CDS
AAAGTTATGGAGTGACTGGC+TGG 0.472326 tig0029330:-21095 None:intergenic
TGTCTCGTGAATAATGTGAT+AGG 0.472814 tig0029330:-13636 None:intergenic
CACATGTCCAGTGATATTGT+TGG 0.473110 tig0029330:-17184 None:intergenic
TCTCCTGGCAATTGATCAGC+TGG 0.473397 tig0029330:-18805 None:intergenic
TTGAAGACTTGTATAGTCCT+AGG 0.475338 tig0029330:+14696 Msa1441570:CDS
CTTCCAGCTGATCAATTGCC+AGG 0.475735 tig0029330:+18802 Msa1441570:CDS
CAACATCCTCTGAAATCAAT+GGG 0.480986 tig0029330:-20674 None:intergenic
AGCTAGCTGAGCTGAGGAAG+AGG 0.482729 tig0029330:+12969 Msa1441570:five_prime_UTR
TCATCTGAGTCCTCATCATC+GGG 0.483411 tig0029330:-20103 None:intergenic
ACGATGATTTGTAAAAGAGT+TGG 0.483438 tig0029330:-13176 None:intergenic
AGGATGACAGTGGTTCTGAC+AGG 0.484366 tig0029330:+19125 Msa1441570:CDS
GTTAAATATATTGAGAAGGT+GGG 0.484925 tig0029330:-13663 None:intergenic
AAATCCACGGAGGCAGTCCT+AGG 0.485246 tig0029330:-14713 None:intergenic
GTCATCTGAGTCCTCATCAT+CGG 0.486522 tig0029330:-20104 None:intergenic
CCATTGATTTCAGAGGATGT+TGG 0.487777 tig0029330:+20675 Msa1441570:three_prime_UTR
ATGTTTCACAAGCATTATGC+GGG 0.488084 tig0029330:+14159 Msa1441570:CDS
CTATAAGACCTGTATTCTAC+TGG 0.488098 tig0029330:-14902 None:intergenic
ATGCTGGAAACCGTGAAACT+TGG 0.488760 tig0029330:-20821 None:intergenic
ACTTAGAAAATTGACTGATC+AGG 0.489306 tig0029330:+19195 Msa1441570:CDS
TTGGCCCTAAGATGGCCAAC+AGG 0.489970 tig0029330:-15046 None:intergenic
TGACATTCAACAGATTTAAG+TGG 0.490324 tig0029330:-14197 None:intergenic
GCTACTTGAATGGATGGATC+AGG 0.491104 tig0029330:-13701 None:intergenic
AGAAGATGGGGACAGTGGTC+GGG 0.491280 tig0029330:-13500 None:intergenic
CCTGTTAAACGCATTGCTGA+TGG 0.492883 tig0029330:-21046 None:intergenic
GCTAGCTGAGCTGAGGAAGA+GGG 0.493839 tig0029330:+12970 Msa1441570:five_prime_UTR
TTTCTCTCCAACAATATCAC+TGG 0.494642 tig0029330:+17177 Msa1441570:CDS
GAAGTAGTTGTTATACTTGA+AGG 0.494802 tig0029330:+13074 Msa1441570:CDS
TAGAAAAGTTATGGAGTGAC+TGG 0.496000 tig0029330:-21099 None:intergenic
CAAGAGTGGCACGGAATACC+CGG 0.497487 tig0029330:-18837 None:intergenic
TGAGATTGAGAAGGAAAAGT+CGG 0.497844 tig0029330:+20427 Msa1441570:CDS
ATGAAGCACCAGTAGAATAC+AGG 0.501247 tig0029330:+14894 Msa1441570:CDS
TGATGGAAGCACTATCAGAT+TGG 0.503592 tig0029330:+17224 Msa1441570:CDS
GATGGAAGCACTATCAGATT+GGG 0.504868 tig0029330:+17225 Msa1441570:CDS
GCCAACAGGACTGCCAAACT+CGG 0.505683 tig0029330:-15032 None:intergenic
ATCAACAGGCTGACCTTCCA+AGG 0.505833 tig0029330:-13931 None:intergenic
GCAAAGAAGAGGAAGTGGAG+TGG 0.506059 tig0029330:+12925 Msa1441570:five_prime_UTR
GGACAAGTTTGGTGAAGAAA+TGG 0.506738 tig0029330:+16574 Msa1441570:CDS
ACCCGGCCTAAAGCCTCTCC+TGG 0.506757 tig0029330:-18820 None:intergenic
AAAAGAGTTGGAAGATGATT+GGG 0.509158 tig0029330:-13164 None:intergenic
TTCGCAAATCATGGGGTTGG+TGG 0.509717 tig0029330:+13961 Msa1441570:CDS
GAAATGGCACCTTATGCACT+TGG 0.509924 tig0029330:+16590 Msa1441570:CDS
AGTAGGTTGATAACTCTGTC+AGG 0.510634 tig0029330:-14240 None:intergenic
ACAGTCCCCAATTGATGAAG+TGG 0.510949 tig0029330:+20150 Msa1441570:CDS
GCCAGGAGAGGCTTTAGGCC+GGG 0.512244 tig0029330:+18819 Msa1441570:CDS
TTTGGACAATTATATTTCAA+GGG 0.512445 tig0029330:+17647 Msa1441570:CDS
AAAGGCTGCTGAACAAAGGT+TGG 0.513295 tig0029330:+13124 Msa1441570:CDS
CGCTGATGATTCAAGTTCAA+TGG 0.515595 tig0029330:+16783 Msa1441570:CDS
CTTTGCAGAAGCTGCAGAAG+AGG 0.515709 tig0029330:+19039 Msa1441570:intron
AAGAAGATGGGGACAGTGGT+CGG 0.516125 tig0029330:-13501 None:intergenic
TGTTAAATATATTGAGAAGG+TGG 0.516144 tig0029330:-13664 None:intergenic
TCGGACAGGATTCCATATGC+TGG 0.517517 tig0029330:-20837 None:intergenic
TGCCAGGAGAGGCTTTAGGC+CGG 0.518509 tig0029330:+18818 Msa1441570:CDS
TCTTCTCGTCTCAGCATGCT+GGG 0.520955 tig0029330:-20402 None:intergenic
AGATCAGCTACTTGAATGGA+TGG 0.521067 tig0029330:-13707 None:intergenic
TTTATTGAAGCTTGCAAAGG+TGG 0.522081 tig0029330:+16280 Msa1441570:CDS
CTGTTAAACGCATTGCTGAT+GGG 0.523820 tig0029330:-21045 None:intergenic
GTGAGTTGGTTCGAAAGCGC+AGG 0.523922 tig0029330:+14741 Msa1441570:CDS
CTTCTACCTGTCACATAGAT+GGG 0.524100 tig0029330:+20899 Msa1441570:three_prime_UTR
TGTATACTGTGCTGCAGCCT+CGG 0.524758 tig0029330:+14473 Msa1441570:CDS
TCAATTGTAATTCTGAGATA+CGG 0.526551 tig0029330:-17984 None:intergenic
CTTCCTAAACTGCAGAGGAC+TGG 0.526734 tig0029330:+17944 Msa1441570:CDS
TTTGGCTCAGCGGTCAAAGT+TGG 0.527318 tig0029330:+20593 Msa1441570:three_prime_UTR
TTTGATCCAATCAAGAAGAT+GGG 0.528330 tig0029330:-13513 None:intergenic
CGCATTATGGGAAGCAAGGT+AGG 0.531290 tig0029330:-16886 None:intergenic
GTCATTCAGGCCCGATGATG+AGG 0.532142 tig0029330:+20093 Msa1441570:CDS
GAGAGGCCTGTTCCCTTGGA+AGG 0.534183 tig0029330:+13918 Msa1441570:CDS
AATTTACCCATCTATGTGAC+AGG 0.535722 tig0029330:-20905 None:intergenic
TCCGAATCCGAATGAAAGAA+AGG 0.536209 tig0029330:+13106 Msa1441570:CDS
ACCGTACCTTGGCCCTAAGA+TGG 0.536280 tig0029330:-15054 None:intergenic
CTGTTGAATGTCATTCGAGC+AGG 0.539977 tig0029330:+14207 Msa1441570:CDS
GAAATGTCTTCTCATTCAAG+TGG 0.539995 tig0029330:+18037 Msa1441570:CDS
TGTTGGCCATCTTAGGGCCA+AGG 0.540483 tig0029330:+15048 Msa1441570:CDS
AGCGGTCAAAGTTGGTCTAT+GGG 0.542588 tig0029330:+20601 Msa1441570:three_prime_UTR
AAATTGGGGCTGCCAATGGT+TGG 0.543562 tig0029330:+20923 Msa1441570:three_prime_UTR
AGCTGATCAATTGCCAGGAG+AGG 0.544550 tig0029330:+18807 Msa1441570:CDS
ATCTTCGCAAATCATGGGGT+TGG 0.544792 tig0029330:+13958 Msa1441570:CDS
GATAGTGCTTCCATCATCAA+TGG 0.545002 tig0029330:-17217 None:intergenic
CAGAGGACTGGTGGACCACT+GGG 0.550023 tig0029330:+17956 Msa1441570:CDS
GGGTAAATTGGGGCTGCCAA+TGG 0.550812 tig0029330:+20919 Msa1441570:three_prime_UTR
TGGGAACTGATGCTGAAGAT+GGG 0.553757 tig0029330:+19152 Msa1441570:CDS
CAACAATATCACTGGACATG+TGG 0.554151 tig0029330:+17185 Msa1441570:CDS
TCGTGAATAATGTGATAGGC+AGG 0.555259 tig0029330:-13632 None:intergenic
AGGTCTTATAGGCAGAAAGA+TGG 0.556191 tig0029330:+14914 Msa1441570:CDS
CTCAAAAGAGAAGGAAGTTG+AGG 0.557170 tig0029330:-13350 None:intergenic
GTTTACTTTGGAGACTATTG+TGG 0.557940 tig0029330:+16553 Msa1441570:CDS
CATTGCTGCACTAATCGGAC+AGG 0.558667 tig0029330:-20851 None:intergenic
GATGAGATCAGCTACTTGAA+TGG 0.559770 tig0029330:-13711 None:intergenic
TGCAGAAGCTGCAGAAGAGG+AGG 0.562224 tig0029330:+19042 Msa1441570:intron
AAAGAAGAGGAAGTGGAGTG+GGG 0.564424 tig0029330:+12927 Msa1441570:five_prime_UTR
CACGTACCATCAAGGAGCGA+AGG 0.566318 tig0029330:-16416 None:intergenic
GCTGCGAAACCCTGAAAACA+AGG 0.567003 tig0029330:+14125 Msa1441570:CDS
GGTTATACGTACATATATAG+AGG 0.568759 tig0029330:-13759 None:intergenic
CACTGGATTTATACTCTCAA+CGG 0.569482 tig0029330:-21022 None:intergenic
GAGTATGTTAGGAAAGGCTA+TGG 0.572371 tig0029330:+14580 Msa1441570:CDS
ATCAGCTGGAAGTGCCAGCA+AGG 0.574149 tig0029330:-18791 None:intergenic
GGCATGGAAACCTGAAAGGA+AGG 0.575536 tig0029330:-20800 None:intergenic
CAGCATGCTGAGACGAGAAG+AGG 0.576433 tig0029330:+20404 Msa1441570:CDS
GAATGGCGGCAACTTGTCTG+AGG 0.576913 tig0029330:-13229 None:intergenic
GTCTGTCAGTAAACTAACTA+GGG 0.577916 tig0029330:+13028 Msa1441570:five_prime_UTR
TTAAATATATTGAGAAGGTG+GGG 0.581029 tig0029330:-13662 None:intergenic
CCTAAACTGCAGAGGACTGG+TGG 0.581251 tig0029330:+17947 Msa1441570:CDS
GAGAAGAGGTGAGATTGAGA+AGG 0.581346 tig0029330:+20418 Msa1441570:CDS
TTGAATGTCATTCGAGCAGG+TGG 0.583758 tig0029330:+14210 Msa1441570:CDS
TAAGGGAATACCTTGACCAT+CGG 0.584319 tig0029330:-16923 None:intergenic
ACTTGGCATGGAAACCTGAA+AGG 0.585820 tig0029330:-20804 None:intergenic
ATAGCATACCTCAAAAGAGA+AGG 0.586840 tig0029330:-13359 None:intergenic
TTGGACAATTATATTTCAAG+GGG 0.589802 tig0029330:+17648 Msa1441570:CDS
CCACATGAGTATGTTAGGAA+AGG 0.589934 tig0029330:+14574 Msa1441570:CDS
CTAGTTAGTTTACTGACAGA+CGG 0.590620 tig0029330:-13026 None:intergenic
CTGTCCGATTAGTGCAGCAA+TGG 0.593204 tig0029330:+20852 Msa1441570:three_prime_UTR
AAAACAGAATCAATGCGGAC+AGG 0.593718 tig0029330:-16244 None:intergenic
TATCATTGAAGCACATGAGA+GGG 0.594402 tig0029330:-14525 None:intergenic
AATGTTTCACAAGCATTATG+CGG 0.595466 tig0029330:+14158 Msa1441570:CDS
TCCAAAAGCTTAAGAATCTG+TGG 0.596418 tig0029330:-20465 None:intergenic
AAAGAAAGGCTGCTGAACAA+AGG 0.597576 tig0029330:+13120 Msa1441570:CDS
TCAAGTTCAATGGCTGCAGT+TGG 0.600507 tig0029330:+16793 Msa1441570:CDS
CCAACAGGACTGCCAAACTC+GGG 0.601191 tig0029330:-15031 None:intergenic
AGGATCCACTTCATCAATTG+GGG 0.601464 tig0029330:-20155 None:intergenic
CATATTTAATAGAAAGAATG+CGG 0.602450 tig0029330:-13583 None:intergenic
ATGTTAACAACCGATGGTCA+AGG 0.603700 tig0029330:+16913 Msa1441570:CDS
CTTGATCCTTGTATGCAACC+AGG 0.604622 tig0029330:-18864 None:intergenic
GAGGTTCCCATTGATTTCAG+AGG 0.604872 tig0029330:+20668 Msa1441570:three_prime_UTR
AAATTGCCTATACCAACCAT+TGG 0.605583 tig0029330:-20935 None:intergenic
CTAGCTGAGCTGAGGAAGAG+GGG 0.606609 tig0029330:+12971 Msa1441570:five_prime_UTR
GTGTGTTAAATATATTGAGA+AGG 0.607757 tig0029330:-13667 None:intergenic
TCTGATCTGAGAAGCTAATG+TGG 0.613687 tig0029330:-16165 None:intergenic
GGATGACAGTGGTTCTGACA+GGG 0.618263 tig0029330:+19126 Msa1441570:CDS
GCGAGTGTGAAGCAAAGAAG+AGG 0.618413 tig0029330:+12914 Msa1441570:five_prime_UTR
TTCTAAACAGACTCTACACT+CGG 0.620641 tig0029330:+14009 Msa1441570:CDS
GCTACGCATTATGGGAAGCA+AGG 0.622515 tig0029330:-16890 None:intergenic
TGAGTTGGTTCGAAAGCGCA+GGG 0.626418 tig0029330:+14742 Msa1441570:CDS
TAGTCCTAGGACTGCCTCCG+TGG 0.626651 tig0029330:+14709 Msa1441570:CDS
CAGGCATTTATTTGGCTCAG+CGG 0.627478 tig0029330:+20583 Msa1441570:intron
AAATGGCACCTTATGCACTT+GGG 0.628408 tig0029330:+16591 Msa1441570:CDS
CGTAGCATGTTAACAACCGA+TGG 0.630518 tig0029330:+16907 Msa1441570:CDS
CTTGAAATATAATTGTCCAA+AGG 0.630964 tig0029330:-17645 None:intergenic
AATGGCGGCAACTTGTCTGA+GGG 0.630984 tig0029330:-13228 None:intergenic
CCTGCGAGTTTAGTATGCTG+AGG 0.633004 tig0029330:+20649 Msa1441570:three_prime_UTR
CAACTCACTCATAAAATCCA+CGG 0.633012 tig0029330:-14726 None:intergenic
AAAAGAAGAACGTCAAGCCG+AGG 0.634422 tig0029330:-14490 None:intergenic
CTGCAAGAAGTCAAGAAGAG+TGG 0.634459 tig0029330:+18568 Msa1441570:CDS
TTATCATTGAAGCACATGAG+AGG 0.634688 tig0029330:-14526 None:intergenic
ATTGTCTTCCTAAACTGCAG+AGG 0.634847 tig0029330:+17939 Msa1441570:CDS
GGAAACCGTGAAACTTGGCA+TGG 0.636126 tig0029330:-20816 None:intergenic
TCACATAGATGGGTAAATTG+GGG 0.636621 tig0029330:+20909 Msa1441570:three_prime_UTR
CTTCCATCATCAATGGCCAA+AGG 0.636876 tig0029330:-17210 None:intergenic
GAAAGAGATTGAGTGAGCAG+TGG 0.640985 tig0029330:-13285 None:intergenic
TTGTACAGCTAGCTGAGCTG+AGG 0.641168 tig0029330:+12963 Msa1441570:five_prime_UTR
AAATGTATTCAGTGCTTGGA+TGG 0.641307 tig0029330:+13875 Msa1441570:CDS
ACGTACCATCAAGGAGCGAA+GGG 0.642973 tig0029330:-16415 None:intergenic
AGTTTACTGACAGACGGAGA+GGG 0.645436 tig0029330:-13020 None:intergenic
CCTGATCTTCGCAAATCATG+GGG 0.645502 tig0029330:+13954 Msa1441570:CDS
CCTCAGCATACTAAACTCGC+AGG 0.646135 tig0029330:-20649 None:intergenic
CCTTTCCTAACATACTCATG+TGG 0.647215 tig0029330:-14574 None:intergenic
TCAAACTGATGATGAAGATG+AGG 0.647870 tig0029330:+19105 Msa1441570:CDS
CTGATCTGAGAAGCTAATGT+GGG 0.648144 tig0029330:-16164 None:intergenic
TTGATCCAATCAAGAAGATG+GGG 0.650413 tig0029330:-13512 None:intergenic
CCAGGAGATCAAGAGTGGCA+CGG 0.650577 tig0029330:-18846 None:intergenic
TGCAACCAGGAGATCAAGAG+TGG 0.652472 tig0029330:-18851 None:intergenic
TGCAATCATCAGATCCAATG+AGG 0.656544 tig0029330:+20321 Msa1441570:CDS
AATCAAGAAGATGGGGACAG+TGG 0.659255 tig0029330:-13505 None:intergenic
GCATTGCAATGTGTTGTCTG+TGG 0.661281 tig0029330:+16202 Msa1441570:CDS
TAGTTTACTGACAGACGGAG+AGG 0.668057 tig0029330:-13021 None:intergenic
AGATCAGAACAATTTCCGGA+AGG 0.668438 tig0029330:+16180 Msa1441570:CDS
GGGAACTGATGCTGAAGATG+GGG 0.669290 tig0029330:+19153 Msa1441570:CDS
ATGTTGGATTCAGGAAACTG+TGG 0.669716 tig0029330:+20691 Msa1441570:three_prime_UTR
TCAACAGGCTGACCTTCCAA+GGG 0.680227 tig0029330:-13930 None:intergenic
TAGTCTCCAAAGTAAACACA+AGG 0.681795 tig0029330:-16547 None:intergenic
AATGACGACGATGATATGGA+CGG 0.695430 tig0029330:+19079 Msa1441570:CDS
CAATATGCTAAGAGTCAATG+TGG 0.695584 tig0029330:-18497 None:intergenic
TGTTTCACAAGCATTATGCG+GGG 0.696183 tig0029330:+14160 Msa1441570:CDS
GAAAAGGAGTAGAACAACGA+CGG 0.699603 tig0029330:-20762 None:intergenic
TGAGATACGGCTCAACCCAG+TGG 0.705549 tig0029330:-17971 None:intergenic
CCAGCAAGGATGTTAAACCA+AGG 0.712970 tig0029330:-18777 None:intergenic
GATGAAGATGAGGATGACAG+TGG 0.770603 tig0029330:+19115 Msa1441570:CDS
CTCACTCATAAAATCCACGG+AGG 0.783942 tig0029330:-14723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATACATAAATAGA+AGG - tig0029330:15144-15163 None:intergenic 10.0%
!!! TCTATTTATGTATTTTAAAT+TGG + tig0029330:15144-15163 Msa1441570:intron 10.0%
!! AAAAAATAATTATATACTCA+TGG - tig0029330:15664-15683 None:intergenic 10.0%
!!! ATATATAAATTACCAAATTT+TGG - tig0029330:16622-16641 None:intergenic 10.0%
!!! TTGAATTTTTATCATTAATT+TGG + tig0029330:17749-17768 Msa1441570:intron 10.0%
!! AAAAATAAATAAAAGAGTTA+CGG - tig0029330:18916-18935 None:intergenic 10.0%
!!! TAAAATATTTTAATCTGTAT+AGG + tig0029330:19412-19431 Msa1441570:intron 10.0%
!! TATTATTAAAACCAAAAAAA+TGG - tig0029330:21000-21019 None:intergenic 10.0%
!! TTTGAATGAATAAAATGAAA+TGG - tig0029330:14049-14068 None:intergenic 15.0%
!! GTTAAGAATAATAAGATTTA+TGG + tig0029330:14832-14851 Msa1441570:intron 15.0%
!!! TGCCTTATTTAATTTTTTTT+GGG - tig0029330:15260-15279 None:intergenic 15.0%
!!! ATGTTTGTTACTTAATAAAA+GGG + tig0029330:17464-17483 Msa1441570:intron 15.0%
!! CAAATTTCTTAAAGATAATA+GGG + tig0029330:18404-18423 Msa1441570:intron 15.0%
!! TCCATATATTAACTAAATAT+AGG + tig0029330:19257-19276 Msa1441570:intron 15.0%
!! TCCTATATTTAGTTAATATA+TGG - tig0029330:19261-19280 None:intergenic 15.0%
!! AAATCATTAAGTTAACAAAA+TGG - tig0029330:19766-19785 None:intergenic 15.0%
!! TCTATAATTCAAATAAACTA+TGG - tig0029330:19800-19819 None:intergenic 15.0%
!!! TTGTATTTTAACCATTTTTT+TGG + tig0029330:20986-21005 Msa1441570:three_prime_UTR 15.0%
!! ATTAATCAATAGAAAAGTTA+TGG - tig0029330:21111-21130 None:intergenic 15.0%
!!! AATGAAGTTTTTGAAATGAA+TGG - tig0029330:13249-13268 None:intergenic 20.0%
!! CATATTTAATAGAAAGAATG+CGG - tig0029330:13586-13605 None:intergenic 20.0%
!! ATGATGAAAATAATAAGAGA+AGG - tig0029330:13787-13806 None:intergenic 20.0%
!! TAAAAAAATGAAGATGAAGA+CGG - tig0029330:13815-13834 None:intergenic 20.0%
!!! TTTTTTTAAATTTACGCAGT+TGG + tig0029330:13827-13846 Msa1441570:intron 20.0%
!!! TCATTGTTGAAATTTTGAAA+AGG + tig0029330:14792-14811 Msa1441570:CDS 20.0%
!! GAATAATAAGATTTATGGAT+TGG + tig0029330:14837-14856 Msa1441570:intron 20.0%
!!! ATTTATGTTTTTTCCATTCT+AGG + tig0029330:14867-14886 Msa1441570:intron 20.0%
!!! AAAGGGATGTTTTAAATTTT+AGG + tig0029330:15233-15252 Msa1441570:intron 20.0%
!!! GCCTTATTTAATTTTTTTTG+GGG - tig0029330:15259-15278 None:intergenic 20.0%
!!! GTGCCTTATTTAATTTTTTT+TGG - tig0029330:15261-15280 None:intergenic 20.0%
!!! AATTAAATAAGGCACTATAA+AGG + tig0029330:15266-15285 Msa1441570:intron 20.0%
!!! ATTTTATGAAAAAAACACAC+TGG + tig0029330:15290-15309 Msa1441570:intron 20.0%
!! AAATAATTATATACTCATGG+AGG - tig0029330:15661-15680 None:intergenic 20.0%
!!! TAATTATTTTTTTCATCGCA+CGG + tig0029330:15672-15691 Msa1441570:intron 20.0%
!! AATTCAAGAATTGAACAAAA+AGG + tig0029330:15758-15777 Msa1441570:intron 20.0%
!! ATTCAAGAATTGAACAAAAA+GGG + tig0029330:15759-15778 Msa1441570:intron 20.0%
!! TTATAGTGAAAGCAATATTA+AGG - tig0029330:15979-15998 None:intergenic 20.0%
!! AGTATTTGAGTAATACATTA+TGG + tig0029330:16061-16080 Msa1441570:intron 20.0%
!! CAAAATTCTTTAGATAATGA+AGG - tig0029330:16089-16108 None:intergenic 20.0%
!!! CTTCATTATCTAAAGAATTT+TGG + tig0029330:16087-16106 Msa1441570:intron 20.0%
!!! TATTGATTTCTTTTCAAGTA+TGG + tig0029330:17249-17268 Msa1441570:intron 20.0%
!!! CTTTTATTAAGTAACAAACA+TGG - tig0029330:17465-17484 None:intergenic 20.0%
!!! CATGTTTGTTACTTAATAAA+AGG + tig0029330:17463-17482 Msa1441570:intron 20.0%
!!! ATATCTTTCAAATATTTTCC+TGG + tig0029330:17530-17549 Msa1441570:intron 20.0%
!! TTTGGACAATTATATTTCAA+GGG + tig0029330:17647-17666 Msa1441570:CDS 20.0%
!! AATGTTCAAAATAGAAACAT+GGG - tig0029330:18177-18196 None:intergenic 20.0%
!!! CCTATTATCTTTAAGAAATT+TGG - tig0029330:18406-18425 None:intergenic 20.0%
!! CCAAATTTCTTAAAGATAAT+AGG + tig0029330:18403-18422 Msa1441570:intron 20.0%
!! TAAATTACAATATGATTGTC+AGG + tig0029330:18978-18997 Msa1441570:intron 20.0%
!!! ATGTTTTATTGTTTACTACT+AGG + tig0029330:19514-19533 Msa1441570:intron 20.0%
!! ACTTTATACTATGTCAAATT+TGG - tig0029330:19548-19567 None:intergenic 20.0%
!!! GATTCATATTTGTATCTTTT+AGG + tig0029330:19925-19944 Msa1441570:intron 20.0%
!! GTATCCACAAAAAAAATAAA+AGG - tig0029330:20178-20197 None:intergenic 20.0%
!! ACAATTATAGCAATAATGAT+AGG - tig0029330:20259-20278 None:intergenic 20.0%
!! ATTTATTTCAGGCATTTATT+TGG + tig0029330:20575-20594 Msa1441570:intron 20.0%
! AAAACTTCATTGCTAAGAAT+TGG + tig0029330:13258-13277 Msa1441570:CDS 25.0%
! ATTCCTAACAAAGTCTTTAT+CGG - tig0029330:13312-13331 None:intergenic 25.0%
! TTAAATATATTGAGAAGGTG+GGG - tig0029330:13665-13684 None:intergenic 25.0%
! GTTAAATATATTGAGAAGGT+GGG - tig0029330:13666-13685 None:intergenic 25.0%
! TGTTAAATATATTGAGAAGG+TGG - tig0029330:13667-13686 None:intergenic 25.0%
! GTGTGTTAAATATATTGAGA+AGG - tig0029330:13670-13689 None:intergenic 25.0%
! AGCTTATCTGTAAAATATTC+TGG + tig0029330:13735-13754 Msa1441570:CDS 25.0%
! TGAAAATAATAAGAGAAGGT+AGG - tig0029330:13783-13802 None:intergenic 25.0%
!! TTTTGATCAAACAAAAGCTT+TGG - tig0029330:13858-13877 None:intergenic 25.0%
!!! TGTTTTTAAATGTATTGGAG+AGG + tig0029330:13901-13920 Msa1441570:CDS 25.0%
! TATCATATAAACCTCTTTAG+TGG + tig0029330:14293-14312 Msa1441570:intron 25.0%
!! ATTTTCTACCATCAAATTTC+AGG + tig0029330:14381-14400 Msa1441570:intron 25.0%
!! ATGATAATGATCAAAAGCTT+TGG + tig0029330:14542-14561 Msa1441570:CDS 25.0%
!! TGATAATGATCAAAAGCTTT+GGG + tig0029330:14543-14562 Msa1441570:CDS 25.0%
! TGTGCACATATAAATTGTAT+AGG - tig0029330:15082-15101 None:intergenic 25.0%
! GCCCCAAAAAAAATTAAATA+AGG + tig0029330:15255-15274 Msa1441570:intron 25.0%
!!! AATTATTTTTTTCATCGCAC+GGG + tig0029330:15673-15692 Msa1441570:intron 25.0%
!!! CTTTGCTGTTTTATTTTGTA+TGG + tig0029330:15797-15816 Msa1441570:intron 25.0%
! CAAAACACTAATACTTTCTT+TGG - tig0029330:16002-16021 None:intergenic 25.0%
!!! TCTCTGTTTATTTTGTGATT+TGG + tig0029330:16309-16328 Msa1441570:intron 25.0%
! CATCAAGATTAATCTTTACT+AGG - tig0029330:16341-16360 None:intergenic 25.0%
! TACATTGTACTTATTTGACT+TGG + tig0029330:16455-16474 Msa1441570:intron 25.0%
!! AACTCTGAAAATATTTGTGT+TGG - tig0029330:16494-16513 None:intergenic 25.0%
! CAGATAAACATGATTCATAA+GGG - tig0029330:16943-16962 None:intergenic 25.0%
! TCAGATAAACATGATTCATA+AGG - tig0029330:16944-16963 None:intergenic 25.0%
! TATACACATTTATTGAGCAA+AGG + tig0029330:17031-17050 Msa1441570:intron 25.0%
! TATCACTCATTTAGCATTAT+TGG + tig0029330:17082-17101 Msa1441570:intron 25.0%
!!! AGAGGTTTTTGAAGAAATTT+TGG + tig0029330:17132-17151 Msa1441570:intron 25.0%
! ATCCATACTATTCAAAAACA+TGG + tig0029330:17506-17525 Msa1441570:intron 25.0%
!!! TTCCATGTTTTTGAATAGTA+TGG - tig0029330:17511-17530 None:intergenic 25.0%
! AGTTTATTCTGCAGATATTA+TGG + tig0029330:17620-17639 Msa1441570:intron 25.0%
! CTTGAAATATAATTGTCCAA+AGG - tig0029330:17648-17667 None:intergenic 25.0%
! CTTTGGACAATTATATTTCA+AGG + tig0029330:17646-17665 Msa1441570:CDS 25.0%
! TTGGACAATTATATTTCAAG+GGG + tig0029330:17648-17667 Msa1441570:CDS 25.0%
! TTCTTTGCATGTAATGAAAT+GGG - tig0029330:17679-17698 None:intergenic 25.0%
!!! TCAATTGTAATTCTGAGATA+CGG - tig0029330:17987-18006 None:intergenic 25.0%
! GAAAAGAAAACATGGTATAA+TGG - tig0029330:18152-18171 None:intergenic 25.0%
! CAATGTTCAAAATAGAAACA+TGG - tig0029330:18178-18197 None:intergenic 25.0%
!!! CATGTTTCTATTTTGAACAT+TGG + tig0029330:18176-18195 Msa1441570:intron 25.0%
!!! TTTTTTTTGCAGATTTCAGA+TGG + tig0029330:18460-18479 Msa1441570:intron 25.0%
! AAACTAATTACGAAGTTTCA+GGG - tig0029330:19620-19639 None:intergenic 25.0%
! AAACAAAGTATGATTCCATT+AGG + tig0029330:19676-19695 Msa1441570:intron 25.0%
! TTACTTTAAGCAAAAGTTCT+GGG - tig0029330:19714-19733 None:intergenic 25.0%
! ATTACTTTAAGCAAAAGTTC+TGG - tig0029330:19715-19734 None:intergenic 25.0%
!! TATTTTATCTTCCAAGAGAA+AGG - tig0029330:19966-19985 None:intergenic 25.0%
!!! GGATCCTTTTATTTTTTTTG+TGG + tig0029330:20171-20190 Msa1441570:CDS 25.0%
!!! TTTTTTGTGGATACAATGAA+AGG + tig0029330:20184-20203 Msa1441570:CDS 25.0%
! ATAGCAATAATGATAGGTAT+TGG - tig0029330:20253-20272 None:intergenic 25.0%
! ATTGATACGTTCATCTAAAA+AGG - tig0029330:20737-20756 None:intergenic 25.0%
GAAGTAGTTGTTATACTTGA+AGG + tig0029330:13074-13093 Msa1441570:CDS 30.0%
AAAAGAGTTGGAAGATGATT+GGG - tig0029330:13167-13186 None:intergenic 30.0%
TAAAAGAGTTGGAAGATGAT+TGG - tig0029330:13168-13187 None:intergenic 30.0%
! ACGATGATTTGTAAAAGAGT+TGG - tig0029330:13179-13198 None:intergenic 30.0%
!!! GAAGTTTTTGAAATGAATGG+CGG - tig0029330:13246-13265 None:intergenic 30.0%
GAATGGGAATTATTACAAAC+AGG - tig0029330:13425-13444 None:intergenic 30.0%
! ATAATTCCCATTCCATTTTC+AGG + tig0029330:13432-13451 Msa1441570:intron 30.0%
! TAATTCCCATTCCATTTTCA+GGG + tig0029330:13433-13452 Msa1441570:intron 30.0%
TTTGATCCAATCAAGAAGAT+GGG - tig0029330:13516-13535 None:intergenic 30.0%
AATTCAAATCAGACGAAGAT+AGG + tig0029330:13606-13625 Msa1441570:CDS 30.0%
GGTTATACGTACATATATAG+AGG - tig0029330:13762-13781 None:intergenic 30.0%
ATCAAAATGTATTCAGTGCT+TGG + tig0029330:13871-13890 Msa1441570:CDS 30.0%
!!! GGTGCTGTTTTTAAATGTAT+TGG + tig0029330:13896-13915 Msa1441570:CDS 30.0%
! TCTATGCTTGTTTACAGTTT+TGG + tig0029330:14093-14112 Msa1441570:intron 30.0%
AATGTTTCACAAGCATTATG+CGG + tig0029330:14158-14177 Msa1441570:CDS 30.0%
TGACATTCAACAGATTTAAG+TGG - tig0029330:14200-14219 None:intergenic 30.0%
TGGTTAGATATTGAAGAAGT+AGG - tig0029330:14260-14279 None:intergenic 30.0%
TTCTTCAATATCTAACCAAC+AGG + tig0029330:14262-14281 Msa1441570:CDS 30.0%
!! TATGATATAGAAGTACCTGT+TGG - tig0029330:14280-14299 None:intergenic 30.0%
CAATATGTCCTGAAATTTGA+TGG - tig0029330:14392-14411 None:intergenic 30.0%
AAAACAAAAGAGAGTGAATC+TGG - tig0029330:15119-15138 None:intergenic 30.0%
! TCCCTTTAAAGACTATATCT+GGG - tig0029330:15220-15239 None:intergenic 30.0%
! ATCCCTTTAAAGACTATATC+TGG - tig0029330:15221-15240 None:intergenic 30.0%
! AATTAGCATGTTCTTTTGTG+TGG - tig0029330:15517-15536 None:intergenic 30.0%
GATTCCAACCTATTAAAACT+TGG - tig0029330:15589-15608 None:intergenic 30.0%
! GCGACATGAAAAAACATTTT+TGG - tig0029330:15872-15891 None:intergenic 30.0%
CTTATATTCTTCCACATGTT+GGG + tig0029330:15899-15918 Msa1441570:intron 30.0%
!! TTTGTTTTCCTGTGAAAAAC+AGG + tig0029330:16117-16136 Msa1441570:intron 30.0%
AAGCAAAAACAGAATCAATG+CGG - tig0029330:16252-16271 None:intergenic 30.0%
! TCTTTTATTGAAGCTTGCAA+AGG + tig0029330:16277-16296 Msa1441570:CDS 30.0%
GTTCTTCAAACTTATGAATG+AGG + tig0029330:16511-16530 Msa1441570:CDS 30.0%
! TCGATTTGAACAAAAAGTTG+AGG - tig0029330:16865-16884 None:intergenic 30.0%
TTCTACTTGATTGTATGGAT+TGG + tig0029330:17057-17076 Msa1441570:intron 30.0%
TCTACTTGATTGTATGGATT+GGG + tig0029330:17058-17077 Msa1441570:intron 30.0%
! AGATTATCTTCAGGTTTACT+GGG - tig0029330:17393-17412 None:intergenic 30.0%
!!! ATAAAAGGGTGCTATTTTTC+TGG + tig0029330:17478-17497 Msa1441570:intron 30.0%
GTTCTTTGCATGTAATGAAA+TGG - tig0029330:17680-17699 None:intergenic 30.0%
AATTCAAAGATCACTTACAG+AGG - tig0029330:17736-17755 None:intergenic 30.0%
AAGACAATTTCAATCAGCTT+TGG - tig0029330:17927-17946 None:intergenic 30.0%
ACATGCACAAATAAGATAGT+TGG + tig0029330:18085-18104 Msa1441570:intron 30.0%
!! CTTTTAAGAAAGAAAGCAAC+AGG - tig0029330:18113-18132 None:intergenic 30.0%
TTGCTTTCTTTCTTAAAAGC+TGG + tig0029330:18114-18133 Msa1441570:intron 30.0%
! TGGATGCATCTAATTTTGTA+TGG + tig0029330:18236-18255 Msa1441570:intron 30.0%
AATAAATTTCATCCGACAAG+TGG - tig0029330:18339-18358 None:intergenic 30.0%
CTTAGCATATTGCAAAAGTT+AGG + tig0029330:18508-18527 Msa1441570:CDS 30.0%
CATCAGAAATCTTCAATCTT+TGG + tig0029330:18536-18555 Msa1441570:CDS 30.0%
AAGTATGGAGTAAGTAATTG+AGG - tig0029330:18651-18670 None:intergenic 30.0%
TGCAATGTGAAAACAAAGTA+TGG - tig0029330:18666-18685 None:intergenic 30.0%
!!! ACTTGTGACTATTTTTATGC+AGG + tig0029330:18731-18750 Msa1441570:intron 30.0%
!!! CTTGTGACTATTTTTATGCA+GGG + tig0029330:18732-18751 Msa1441570:intron 30.0%
CAATAGTAGAGAAACAGAAA+TGG - tig0029330:19017-19036 None:intergenic 30.0%
ACTTAGAAAATTGACTGATC+AGG + tig0029330:19195-19214 Msa1441570:CDS 30.0%
!!! TTTCTTTTTTGCATGCAGAT+TGG - tig0029330:19295-19314 None:intergenic 30.0%
AATCTGCATGCAAAAAAGAA+AGG + tig0029330:19294-19313 Msa1441570:intron 30.0%
!! ATTTCTAGCAATAACGAACT+TGG - tig0029330:19360-19379 None:intergenic 30.0%
! CCTCACAAAATTGACTTATA+AGG - tig0029330:19587-19606 None:intergenic 30.0%
! CCTTATAAGTCAATTTTGTG+AGG + tig0029330:19584-19603 Msa1441570:intron 30.0%
GAAACTAATTACGAAGTTTC+AGG - tig0029330:19621-19640 None:intergenic 30.0%
!! AAACTTGTTTTCCTTTCTCT+TGG + tig0029330:19952-19971 Msa1441570:intron 30.0%
GAAACCTTTAACATGCTTTA+AGG - tig0029330:20225-20244 None:intergenic 30.0%
ATAAGAGAACTCAAGTGTTT+GGG - tig0029330:20360-20379 None:intergenic 30.0%
CTTCATCTCTTACAAAGAAT+GGG - tig0029330:20545-20564 None:intergenic 30.0%
TCTTCATCTCTTACAAAGAA+TGG - tig0029330:20546-20565 None:intergenic 30.0%
ATTCTTTGTAAGAGATGAAG+AGG + tig0029330:20545-20564 Msa1441570:intron 30.0%
TTCTTTGTAAGAGATGAAGA+GGG + tig0029330:20546-20565 Msa1441570:intron 30.0%
ATACGTTCATCTAAAAAGGA+AGG - tig0029330:20733-20752 None:intergenic 30.0%
! ATAGTTTGGGTTTACTATGT+TGG - tig0029330:21148-21167 None:intergenic 30.0%
! CTAGTTAGTTTACTGACAGA+CGG - tig0029330:13029-13048 None:intergenic 35.0%
GTCTGTCAGTAAACTAACTA+GGG + tig0029330:13028-13047 Msa1441570:five_prime_UTR 35.0%
! GGTTTAGTTTAGAAGAGAGA+TGG + tig0029330:13049-13068 Msa1441570:exon 35.0%
AAGGAAGTTGAGGTAAAAAG+AGG - tig0029330:13343-13362 None:intergenic 35.0%
ATAGCATACCTCAAAAGAGA+AGG - tig0029330:13362-13381 None:intergenic 35.0%
TTGAACCCTGAAAATGGAAT+GGG - tig0029330:13441-13460 None:intergenic 35.0%
!! CGGAATGAAGAATAGTTTTG+AGG - tig0029330:13475-13494 None:intergenic 35.0%
TTGATCCAATCAAGAAGATG+GGG - tig0029330:13515-13534 None:intergenic 35.0%
GTTTGATCCAATCAAGAAGA+TGG - tig0029330:13517-13536 None:intergenic 35.0%
TGTCTCGTGAATAATGTGAT+AGG - tig0029330:13639-13658 None:intergenic 35.0%
AAATGTATTCAGTGCTTGGA+TGG + tig0029330:13875-13894 Msa1441570:CDS 35.0%
! GTTGGTGGAAACTCAAAAAA+TGG + tig0029330:13976-13995 Msa1441570:CDS 35.0%
TTCTAAACAGACTCTACACT+CGG + tig0029330:14009-14028 Msa1441570:CDS 35.0%
ATGTTTCACAAGCATTATGC+GGG + tig0029330:14159-14178 Msa1441570:CDS 35.0%
ATGAAATGACACCACTAAAG+AGG - tig0029330:14307-14326 None:intergenic 35.0%
CATTTAACAGAGCAGCTAAT+AGG - tig0029330:14356-14375 None:intergenic 35.0%
CTATTAGCTGCTCTGTTAAA+TGG + tig0029330:14354-14373 Msa1441570:intron 35.0%
TATCATTGAAGCACATGAGA+GGG - tig0029330:14528-14547 None:intergenic 35.0%
TTATCATTGAAGCACATGAG+AGG - tig0029330:14529-14548 None:intergenic 35.0%
AAGATCCACATGAGTATGTT+AGG + tig0029330:14569-14588 Msa1441570:CDS 35.0%
! AAGGCTATGGTAAGTCTTAT+TGG + tig0029330:14593-14612 Msa1441570:intron 35.0%
TTGAAGACTTGTATAGTCCT+AGG + tig0029330:14696-14715 Msa1441570:CDS 35.0%
CAACTCACTCATAAAATCCA+CGG - tig0029330:14729-14748 None:intergenic 35.0%
CTATAAGACCTGTATTCTAC+TGG - tig0029330:14905-14924 None:intergenic 35.0%
! CAGTAGAATACAGGTCTTAT+AGG + tig0029330:14903-14922 Msa1441570:CDS 35.0%
CGCTCAAGTTCAGATTTATA+GGG - tig0029330:14989-15008 None:intergenic 35.0%
ACGCTCAAGTTCAGATTTAT+AGG - tig0029330:14990-15009 None:intergenic 35.0%
TGTGTGTGGATATTGTGAAA+TGG - tig0029330:15173-15192 None:intergenic 35.0%
ATTTCACAATATCCACACAC+AGG + tig0029330:15172-15191 Msa1441570:intron 35.0%
TTTCACAATATCCACACACA+GGG + tig0029330:15173-15192 Msa1441570:intron 35.0%
!! GGCCTACAAATTTGTTAAGA+CGG - tig0029330:15199-15218 None:intergenic 35.0%
GCCCAGATATAGTCTTTAAA+GGG + tig0029330:15216-15235 Msa1441570:intron 35.0%
ATGAAAAAAACACACTGGTG+AGG + tig0029330:15295-15314 Msa1441570:intron 35.0%
TCCGTATCCGATAAATGATT+TGG + tig0029330:15542-15561 Msa1441570:intron 35.0%
CCCAAATCATTTATCGGATA+CGG - tig0029330:15546-15565 None:intergenic 35.0%
CCGTATCCGATAAATGATTT+GGG + tig0029330:15543-15562 Msa1441570:intron 35.0%
GTAGCACCCAAATCATTTAT+CGG - tig0029330:15552-15571 None:intergenic 35.0%
! ATTTGGGTGCTACAAAAGTT+GGG + tig0029330:15559-15578 Msa1441570:intron 35.0%
!! GCATCCAAGTTTTAATAGGT+TGG + tig0029330:15582-15601 Msa1441570:intron 35.0%
GTGTACATTTACATTTCAGC+AGG - tig0029330:15850-15869 None:intergenic 35.0%
CATGTGGAAGAATATAAGGT+TGG - tig0029330:15897-15916 None:intergenic 35.0%
CCAACATGTGGAAGAATATA+AGG - tig0029330:15901-15920 None:intergenic 35.0%
CCTTATATTCTTCCACATGT+TGG + tig0029330:15898-15917 Msa1441570:intron 35.0%
TCTCAGATCAGAACAATTTC+CGG + tig0029330:16176-16195 Msa1441570:CDS 35.0%
TTTATTGAAGCTTGCAAAGG+TGG + tig0029330:16280-16299 Msa1441570:CDS 35.0%
TGGTACGTGCATGAAAAAAT+TGG + tig0029330:16430-16449 Msa1441570:intron 35.0%
TGAAGACCTTGTGTTTACTT+TGG + tig0029330:16541-16560 Msa1441570:CDS 35.0%
TAGTCTCCAAAGTAAACACA+AGG - tig0029330:16550-16569 None:intergenic 35.0%
! GTTTACTTTGGAGACTATTG+TGG + tig0029330:16553-16572 Msa1441570:CDS 35.0%
CAAAACAAGGACATCATTCT+TGG - tig0029330:16664-16683 None:intergenic 35.0%
!! CAAGAATGATGTCCTTGTTT+TGG + tig0029330:16662-16681 Msa1441570:intron 35.0%
!!! AATGATGTCCTTGTTTTGGA+TGG + tig0029330:16666-16685 Msa1441570:intron 35.0%
AATACTAGCCATCCAAAACA+AGG - tig0029330:16677-16696 None:intergenic 35.0%
GTTAACATGCTACGCATTAT+GGG - tig0029330:16901-16920 None:intergenic 35.0%
TGTTAACATGCTACGCATTA+TGG - tig0029330:16902-16921 None:intergenic 35.0%
TGTTTATCTGAATGACTCTG+AGG + tig0029330:16953-16972 Msa1441570:intron 35.0%
GGAGATTCTACTTGATTGTA+TGG + tig0029330:17052-17071 Msa1441570:intron 35.0%
! CTACTTGATTGTATGGATTG+GGG + tig0029330:17059-17078 Msa1441570:intron 35.0%
TTTCTCTCCAACAATATCAC+TGG + tig0029330:17177-17196 Msa1441570:CDS 35.0%
!!! CAAAGTACTGAACTTTTGGA+AGG - tig0029330:17317-17336 None:intergenic 35.0%
CTTCCAAAAGTTCAGTACTT+TGG + tig0029330:17315-17334 Msa1441570:intron 35.0%
!!! AGTCCAAAGTACTGAACTTT+TGG - tig0029330:17321-17340 None:intergenic 35.0%
! GAGATTATCTTCAGGTTTAC+TGG - tig0029330:17394-17413 None:intergenic 35.0%
TGCAGATATTATGGTTCCTT+TGG + tig0029330:17629-17648 Msa1441570:intron 35.0%
ATTGAACGTTTGCATAGAAC+TGG + tig0029330:18002-18021 Msa1441570:CDS 35.0%
GAAATGTCTTCTCATTCAAG+TGG + tig0029330:18037-18056 Msa1441570:CDS 35.0%
! CTTAAAAGCTGGATTTTCGA+TGG + tig0029330:18125-18144 Msa1441570:intron 35.0%
! CATGGGTTGAAAAGAAAACA+TGG - tig0029330:18160-18179 None:intergenic 35.0%
ACCAAATGCAACTTCATAAG+AGG + tig0029330:18433-18452 Msa1441570:intron 35.0%
TCCTCTTATGAAGTTGCATT+TGG - tig0029330:18437-18456 None:intergenic 35.0%
CAATATGCTAAGAGTCAATG+TGG - tig0029330:18500-18519 None:intergenic 35.0%
! GTGTGCGTGCTAATTTTAAA+AGG + tig0029330:18590-18609 Msa1441570:CDS 35.0%
TATTGTGTGTAGCTATGTGA+AGG + tig0029330:18694-18713 Msa1441570:intron 35.0%
!!! CTATTTTTATGCAGGGAACA+TGG + tig0029330:18739-18758 Msa1441570:intron 35.0%
AGAAAATGACGACGATGATA+TGG + tig0029330:19075-19094 Msa1441570:CDS 35.0%
! TCAAACTGATGATGAAGATG+AGG + tig0029330:19105-19124 Msa1441570:CDS 35.0%
AGTCTTCGGAATTATATCCA+CGG - tig0029330:19222-19241 None:intergenic 35.0%
GCAAATGTTCTTTGAGTCTT+CGG - tig0029330:19236-19255 None:intergenic 35.0%
AAATGGCGAATACTTCTACT+GGG - tig0029330:19749-19768 None:intergenic 35.0%
AAAATGGCGAATACTTCTAC+TGG - tig0029330:19750-19769 None:intergenic 35.0%
TAGTTCAGTGAACCTACATA+AGG + tig0029330:19821-19840 Msa1441570:intron 35.0%
CATTTGCAATGTCATCCAAT+AGG + tig0029330:20066-20085 Msa1441570:intron 35.0%
AAGGATCCACTTCATCAATT+GGG - tig0029330:20159-20178 None:intergenic 35.0%
AAAGGATCCACTTCATCAAT+TGG - tig0029330:20160-20179 None:intergenic 35.0%
TGCACCTTAAAGCATGTTAA+AGG + tig0029330:20218-20237 Msa1441570:intron 35.0%
GATAAGAGAACTCAAGTGTT+TGG - tig0029330:20361-20380 None:intergenic 35.0%
TCTTATCAAGCTCTTGCAAA+TGG + tig0029330:20374-20393 Msa1441570:CDS 35.0%
TGAGATTGAGAAGGAAAAGT+CGG + tig0029330:20427-20446 Msa1441570:CDS 35.0%
! ACCACAGATTCTTAAGCTTT+TGG + tig0029330:20464-20483 Msa1441570:exon 35.0%
TCCAAAAGCTTAAGAATCTG+TGG - tig0029330:20468-20487 None:intergenic 35.0%
GAGGGTTGCATATTTATTTC+AGG + tig0029330:20564-20583 Msa1441570:intron 35.0%
!! CAACATCCTCTGAAATCAAT+GGG - tig0029330:20677-20696 None:intergenic 35.0%
!!! ACTCCTTTTCACTTTTTTCG+TGG + tig0029330:20775-20794 Msa1441570:three_prime_UTR 35.0%
GATCCACGAAAAAAGTGAAA+AGG - tig0029330:20781-20800 None:intergenic 35.0%
AATTTACCCATCTATGTGAC+AGG - tig0029330:20908-20927 None:intergenic 35.0%
TGTCACATAGATGGGTAAAT+TGG + tig0029330:20907-20926 Msa1441570:three_prime_UTR 35.0%
GTCACATAGATGGGTAAATT+GGG + tig0029330:20908-20927 Msa1441570:three_prime_UTR 35.0%
TCACATAGATGGGTAAATTG+GGG + tig0029330:20909-20928 Msa1441570:three_prime_UTR 35.0%
AAATTGCCTATACCAACCAT+TGG - tig0029330:20938-20957 None:intergenic 35.0%
CACTGGATTTATACTCTCAA+CGG - tig0029330:21025-21044 None:intergenic 35.0%
TAGAAAAGTTATGGAGTGAC+TGG - tig0029330:21102-21121 None:intergenic 35.0%
CGTCTGTCAGTAAACTAACT+AGG + tig0029330:13027-13046 Msa1441570:five_prime_UTR 40.0%
TCCGAATCCGAATGAAAGAA+AGG + tig0029330:13106-13125 Msa1441570:CDS 40.0%
GCCTTTCTTTCATTCGGATT+CGG - tig0029330:13110-13129 None:intergenic 40.0%
TCAGCAGCCTTTCTTTCATT+CGG - tig0029330:13116-13135 None:intergenic 40.0%
AAAGAAAGGCTGCTGAACAA+AGG + tig0029330:13120-13139 Msa1441570:CDS 40.0%
GAAGATGATTGGGTGCATAT+TGG - tig0029330:13157-13176 None:intergenic 40.0%
TCGCCGATAAAGACTTTGTT+AGG + tig0029330:13306-13325 Msa1441570:CDS 40.0%
CTCAAAAGAGAAGGAAGTTG+AGG - tig0029330:13353-13372 None:intergenic 40.0%
! CTCAACTTCCTTCTCTTTTG+AGG + tig0029330:13351-13370 Msa1441570:CDS 40.0%
GTTGAACCCTGAAAATGGAA+TGG - tig0029330:13442-13461 None:intergenic 40.0%
!! TCCATTTTCAGGGTTCAACT+TGG + tig0029330:13443-13462 Msa1441570:intron 40.0%
! ACCAAGTTGAACCCTGAAAA+TGG - tig0029330:13447-13466 None:intergenic 40.0%
AAGAATGCGGAGAACGAATA+AGG - tig0029330:13573-13592 None:intergenic 40.0%
TCGTGAATAATGTGATAGGC+AGG - tig0029330:13635-13654 None:intergenic 40.0%
AGATCAGCTACTTGAATGGA+TGG - tig0029330:13710-13729 None:intergenic 40.0%
GATGAGATCAGCTACTTGAA+TGG - tig0029330:13714-13733 None:intergenic 40.0%
ATCCTGATCTTCGCAAATCA+TGG + tig0029330:13952-13971 Msa1441570:CDS 40.0%
TCCTGATCTTCGCAAATCAT+GGG + tig0029330:13953-13972 Msa1441570:CDS 40.0%
!!! GAGCAAATGCCTTGTTTTCA+GGG - tig0029330:14137-14156 None:intergenic 40.0%
!!! TGAGCAAATGCCTTGTTTTC+AGG - tig0029330:14138-14157 None:intergenic 40.0%
TGTTTCACAAGCATTATGCG+GGG + tig0029330:14160-14179 Msa1441570:CDS 40.0%
!! AGTAGGTTGATAACTCTGTC+AGG - tig0029330:14243-14262 None:intergenic 40.0%
CCTTTCCTAACATACTCATG+TGG - tig0029330:14577-14596 None:intergenic 40.0%
CCACATGAGTATGTTAGGAA+AGG + tig0029330:14574-14593 Msa1441570:CDS 40.0%
GAGTATGTTAGGAAAGGCTA+TGG + tig0029330:14580-14599 Msa1441570:CDS 40.0%
! CGTGGATTTTATGAGTGAGT+TGG + tig0029330:14727-14746 Msa1441570:CDS 40.0%
GTGCTTCATCATACCTAGAA+TGG - tig0029330:14883-14902 None:intergenic 40.0%
! ATGAAGCACCAGTAGAATAC+AGG + tig0029330:14894-14913 Msa1441570:CDS 40.0%
! AGGTCTTATAGGCAGAAAGA+TGG + tig0029330:14914-14933 Msa1441570:CDS 40.0%
!! ATGGAGCTCTTCTTGCTATT+GGG + tig0029330:14933-14952 Msa1441570:CDS 40.0%
TTGTATAGGAAACCGTACCT+TGG - tig0029330:15068-15087 None:intergenic 40.0%
GGCCGTCTTAACAAATTTGT+AGG + tig0029330:15194-15213 Msa1441570:intron 40.0%
GGCCCAGATATAGTCTTTAA+AGG + tig0029330:15215-15234 Msa1441570:intron 40.0%
ATCCGATTGCAATACTTCAG+AGG - tig0029330:15361-15380 None:intergenic 40.0%
! TTTGGGCCCCAAAAATTTTG+AGG + tig0029330:15446-15465 Msa1441570:intron 40.0%
! CATGTTCTTTTGTGTGGACA+GGG - tig0029330:15511-15530 None:intergenic 40.0%
! GATTTGGGTGCTACAAAAGT+TGG + tig0029330:15558-15577 Msa1441570:intron 40.0%
! TTTGGGTGCTACAAAAGTTG+GGG + tig0029330:15560-15579 Msa1441570:intron 40.0%
!! TGGGGCATCCAAGTTTTAAT+AGG + tig0029330:15578-15597 Msa1441570:intron 40.0%
TTCTTTCAAGGAAAGTCAGG+AGG - tig0029330:15720-15739 None:intergenic 40.0%
TCCTGACTTTCCTTGAAAGA+AGG + tig0029330:15719-15738 Msa1441570:intron 40.0%
ACCTTCTTTCAAGGAAAGTC+AGG - tig0029330:15723-15742 None:intergenic 40.0%
TCCTTGAAAGAAGGTAAGAG+AGG + tig0029330:15728-15747 Msa1441570:intron 40.0%
TCCTCTCTTACCTTCTTTCA+AGG - tig0029330:15732-15751 None:intergenic 40.0%
ACATGTTGGGTTATAGCCAA+GGG + tig0029330:15912-15931 Msa1441570:intron 40.0%
CTGATCTGAGAAGCTAATGT+GGG - tig0029330:16167-16186 None:intergenic 40.0%
TCTGATCTGAGAAGCTAATG+TGG - tig0029330:16168-16187 None:intergenic 40.0%
AGATCAGAACAATTTCCGGA+AGG + tig0029330:16180-16199 Msa1441570:CDS 40.0%
AAAACAGAATCAATGCGGAC+AGG - tig0029330:16247-16266 None:intergenic 40.0%
! TTTTCATGCACGTACCATCA+AGG - tig0029330:16427-16446 None:intergenic 40.0%
GAGACTATTGTGGACAAGTT+TGG + tig0029330:16563-16582 Msa1441570:CDS 40.0%
! GGACAAGTTTGGTGAAGAAA+TGG + tig0029330:16574-16593 Msa1441570:CDS 40.0%
AAATGGCACCTTATGCACTT+GGG + tig0029330:16591-16610 Msa1441570:CDS 40.0%
ACTTGGGCTATGCCAAAATT+TGG + tig0029330:16607-16626 Msa1441570:CDS 40.0%
GCTCTTTCCTTTCTCAACAA+AGG + tig0029330:16714-16733 Msa1441570:intron 40.0%
! CGCTGATGATTCAAGTTCAA+TGG + tig0029330:16783-16802 Msa1441570:CDS 40.0%
ATGTTAACAACCGATGGTCA+AGG + tig0029330:16913-16932 Msa1441570:CDS 40.0%
TAAGGGAATACCTTGACCAT+CGG - tig0029330:16926-16945 None:intergenic 40.0%
CACATGTCCAGTGATATTGT+TGG - tig0029330:17187-17206 None:intergenic 40.0%
CAACAATATCACTGGACATG+TGG + tig0029330:17185-17204 Msa1441570:CDS 40.0%
GATAGTGCTTCCATCATCAA+TGG - tig0029330:17220-17239 None:intergenic 40.0%
!! TGATGGAAGCACTATCAGAT+TGG + tig0029330:17224-17243 Msa1441570:CDS 40.0%
!! GATGGAAGCACTATCAGATT+GGG + tig0029330:17225-17244 Msa1441570:CDS 40.0%
CCATAGCTGAGATTATCTTC+AGG - tig0029330:17402-17421 None:intergenic 40.0%
CCTGAAGATAATCTCAGCTA+TGG + tig0029330:17399-17418 Msa1441570:intron 40.0%
ACTTAAATGTCAGAGCAACC+AGG - tig0029330:17551-17570 None:intergenic 40.0%
!! CACAAACACTGTTGATAGTC+AGG - tig0029330:17702-17721 None:intergenic 40.0%
CTGACTATCAACAGTGTTTG+TGG + tig0029330:17700-17719 Msa1441570:CDS 40.0%
ATTGTCTTCCTAAACTGCAG+AGG + tig0029330:17939-17958 Msa1441570:CDS 40.0%
GTCTTCTCATTCAAGTGGTA+AGG + tig0029330:18042-18061 Msa1441570:intron 40.0%
TCTTGACTTCTTGCAGCATT+TGG - tig0029330:18564-18583 None:intergenic 40.0%
AGTAAGTAATTGAGGCAAGG+AGG - tig0029330:18643-18662 None:intergenic 40.0%
TGGAGTAAGTAATTGAGGCA+AGG - tig0029330:18646-18665 None:intergenic 40.0%
TCCTCAACATGTCAGAGTTA+CGG - tig0029330:18954-18973 None:intergenic 40.0%
AATGACGACGATGATATGGA+CGG + tig0029330:19079-19098 Msa1441570:CDS 40.0%
!! TTAAGCAAAAGTTCTGGGCA+GGG - tig0029330:19709-19728 None:intergenic 40.0%
!! TTTAAGCAAAAGTTCTGGGC+AGG - tig0029330:19710-19729 None:intergenic 40.0%
ATCGGTTAAGCACCTTATGT+AGG - tig0029330:19836-19855 None:intergenic 40.0%
CACAAAATTGTGTAGCTGGA+TGG - tig0029330:19867-19886 None:intergenic 40.0%
! CATCCAGCTACACAATTTTG+TGG + tig0029330:19865-19884 Msa1441570:intron 40.0%
CAACCACAAAATTGTGTAGC+TGG - tig0029330:19871-19890 None:intergenic 40.0%
! AATTTTGTGGTTGAACCAGC+TGG + tig0029330:19878-19897 Msa1441570:intron 40.0%
TCCAATAGGAAACGTCATTC+AGG + tig0029330:20080-20099 Msa1441570:intron 40.0%
AGGATCCACTTCATCAATTG+GGG - tig0029330:20158-20177 None:intergenic 40.0%
!! CATGCTTTAAGGTGCAGTAT+CGG - tig0029330:20214-20233 None:intergenic 40.0%
TGCAATCATCAGATCCAATG+AGG + tig0029330:20321-20340 Msa1441570:CDS 40.0%
!!! GTCAGGTTTTGAAACCTCAT+TGG - tig0029330:20338-20357 None:intergenic 40.0%
! AGCTTTTGGATGTACGTTGT+TGG + tig0029330:20478-20497 Msa1441570:intron 40.0%
TCTTACAAAGAATGGGTGCA+AGG - tig0029330:20538-20557 None:intergenic 40.0%
!! CCAACATCCTCTGAAATCAA+TGG - tig0029330:20678-20697 None:intergenic 40.0%
!! CCATTGATTTCAGAGGATGT+TGG + tig0029330:20675-20694 Msa1441570:three_prime_UTR 40.0%
TTTCAGAGGATGTTGGATTC+AGG + tig0029330:20682-20701 Msa1441570:three_prime_UTR 40.0%
ATGTTGGATTCAGGAAACTG+TGG + tig0029330:20691-20710 Msa1441570:three_prime_UTR 40.0%
GAAAAGGAGTAGAACAACGA+CGG - tig0029330:20765-20784 None:intergenic 40.0%
TCTTCTACCTGTCACATAGA+TGG + tig0029330:20898-20917 Msa1441570:three_prime_UTR 40.0%
CTTCTACCTGTCACATAGAT+GGG + tig0029330:20899-20918 Msa1441570:three_prime_UTR 40.0%
CTGTTAAACGCATTGCTGAT+GGG - tig0029330:21048-21067 None:intergenic 40.0%
GTGAAGCAAAGAAGAGGAAG+TGG + tig0029330:12920-12939 Msa1441570:five_prime_UTR 45.0%
CAAAGAAGAGGAAGTGGAGT+GGG + tig0029330:12926-12945 Msa1441570:five_prime_UTR 45.0%
AAAGAAGAGGAAGTGGAGTG+GGG + tig0029330:12927-12946 Msa1441570:five_prime_UTR 45.0%
AGTTTACTGACAGACGGAGA+GGG - tig0029330:13023-13042 None:intergenic 45.0%
TAGTTTACTGACAGACGGAG+AGG - tig0029330:13024-13043 None:intergenic 45.0%
AAAGGCTGCTGAACAAAGGT+TGG + tig0029330:13124-13143 Msa1441570:CDS 45.0%
GAAAGAGATTGAGTGAGCAG+TGG - tig0029330:13288-13307 None:intergenic 45.0%
AATCAAGAAGATGGGGACAG+TGG - tig0029330:13508-13527 None:intergenic 45.0%
ACTGTCCCCATCTTCTTGAT+TGG + tig0029330:13507-13526 Msa1441570:CDS 45.0%
GAATGGATGGATCAGGAATC+TGG - tig0029330:13697-13716 None:intergenic 45.0%
GCTACTTGAATGGATGGATC+AGG - tig0029330:13704-13723 None:intergenic 45.0%
TTGCGAAGATCAGGATCAAC+AGG - tig0029330:13948-13967 None:intergenic 45.0%
CCTGATCTTCGCAAATCATG+GGG + tig0029330:13954-13973 Msa1441570:CDS 45.0%
ATCTTCGCAAATCATGGGGT+TGG + tig0029330:13958-13977 Msa1441570:CDS 45.0%
! GCATTATGCGGGGAAGATTT+TGG + tig0029330:14170-14189 Msa1441570:CDS 45.0%
CTGTTGAATGTCATTCGAGC+AGG + tig0029330:14207-14226 Msa1441570:CDS 45.0%
TTGAATGTCATTCGAGCAGG+TGG + tig0029330:14210-14229 Msa1441570:CDS 45.0%
AAAAGAAGAACGTCAAGCCG+AGG - tig0029330:14493-14512 None:intergenic 45.0%
CTCACTCATAAAATCCACGG+AGG - tig0029330:14726-14745 None:intergenic 45.0%
! GATGGAGCTCTTCTTGCTAT+TGG + tig0029330:14932-14951 Msa1441570:CDS 45.0%
GAAGCTTGTGTTTGGGTGTA+TGG - tig0029330:15334-15353 None:intergenic 45.0%
ATTGCAATACTTCAGAGGCG+CGG - tig0029330:15356-15375 None:intergenic 45.0%
!! CGCCTCTGAAGTATTGCAAT+CGG + tig0029330:15356-15375 Msa1441570:intron 45.0%
! ACCGGGCCTCAAAATTTTTG+GGG - tig0029330:15455-15474 None:intergenic 45.0%
! CACCGGGCCTCAAAATTTTT+GGG - tig0029330:15456-15475 None:intergenic 45.0%
! TCACCGGGCCTCAAAATTTT+TGG - tig0029330:15457-15476 None:intergenic 45.0%
! GCATGTTCTTTTGTGTGGAC+AGG - tig0029330:15512-15531 None:intergenic 45.0%
!!! TTTTTTTCATCGCACGGGTG+TGG + tig0029330:15678-15697 Msa1441570:intron 45.0%
CTTGGCTATAACCCAACATG+TGG - tig0029330:15913-15932 None:intergenic 45.0%
CACATGTTGGGTTATAGCCA+AGG + tig0029330:15911-15930 Msa1441570:intron 45.0%
!! GCACTAGCTCTACTTCAATG+AGG - tig0029330:15942-15961 None:intergenic 45.0%
CAACACATTGCAATGCCTTC+CGG - tig0029330:16198-16217 None:intergenic 45.0%
GCATTGCAATGTGTTGTCTG+TGG + tig0029330:16202-16221 Msa1441570:CDS 45.0%
GAAATGGCACCTTATGCACT+TGG + tig0029330:16590-16609 Msa1441570:CDS 45.0%
! CAACAAAGGCTGCTGCATTT+TGG + tig0029330:16728-16747 Msa1441570:intron 45.0%
TCAAGTTCAATGGCTGCAGT+TGG + tig0029330:16793-16812 Msa1441570:CDS 45.0%
CGTAGCATGTTAACAACCGA+TGG + tig0029330:16907-16926 Msa1441570:CDS 45.0%
ACTTCTACGCATGCTTACAG+AGG + tig0029330:17114-17133 Msa1441570:intron 45.0%
GAACCTTTGGCCATTGATGA+TGG + tig0029330:17207-17226 Msa1441570:CDS 45.0%
CTTCCATCATCAATGGCCAA+AGG - tig0029330:17213-17232 None:intergenic 45.0%
! GTGCGTGGGTTATAAGAAGT+TGG + tig0029330:18216-18235 Msa1441570:intron 45.0%
AACTGCTACGAACCACTTGT+CGG + tig0029330:18324-18343 Msa1441570:intron 45.0%
CTGCAAGAAGTCAAGAAGAG+TGG + tig0029330:18568-18587 Msa1441570:CDS 45.0%
AGTAATTGAGGCAAGGAGGA+GGG - tig0029330:18639-18658 None:intergenic 45.0%
AAGTAATTGAGGCAAGGAGG+AGG - tig0029330:18640-18659 None:intergenic 45.0%
CCAGCAAGGATGTTAAACCA+AGG - tig0029330:18780-18799 None:intergenic 45.0%
CCTTGGTTTAACATCCTTGC+TGG + tig0029330:18777-18796 Msa1441570:CDS 45.0%
TGATCTCCTGGTTGCATACA+AGG + tig0029330:18858-18877 Msa1441570:CDS 45.0%
CTTGATCCTTGTATGCAACC+AGG - tig0029330:18867-18886 None:intergenic 45.0%
! GCATACAAGGATCAAGTTGC+AGG + tig0029330:18871-18890 Msa1441570:CDS 45.0%
TCCGTAACTCTGACATGTTG+AGG + tig0029330:18950-18969 Msa1441570:intron 45.0%
GATGAAGATGAGGATGACAG+TGG + tig0029330:19115-19134 Msa1441570:CDS 45.0%
!! AGTGGTTCTGACAGGGAAAT+GGG + tig0029330:19133-19152 Msa1441570:CDS 45.0%
ATGGGAACTGATGCTGAAGA+TGG + tig0029330:19151-19170 Msa1441570:CDS 45.0%
TGGGAACTGATGCTGAAGAT+GGG + tig0029330:19152-19171 Msa1441570:CDS 45.0%
AAATTGACTGATCAGGTCCG+TGG + tig0029330:19202-19221 Msa1441570:intron 45.0%
AAAGGTTGCAATCTGCACAC+AGG + tig0029330:19312-19331 Msa1441570:intron 45.0%
AGCTGGATGGTTTACTGGAT+CGG - tig0029330:19854-19873 None:intergenic 45.0%
TGTGTAGCTGGATGGTTTAC+TGG - tig0029330:19859-19878 None:intergenic 45.0%
ATAGTTCGACACAAACCAGC+TGG - tig0029330:19896-19915 None:intergenic 45.0%
GCCTGAATGACGTTTCCTAT+TGG - tig0029330:20084-20103 None:intergenic 45.0%
TCATCTGAGTCCTCATCATC+GGG - tig0029330:20106-20125 None:intergenic 45.0%
GTCATCTGAGTCCTCATCAT+CGG - tig0029330:20107-20126 None:intergenic 45.0%
ACAGTCCCCAATTGATGAAG+TGG + tig0029330:20150-20169 Msa1441570:CDS 45.0%
AGAACTCAAGTGTTTGGGTC+AGG - tig0029330:20355-20374 None:intergenic 45.0%
GAGAAGAGGTGAGATTGAGA+AGG + tig0029330:20418-20437 Msa1441570:CDS 45.0%
! CAGGCATTTATTTGGCTCAG+CGG + tig0029330:20583-20602 Msa1441570:intron 45.0%
! AGCGGTCAAAGTTGGTCTAT+GGG + tig0029330:20601-20620 Msa1441570:three_prime_UTR 45.0%
!! GAGGTTCCCATTGATTTCAG+AGG + tig0029330:20668-20687 Msa1441570:three_prime_UTR 45.0%
TTTCGTGGATCCTTCCTTTC+AGG + tig0029330:20790-20809 Msa1441570:three_prime_UTR 45.0%
ACTTGGCATGGAAACCTGAA+AGG - tig0029330:20807-20826 None:intergenic 45.0%
GGTTTCCATGCCAAGTTTCA+CGG + tig0029330:20811-20830 Msa1441570:three_prime_UTR 45.0%
ATGCTGGAAACCGTGAAACT+TGG - tig0029330:20824-20843 None:intergenic 45.0%
GTTTCACGGTTTCCAGCATA+TGG + tig0029330:20825-20844 Msa1441570:three_prime_UTR 45.0%
GAAGCCATTGCTGCACTAAT+CGG - tig0029330:20859-20878 None:intergenic 45.0%
CCTGTTAAACGCATTGCTGA+TGG - tig0029330:21049-21068 None:intergenic 45.0%
CCATCAGCAATGCGTTTAAC+AGG + tig0029330:21046-21065 Msa1441570:three_prime_UTR 45.0%
AAAGTTATGGAGTGACTGGC+TGG - tig0029330:21098-21117 None:intergenic 45.0%
!!! AATATATTTTTTTGTATTTA+AGG - tig0029330:15427-15446 None:intergenic 5.0%
!!! AAATACAAAAAAATATATTT+TGG + tig0029330:15428-15447 Msa1441570:intron 5.0%
!!! AATACAAAAAAATATATTTT+GGG + tig0029330:15429-15448 Msa1441570:intron 5.0%
GCGAGTGTGAAGCAAAGAAG+AGG + tig0029330:12914-12933 Msa1441570:five_prime_UTR 50.0%
GCAAAGAAGAGGAAGTGGAG+TGG + tig0029330:12925-12944 Msa1441570:five_prime_UTR 50.0%
TTGTACAGCTAGCTGAGCTG+AGG + tig0029330:12963-12982 Msa1441570:five_prime_UTR 50.0%
AATGGCGGCAACTTGTCTGA+GGG - tig0029330:13231-13250 None:intergenic 50.0%
AGTGCGAGTGCAATGGAGAA+TGG - tig0029330:13393-13412 None:intergenic 50.0%
AAGAAGATGGGGACAGTGGT+CGG - tig0029330:13504-13523 None:intergenic 50.0%
TCAACAGGCTGACCTTCCAA+GGG - tig0029330:13933-13952 None:intergenic 50.0%
ATCAACAGGCTGACCTTCCA+AGG - tig0029330:13934-13953 None:intergenic 50.0%
! CCCCATGATTTGCGAAGATC+AGG - tig0029330:13957-13976 None:intergenic 50.0%
TTCGCAAATCATGGGGTTGG+TGG + tig0029330:13961-13980 Msa1441570:CDS 50.0%
GCTGCGAAACCCTGAAAACA+AGG + tig0029330:14125-14144 Msa1441570:CDS 50.0%
! GAGCAGCTAATAGGTGTCAC+AGG - tig0029330:14347-14366 None:intergenic 50.0%
TGTATACTGTGCTGCAGCCT+CGG + tig0029330:14473-14492 Msa1441570:CDS 50.0%
!! TGAGTTGGTTCGAAAGCGCA+GGG + tig0029330:14742-14761 Msa1441570:CDS 50.0%
CAACACGTCTTTCCCGAGTT+TGG + tig0029330:15019-15038 Msa1441570:CDS 50.0%
CAGTCCTGTTGGCCATCTTA+GGG + tig0029330:15042-15061 Msa1441570:CDS 50.0%
!!! GCCCCAAAAATTTTGAGGCC+CGG + tig0029330:15451-15470 Msa1441570:intron 50.0%
! TTCTTTTGTGTGGACAGGGC+TGG - tig0029330:15507-15526 None:intergenic 50.0%
CTGTGAAAAACAGGCAGCGT+GGG + tig0029330:16126-16145 Msa1441570:intron 50.0%
TCAATGCGGACAGGTAGTTC+AGG - tig0029330:16238-16257 None:intergenic 50.0%
ACGTACCATCAAGGAGCGAA+GGG - tig0029330:16418-16437 None:intergenic 50.0%
TGGCATAGCCCAAGTGCATA+AGG - tig0029330:16602-16621 None:intergenic 50.0%
GCAGCAGCCTTTGTTGAGAA+AGG - tig0029330:16724-16743 None:intergenic 50.0%
! CAAAGGCTGCTGCATTTTGG+AGG + tig0029330:16731-16750 Msa1441570:intron 50.0%
CGCATTATGGGAAGCAAGGT+AGG - tig0029330:16889-16908 None:intergenic 50.0%
GCTACGCATTATGGGAAGCA+AGG - tig0029330:16893-16912 None:intergenic 50.0%
CACTGGACATGTGGAACCTT+TGG + tig0029330:17194-17213 Msa1441570:CDS 50.0%
TAATTTGGCCACCACCTGTC+AGG + tig0029330:17764-17783 Msa1441570:intron 50.0%
CTTCCTAAACTGCAGAGGAC+TGG + tig0029330:17944-17963 Msa1441570:CDS 50.0%
TACGAGCTACAACAAGTGCG+TGG + tig0029330:18201-18220 Msa1441570:intron 50.0%
ACGAGCTACAACAAGTGCGT+GGG + tig0029330:18202-18221 Msa1441570:intron 50.0%
!! GGCAAGAAAGTTTGCTGCCT+TGG + tig0029330:18760-18779 Msa1441570:CDS 50.0%
CTTCCAGCTGATCAATTGCC+AGG + tig0029330:18802-18821 Msa1441570:CDS 50.0%
TCTCCTGGCAATTGATCAGC+TGG - tig0029330:18808-18827 None:intergenic 50.0%
AGCTGATCAATTGCCAGGAG+AGG + tig0029330:18807-18826 Msa1441570:CDS 50.0%
CAATTGCCAGGAGAGGCTTT+AGG + tig0029330:18814-18833 Msa1441570:CDS 50.0%
TGCAACCAGGAGATCAAGAG+TGG - tig0029330:18854-18873 None:intergenic 50.0%
CTTTGCAGAAGCTGCAGAAG+AGG + tig0029330:19039-19058 Msa1441570:intron 50.0%
!! AGGATGACAGTGGTTCTGAC+AGG + tig0029330:19125-19144 Msa1441570:CDS 50.0%
!! GGATGACAGTGGTTCTGACA+GGG + tig0029330:19126-19145 Msa1441570:CDS 50.0%
!! CAGTGGTTCTGACAGGGAAA+TGG + tig0029330:19132-19151 Msa1441570:CDS 50.0%
GGGAACTGATGCTGAAGATG+GGG + tig0029330:19153-19172 Msa1441570:CDS 50.0%
GGGCAGGGAATCATACCTAA+TGG - tig0029330:19694-19713 None:intergenic 50.0%
TCTTCTCGTCTCAGCATGCT+GGG - tig0029330:20405-20424 None:intergenic 50.0%
! TTTGGCTCAGCGGTCAAAGT+TGG + tig0029330:20593-20612 Msa1441570:three_prime_UTR 50.0%
! CAGCGGTCAAAGTTGGTCTA+TGG + tig0029330:20600-20619 Msa1441570:three_prime_UTR 50.0%
CCTCAGCATACTAAACTCGC+AGG - tig0029330:20652-20671 None:intergenic 50.0%
CCTGCGAGTTTAGTATGCTG+AGG + tig0029330:20649-20668 Msa1441570:three_prime_UTR 50.0%
ACTGTGGAGTTTAGCGCTTC+TGG + tig0029330:20707-20726 Msa1441570:three_prime_UTR 50.0%
GGCATGGAAACCTGAAAGGA+AGG - tig0029330:20803-20822 None:intergenic 50.0%
GGAAACCGTGAAACTTGGCA+TGG - tig0029330:20819-20838 None:intergenic 50.0%
TCGGACAGGATTCCATATGC+TGG - tig0029330:20840-20859 None:intergenic 50.0%
CATTGCTGCACTAATCGGAC+AGG - tig0029330:20854-20873 None:intergenic 50.0%
CTGTCCGATTAGTGCAGCAA+TGG + tig0029330:20852-20871 Msa1441570:three_prime_UTR 50.0%
AAATTGGGGCTGCCAATGGT+TGG + tig0029330:20923-20942 Msa1441570:three_prime_UTR 50.0%
AGCTAGCTGAGCTGAGGAAG+AGG + tig0029330:12969-12988 Msa1441570:five_prime_UTR 55.0%
GCTAGCTGAGCTGAGGAAGA+GGG + tig0029330:12970-12989 Msa1441570:five_prime_UTR 55.0%
CTAGCTGAGCTGAGGAAGAG+GGG + tig0029330:12971-12990 Msa1441570:five_prime_UTR 55.0%
GAATGGCGGCAACTTGTCTG+AGG - tig0029330:13232-13251 None:intergenic 55.0%
GGGACAGTGGTCGGGATAAT+CGG - tig0029330:13495-13514 None:intergenic 55.0%
AGAAGATGGGGACAGTGGTC+GGG - tig0029330:13503-13522 None:intergenic 55.0%
ATTGGAGAGGCCTGTTCCCT+TGG + tig0029330:13914-13933 Msa1441570:CDS 55.0%
AAATCCACGGAGGCAGTCCT+AGG - tig0029330:14716-14735 None:intergenic 55.0%
!! GTGAGTTGGTTCGAAAGCGC+AGG + tig0029330:14741-14760 Msa1441570:CDS 55.0%
CCAACAGGACTGCCAAACTC+GGG - tig0029330:15034-15053 None:intergenic 55.0%
GCCAACAGGACTGCCAAACT+CGG - tig0029330:15035-15054 None:intergenic 55.0%
GCAGTCCTGTTGGCCATCTT+AGG + tig0029330:15041-15060 Msa1441570:CDS 55.0%
TTGGCCCTAAGATGGCCAAC+AGG - tig0029330:15049-15068 None:intergenic 55.0%
TGTTGGCCATCTTAGGGCCA+AGG + tig0029330:15048-15067 Msa1441570:CDS 55.0%
GCCATCTTAGGGCCAAGGTA+CGG + tig0029330:15053-15072 Msa1441570:intron 55.0%
ACCGTACCTTGGCCCTAAGA+TGG - tig0029330:15057-15076 None:intergenic 55.0%
TGTTAAGACGGCCCTGTGTG+TGG - tig0029330:15187-15206 None:intergenic 55.0%
AGGCGCGGAAGCTTGTGTTT+GGG - tig0029330:15341-15360 None:intergenic 55.0%
ACTTCAATGAGGCTCGCCCT+TGG - tig0029330:15931-15950 None:intergenic 55.0%
!! CCACGCTGCCTGTTTTTCAC+AGG - tig0029330:16128-16147 None:intergenic 55.0%
CCTGTGAAAAACAGGCAGCG+TGG + tig0029330:16125-16144 Msa1441570:intron 55.0%
CTTCTCCCTTCGCTCCTTGA+TGG + tig0029330:16410-16429 Msa1441570:CDS 55.0%
CACGTACCATCAAGGAGCGA+AGG - tig0029330:16419-16438 None:intergenic 55.0%
CCACCAGTCCTCTGCAGTTT+AGG - tig0029330:17950-17969 None:intergenic 55.0%
CCTAAACTGCAGAGGACTGG+TGG + tig0029330:17947-17966 Msa1441570:CDS 55.0%
TGAGATACGGCTCAACCCAG+TGG - tig0029330:17974-17993 None:intergenic 55.0%
!! ATCAGCTGGAAGTGCCAGCA+AGG - tig0029330:18794-18813 None:intergenic 55.0%
CAAGAGTGGCACGGAATACC+CGG - tig0029330:18840-18859 None:intergenic 55.0%
CCAGGAGATCAAGAGTGGCA+CGG - tig0029330:18849-18868 None:intergenic 55.0%
TGCAGAAGCTGCAGAAGAGG+AGG + tig0029330:19042-19061 Msa1441570:intron 55.0%
GTCATTCAGGCCCGATGATG+AGG + tig0029330:20093-20112 Msa1441570:CDS 55.0%
CTCTTCTCGTCTCAGCATGC+TGG - tig0029330:20406-20425 None:intergenic 55.0%
CAGCATGCTGAGACGAGAAG+AGG + tig0029330:20404-20423 Msa1441570:CDS 55.0%
GGGTAAATTGGGGCTGCCAA+TGG + tig0029330:20919-20938 Msa1441570:three_prime_UTR 55.0%
! GGGCTGCCAATGGTTGGTAT+AGG + tig0029330:20929-20948 Msa1441570:three_prime_UTR 55.0%
! AACGCATTGCTGATGGGCAC+TGG - tig0029330:21042-21061 None:intergenic 55.0%
GAGTGCGAGTGCGAGTGCAA+TGG - tig0029330:13400-13419 None:intergenic 60.0%
GAGAGGCCTGTTCCCTTGGA+AGG + tig0029330:13918-13937 Msa1441570:CDS 60.0%
GGCTGACCTTCCAAGGGAAC+AGG - tig0029330:13927-13946 None:intergenic 60.0%
TAGTCCTAGGACTGCCTCCG+TGG + tig0029330:14709-14728 Msa1441570:CDS 60.0%
CCCGAGTTTGGCAGTCCTGT+TGG + tig0029330:15031-15050 Msa1441570:CDS 60.0%
GAGGCGCGGAAGCTTGTGTT+TGG - tig0029330:15342-15361 None:intergenic 60.0%
TCGAGGCTGGGCTATGTCAC+CGG - tig0029330:15473-15492 None:intergenic 60.0%
GTGACATAGCCCAGCCTCGA+CGG + tig0029330:15473-15492 Msa1441570:intron 60.0%
TGACATAGCCCAGCCTCGAC+GGG + tig0029330:15474-15493 Msa1441570:intron 60.0%
! AAACAGGCAGCGTGGGTTGC+AGG + tig0029330:16133-16152 Msa1441570:intron 60.0%
ACTCCAGTCCTGACAGGTGG+TGG - tig0029330:17775-17794 None:intergenic 60.0%
ACCACCTGTCAGGACTGGAG+TGG + tig0029330:17774-17793 Msa1441570:intron 60.0%
CCACCTGTCAGGACTGGAGT+GGG + tig0029330:17775-17794 Msa1441570:intron 60.0%
GATCCCACTCCAGTCCTGAC+AGG - tig0029330:17781-17800 None:intergenic 60.0%
GTCAGGACTGGAGTGGGATC+TGG + tig0029330:17781-17800 Msa1441570:intron 60.0%
! CAGAGGACTGGTGGACCACT+GGG + tig0029330:17956-17975 Msa1441570:CDS 60.0%
!! TGCCAGGAGAGGCTTTAGGC+CGG + tig0029330:18818-18837 Msa1441570:CDS 60.0%
! CCGTGCCACTCTTGATCTCC+TGG + tig0029330:18846-18865 Msa1441570:CDS 60.0%
CGAGGCTGGGCTATGTCACC+GGG - tig0029330:15472-15491 None:intergenic 65.0%
TGGCCACCACCTGTCAGGAC+TGG + tig0029330:17769-17788 Msa1441570:intron 65.0%
CCCACTCCAGTCCTGACAGG+TGG - tig0029330:17778-17797 None:intergenic 65.0%
! GCAGAGGACTGGTGGACCAC+TGG + tig0029330:17955-17974 Msa1441570:CDS 65.0%
!! GCCAGGAGAGGCTTTAGGCC+GGG + tig0029330:18819-18838 Msa1441570:CDS 65.0%
ACCCGGCCTAAAGCCTCTCC+TGG - tig0029330:18823-18842 None:intergenic 65.0%
!! AGCCCAGCCTCGACGGGCTA+TGG + tig0029330:15480-15499 Msa1441570:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG + tig0029330:15481-15500 Msa1441570:intron 70.0%
GCCCATAGCCCGTCGAGGCT+GGG - tig0029330:15485-15504 None:intergenic 70.0%
GGCCCATAGCCCGTCGAGGC+TGG - tig0029330:15486-15505 None:intergenic 75.0%
! GGCTGGCCCATAGCCCGTCG+AGG - tig0029330:15490-15509 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0029330 gene 12901 21174 12901 ID=Msa1441570;Name=Msa1441570
tig0029330 mRNA 12901 21174 12901 ID=Msa1441570-mRNA-1;Parent=Msa1441570;Name=Msa1441570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.94|0.95|1|0.89|0.85|20|599|1032
tig0029330 exon 12901 13372 12901 ID=Msa1441570-mRNA-1:exon:12867;Parent=Msa1441570-mRNA-1
tig0029330 exon 13454 13769 13454 ID=Msa1441570-mRNA-1:exon:12868;Parent=Msa1441570-mRNA-1
tig0029330 exon 13846 14030 13846 ID=Msa1441570-mRNA-1:exon:12869;Parent=Msa1441570-mRNA-1
tig0029330 exon 14110 14283 14110 ID=Msa1441570-mRNA-1:exon:12870;Parent=Msa1441570-mRNA-1
tig0029330 exon 14456 14601 14456 ID=Msa1441570-mRNA-1:exon:12871;Parent=Msa1441570-mRNA-1
tig0029330 exon 14690 14813 14690 ID=Msa1441570-mRNA-1:exon:12872;Parent=Msa1441570-mRNA-1
tig0029330 exon 14889 15069 14889 ID=Msa1441570-mRNA-1:exon:12873;Parent=Msa1441570-mRNA-1
tig0029330 exon 16139 16301 16139 ID=Msa1441570-mRNA-1:exon:12874;Parent=Msa1441570-mRNA-1
tig0029330 exon 16390 16431 16390 ID=Msa1441570-mRNA-1:exon:12875;Parent=Msa1441570-mRNA-1
tig0029330 exon 16510 16628 16510 ID=Msa1441570-mRNA-1:exon:12876;Parent=Msa1441570-mRNA-1
tig0029330 exon 16736 16934 16736 ID=Msa1441570-mRNA-1:exon:12877;Parent=Msa1441570-mRNA-1
tig0029330 exon 17134 17265 17134 ID=Msa1441570-mRNA-1:exon:12878;Parent=Msa1441570-mRNA-1
tig0029330 exon 17634 17737 17634 ID=Msa1441570-mRNA-1:exon:12879;Parent=Msa1441570-mRNA-1
tig0029330 exon 17879 18058 17879 ID=Msa1441570-mRNA-1:exon:12880;Parent=Msa1441570-mRNA-1
tig0029330 exon 18472 18611 18472 ID=Msa1441570-mRNA-1:exon:12881;Parent=Msa1441570-mRNA-1
tig0029330 exon 18753 18892 18753 ID=Msa1441570-mRNA-1:exon:12882;Parent=Msa1441570-mRNA-1
tig0029330 exon 19047 19216 19047 ID=Msa1441570-mRNA-1:exon:12883;Parent=Msa1441570-mRNA-1
tig0029330 exon 20088 20205 20088 ID=Msa1441570-mRNA-1:exon:12884;Parent=Msa1441570-mRNA-1
tig0029330 exon 20318 20488 20318 ID=Msa1441570-mRNA-1:exon:12885;Parent=Msa1441570-mRNA-1
tig0029330 exon 20586 21174 20586 ID=Msa1441570-mRNA-1:exon:12886;Parent=Msa1441570-mRNA-1
tig0029330 five_prime_UTR 12901 13067 12901 ID=Msa1441570-mRNA-1:five_prime_utr;Parent=Msa1441570-mRNA-1
tig0029330 CDS 13068 13372 13068 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 13454 13769 13454 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 13846 14030 13846 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 14110 14283 14110 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 14456 14601 14456 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 14690 14813 14690 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 14889 15069 14889 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 16139 16301 16139 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 16390 16431 16390 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 16510 16628 16510 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 16736 16934 16736 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 17134 17265 17134 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 17634 17737 17634 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 17879 18058 17879 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 18472 18611 18472 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 18753 18892 18753 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 19047 19216 19047 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 20088 20205 20088 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 CDS 20318 20478 20318 ID=Msa1441570-mRNA-1:cds;Parent=Msa1441570-mRNA-1
tig0029330 three_prime_UTR 20479 20488 20479 ID=Msa1441570-mRNA-1:three_prime_utr;Parent=Msa1441570-mRNA-1
tig0029330 three_prime_UTR 20586 21174 20586 ID=Msa1441570-mRNA-1:three_prime_utr;Parent=Msa1441570-mRNA-1
Gene Sequence

>Msa1441570

ATGGATGAAGTAGTTGTTATACTTGAAGGAACTCTGAGTCCGAATCCGAATGAAAGAAAGGCTGCTGAACAAAGGTTGGATGAGATCCAATATGCACCCAATCATCTTCCAACTCTTTTACAAATCATCGTTCAATCAGACGATTCTGTCTCTGATATTTCCCTCAGACAAGTTGCCGCCATTCATTTCAAAAACTTCATTGCTAAGAATTGGTCTTCCACTGCTCACTCAATCTCTTTCGCCGATAAAGACTTTGTTAGGAATCACATTCTCCTCTTTTTACCTCAACTTCCTTCTCTTTTGAGGGTTCAACTTGGTGAGTGCCTCAAAACTATTCTTCATTCCGATTATCCCGACCACTGTCCCCATCTTCTTGATTGGATCAAACATAATTTACACGATCAACAACATCTCTATTCTGCCTTATTCGTTCTCCGCATTCTTTCTATTAAATATGAATTCAAATCAGACGAAGATAGGACTCCTGCCTATCACATTATTCACGAGACATTTCCCCACCTTCTCAATATATTTAACACACTTCTCCAGATTCCTGATCCATCCATTCAAGTAGCTGATCTCATCAAGCTTATCTGTAAAATATTCTGGTCCTCTATATATTTGGAGATTCCAAAGCTTTTGTTTGATCAAAATGTATTCAGTGCTTGGATGGTGCTGTTTTTAAATGTATTGGAGAGGCCTGTTCCCTTGGAAGGTCAGCCTGTTGATCCTGATCTTCGCAAATCATGGGGTTGGTGGAAACTCAAAAAATGGACAATTCACATTCTAAACAGACTCTACACTCGTTTTGGTGACTTGAAGCTGCGAAACCCTGAAAACAAGGCATTTGCTCAAATGTTTCACAAGCATTATGCGGGGAAGATTTTGGACTGCCACTTAAATCTGTTGAATGTCATTCGAGCAGGTGGTTACTTACCTGACAGAGTTATCAACCTACTTCTTCAATATCTAACCAACAGTATTTCAAAGAATAGCATGTATACTGTGCTGCAGCCTCGGCTTGACGTTCTTCTTTTTGAAATAGTTTTCCCTCTCATGTGCTTCAATGATAATGATCAAAAGCTTTGGGACGAAGATCCACATGAGTATGTTAGGAAAGGCTATGACATTATTGAAGACTTGTATAGTCCTAGGACTGCCTCCGTGGATTTTATGAGTGAGTTGGTTCGAAAGCGCAGGGAAGATAATTTTCACAAGTTTATTCAATTCATTGTTGAAATTTTGAAAAGGTATGATGAAGCACCAGTAGAATACAGGTCTTATAGGCAGAAAGATGGAGCTCTTCTTGCTATTGGGACACTTTGTGACAAATTGAAACAAACTGAGCCCTATAAATCTGAACTTGAGCGTATGTTAGTGCAACACGTCTTTCCCGAGTTTGGCAGTCCTGTTGGCCATCTTAGGGCCAAGGCAGCGTGGGTTGCAGGACAATATGCCCACATTAGCTTCTCAGATCAGAACAATTTCCGGAAGGCATTGCAATGTGTTGTCTGTGGAATGCGAGATCCTGAACTACCTGTCCGCATTGATTCTGTTTTTGCTTTGCGTTCTTTTATTGAAGCTTGCAAAGGTGATTTAGATGAAATTCGTTCTCTTCTCCCTTCGCTCCTTGATGAGTTCTTCAAACTTATGAATGAGGTTGAGAATGAAGACCTTGTGTTTACTTTGGAGACTATTGTGGACAAGTTTGGTGAAGAAATGGCACCTTATGCACTTGGGCTATGCCAAAATTTGGCTGCTGCATTTTGGAGGTGTATGAACACTGCTGATGCTGATGATGACGCTGATGATTCAAGTTCAATGGCTGCAGTTGGTTGCTTGCGTGCTATTAGCACAATACTTGAATCAGTGAGCAGTCTTCCTCAACTTTTTGTTCAAATCGAGCCTACCTTGCTTCCCATAATGCGTAGCATGTTAACAACCGATGGTCAAGAGGTTTTTGAAGAAATTTTGGAGATCGTATCATATATGACTTTTTTCTCTCCAACAATATCACTGGACATGTGGAACCTTTGGCCATTGATGATGGAAGCACTATCAGATTGGGCTATTGATTTCTTTTCAAATATTATGGTTCCTTTGGACAATTATATTTCAAGGGGAACTTCCCATTTCATTACATGCAAAGAACCTGACTATCAACAGTGTTTGTGGAATATGATTTCCTCTATTATGTCAGATAAAAATATGGAGGACAGTGATATTGAGTCAGCTCCAAAGCTGATTGAAATTGTCTTCCTAAACTGCAGAGGACTGGTGGACCACTGGGTTGAGCCGTATCTCAGAATTACAATTGAACGTTTGCATAGAACTGGAAAATCATATTTGAAATGTCTTCTCATTCAAGTGATTTCAGATGGTCTGTACTACAACGCCACATTGACTCTTAGCATATTGCAAAAGTTAGGTGTTGCATCAGAAATCTTCAATCTTTGGTTCCAAATGCTGCAAGAAGTCAAGAAGAGTGGTGTGCGTGCTAATTTTAAAAGGGAACATGGCAAGAAAGTTTGCTGCCTTGGTTTAACATCCTTGCTGGCACTTCCAGCTGATCAATTGCCAGGAGAGGCTTTAGGCCGGGTATTCCGTGCCACTCTTGATCTCCTGGTTGCATACAAGGATCAAGTTGCAGAAGCTGCAGAAGAGGAGGAAGAAGAAGAAGAAAATGACGACGATGATATGGACGGCTTTCAAACTGATGATGAAGATGAGGATGACAGTGGTTCTGACAGGGAAATGGGAACTGATGCTGAAGATGGGGATGAAGCTGACAGTAGTAAACTTAGAAAATTGACTGATCAGGAAACGTCATTCAGGCCCGATGATGAGGACTCAGATGACGACTTCAGTGATGACGAAGAGTTACAGTCCCCAATTGATGAAGTGGATCCTTTTATTTTTTTTGTGGATACAATGAAAGTGATGCAATCATCAGATCCAATGAGGTTTCAAAACCTGACCCAAACACTTGAGTTCTCTTATCAAGCTCTTGCAAATGGTGTTGCCCAGCATGCTGAGACGAGAAGAGGTGAGATTGAGAAGGAAAAGTCGGAGAAGTCAGCAGCTACCACAGATTCTTAA
Protein sequence

>Msa1441570

MDEVVVILEGTLSPNPNERKAAEQRLDEIQYAPNHLPTLLQIIVQSDDSVSDISLRQVAAIHFKNFIAKNWSSTAHSISFADKDFVRNHILLFLPQLPSLLRVQLGECLKTILHSDYPDHCPHLLDWIKHNLHDQQHLYSALFVLRILSIKYEFKSDEDRTPAYHIIHETFPHLLNIFNTLLQIPDPSIQVADLIKLICKIFWSSIYLEIPKLLFDQNVFSAWMVLFLNVLERPVPLEGQPVDPDLRKSWGWWKLKKWTIHILNRLYTRFGDLKLRNPENKAFAQMFHKHYAGKILDCHLNLLNVIRAGGYLPDRVINLLLQYLTNSISKNSMYTVLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASVDFMSELVRKRREDNFHKFIQFIVEILKRYDEAPVEYRSYRQKDGALLAIGTLCDKLKQTEPYKSELERMLVQHVFPEFGSPVGHLRAKAAWVAGQYAHISFSDQNNFRKALQCVVCGMRDPELPVRIDSVFALRSFIEACKGDLDEIRSLLPSLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTADADDDADDSSSMAAVGCLRAISTILESVSSLPQLFVQIEPTLLPIMRSMLTTDGQEVFEEILEIVSYMTFFSPTISLDMWNLWPLMMEALSDWAIDFFSNIMVPLDNYISRGTSHFITCKEPDYQQCLWNMISSIMSDKNMEDSDIESAPKLIEIVFLNCRGLVDHWVEPYLRITIERLHRTGKSYLKCLLIQVISDGLYYNATLTLSILQKLGVASEIFNLWFQMLQEVKKSGVRANFKREHGKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLVAYKDQVAEAAEEEEEEEENDDDDMDGFQTDDEDEDDSGSDREMGTDAEDGDEADSSKLRKLTDQETSFRPDDEDSDDDFSDDEELQSPIDEVDPFIFFVDTMKVMQSSDPMRFQNLTQTLEFSYQALANGVAQHAETRRGEIEKEKSEKSAATTDS*