AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440430 MtrunA17_Chr1g0213861 97.771 1032 18 3 1 1032 1 1027 0.0 2070
Msa0440430 MtrunA17_Chr7g0221671 79.749 1037 194 7 4 1032 6 1034 0.0 1660
Msa0440430 MtrunA17_Chr7g0268271 65.079 63 22 0 651 713 3 65 2.24e-19 83.2
Msa0440430 MtrunA17_Chr7g0268281 84.783 46 7 0 608 653 1 46 5.72e-19 81.3
Msa0440430 MtrunA17_Chr7g0268261 85.185 54 8 0 900 953 1 54 1.97e-13 65.9
Msa0440430 MtrunA17_Chr4g0069091 22.034 649 393 24 1 573 1 612 4.41e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440430 AT2G31660.1 70.270 1036 289 7 5 1030 8 1034 0.0 1476
Msa0440430 AT3G59020.1 69.729 1034 292 7 4 1030 7 1026 0.0 1424
Msa0440430 AT3G59020.2 69.565 1035 293 7 4 1030 7 1027 0.0 1417

Find 285 sgRNAs with CRISPR-Local

Find 570 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTGGATCCTTCCTTTC+AGG 0.139990 3_3:+7727306 Msa0440430:three_prime_UTR
ATATATAAATTACCAAATTT+TGG 0.144050 3_3:-7723135 None:intergenic
TGTTAACATGCTACGCATTA+TGG 0.175977 3_3:-7723415 None:intergenic
GCAGTCCTGTTGGCCATCTT+AGG 0.178159 3_3:+7721557 Msa0440430:CDS
GCATTATGCGGGGAAGATTT+TGG 0.199329 3_3:+7720686 Msa0440430:CDS
ACGCTCAAGTTCAGATTTAT+AGG 0.205041 3_3:-7721503 None:intergenic
CATCAGAAATCTTCAATCTT+TGG 0.212439 3_3:+7725052 Msa0440430:CDS
CAACAAAGGCTGCTGCATTT+TGG 0.228833 3_3:+7723244 Msa0440430:intron
ATTTATTTCAGGCATTTATT+TGG 0.229478 3_3:+7727091 Msa0440430:intron
ACCACAGATTCTTAAGCTTT+TGG 0.243604 3_3:+7726980 Msa0440430:exon
AATTATGATTGGATATAGTT+TGG 0.244096 3_3:-7727675 None:intergenic
TCTTGACTTCTTGCAGCATT+TGG 0.257051 3_3:-7725077 None:intergenic
AGTTTATTCTGCAGATATTA+TGG 0.266161 3_3:+7724136 Msa0440430:intron
TGTCACATAGATGGGTAAAT+TGG 0.266366 3_3:+7727423 Msa0440430:three_prime_UTR
CTTCTCCCTTCGCTCCTTGA+TGG 0.266476 3_3:+7722926 Msa0440430:CDS
GATGGAGCTCTTCTTGCTAT+TGG 0.266710 3_3:+7721448 Msa0440430:CDS
ATTGATACGTTCATCTAAAA+AGG 0.269886 3_3:-7727250 None:intergenic
ACTTGGGCTATGCCAAAATT+TGG 0.272370 3_3:+7723123 Msa0440430:CDS
CCTTGGTTTAACATCCTTGC+TGG 0.273246 3_3:+7725293 Msa0440430:CDS
ACTGTGGAGTTTAGCGCTTC+TGG 0.273824 3_3:+7727223 Msa0440430:three_prime_UTR
CCACCAGTCCTCTGCAGTTT+AGG 0.276869 3_3:-7724463 None:intergenic
TCTCAGATCAGAACAATTTC+CGG 0.301077 3_3:+7722692 Msa0440430:CDS
TCGCCGATAAAGACTTTGTT+AGG 0.308150 3_3:+7719822 Msa0440430:CDS
AGCTTATCTGTAAAATATTC+TGG 0.310967 3_3:+7720251 Msa0440430:CDS
TGCAGATATTATGGTTCCTT+TGG 0.312879 3_3:+7724145 Msa0440430:intron
AAAACTTCATTGCTAAGAAT+TGG 0.314964 3_3:+7719774 Msa0440430:CDS
GATAAGAGAACTCAAGTGTT+TGG 0.315709 3_3:-7726874 None:intergenic
TTTCAGAGGATGTTGGATTC+AGG 0.317562 3_3:+7727198 Msa0440430:three_prime_UTR
GGCAAGAAAGTTTGCTGCCT+TGG 0.320902 3_3:+7725276 Msa0440430:CDS
AGAAAATGACGACGATGATA+TGG 0.321952 3_3:+7725591 Msa0440430:CDS
CTCTTCTCGTCTCAGCATGC+TGG 0.322424 3_3:-7726919 None:intergenic
TCTTCTACCTGTCACATAGA+TGG 0.337679 3_3:+7727414 Msa0440430:three_prime_UTR
CAGCGGTCAAAGTTGGTCTA+TGG 0.337689 3_3:+7727116 Msa0440430:three_prime_UTR
GTTCTTTGCATGTAATGAAA+TGG 0.338050 3_3:-7724193 None:intergenic
CCATCAGCAATGCGTTTAAC+AGG 0.338300 3_3:+7727562 Msa0440430:three_prime_UTR
ATTCCTAACAAAGTCTTTAT+CGG 0.340148 3_3:-7719825 None:intergenic
GTTTCACGGTTTCCAGCATA+TGG 0.341591 3_3:+7727341 Msa0440430:three_prime_UTR
AAAGGATCCACTTCATCAAT+TGG 0.341738 3_3:-7726673 None:intergenic
CAGTAGAATACAGGTCTTAT+AGG 0.342847 3_3:+7721419 Msa0440430:CDS
GCCTTTCTTTCATTCGGATT+CGG 0.343757 3_3:-7719623 None:intergenic
AAACAGGCAGCGTGGGTTGC+AGG 0.351039 3_3:+7722649 Msa0440430:intron
ATGGAGCTCTTCTTGCTATT+GGG 0.353649 3_3:+7721449 Msa0440430:CDS
AAGAATGCGGAGAACGAATA+AGG 0.358824 3_3:-7720086 None:intergenic
ACTGTCCCCATCTTCTTGAT+TGG 0.360820 3_3:+7720023 Msa0440430:CDS
ATGATAATGATCAAAAGCTT+TGG 0.361240 3_3:+7721058 Msa0440430:CDS
GTCACATAGATGGGTAAATT+GGG 0.364341 3_3:+7727424 Msa0440430:three_prime_UTR
CGCTCAAGTTCAGATTTATA+GGG 0.366117 3_3:-7721502 None:intergenic
AAGACAATTTCAATCAGCTT+TGG 0.366324 3_3:-7724440 None:intergenic
CACTGGACATGTGGAACCTT+TGG 0.368126 3_3:+7723710 Msa0440430:CDS
TCCAATAGGAAACGTCATTC+AGG 0.373563 3_3:+7726596 Msa0440430:intron
ATTATGATTGGATATAGTTT+GGG 0.376977 3_3:-7727674 None:intergenic
CAACACGTCTTTCCCGAGTT+TGG 0.382141 3_3:+7721535 Msa0440430:CDS
ATCAAAATGTATTCAGTGCT+TGG 0.383720 3_3:+7720387 Msa0440430:CDS
CAGTGGTTCTGACAGGGAAA+TGG 0.388816 3_3:+7725648 Msa0440430:CDS
CAGTCCTGTTGGCCATCTTA+GGG 0.388883 3_3:+7721558 Msa0440430:CDS
GAATGGATGGATCAGGAATC+TGG 0.390772 3_3:-7720210 None:intergenic
GGGACAGTGGTCGGGATAAT+CGG 0.391844 3_3:-7720008 None:intergenic
ATTGAACGTTTGCATAGAAC+TGG 0.394636 3_3:+7724518 Msa0440430:CDS
CCCCATGATTTGCGAAGATC+AGG 0.398780 3_3:-7720470 None:intergenic
AATTCAAATCAGACGAAGAT+AGG 0.399839 3_3:+7720122 Msa0440430:CDS
TGATAATGATCAAAAGCTTT+GGG 0.400167 3_3:+7721059 Msa0440430:CDS
ATAAGAGAACTCAAGTGTTT+GGG 0.402571 3_3:-7726873 None:intergenic
GTTAACATGCTACGCATTAT+GGG 0.406544 3_3:-7723414 None:intergenic
AAGGATCCACTTCATCAATT+GGG 0.407208 3_3:-7726672 None:intergenic
ATAGTTTGGGTTTACTATGT+TGG 0.408157 3_3:-7727661 None:intergenic
TAAAAGAGTTGGAAGATGAT+TGG 0.409023 3_3:-7719681 None:intergenic
GAAGCCATTGCTGCACTAAT+CGG 0.409071 3_3:-7727372 None:intergenic
CTGACTATCAACAGTGTTTG+TGG 0.410520 3_3:+7724216 Msa0440430:CDS
CCGTGCCACTCTTGATCTCC+TGG 0.410642 3_3:+7725362 Msa0440430:CDS
AAGATCCACATGAGTATGTT+AGG 0.411092 3_3:+7721085 Msa0440430:CDS
TCAGCAGCCTTTCTTTCATT+CGG 0.412223 3_3:-7719629 None:intergenic
CGTCTGTCAGTAAACTAACT+AGG 0.414101 3_3:+7719543 Msa0440430:five_prime_UTR
CTTAGCATATTGCAAAAGTT+AGG 0.417195 3_3:+7725024 Msa0440430:CDS
ATCCTGATCTTCGCAAATCA+TGG 0.418182 3_3:+7720468 Msa0440430:CDS
GAGACTATTGTGGACAAGTT+TGG 0.418235 3_3:+7723079 Msa0440430:CDS
CACAAACACTGTTGATAGTC+AGG 0.421066 3_3:-7724215 None:intergenic
ATTAATCAATAGAAAAGTTA+TGG 0.423401 3_3:-7727624 None:intergenic
TTGCGAAGATCAGGATCAAC+AGG 0.425592 3_3:-7720461 None:intergenic
CAAAGAAGAGGAAGTGGAGT+GGG 0.425945 3_3:+7719442 Msa0440430:five_prime_UTR
TGAAGACCTTGTGTTTACTT+TGG 0.426103 3_3:+7723057 Msa0440430:CDS
CTTTGGACAATTATATTTCA+AGG 0.426833 3_3:+7724162 Msa0440430:CDS
CCAACATCCTCTGAAATCAA+TGG 0.426870 3_3:-7727191 None:intergenic
GGCTGACCTTCCAAGGGAAC+AGG 0.427511 3_3:-7720440 None:intergenic
TGGTTAGATATTGAAGAAGT+AGG 0.428313 3_3:-7720773 None:intergenic
GTGAAGCAAAGAAGAGGAAG+TGG 0.430431 3_3:+7719436 Msa0440430:five_prime_UTR
TGATCTCCTGGTTGCATACA+AGG 0.431116 3_3:+7725374 Msa0440430:CDS
GCAGAGGACTGGTGGACCAC+TGG 0.433625 3_3:+7724471 Msa0440430:CDS
GGGCTGCCAATGGTTGGTAT+AGG 0.437415 3_3:+7727445 Msa0440430:three_prime_UTR
AACGCATTGCTGATGGGCAC+TGG 0.438256 3_3:-7727555 None:intergenic
TGGCATAGCCCAAGTGCATA+AGG 0.439443 3_3:-7723115 None:intergenic
GAAGATGATTGGGTGCATAT+TGG 0.439602 3_3:-7719670 None:intergenic
AGAACTCAAGTGTTTGGGTC+AGG 0.439926 3_3:-7726868 None:intergenic
TTCTTTGCATGTAATGAAAT+GGG 0.441132 3_3:-7724192 None:intergenic
CAACACATTGCAATGCCTTC+CGG 0.443732 3_3:-7722711 None:intergenic
GCATACAAGGATCAAGTTGC+AGG 0.446246 3_3:+7725387 Msa0440430:CDS
TCAATGCGGACAGGTAGTTC+AGG 0.449994 3_3:-7722751 None:intergenic
GTTTGATCCAATCAAGAAGA+TGG 0.450885 3_3:-7720030 None:intergenic
GTTCTTCAAACTTATGAATG+AGG 0.452917 3_3:+7723027 Msa0440430:CDS
TTCTTCAATATCTAACCAAC+AGG 0.453303 3_3:+7720778 Msa0440430:CDS
CCCGAGTTTGGCAGTCCTGT+TGG 0.454925 3_3:+7721547 Msa0440430:CDS
GGTTTCCATGCCAAGTTTCA+CGG 0.456471 3_3:+7727327 Msa0440430:three_prime_UTR
GGTTTAGTTTAGAAGAGAGA+TGG 0.457673 3_3:+7719565 Msa0440430:exon
CAATTGCCAGGAGAGGCTTT+AGG 0.466553 3_3:+7725330 Msa0440430:CDS
GAACCTTTGGCCATTGATGA+TGG 0.467627 3_3:+7723723 Msa0440430:CDS
TCTTATCAAGCTCTTGCAAA+TGG 0.467812 3_3:+7726890 Msa0440430:CDS
AGTGGTTCTGACAGGGAAAT+GGG 0.468849 3_3:+7725649 Msa0440430:CDS
ATTGGAGAGGCCTGTTCCCT+TGG 0.469011 3_3:+7720430 Msa0440430:CDS
ATGGGAACTGATGCTGAAGA+TGG 0.471480 3_3:+7725667 Msa0440430:CDS
TCCTGATCTTCGCAAATCAT+GGG 0.471937 3_3:+7720469 Msa0440430:CDS
AAAGTTATGGAGTGACTGGC+TGG 0.472326 3_3:-7727611 None:intergenic
TGTCTCGTGAATAATGTGAT+AGG 0.472814 3_3:-7720152 None:intergenic
CACATGTCCAGTGATATTGT+TGG 0.473110 3_3:-7723700 None:intergenic
TCTCCTGGCAATTGATCAGC+TGG 0.473397 3_3:-7725321 None:intergenic
TTGAAGACTTGTATAGTCCT+AGG 0.475338 3_3:+7721212 Msa0440430:CDS
CTTCCAGCTGATCAATTGCC+AGG 0.475735 3_3:+7725318 Msa0440430:CDS
CAACATCCTCTGAAATCAAT+GGG 0.480986 3_3:-7727190 None:intergenic
AGCTAGCTGAGCTGAGGAAG+AGG 0.482729 3_3:+7719485 Msa0440430:five_prime_UTR
TCATCTGAGTCCTCATCATC+GGG 0.483411 3_3:-7726619 None:intergenic
ACGATGATTTGTAAAAGAGT+TGG 0.483438 3_3:-7719692 None:intergenic
AGGATGACAGTGGTTCTGAC+AGG 0.484366 3_3:+7725641 Msa0440430:CDS
GTTAAATATATTGAGAAGGT+GGG 0.484925 3_3:-7720179 None:intergenic
AAATCCACGGAGGCAGTCCT+AGG 0.485246 3_3:-7721229 None:intergenic
GTCATCTGAGTCCTCATCAT+CGG 0.486522 3_3:-7726620 None:intergenic
CCATTGATTTCAGAGGATGT+TGG 0.487777 3_3:+7727191 Msa0440430:three_prime_UTR
ATGTTTCACAAGCATTATGC+GGG 0.488084 3_3:+7720675 Msa0440430:CDS
CTATAAGACCTGTATTCTAC+TGG 0.488098 3_3:-7721418 None:intergenic
ATGCTGGAAACCGTGAAACT+TGG 0.488760 3_3:-7727337 None:intergenic
ACTTAGAAAATTGACTGATC+AGG 0.489306 3_3:+7725711 Msa0440430:CDS
TTGGCCCTAAGATGGCCAAC+AGG 0.489970 3_3:-7721562 None:intergenic
TGACATTCAACAGATTTAAG+TGG 0.490324 3_3:-7720713 None:intergenic
GCTACTTGAATGGATGGATC+AGG 0.491104 3_3:-7720217 None:intergenic
AGAAGATGGGGACAGTGGTC+GGG 0.491280 3_3:-7720016 None:intergenic
CCTGTTAAACGCATTGCTGA+TGG 0.492883 3_3:-7727562 None:intergenic
GCTAGCTGAGCTGAGGAAGA+GGG 0.493839 3_3:+7719486 Msa0440430:five_prime_UTR
TTTCTCTCCAACAATATCAC+TGG 0.494642 3_3:+7723693 Msa0440430:CDS
GAAGTAGTTGTTATACTTGA+AGG 0.494802 3_3:+7719590 Msa0440430:CDS
TAGAAAAGTTATGGAGTGAC+TGG 0.496000 3_3:-7727615 None:intergenic
CAAGAGTGGCACGGAATACC+CGG 0.497487 3_3:-7725353 None:intergenic
TGAGATTGAGAAGGAAAAGT+CGG 0.497844 3_3:+7726943 Msa0440430:CDS
ATGAAGCACCAGTAGAATAC+AGG 0.501247 3_3:+7721410 Msa0440430:CDS
TGATGGAAGCACTATCAGAT+TGG 0.503592 3_3:+7723740 Msa0440430:CDS
GATGGAAGCACTATCAGATT+GGG 0.504868 3_3:+7723741 Msa0440430:CDS
GCCAACAGGACTGCCAAACT+CGG 0.505683 3_3:-7721548 None:intergenic
ATCAACAGGCTGACCTTCCA+AGG 0.505833 3_3:-7720447 None:intergenic
GCAAAGAAGAGGAAGTGGAG+TGG 0.506059 3_3:+7719441 Msa0440430:five_prime_UTR
GGACAAGTTTGGTGAAGAAA+TGG 0.506738 3_3:+7723090 Msa0440430:CDS
ACCCGGCCTAAAGCCTCTCC+TGG 0.506757 3_3:-7725336 None:intergenic
AAAAGAGTTGGAAGATGATT+GGG 0.509158 3_3:-7719680 None:intergenic
TTCGCAAATCATGGGGTTGG+TGG 0.509717 3_3:+7720477 Msa0440430:CDS
GAAATGGCACCTTATGCACT+TGG 0.509924 3_3:+7723106 Msa0440430:CDS
AGTAGGTTGATAACTCTGTC+AGG 0.510634 3_3:-7720756 None:intergenic
ACAGTCCCCAATTGATGAAG+TGG 0.510949 3_3:+7726666 Msa0440430:CDS
GCCAGGAGAGGCTTTAGGCC+GGG 0.512244 3_3:+7725335 Msa0440430:CDS
TTTGGACAATTATATTTCAA+GGG 0.512445 3_3:+7724163 Msa0440430:CDS
AAAGGCTGCTGAACAAAGGT+TGG 0.513295 3_3:+7719640 Msa0440430:CDS
CGCTGATGATTCAAGTTCAA+TGG 0.515595 3_3:+7723299 Msa0440430:CDS
CTTTGCAGAAGCTGCAGAAG+AGG 0.515709 3_3:+7725555 Msa0440430:intron
AAGAAGATGGGGACAGTGGT+CGG 0.516125 3_3:-7720017 None:intergenic
TGTTAAATATATTGAGAAGG+TGG 0.516144 3_3:-7720180 None:intergenic
TCGGACAGGATTCCATATGC+TGG 0.517517 3_3:-7727353 None:intergenic
TGCCAGGAGAGGCTTTAGGC+CGG 0.518509 3_3:+7725334 Msa0440430:CDS
TCTTCTCGTCTCAGCATGCT+GGG 0.520955 3_3:-7726918 None:intergenic
AGATCAGCTACTTGAATGGA+TGG 0.521067 3_3:-7720223 None:intergenic
TTTATTGAAGCTTGCAAAGG+TGG 0.522081 3_3:+7722796 Msa0440430:CDS
CTGTTAAACGCATTGCTGAT+GGG 0.523820 3_3:-7727561 None:intergenic
GTGAGTTGGTTCGAAAGCGC+AGG 0.523922 3_3:+7721257 Msa0440430:CDS
CTTCTACCTGTCACATAGAT+GGG 0.524100 3_3:+7727415 Msa0440430:three_prime_UTR
TGTATACTGTGCTGCAGCCT+CGG 0.524758 3_3:+7720989 Msa0440430:CDS
TCAATTGTAATTCTGAGATA+CGG 0.526551 3_3:-7724500 None:intergenic
CTTCCTAAACTGCAGAGGAC+TGG 0.526734 3_3:+7724460 Msa0440430:CDS
TTTGGCTCAGCGGTCAAAGT+TGG 0.527318 3_3:+7727109 Msa0440430:three_prime_UTR
TTTGATCCAATCAAGAAGAT+GGG 0.528330 3_3:-7720029 None:intergenic
CGCATTATGGGAAGCAAGGT+AGG 0.531290 3_3:-7723402 None:intergenic
GTCATTCAGGCCCGATGATG+AGG 0.532142 3_3:+7726609 Msa0440430:CDS
GAGAGGCCTGTTCCCTTGGA+AGG 0.534183 3_3:+7720434 Msa0440430:CDS
AATTTACCCATCTATGTGAC+AGG 0.535722 3_3:-7727421 None:intergenic
TCCGAATCCGAATGAAAGAA+AGG 0.536209 3_3:+7719622 Msa0440430:CDS
ACCGTACCTTGGCCCTAAGA+TGG 0.536280 3_3:-7721570 None:intergenic
CTGTTGAATGTCATTCGAGC+AGG 0.539977 3_3:+7720723 Msa0440430:CDS
GAAATGTCTTCTCATTCAAG+TGG 0.539995 3_3:+7724553 Msa0440430:CDS
TGTTGGCCATCTTAGGGCCA+AGG 0.540483 3_3:+7721564 Msa0440430:CDS
AGCGGTCAAAGTTGGTCTAT+GGG 0.542588 3_3:+7727117 Msa0440430:three_prime_UTR
AAATTGGGGCTGCCAATGGT+TGG 0.543562 3_3:+7727439 Msa0440430:three_prime_UTR
AGCTGATCAATTGCCAGGAG+AGG 0.544550 3_3:+7725323 Msa0440430:CDS
ATCTTCGCAAATCATGGGGT+TGG 0.544792 3_3:+7720474 Msa0440430:CDS
GATAGTGCTTCCATCATCAA+TGG 0.545002 3_3:-7723733 None:intergenic
CAGAGGACTGGTGGACCACT+GGG 0.550023 3_3:+7724472 Msa0440430:CDS
GGGTAAATTGGGGCTGCCAA+TGG 0.550812 3_3:+7727435 Msa0440430:three_prime_UTR
TGGGAACTGATGCTGAAGAT+GGG 0.553757 3_3:+7725668 Msa0440430:CDS
CAACAATATCACTGGACATG+TGG 0.554151 3_3:+7723701 Msa0440430:CDS
TCGTGAATAATGTGATAGGC+AGG 0.555259 3_3:-7720148 None:intergenic
AGGTCTTATAGGCAGAAAGA+TGG 0.556191 3_3:+7721430 Msa0440430:CDS
CTCAAAAGAGAAGGAAGTTG+AGG 0.557170 3_3:-7719866 None:intergenic
GTTTACTTTGGAGACTATTG+TGG 0.557940 3_3:+7723069 Msa0440430:CDS
CATTGCTGCACTAATCGGAC+AGG 0.558667 3_3:-7727367 None:intergenic
GATGAGATCAGCTACTTGAA+TGG 0.559770 3_3:-7720227 None:intergenic
TGCAGAAGCTGCAGAAGAGG+AGG 0.562224 3_3:+7725558 Msa0440430:intron
AAAGAAGAGGAAGTGGAGTG+GGG 0.564424 3_3:+7719443 Msa0440430:five_prime_UTR
CACGTACCATCAAGGAGCGA+AGG 0.566318 3_3:-7722932 None:intergenic
GCTGCGAAACCCTGAAAACA+AGG 0.567003 3_3:+7720641 Msa0440430:CDS
GGTTATACGTACATATATAG+AGG 0.568759 3_3:-7720275 None:intergenic
CACTGGATTTATACTCTCAA+CGG 0.569482 3_3:-7727538 None:intergenic
GAGTATGTTAGGAAAGGCTA+TGG 0.572371 3_3:+7721096 Msa0440430:CDS
ATCAGCTGGAAGTGCCAGCA+AGG 0.574149 3_3:-7725307 None:intergenic
GGCATGGAAACCTGAAAGGA+AGG 0.575536 3_3:-7727316 None:intergenic
CAGCATGCTGAGACGAGAAG+AGG 0.576433 3_3:+7726920 Msa0440430:CDS
GAATGGCGGCAACTTGTCTG+AGG 0.576913 3_3:-7719745 None:intergenic
GTCTGTCAGTAAACTAACTA+GGG 0.577916 3_3:+7719544 Msa0440430:five_prime_UTR
TTAAATATATTGAGAAGGTG+GGG 0.581029 3_3:-7720178 None:intergenic
CCTAAACTGCAGAGGACTGG+TGG 0.581251 3_3:+7724463 Msa0440430:CDS
GAGAAGAGGTGAGATTGAGA+AGG 0.581346 3_3:+7726934 Msa0440430:CDS
TTGAATGTCATTCGAGCAGG+TGG 0.583758 3_3:+7720726 Msa0440430:CDS
TAAGGGAATACCTTGACCAT+CGG 0.584319 3_3:-7723439 None:intergenic
ACTTGGCATGGAAACCTGAA+AGG 0.585820 3_3:-7727320 None:intergenic
ATAGCATACCTCAAAAGAGA+AGG 0.586840 3_3:-7719875 None:intergenic
TTGGACAATTATATTTCAAG+GGG 0.589802 3_3:+7724164 Msa0440430:CDS
CCACATGAGTATGTTAGGAA+AGG 0.589934 3_3:+7721090 Msa0440430:CDS
CTAGTTAGTTTACTGACAGA+CGG 0.590620 3_3:-7719542 None:intergenic
CTGTCCGATTAGTGCAGCAA+TGG 0.593204 3_3:+7727368 Msa0440430:three_prime_UTR
AAAACAGAATCAATGCGGAC+AGG 0.593718 3_3:-7722760 None:intergenic
TATCATTGAAGCACATGAGA+GGG 0.594402 3_3:-7721041 None:intergenic
AATGTTTCACAAGCATTATG+CGG 0.595466 3_3:+7720674 Msa0440430:CDS
TCCAAAAGCTTAAGAATCTG+TGG 0.596418 3_3:-7726981 None:intergenic
AAAGAAAGGCTGCTGAACAA+AGG 0.597576 3_3:+7719636 Msa0440430:CDS
TCAAGTTCAATGGCTGCAGT+TGG 0.600507 3_3:+7723309 Msa0440430:CDS
CCAACAGGACTGCCAAACTC+GGG 0.601191 3_3:-7721547 None:intergenic
AGGATCCACTTCATCAATTG+GGG 0.601464 3_3:-7726671 None:intergenic
CATATTTAATAGAAAGAATG+CGG 0.602450 3_3:-7720099 None:intergenic
ATGTTAACAACCGATGGTCA+AGG 0.603700 3_3:+7723429 Msa0440430:CDS
CTTGATCCTTGTATGCAACC+AGG 0.604622 3_3:-7725380 None:intergenic
GAGGTTCCCATTGATTTCAG+AGG 0.604872 3_3:+7727184 Msa0440430:three_prime_UTR
AAATTGCCTATACCAACCAT+TGG 0.605583 3_3:-7727451 None:intergenic
CTAGCTGAGCTGAGGAAGAG+GGG 0.606609 3_3:+7719487 Msa0440430:five_prime_UTR
GTGTGTTAAATATATTGAGA+AGG 0.607757 3_3:-7720183 None:intergenic
TCTGATCTGAGAAGCTAATG+TGG 0.613687 3_3:-7722681 None:intergenic
GGATGACAGTGGTTCTGACA+GGG 0.618263 3_3:+7725642 Msa0440430:CDS
GCGAGTGTGAAGCAAAGAAG+AGG 0.618413 3_3:+7719430 Msa0440430:five_prime_UTR
TTCTAAACAGACTCTACACT+CGG 0.620641 3_3:+7720525 Msa0440430:CDS
GCTACGCATTATGGGAAGCA+AGG 0.622515 3_3:-7723406 None:intergenic
TGAGTTGGTTCGAAAGCGCA+GGG 0.626418 3_3:+7721258 Msa0440430:CDS
TAGTCCTAGGACTGCCTCCG+TGG 0.626651 3_3:+7721225 Msa0440430:CDS
CAGGCATTTATTTGGCTCAG+CGG 0.627478 3_3:+7727099 Msa0440430:intron
AAATGGCACCTTATGCACTT+GGG 0.628408 3_3:+7723107 Msa0440430:CDS
CGTAGCATGTTAACAACCGA+TGG 0.630518 3_3:+7723423 Msa0440430:CDS
CTTGAAATATAATTGTCCAA+AGG 0.630964 3_3:-7724161 None:intergenic
AATGGCGGCAACTTGTCTGA+GGG 0.630984 3_3:-7719744 None:intergenic
CCTGCGAGTTTAGTATGCTG+AGG 0.633004 3_3:+7727165 Msa0440430:three_prime_UTR
CAACTCACTCATAAAATCCA+CGG 0.633012 3_3:-7721242 None:intergenic
AAAAGAAGAACGTCAAGCCG+AGG 0.634422 3_3:-7721006 None:intergenic
CTGCAAGAAGTCAAGAAGAG+TGG 0.634459 3_3:+7725084 Msa0440430:CDS
TTATCATTGAAGCACATGAG+AGG 0.634688 3_3:-7721042 None:intergenic
ATTGTCTTCCTAAACTGCAG+AGG 0.634847 3_3:+7724455 Msa0440430:CDS
GGAAACCGTGAAACTTGGCA+TGG 0.636126 3_3:-7727332 None:intergenic
TCACATAGATGGGTAAATTG+GGG 0.636621 3_3:+7727425 Msa0440430:three_prime_UTR
CTTCCATCATCAATGGCCAA+AGG 0.636876 3_3:-7723726 None:intergenic
GAAAGAGATTGAGTGAGCAG+TGG 0.640985 3_3:-7719801 None:intergenic
TTGTACAGCTAGCTGAGCTG+AGG 0.641168 3_3:+7719479 Msa0440430:five_prime_UTR
AAATGTATTCAGTGCTTGGA+TGG 0.641307 3_3:+7720391 Msa0440430:CDS
ACGTACCATCAAGGAGCGAA+GGG 0.642973 3_3:-7722931 None:intergenic
AGTTTACTGACAGACGGAGA+GGG 0.645436 3_3:-7719536 None:intergenic
CCTGATCTTCGCAAATCATG+GGG 0.645502 3_3:+7720470 Msa0440430:CDS
CCTCAGCATACTAAACTCGC+AGG 0.646135 3_3:-7727165 None:intergenic
CCTTTCCTAACATACTCATG+TGG 0.647215 3_3:-7721090 None:intergenic
TCAAACTGATGATGAAGATG+AGG 0.647870 3_3:+7725621 Msa0440430:CDS
CTGATCTGAGAAGCTAATGT+GGG 0.648144 3_3:-7722680 None:intergenic
TTGATCCAATCAAGAAGATG+GGG 0.650413 3_3:-7720028 None:intergenic
CCAGGAGATCAAGAGTGGCA+CGG 0.650577 3_3:-7725362 None:intergenic
TGCAACCAGGAGATCAAGAG+TGG 0.652472 3_3:-7725367 None:intergenic
TGCAATCATCAGATCCAATG+AGG 0.656544 3_3:+7726837 Msa0440430:CDS
AATCAAGAAGATGGGGACAG+TGG 0.659255 3_3:-7720021 None:intergenic
GCATTGCAATGTGTTGTCTG+TGG 0.661281 3_3:+7722718 Msa0440430:CDS
TAGTTTACTGACAGACGGAG+AGG 0.668057 3_3:-7719537 None:intergenic
AGATCAGAACAATTTCCGGA+AGG 0.668438 3_3:+7722696 Msa0440430:CDS
GGGAACTGATGCTGAAGATG+GGG 0.669290 3_3:+7725669 Msa0440430:CDS
ATGTTGGATTCAGGAAACTG+TGG 0.669716 3_3:+7727207 Msa0440430:three_prime_UTR
TCAACAGGCTGACCTTCCAA+GGG 0.680227 3_3:-7720446 None:intergenic
TAGTCTCCAAAGTAAACACA+AGG 0.681795 3_3:-7723063 None:intergenic
AATGACGACGATGATATGGA+CGG 0.695430 3_3:+7725595 Msa0440430:CDS
CAATATGCTAAGAGTCAATG+TGG 0.695584 3_3:-7725013 None:intergenic
TGTTTCACAAGCATTATGCG+GGG 0.696183 3_3:+7720676 Msa0440430:CDS
GAAAAGGAGTAGAACAACGA+CGG 0.699603 3_3:-7727278 None:intergenic
TGAGATACGGCTCAACCCAG+TGG 0.705549 3_3:-7724487 None:intergenic
CCAGCAAGGATGTTAAACCA+AGG 0.712970 3_3:-7725293 None:intergenic
GATGAAGATGAGGATGACAG+TGG 0.770603 3_3:+7725631 Msa0440430:CDS
CTCACTCATAAAATCCACGG+AGG 0.783942 3_3:-7721239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATACATAAATAGA+AGG - chr3_3:7721660-7721679 None:intergenic 10.0%
!!! TCTATTTATGTATTTTAAAT+TGG + chr3_3:7721660-7721679 Msa0440430:intron 10.0%
!! AAAAAATAATTATATACTCA+TGG - chr3_3:7722180-7722199 None:intergenic 10.0%
!!! ATATATAAATTACCAAATTT+TGG - chr3_3:7723138-7723157 None:intergenic 10.0%
!!! TTGAATTTTTATCATTAATT+TGG + chr3_3:7724265-7724284 Msa0440430:intron 10.0%
!! AAAAATAAATAAAAGAGTTA+CGG - chr3_3:7725432-7725451 None:intergenic 10.0%
!!! TAAAATATTTTAATCTGTAT+AGG + chr3_3:7725928-7725947 Msa0440430:intron 10.0%
!! TATTATTAAAACCAAAAAAA+TGG - chr3_3:7727516-7727535 None:intergenic 10.0%
!! TTTGAATGAATAAAATGAAA+TGG - chr3_3:7720565-7720584 None:intergenic 15.0%
!! GTTAAGAATAATAAGATTTA+TGG + chr3_3:7721348-7721367 Msa0440430:intron 15.0%
!!! TGCCTTATTTAATTTTTTTT+GGG - chr3_3:7721776-7721795 None:intergenic 15.0%
!!! ATGTTTGTTACTTAATAAAA+GGG + chr3_3:7723980-7723999 Msa0440430:intron 15.0%
!! CAAATTTCTTAAAGATAATA+GGG + chr3_3:7724920-7724939 Msa0440430:intron 15.0%
!! TCCATATATTAACTAAATAT+AGG + chr3_3:7725773-7725792 Msa0440430:intron 15.0%
!! TCCTATATTTAGTTAATATA+TGG - chr3_3:7725777-7725796 None:intergenic 15.0%
!! AAATCATTAAGTTAACAAAA+TGG - chr3_3:7726282-7726301 None:intergenic 15.0%
!! TCTATAATTCAAATAAACTA+TGG - chr3_3:7726316-7726335 None:intergenic 15.0%
!!! TTGTATTTTAACCATTTTTT+TGG + chr3_3:7727502-7727521 Msa0440430:three_prime_UTR 15.0%
!! ATTAATCAATAGAAAAGTTA+TGG - chr3_3:7727627-7727646 None:intergenic 15.0%
!!! AATGAAGTTTTTGAAATGAA+TGG - chr3_3:7719765-7719784 None:intergenic 20.0%
!! CATATTTAATAGAAAGAATG+CGG - chr3_3:7720102-7720121 None:intergenic 20.0%
!! ATGATGAAAATAATAAGAGA+AGG - chr3_3:7720303-7720322 None:intergenic 20.0%
!! TAAAAAAATGAAGATGAAGA+CGG - chr3_3:7720331-7720350 None:intergenic 20.0%
!!! TTTTTTTAAATTTACGCAGT+TGG + chr3_3:7720343-7720362 Msa0440430:intron 20.0%
!!! TCATTGTTGAAATTTTGAAA+AGG + chr3_3:7721308-7721327 Msa0440430:CDS 20.0%
!! GAATAATAAGATTTATGGAT+TGG + chr3_3:7721353-7721372 Msa0440430:intron 20.0%
!!! ATTTATGTTTTTTCCATTCT+AGG + chr3_3:7721383-7721402 Msa0440430:intron 20.0%
!!! AAAGGGATGTTTTAAATTTT+AGG + chr3_3:7721749-7721768 Msa0440430:intron 20.0%
!!! GCCTTATTTAATTTTTTTTG+GGG - chr3_3:7721775-7721794 None:intergenic 20.0%
!!! GTGCCTTATTTAATTTTTTT+TGG - chr3_3:7721777-7721796 None:intergenic 20.0%
!!! AATTAAATAAGGCACTATAA+AGG + chr3_3:7721782-7721801 Msa0440430:intron 20.0%
!!! ATTTTATGAAAAAAACACAC+TGG + chr3_3:7721806-7721825 Msa0440430:intron 20.0%
!! AAATAATTATATACTCATGG+AGG - chr3_3:7722177-7722196 None:intergenic 20.0%
!!! TAATTATTTTTTTCATCGCA+CGG + chr3_3:7722188-7722207 Msa0440430:intron 20.0%
!! AATTCAAGAATTGAACAAAA+AGG + chr3_3:7722274-7722293 Msa0440430:intron 20.0%
!! ATTCAAGAATTGAACAAAAA+GGG + chr3_3:7722275-7722294 Msa0440430:intron 20.0%
!! TTATAGTGAAAGCAATATTA+AGG - chr3_3:7722495-7722514 None:intergenic 20.0%
!! AGTATTTGAGTAATACATTA+TGG + chr3_3:7722577-7722596 Msa0440430:intron 20.0%
!! CAAAATTCTTTAGATAATGA+AGG - chr3_3:7722605-7722624 None:intergenic 20.0%
!!! CTTCATTATCTAAAGAATTT+TGG + chr3_3:7722603-7722622 Msa0440430:intron 20.0%
!!! TATTGATTTCTTTTCAAGTA+TGG + chr3_3:7723765-7723784 Msa0440430:intron 20.0%
!!! CTTTTATTAAGTAACAAACA+TGG - chr3_3:7723981-7724000 None:intergenic 20.0%
!!! CATGTTTGTTACTTAATAAA+AGG + chr3_3:7723979-7723998 Msa0440430:intron 20.0%
!!! ATATCTTTCAAATATTTTCC+TGG + chr3_3:7724046-7724065 Msa0440430:intron 20.0%
!! TTTGGACAATTATATTTCAA+GGG + chr3_3:7724163-7724182 Msa0440430:CDS 20.0%
!! AATGTTCAAAATAGAAACAT+GGG - chr3_3:7724693-7724712 None:intergenic 20.0%
!!! CCTATTATCTTTAAGAAATT+TGG - chr3_3:7724922-7724941 None:intergenic 20.0%
!! CCAAATTTCTTAAAGATAAT+AGG + chr3_3:7724919-7724938 Msa0440430:intron 20.0%
!! TAAATTACAATATGATTGTC+AGG + chr3_3:7725494-7725513 Msa0440430:intron 20.0%
!!! ATGTTTTATTGTTTACTACT+AGG + chr3_3:7726030-7726049 Msa0440430:intron 20.0%
!! ACTTTATACTATGTCAAATT+TGG - chr3_3:7726064-7726083 None:intergenic 20.0%
!!! GATTCATATTTGTATCTTTT+AGG + chr3_3:7726441-7726460 Msa0440430:intron 20.0%
!! GTATCCACAAAAAAAATAAA+AGG - chr3_3:7726694-7726713 None:intergenic 20.0%
!! ACAATTATAGCAATAATGAT+AGG - chr3_3:7726775-7726794 None:intergenic 20.0%
!! ATTTATTTCAGGCATTTATT+TGG + chr3_3:7727091-7727110 Msa0440430:intron 20.0%
! AAAACTTCATTGCTAAGAAT+TGG + chr3_3:7719774-7719793 Msa0440430:CDS 25.0%
! ATTCCTAACAAAGTCTTTAT+CGG - chr3_3:7719828-7719847 None:intergenic 25.0%
! TTAAATATATTGAGAAGGTG+GGG - chr3_3:7720181-7720200 None:intergenic 25.0%
! GTTAAATATATTGAGAAGGT+GGG - chr3_3:7720182-7720201 None:intergenic 25.0%
! TGTTAAATATATTGAGAAGG+TGG - chr3_3:7720183-7720202 None:intergenic 25.0%
! GTGTGTTAAATATATTGAGA+AGG - chr3_3:7720186-7720205 None:intergenic 25.0%
! AGCTTATCTGTAAAATATTC+TGG + chr3_3:7720251-7720270 Msa0440430:CDS 25.0%
! TGAAAATAATAAGAGAAGGT+AGG - chr3_3:7720299-7720318 None:intergenic 25.0%
!! TTTTGATCAAACAAAAGCTT+TGG - chr3_3:7720374-7720393 None:intergenic 25.0%
!!! TGTTTTTAAATGTATTGGAG+AGG + chr3_3:7720417-7720436 Msa0440430:CDS 25.0%
! TATCATATAAACCTCTTTAG+TGG + chr3_3:7720809-7720828 Msa0440430:intron 25.0%
!! ATTTTCTACCATCAAATTTC+AGG + chr3_3:7720897-7720916 Msa0440430:intron 25.0%
!! ATGATAATGATCAAAAGCTT+TGG + chr3_3:7721058-7721077 Msa0440430:CDS 25.0%
!! TGATAATGATCAAAAGCTTT+GGG + chr3_3:7721059-7721078 Msa0440430:CDS 25.0%
! TGTGCACATATAAATTGTAT+AGG - chr3_3:7721598-7721617 None:intergenic 25.0%
! GCCCCAAAAAAAATTAAATA+AGG + chr3_3:7721771-7721790 Msa0440430:intron 25.0%
!!! AATTATTTTTTTCATCGCAC+GGG + chr3_3:7722189-7722208 Msa0440430:intron 25.0%
!!! CTTTGCTGTTTTATTTTGTA+TGG + chr3_3:7722313-7722332 Msa0440430:intron 25.0%
! CAAAACACTAATACTTTCTT+TGG - chr3_3:7722518-7722537 None:intergenic 25.0%
!!! TCTCTGTTTATTTTGTGATT+TGG + chr3_3:7722825-7722844 Msa0440430:intron 25.0%
! CATCAAGATTAATCTTTACT+AGG - chr3_3:7722857-7722876 None:intergenic 25.0%
! TACATTGTACTTATTTGACT+TGG + chr3_3:7722971-7722990 Msa0440430:intron 25.0%
!! AACTCTGAAAATATTTGTGT+TGG - chr3_3:7723010-7723029 None:intergenic 25.0%
! CAGATAAACATGATTCATAA+GGG - chr3_3:7723459-7723478 None:intergenic 25.0%
! TCAGATAAACATGATTCATA+AGG - chr3_3:7723460-7723479 None:intergenic 25.0%
! TATACACATTTATTGAGCAA+AGG + chr3_3:7723547-7723566 Msa0440430:intron 25.0%
! TATCACTCATTTAGCATTAT+TGG + chr3_3:7723598-7723617 Msa0440430:intron 25.0%
!!! AGAGGTTTTTGAAGAAATTT+TGG + chr3_3:7723648-7723667 Msa0440430:intron 25.0%
! ATCCATACTATTCAAAAACA+TGG + chr3_3:7724022-7724041 Msa0440430:intron 25.0%
!!! TTCCATGTTTTTGAATAGTA+TGG - chr3_3:7724027-7724046 None:intergenic 25.0%
! AGTTTATTCTGCAGATATTA+TGG + chr3_3:7724136-7724155 Msa0440430:intron 25.0%
! CTTGAAATATAATTGTCCAA+AGG - chr3_3:7724164-7724183 None:intergenic 25.0%
! CTTTGGACAATTATATTTCA+AGG + chr3_3:7724162-7724181 Msa0440430:CDS 25.0%
! TTGGACAATTATATTTCAAG+GGG + chr3_3:7724164-7724183 Msa0440430:CDS 25.0%
! TTCTTTGCATGTAATGAAAT+GGG - chr3_3:7724195-7724214 None:intergenic 25.0%
!!! TCAATTGTAATTCTGAGATA+CGG - chr3_3:7724503-7724522 None:intergenic 25.0%
! GAAAAGAAAACATGGTATAA+TGG - chr3_3:7724668-7724687 None:intergenic 25.0%
! CAATGTTCAAAATAGAAACA+TGG - chr3_3:7724694-7724713 None:intergenic 25.0%
!!! CATGTTTCTATTTTGAACAT+TGG + chr3_3:7724692-7724711 Msa0440430:intron 25.0%
!!! TTTTTTTTGCAGATTTCAGA+TGG + chr3_3:7724976-7724995 Msa0440430:intron 25.0%
! AAACTAATTACGAAGTTTCA+GGG - chr3_3:7726136-7726155 None:intergenic 25.0%
! AAACAAAGTATGATTCCATT+AGG + chr3_3:7726192-7726211 Msa0440430:intron 25.0%
! TTACTTTAAGCAAAAGTTCT+GGG - chr3_3:7726230-7726249 None:intergenic 25.0%
! ATTACTTTAAGCAAAAGTTC+TGG - chr3_3:7726231-7726250 None:intergenic 25.0%
!! TATTTTATCTTCCAAGAGAA+AGG - chr3_3:7726482-7726501 None:intergenic 25.0%
!!! GGATCCTTTTATTTTTTTTG+TGG + chr3_3:7726687-7726706 Msa0440430:CDS 25.0%
!!! TTTTTTGTGGATACAATGAA+AGG + chr3_3:7726700-7726719 Msa0440430:CDS 25.0%
! ATAGCAATAATGATAGGTAT+TGG - chr3_3:7726769-7726788 None:intergenic 25.0%
! ATTGATACGTTCATCTAAAA+AGG - chr3_3:7727253-7727272 None:intergenic 25.0%
GAAGTAGTTGTTATACTTGA+AGG + chr3_3:7719590-7719609 Msa0440430:CDS 30.0%
AAAAGAGTTGGAAGATGATT+GGG - chr3_3:7719683-7719702 None:intergenic 30.0%
TAAAAGAGTTGGAAGATGAT+TGG - chr3_3:7719684-7719703 None:intergenic 30.0%
! ACGATGATTTGTAAAAGAGT+TGG - chr3_3:7719695-7719714 None:intergenic 30.0%
!!! GAAGTTTTTGAAATGAATGG+CGG - chr3_3:7719762-7719781 None:intergenic 30.0%
GAATGGGAATTATTACAAAC+AGG - chr3_3:7719941-7719960 None:intergenic 30.0%
! ATAATTCCCATTCCATTTTC+AGG + chr3_3:7719948-7719967 Msa0440430:intron 30.0%
! TAATTCCCATTCCATTTTCA+GGG + chr3_3:7719949-7719968 Msa0440430:intron 30.0%
TTTGATCCAATCAAGAAGAT+GGG - chr3_3:7720032-7720051 None:intergenic 30.0%
AATTCAAATCAGACGAAGAT+AGG + chr3_3:7720122-7720141 Msa0440430:CDS 30.0%
GGTTATACGTACATATATAG+AGG - chr3_3:7720278-7720297 None:intergenic 30.0%
ATCAAAATGTATTCAGTGCT+TGG + chr3_3:7720387-7720406 Msa0440430:CDS 30.0%
!!! GGTGCTGTTTTTAAATGTAT+TGG + chr3_3:7720412-7720431 Msa0440430:CDS 30.0%
! TCTATGCTTGTTTACAGTTT+TGG + chr3_3:7720609-7720628 Msa0440430:intron 30.0%
AATGTTTCACAAGCATTATG+CGG + chr3_3:7720674-7720693 Msa0440430:CDS 30.0%
TGACATTCAACAGATTTAAG+TGG - chr3_3:7720716-7720735 None:intergenic 30.0%
TGGTTAGATATTGAAGAAGT+AGG - chr3_3:7720776-7720795 None:intergenic 30.0%
TTCTTCAATATCTAACCAAC+AGG + chr3_3:7720778-7720797 Msa0440430:CDS 30.0%
!! TATGATATAGAAGTACCTGT+TGG - chr3_3:7720796-7720815 None:intergenic 30.0%
CAATATGTCCTGAAATTTGA+TGG - chr3_3:7720908-7720927 None:intergenic 30.0%
AAAACAAAAGAGAGTGAATC+TGG - chr3_3:7721635-7721654 None:intergenic 30.0%
! TCCCTTTAAAGACTATATCT+GGG - chr3_3:7721736-7721755 None:intergenic 30.0%
! ATCCCTTTAAAGACTATATC+TGG - chr3_3:7721737-7721756 None:intergenic 30.0%
! AATTAGCATGTTCTTTTGTG+TGG - chr3_3:7722033-7722052 None:intergenic 30.0%
GATTCCAACCTATTAAAACT+TGG - chr3_3:7722105-7722124 None:intergenic 30.0%
! GCGACATGAAAAAACATTTT+TGG - chr3_3:7722388-7722407 None:intergenic 30.0%
CTTATATTCTTCCACATGTT+GGG + chr3_3:7722415-7722434 Msa0440430:intron 30.0%
!! TTTGTTTTCCTGTGAAAAAC+AGG + chr3_3:7722633-7722652 Msa0440430:intron 30.0%
AAGCAAAAACAGAATCAATG+CGG - chr3_3:7722768-7722787 None:intergenic 30.0%
! TCTTTTATTGAAGCTTGCAA+AGG + chr3_3:7722793-7722812 Msa0440430:CDS 30.0%
GTTCTTCAAACTTATGAATG+AGG + chr3_3:7723027-7723046 Msa0440430:CDS 30.0%
! TCGATTTGAACAAAAAGTTG+AGG - chr3_3:7723381-7723400 None:intergenic 30.0%
TTCTACTTGATTGTATGGAT+TGG + chr3_3:7723573-7723592 Msa0440430:intron 30.0%
TCTACTTGATTGTATGGATT+GGG + chr3_3:7723574-7723593 Msa0440430:intron 30.0%
! AGATTATCTTCAGGTTTACT+GGG - chr3_3:7723909-7723928 None:intergenic 30.0%
!!! ATAAAAGGGTGCTATTTTTC+TGG + chr3_3:7723994-7724013 Msa0440430:intron 30.0%
GTTCTTTGCATGTAATGAAA+TGG - chr3_3:7724196-7724215 None:intergenic 30.0%
AATTCAAAGATCACTTACAG+AGG - chr3_3:7724252-7724271 None:intergenic 30.0%
AAGACAATTTCAATCAGCTT+TGG - chr3_3:7724443-7724462 None:intergenic 30.0%
ACATGCACAAATAAGATAGT+TGG + chr3_3:7724601-7724620 Msa0440430:intron 30.0%
!! CTTTTAAGAAAGAAAGCAAC+AGG - chr3_3:7724629-7724648 None:intergenic 30.0%
TTGCTTTCTTTCTTAAAAGC+TGG + chr3_3:7724630-7724649 Msa0440430:intron 30.0%
! TGGATGCATCTAATTTTGTA+TGG + chr3_3:7724752-7724771 Msa0440430:intron 30.0%
AATAAATTTCATCCGACAAG+TGG - chr3_3:7724855-7724874 None:intergenic 30.0%
CTTAGCATATTGCAAAAGTT+AGG + chr3_3:7725024-7725043 Msa0440430:CDS 30.0%
CATCAGAAATCTTCAATCTT+TGG + chr3_3:7725052-7725071 Msa0440430:CDS 30.0%
AAGTATGGAGTAAGTAATTG+AGG - chr3_3:7725167-7725186 None:intergenic 30.0%
TGCAATGTGAAAACAAAGTA+TGG - chr3_3:7725182-7725201 None:intergenic 30.0%
!!! ACTTGTGACTATTTTTATGC+AGG + chr3_3:7725247-7725266 Msa0440430:intron 30.0%
!!! CTTGTGACTATTTTTATGCA+GGG + chr3_3:7725248-7725267 Msa0440430:intron 30.0%
CAATAGTAGAGAAACAGAAA+TGG - chr3_3:7725533-7725552 None:intergenic 30.0%
ACTTAGAAAATTGACTGATC+AGG + chr3_3:7725711-7725730 Msa0440430:CDS 30.0%
!!! TTTCTTTTTTGCATGCAGAT+TGG - chr3_3:7725811-7725830 None:intergenic 30.0%
AATCTGCATGCAAAAAAGAA+AGG + chr3_3:7725810-7725829 Msa0440430:intron 30.0%
!! ATTTCTAGCAATAACGAACT+TGG - chr3_3:7725876-7725895 None:intergenic 30.0%
! CCTCACAAAATTGACTTATA+AGG - chr3_3:7726103-7726122 None:intergenic 30.0%
! CCTTATAAGTCAATTTTGTG+AGG + chr3_3:7726100-7726119 Msa0440430:intron 30.0%
GAAACTAATTACGAAGTTTC+AGG - chr3_3:7726137-7726156 None:intergenic 30.0%
!! AAACTTGTTTTCCTTTCTCT+TGG + chr3_3:7726468-7726487 Msa0440430:intron 30.0%
GAAACCTTTAACATGCTTTA+AGG - chr3_3:7726741-7726760 None:intergenic 30.0%
ATAAGAGAACTCAAGTGTTT+GGG - chr3_3:7726876-7726895 None:intergenic 30.0%
CTTCATCTCTTACAAAGAAT+GGG - chr3_3:7727061-7727080 None:intergenic 30.0%
TCTTCATCTCTTACAAAGAA+TGG - chr3_3:7727062-7727081 None:intergenic 30.0%
ATTCTTTGTAAGAGATGAAG+AGG + chr3_3:7727061-7727080 Msa0440430:intron 30.0%
TTCTTTGTAAGAGATGAAGA+GGG + chr3_3:7727062-7727081 Msa0440430:intron 30.0%
ATACGTTCATCTAAAAAGGA+AGG - chr3_3:7727249-7727268 None:intergenic 30.0%
! ATAGTTTGGGTTTACTATGT+TGG - chr3_3:7727664-7727683 None:intergenic 30.0%
! CTAGTTAGTTTACTGACAGA+CGG - chr3_3:7719545-7719564 None:intergenic 35.0%
GTCTGTCAGTAAACTAACTA+GGG + chr3_3:7719544-7719563 Msa0440430:five_prime_UTR 35.0%
! GGTTTAGTTTAGAAGAGAGA+TGG + chr3_3:7719565-7719584 Msa0440430:exon 35.0%
AAGGAAGTTGAGGTAAAAAG+AGG - chr3_3:7719859-7719878 None:intergenic 35.0%
ATAGCATACCTCAAAAGAGA+AGG - chr3_3:7719878-7719897 None:intergenic 35.0%
TTGAACCCTGAAAATGGAAT+GGG - chr3_3:7719957-7719976 None:intergenic 35.0%
!! CGGAATGAAGAATAGTTTTG+AGG - chr3_3:7719991-7720010 None:intergenic 35.0%
TTGATCCAATCAAGAAGATG+GGG - chr3_3:7720031-7720050 None:intergenic 35.0%
GTTTGATCCAATCAAGAAGA+TGG - chr3_3:7720033-7720052 None:intergenic 35.0%
TGTCTCGTGAATAATGTGAT+AGG - chr3_3:7720155-7720174 None:intergenic 35.0%
AAATGTATTCAGTGCTTGGA+TGG + chr3_3:7720391-7720410 Msa0440430:CDS 35.0%
! GTTGGTGGAAACTCAAAAAA+TGG + chr3_3:7720492-7720511 Msa0440430:CDS 35.0%
TTCTAAACAGACTCTACACT+CGG + chr3_3:7720525-7720544 Msa0440430:CDS 35.0%
ATGTTTCACAAGCATTATGC+GGG + chr3_3:7720675-7720694 Msa0440430:CDS 35.0%
ATGAAATGACACCACTAAAG+AGG - chr3_3:7720823-7720842 None:intergenic 35.0%
CATTTAACAGAGCAGCTAAT+AGG - chr3_3:7720872-7720891 None:intergenic 35.0%
CTATTAGCTGCTCTGTTAAA+TGG + chr3_3:7720870-7720889 Msa0440430:intron 35.0%
TATCATTGAAGCACATGAGA+GGG - chr3_3:7721044-7721063 None:intergenic 35.0%
TTATCATTGAAGCACATGAG+AGG - chr3_3:7721045-7721064 None:intergenic 35.0%
AAGATCCACATGAGTATGTT+AGG + chr3_3:7721085-7721104 Msa0440430:CDS 35.0%
! AAGGCTATGGTAAGTCTTAT+TGG + chr3_3:7721109-7721128 Msa0440430:intron 35.0%
TTGAAGACTTGTATAGTCCT+AGG + chr3_3:7721212-7721231 Msa0440430:CDS 35.0%
CAACTCACTCATAAAATCCA+CGG - chr3_3:7721245-7721264 None:intergenic 35.0%
CTATAAGACCTGTATTCTAC+TGG - chr3_3:7721421-7721440 None:intergenic 35.0%
! CAGTAGAATACAGGTCTTAT+AGG + chr3_3:7721419-7721438 Msa0440430:CDS 35.0%
CGCTCAAGTTCAGATTTATA+GGG - chr3_3:7721505-7721524 None:intergenic 35.0%
ACGCTCAAGTTCAGATTTAT+AGG - chr3_3:7721506-7721525 None:intergenic 35.0%
TGTGTGTGGATATTGTGAAA+TGG - chr3_3:7721689-7721708 None:intergenic 35.0%
ATTTCACAATATCCACACAC+AGG + chr3_3:7721688-7721707 Msa0440430:intron 35.0%
TTTCACAATATCCACACACA+GGG + chr3_3:7721689-7721708 Msa0440430:intron 35.0%
!! GGCCTACAAATTTGTTAAGA+CGG - chr3_3:7721715-7721734 None:intergenic 35.0%
GCCCAGATATAGTCTTTAAA+GGG + chr3_3:7721732-7721751 Msa0440430:intron 35.0%
ATGAAAAAAACACACTGGTG+AGG + chr3_3:7721811-7721830 Msa0440430:intron 35.0%
TCCGTATCCGATAAATGATT+TGG + chr3_3:7722058-7722077 Msa0440430:intron 35.0%
CCCAAATCATTTATCGGATA+CGG - chr3_3:7722062-7722081 None:intergenic 35.0%
CCGTATCCGATAAATGATTT+GGG + chr3_3:7722059-7722078 Msa0440430:intron 35.0%
GTAGCACCCAAATCATTTAT+CGG - chr3_3:7722068-7722087 None:intergenic 35.0%
! ATTTGGGTGCTACAAAAGTT+GGG + chr3_3:7722075-7722094 Msa0440430:intron 35.0%
!! GCATCCAAGTTTTAATAGGT+TGG + chr3_3:7722098-7722117 Msa0440430:intron 35.0%
GTGTACATTTACATTTCAGC+AGG - chr3_3:7722366-7722385 None:intergenic 35.0%
CATGTGGAAGAATATAAGGT+TGG - chr3_3:7722413-7722432 None:intergenic 35.0%
CCAACATGTGGAAGAATATA+AGG - chr3_3:7722417-7722436 None:intergenic 35.0%
CCTTATATTCTTCCACATGT+TGG + chr3_3:7722414-7722433 Msa0440430:intron 35.0%
TCTCAGATCAGAACAATTTC+CGG + chr3_3:7722692-7722711 Msa0440430:CDS 35.0%
TTTATTGAAGCTTGCAAAGG+TGG + chr3_3:7722796-7722815 Msa0440430:CDS 35.0%
TGGTACGTGCATGAAAAAAT+TGG + chr3_3:7722946-7722965 Msa0440430:intron 35.0%
TGAAGACCTTGTGTTTACTT+TGG + chr3_3:7723057-7723076 Msa0440430:CDS 35.0%
TAGTCTCCAAAGTAAACACA+AGG - chr3_3:7723066-7723085 None:intergenic 35.0%
! GTTTACTTTGGAGACTATTG+TGG + chr3_3:7723069-7723088 Msa0440430:CDS 35.0%
CAAAACAAGGACATCATTCT+TGG - chr3_3:7723180-7723199 None:intergenic 35.0%
!! CAAGAATGATGTCCTTGTTT+TGG + chr3_3:7723178-7723197 Msa0440430:intron 35.0%
!!! AATGATGTCCTTGTTTTGGA+TGG + chr3_3:7723182-7723201 Msa0440430:intron 35.0%
AATACTAGCCATCCAAAACA+AGG - chr3_3:7723193-7723212 None:intergenic 35.0%
GTTAACATGCTACGCATTAT+GGG - chr3_3:7723417-7723436 None:intergenic 35.0%
TGTTAACATGCTACGCATTA+TGG - chr3_3:7723418-7723437 None:intergenic 35.0%
TGTTTATCTGAATGACTCTG+AGG + chr3_3:7723469-7723488 Msa0440430:intron 35.0%
GGAGATTCTACTTGATTGTA+TGG + chr3_3:7723568-7723587 Msa0440430:intron 35.0%
! CTACTTGATTGTATGGATTG+GGG + chr3_3:7723575-7723594 Msa0440430:intron 35.0%
TTTCTCTCCAACAATATCAC+TGG + chr3_3:7723693-7723712 Msa0440430:CDS 35.0%
!!! CAAAGTACTGAACTTTTGGA+AGG - chr3_3:7723833-7723852 None:intergenic 35.0%
CTTCCAAAAGTTCAGTACTT+TGG + chr3_3:7723831-7723850 Msa0440430:intron 35.0%
!!! AGTCCAAAGTACTGAACTTT+TGG - chr3_3:7723837-7723856 None:intergenic 35.0%
! GAGATTATCTTCAGGTTTAC+TGG - chr3_3:7723910-7723929 None:intergenic 35.0%
TGCAGATATTATGGTTCCTT+TGG + chr3_3:7724145-7724164 Msa0440430:intron 35.0%
ATTGAACGTTTGCATAGAAC+TGG + chr3_3:7724518-7724537 Msa0440430:CDS 35.0%
GAAATGTCTTCTCATTCAAG+TGG + chr3_3:7724553-7724572 Msa0440430:CDS 35.0%
! CTTAAAAGCTGGATTTTCGA+TGG + chr3_3:7724641-7724660 Msa0440430:intron 35.0%
! CATGGGTTGAAAAGAAAACA+TGG - chr3_3:7724676-7724695 None:intergenic 35.0%
ACCAAATGCAACTTCATAAG+AGG + chr3_3:7724949-7724968 Msa0440430:intron 35.0%
TCCTCTTATGAAGTTGCATT+TGG - chr3_3:7724953-7724972 None:intergenic 35.0%
CAATATGCTAAGAGTCAATG+TGG - chr3_3:7725016-7725035 None:intergenic 35.0%
! GTGTGCGTGCTAATTTTAAA+AGG + chr3_3:7725106-7725125 Msa0440430:CDS 35.0%
TATTGTGTGTAGCTATGTGA+AGG + chr3_3:7725210-7725229 Msa0440430:intron 35.0%
!!! CTATTTTTATGCAGGGAACA+TGG + chr3_3:7725255-7725274 Msa0440430:intron 35.0%
AGAAAATGACGACGATGATA+TGG + chr3_3:7725591-7725610 Msa0440430:CDS 35.0%
! TCAAACTGATGATGAAGATG+AGG + chr3_3:7725621-7725640 Msa0440430:CDS 35.0%
AGTCTTCGGAATTATATCCA+CGG - chr3_3:7725738-7725757 None:intergenic 35.0%
GCAAATGTTCTTTGAGTCTT+CGG - chr3_3:7725752-7725771 None:intergenic 35.0%
AAATGGCGAATACTTCTACT+GGG - chr3_3:7726265-7726284 None:intergenic 35.0%
AAAATGGCGAATACTTCTAC+TGG - chr3_3:7726266-7726285 None:intergenic 35.0%
TAGTTCAGTGAACCTACATA+AGG + chr3_3:7726337-7726356 Msa0440430:intron 35.0%
CATTTGCAATGTCATCCAAT+AGG + chr3_3:7726582-7726601 Msa0440430:intron 35.0%
AAGGATCCACTTCATCAATT+GGG - chr3_3:7726675-7726694 None:intergenic 35.0%
AAAGGATCCACTTCATCAAT+TGG - chr3_3:7726676-7726695 None:intergenic 35.0%
TGCACCTTAAAGCATGTTAA+AGG + chr3_3:7726734-7726753 Msa0440430:intron 35.0%
GATAAGAGAACTCAAGTGTT+TGG - chr3_3:7726877-7726896 None:intergenic 35.0%
TCTTATCAAGCTCTTGCAAA+TGG + chr3_3:7726890-7726909 Msa0440430:CDS 35.0%
TGAGATTGAGAAGGAAAAGT+CGG + chr3_3:7726943-7726962 Msa0440430:CDS 35.0%
! ACCACAGATTCTTAAGCTTT+TGG + chr3_3:7726980-7726999 Msa0440430:exon 35.0%
TCCAAAAGCTTAAGAATCTG+TGG - chr3_3:7726984-7727003 None:intergenic 35.0%
GAGGGTTGCATATTTATTTC+AGG + chr3_3:7727080-7727099 Msa0440430:intron 35.0%
!! CAACATCCTCTGAAATCAAT+GGG - chr3_3:7727193-7727212 None:intergenic 35.0%
!!! ACTCCTTTTCACTTTTTTCG+TGG + chr3_3:7727291-7727310 Msa0440430:three_prime_UTR 35.0%
GATCCACGAAAAAAGTGAAA+AGG - chr3_3:7727297-7727316 None:intergenic 35.0%
AATTTACCCATCTATGTGAC+AGG - chr3_3:7727424-7727443 None:intergenic 35.0%
TGTCACATAGATGGGTAAAT+TGG + chr3_3:7727423-7727442 Msa0440430:three_prime_UTR 35.0%
GTCACATAGATGGGTAAATT+GGG + chr3_3:7727424-7727443 Msa0440430:three_prime_UTR 35.0%
TCACATAGATGGGTAAATTG+GGG + chr3_3:7727425-7727444 Msa0440430:three_prime_UTR 35.0%
AAATTGCCTATACCAACCAT+TGG - chr3_3:7727454-7727473 None:intergenic 35.0%
CACTGGATTTATACTCTCAA+CGG - chr3_3:7727541-7727560 None:intergenic 35.0%
TAGAAAAGTTATGGAGTGAC+TGG - chr3_3:7727618-7727637 None:intergenic 35.0%
CGTCTGTCAGTAAACTAACT+AGG + chr3_3:7719543-7719562 Msa0440430:five_prime_UTR 40.0%
TCCGAATCCGAATGAAAGAA+AGG + chr3_3:7719622-7719641 Msa0440430:CDS 40.0%
GCCTTTCTTTCATTCGGATT+CGG - chr3_3:7719626-7719645 None:intergenic 40.0%
TCAGCAGCCTTTCTTTCATT+CGG - chr3_3:7719632-7719651 None:intergenic 40.0%
AAAGAAAGGCTGCTGAACAA+AGG + chr3_3:7719636-7719655 Msa0440430:CDS 40.0%
GAAGATGATTGGGTGCATAT+TGG - chr3_3:7719673-7719692 None:intergenic 40.0%
TCGCCGATAAAGACTTTGTT+AGG + chr3_3:7719822-7719841 Msa0440430:CDS 40.0%
CTCAAAAGAGAAGGAAGTTG+AGG - chr3_3:7719869-7719888 None:intergenic 40.0%
! CTCAACTTCCTTCTCTTTTG+AGG + chr3_3:7719867-7719886 Msa0440430:CDS 40.0%
GTTGAACCCTGAAAATGGAA+TGG - chr3_3:7719958-7719977 None:intergenic 40.0%
!! TCCATTTTCAGGGTTCAACT+TGG + chr3_3:7719959-7719978 Msa0440430:intron 40.0%
! ACCAAGTTGAACCCTGAAAA+TGG - chr3_3:7719963-7719982 None:intergenic 40.0%
AAGAATGCGGAGAACGAATA+AGG - chr3_3:7720089-7720108 None:intergenic 40.0%
TCGTGAATAATGTGATAGGC+AGG - chr3_3:7720151-7720170 None:intergenic 40.0%
AGATCAGCTACTTGAATGGA+TGG - chr3_3:7720226-7720245 None:intergenic 40.0%
GATGAGATCAGCTACTTGAA+TGG - chr3_3:7720230-7720249 None:intergenic 40.0%
ATCCTGATCTTCGCAAATCA+TGG + chr3_3:7720468-7720487 Msa0440430:CDS 40.0%
TCCTGATCTTCGCAAATCAT+GGG + chr3_3:7720469-7720488 Msa0440430:CDS 40.0%
!!! GAGCAAATGCCTTGTTTTCA+GGG - chr3_3:7720653-7720672 None:intergenic 40.0%
!!! TGAGCAAATGCCTTGTTTTC+AGG - chr3_3:7720654-7720673 None:intergenic 40.0%
TGTTTCACAAGCATTATGCG+GGG + chr3_3:7720676-7720695 Msa0440430:CDS 40.0%
!! AGTAGGTTGATAACTCTGTC+AGG - chr3_3:7720759-7720778 None:intergenic 40.0%
CCTTTCCTAACATACTCATG+TGG - chr3_3:7721093-7721112 None:intergenic 40.0%
CCACATGAGTATGTTAGGAA+AGG + chr3_3:7721090-7721109 Msa0440430:CDS 40.0%
GAGTATGTTAGGAAAGGCTA+TGG + chr3_3:7721096-7721115 Msa0440430:CDS 40.0%
! CGTGGATTTTATGAGTGAGT+TGG + chr3_3:7721243-7721262 Msa0440430:CDS 40.0%
GTGCTTCATCATACCTAGAA+TGG - chr3_3:7721399-7721418 None:intergenic 40.0%
! ATGAAGCACCAGTAGAATAC+AGG + chr3_3:7721410-7721429 Msa0440430:CDS 40.0%
! AGGTCTTATAGGCAGAAAGA+TGG + chr3_3:7721430-7721449 Msa0440430:CDS 40.0%
!! ATGGAGCTCTTCTTGCTATT+GGG + chr3_3:7721449-7721468 Msa0440430:CDS 40.0%
TTGTATAGGAAACCGTACCT+TGG - chr3_3:7721584-7721603 None:intergenic 40.0%
GGCCGTCTTAACAAATTTGT+AGG + chr3_3:7721710-7721729 Msa0440430:intron 40.0%
GGCCCAGATATAGTCTTTAA+AGG + chr3_3:7721731-7721750 Msa0440430:intron 40.0%
ATCCGATTGCAATACTTCAG+AGG - chr3_3:7721877-7721896 None:intergenic 40.0%
! TTTGGGCCCCAAAAATTTTG+AGG + chr3_3:7721962-7721981 Msa0440430:intron 40.0%
! CATGTTCTTTTGTGTGGACA+GGG - chr3_3:7722027-7722046 None:intergenic 40.0%
! GATTTGGGTGCTACAAAAGT+TGG + chr3_3:7722074-7722093 Msa0440430:intron 40.0%
! TTTGGGTGCTACAAAAGTTG+GGG + chr3_3:7722076-7722095 Msa0440430:intron 40.0%
!! TGGGGCATCCAAGTTTTAAT+AGG + chr3_3:7722094-7722113 Msa0440430:intron 40.0%
TTCTTTCAAGGAAAGTCAGG+AGG - chr3_3:7722236-7722255 None:intergenic 40.0%
TCCTGACTTTCCTTGAAAGA+AGG + chr3_3:7722235-7722254 Msa0440430:intron 40.0%
ACCTTCTTTCAAGGAAAGTC+AGG - chr3_3:7722239-7722258 None:intergenic 40.0%
TCCTTGAAAGAAGGTAAGAG+AGG + chr3_3:7722244-7722263 Msa0440430:intron 40.0%
TCCTCTCTTACCTTCTTTCA+AGG - chr3_3:7722248-7722267 None:intergenic 40.0%
ACATGTTGGGTTATAGCCAA+GGG + chr3_3:7722428-7722447 Msa0440430:intron 40.0%
CTGATCTGAGAAGCTAATGT+GGG - chr3_3:7722683-7722702 None:intergenic 40.0%
TCTGATCTGAGAAGCTAATG+TGG - chr3_3:7722684-7722703 None:intergenic 40.0%
AGATCAGAACAATTTCCGGA+AGG + chr3_3:7722696-7722715 Msa0440430:CDS 40.0%
AAAACAGAATCAATGCGGAC+AGG - chr3_3:7722763-7722782 None:intergenic 40.0%
! TTTTCATGCACGTACCATCA+AGG - chr3_3:7722943-7722962 None:intergenic 40.0%
GAGACTATTGTGGACAAGTT+TGG + chr3_3:7723079-7723098 Msa0440430:CDS 40.0%
! GGACAAGTTTGGTGAAGAAA+TGG + chr3_3:7723090-7723109 Msa0440430:CDS 40.0%
AAATGGCACCTTATGCACTT+GGG + chr3_3:7723107-7723126 Msa0440430:CDS 40.0%
ACTTGGGCTATGCCAAAATT+TGG + chr3_3:7723123-7723142 Msa0440430:CDS 40.0%
GCTCTTTCCTTTCTCAACAA+AGG + chr3_3:7723230-7723249 Msa0440430:intron 40.0%
! CGCTGATGATTCAAGTTCAA+TGG + chr3_3:7723299-7723318 Msa0440430:CDS 40.0%
ATGTTAACAACCGATGGTCA+AGG + chr3_3:7723429-7723448 Msa0440430:CDS 40.0%
TAAGGGAATACCTTGACCAT+CGG - chr3_3:7723442-7723461 None:intergenic 40.0%
CACATGTCCAGTGATATTGT+TGG - chr3_3:7723703-7723722 None:intergenic 40.0%
CAACAATATCACTGGACATG+TGG + chr3_3:7723701-7723720 Msa0440430:CDS 40.0%
GATAGTGCTTCCATCATCAA+TGG - chr3_3:7723736-7723755 None:intergenic 40.0%
!! TGATGGAAGCACTATCAGAT+TGG + chr3_3:7723740-7723759 Msa0440430:CDS 40.0%
!! GATGGAAGCACTATCAGATT+GGG + chr3_3:7723741-7723760 Msa0440430:CDS 40.0%
CCATAGCTGAGATTATCTTC+AGG - chr3_3:7723918-7723937 None:intergenic 40.0%
CCTGAAGATAATCTCAGCTA+TGG + chr3_3:7723915-7723934 Msa0440430:intron 40.0%
ACTTAAATGTCAGAGCAACC+AGG - chr3_3:7724067-7724086 None:intergenic 40.0%
!! CACAAACACTGTTGATAGTC+AGG - chr3_3:7724218-7724237 None:intergenic 40.0%
CTGACTATCAACAGTGTTTG+TGG + chr3_3:7724216-7724235 Msa0440430:CDS 40.0%
ATTGTCTTCCTAAACTGCAG+AGG + chr3_3:7724455-7724474 Msa0440430:CDS 40.0%
GTCTTCTCATTCAAGTGGTA+AGG + chr3_3:7724558-7724577 Msa0440430:intron 40.0%
TCTTGACTTCTTGCAGCATT+TGG - chr3_3:7725080-7725099 None:intergenic 40.0%
AGTAAGTAATTGAGGCAAGG+AGG - chr3_3:7725159-7725178 None:intergenic 40.0%
TGGAGTAAGTAATTGAGGCA+AGG - chr3_3:7725162-7725181 None:intergenic 40.0%
TCCTCAACATGTCAGAGTTA+CGG - chr3_3:7725470-7725489 None:intergenic 40.0%
AATGACGACGATGATATGGA+CGG + chr3_3:7725595-7725614 Msa0440430:CDS 40.0%
!! TTAAGCAAAAGTTCTGGGCA+GGG - chr3_3:7726225-7726244 None:intergenic 40.0%
!! TTTAAGCAAAAGTTCTGGGC+AGG - chr3_3:7726226-7726245 None:intergenic 40.0%
ATCGGTTAAGCACCTTATGT+AGG - chr3_3:7726352-7726371 None:intergenic 40.0%
CACAAAATTGTGTAGCTGGA+TGG - chr3_3:7726383-7726402 None:intergenic 40.0%
! CATCCAGCTACACAATTTTG+TGG + chr3_3:7726381-7726400 Msa0440430:intron 40.0%
CAACCACAAAATTGTGTAGC+TGG - chr3_3:7726387-7726406 None:intergenic 40.0%
! AATTTTGTGGTTGAACCAGC+TGG + chr3_3:7726394-7726413 Msa0440430:intron 40.0%
TCCAATAGGAAACGTCATTC+AGG + chr3_3:7726596-7726615 Msa0440430:intron 40.0%
AGGATCCACTTCATCAATTG+GGG - chr3_3:7726674-7726693 None:intergenic 40.0%
!! CATGCTTTAAGGTGCAGTAT+CGG - chr3_3:7726730-7726749 None:intergenic 40.0%
TGCAATCATCAGATCCAATG+AGG + chr3_3:7726837-7726856 Msa0440430:CDS 40.0%
!!! GTCAGGTTTTGAAACCTCAT+TGG - chr3_3:7726854-7726873 None:intergenic 40.0%
! AGCTTTTGGATGTACGTTGT+TGG + chr3_3:7726994-7727013 Msa0440430:intron 40.0%
TCTTACAAAGAATGGGTGCA+AGG - chr3_3:7727054-7727073 None:intergenic 40.0%
!! CCAACATCCTCTGAAATCAA+TGG - chr3_3:7727194-7727213 None:intergenic 40.0%
!! CCATTGATTTCAGAGGATGT+TGG + chr3_3:7727191-7727210 Msa0440430:three_prime_UTR 40.0%
TTTCAGAGGATGTTGGATTC+AGG + chr3_3:7727198-7727217 Msa0440430:three_prime_UTR 40.0%
ATGTTGGATTCAGGAAACTG+TGG + chr3_3:7727207-7727226 Msa0440430:three_prime_UTR 40.0%
GAAAAGGAGTAGAACAACGA+CGG - chr3_3:7727281-7727300 None:intergenic 40.0%
TCTTCTACCTGTCACATAGA+TGG + chr3_3:7727414-7727433 Msa0440430:three_prime_UTR 40.0%
CTTCTACCTGTCACATAGAT+GGG + chr3_3:7727415-7727434 Msa0440430:three_prime_UTR 40.0%
CTGTTAAACGCATTGCTGAT+GGG - chr3_3:7727564-7727583 None:intergenic 40.0%
GTGAAGCAAAGAAGAGGAAG+TGG + chr3_3:7719436-7719455 Msa0440430:five_prime_UTR 45.0%
CAAAGAAGAGGAAGTGGAGT+GGG + chr3_3:7719442-7719461 Msa0440430:five_prime_UTR 45.0%
AAAGAAGAGGAAGTGGAGTG+GGG + chr3_3:7719443-7719462 Msa0440430:five_prime_UTR 45.0%
AGTTTACTGACAGACGGAGA+GGG - chr3_3:7719539-7719558 None:intergenic 45.0%
TAGTTTACTGACAGACGGAG+AGG - chr3_3:7719540-7719559 None:intergenic 45.0%
AAAGGCTGCTGAACAAAGGT+TGG + chr3_3:7719640-7719659 Msa0440430:CDS 45.0%
GAAAGAGATTGAGTGAGCAG+TGG - chr3_3:7719804-7719823 None:intergenic 45.0%
AATCAAGAAGATGGGGACAG+TGG - chr3_3:7720024-7720043 None:intergenic 45.0%
ACTGTCCCCATCTTCTTGAT+TGG + chr3_3:7720023-7720042 Msa0440430:CDS 45.0%
GAATGGATGGATCAGGAATC+TGG - chr3_3:7720213-7720232 None:intergenic 45.0%
GCTACTTGAATGGATGGATC+AGG - chr3_3:7720220-7720239 None:intergenic 45.0%
TTGCGAAGATCAGGATCAAC+AGG - chr3_3:7720464-7720483 None:intergenic 45.0%
CCTGATCTTCGCAAATCATG+GGG + chr3_3:7720470-7720489 Msa0440430:CDS 45.0%
ATCTTCGCAAATCATGGGGT+TGG + chr3_3:7720474-7720493 Msa0440430:CDS 45.0%
! GCATTATGCGGGGAAGATTT+TGG + chr3_3:7720686-7720705 Msa0440430:CDS 45.0%
CTGTTGAATGTCATTCGAGC+AGG + chr3_3:7720723-7720742 Msa0440430:CDS 45.0%
TTGAATGTCATTCGAGCAGG+TGG + chr3_3:7720726-7720745 Msa0440430:CDS 45.0%
AAAAGAAGAACGTCAAGCCG+AGG - chr3_3:7721009-7721028 None:intergenic 45.0%
CTCACTCATAAAATCCACGG+AGG - chr3_3:7721242-7721261 None:intergenic 45.0%
! GATGGAGCTCTTCTTGCTAT+TGG + chr3_3:7721448-7721467 Msa0440430:CDS 45.0%
GAAGCTTGTGTTTGGGTGTA+TGG - chr3_3:7721850-7721869 None:intergenic 45.0%
ATTGCAATACTTCAGAGGCG+CGG - chr3_3:7721872-7721891 None:intergenic 45.0%
!! CGCCTCTGAAGTATTGCAAT+CGG + chr3_3:7721872-7721891 Msa0440430:intron 45.0%
! ACCGGGCCTCAAAATTTTTG+GGG - chr3_3:7721971-7721990 None:intergenic 45.0%
! CACCGGGCCTCAAAATTTTT+GGG - chr3_3:7721972-7721991 None:intergenic 45.0%
! TCACCGGGCCTCAAAATTTT+TGG - chr3_3:7721973-7721992 None:intergenic 45.0%
! GCATGTTCTTTTGTGTGGAC+AGG - chr3_3:7722028-7722047 None:intergenic 45.0%
!!! TTTTTTTCATCGCACGGGTG+TGG + chr3_3:7722194-7722213 Msa0440430:intron 45.0%
CTTGGCTATAACCCAACATG+TGG - chr3_3:7722429-7722448 None:intergenic 45.0%
CACATGTTGGGTTATAGCCA+AGG + chr3_3:7722427-7722446 Msa0440430:intron 45.0%
!! GCACTAGCTCTACTTCAATG+AGG - chr3_3:7722458-7722477 None:intergenic 45.0%
CAACACATTGCAATGCCTTC+CGG - chr3_3:7722714-7722733 None:intergenic 45.0%
GCATTGCAATGTGTTGTCTG+TGG + chr3_3:7722718-7722737 Msa0440430:CDS 45.0%
GAAATGGCACCTTATGCACT+TGG + chr3_3:7723106-7723125 Msa0440430:CDS 45.0%
! CAACAAAGGCTGCTGCATTT+TGG + chr3_3:7723244-7723263 Msa0440430:intron 45.0%
TCAAGTTCAATGGCTGCAGT+TGG + chr3_3:7723309-7723328 Msa0440430:CDS 45.0%
CGTAGCATGTTAACAACCGA+TGG + chr3_3:7723423-7723442 Msa0440430:CDS 45.0%
ACTTCTACGCATGCTTACAG+AGG + chr3_3:7723630-7723649 Msa0440430:intron 45.0%
GAACCTTTGGCCATTGATGA+TGG + chr3_3:7723723-7723742 Msa0440430:CDS 45.0%
CTTCCATCATCAATGGCCAA+AGG - chr3_3:7723729-7723748 None:intergenic 45.0%
! GTGCGTGGGTTATAAGAAGT+TGG + chr3_3:7724732-7724751 Msa0440430:intron 45.0%
AACTGCTACGAACCACTTGT+CGG + chr3_3:7724840-7724859 Msa0440430:intron 45.0%
CTGCAAGAAGTCAAGAAGAG+TGG + chr3_3:7725084-7725103 Msa0440430:CDS 45.0%
AGTAATTGAGGCAAGGAGGA+GGG - chr3_3:7725155-7725174 None:intergenic 45.0%
AAGTAATTGAGGCAAGGAGG+AGG - chr3_3:7725156-7725175 None:intergenic 45.0%
CCAGCAAGGATGTTAAACCA+AGG - chr3_3:7725296-7725315 None:intergenic 45.0%
CCTTGGTTTAACATCCTTGC+TGG + chr3_3:7725293-7725312 Msa0440430:CDS 45.0%
TGATCTCCTGGTTGCATACA+AGG + chr3_3:7725374-7725393 Msa0440430:CDS 45.0%
CTTGATCCTTGTATGCAACC+AGG - chr3_3:7725383-7725402 None:intergenic 45.0%
! GCATACAAGGATCAAGTTGC+AGG + chr3_3:7725387-7725406 Msa0440430:CDS 45.0%
TCCGTAACTCTGACATGTTG+AGG + chr3_3:7725466-7725485 Msa0440430:intron 45.0%
GATGAAGATGAGGATGACAG+TGG + chr3_3:7725631-7725650 Msa0440430:CDS 45.0%
!! AGTGGTTCTGACAGGGAAAT+GGG + chr3_3:7725649-7725668 Msa0440430:CDS 45.0%
ATGGGAACTGATGCTGAAGA+TGG + chr3_3:7725667-7725686 Msa0440430:CDS 45.0%
TGGGAACTGATGCTGAAGAT+GGG + chr3_3:7725668-7725687 Msa0440430:CDS 45.0%
AAATTGACTGATCAGGTCCG+TGG + chr3_3:7725718-7725737 Msa0440430:intron 45.0%
AAAGGTTGCAATCTGCACAC+AGG + chr3_3:7725828-7725847 Msa0440430:intron 45.0%
AGCTGGATGGTTTACTGGAT+CGG - chr3_3:7726370-7726389 None:intergenic 45.0%
TGTGTAGCTGGATGGTTTAC+TGG - chr3_3:7726375-7726394 None:intergenic 45.0%
ATAGTTCGACACAAACCAGC+TGG - chr3_3:7726412-7726431 None:intergenic 45.0%
GCCTGAATGACGTTTCCTAT+TGG - chr3_3:7726600-7726619 None:intergenic 45.0%
TCATCTGAGTCCTCATCATC+GGG - chr3_3:7726622-7726641 None:intergenic 45.0%
GTCATCTGAGTCCTCATCAT+CGG - chr3_3:7726623-7726642 None:intergenic 45.0%
ACAGTCCCCAATTGATGAAG+TGG + chr3_3:7726666-7726685 Msa0440430:CDS 45.0%
AGAACTCAAGTGTTTGGGTC+AGG - chr3_3:7726871-7726890 None:intergenic 45.0%
GAGAAGAGGTGAGATTGAGA+AGG + chr3_3:7726934-7726953 Msa0440430:CDS 45.0%
! CAGGCATTTATTTGGCTCAG+CGG + chr3_3:7727099-7727118 Msa0440430:intron 45.0%
! AGCGGTCAAAGTTGGTCTAT+GGG + chr3_3:7727117-7727136 Msa0440430:three_prime_UTR 45.0%
!! GAGGTTCCCATTGATTTCAG+AGG + chr3_3:7727184-7727203 Msa0440430:three_prime_UTR 45.0%
TTTCGTGGATCCTTCCTTTC+AGG + chr3_3:7727306-7727325 Msa0440430:three_prime_UTR 45.0%
ACTTGGCATGGAAACCTGAA+AGG - chr3_3:7727323-7727342 None:intergenic 45.0%
GGTTTCCATGCCAAGTTTCA+CGG + chr3_3:7727327-7727346 Msa0440430:three_prime_UTR 45.0%
ATGCTGGAAACCGTGAAACT+TGG - chr3_3:7727340-7727359 None:intergenic 45.0%
GTTTCACGGTTTCCAGCATA+TGG + chr3_3:7727341-7727360 Msa0440430:three_prime_UTR 45.0%
GAAGCCATTGCTGCACTAAT+CGG - chr3_3:7727375-7727394 None:intergenic 45.0%
CCTGTTAAACGCATTGCTGA+TGG - chr3_3:7727565-7727584 None:intergenic 45.0%
CCATCAGCAATGCGTTTAAC+AGG + chr3_3:7727562-7727581 Msa0440430:three_prime_UTR 45.0%
AAAGTTATGGAGTGACTGGC+TGG - chr3_3:7727614-7727633 None:intergenic 45.0%
!!! AATATATTTTTTTGTATTTA+AGG - chr3_3:7721943-7721962 None:intergenic 5.0%
!!! AAATACAAAAAAATATATTT+TGG + chr3_3:7721944-7721963 Msa0440430:intron 5.0%
!!! AATACAAAAAAATATATTTT+GGG + chr3_3:7721945-7721964 Msa0440430:intron 5.0%
GCGAGTGTGAAGCAAAGAAG+AGG + chr3_3:7719430-7719449 Msa0440430:five_prime_UTR 50.0%
GCAAAGAAGAGGAAGTGGAG+TGG + chr3_3:7719441-7719460 Msa0440430:five_prime_UTR 50.0%
TTGTACAGCTAGCTGAGCTG+AGG + chr3_3:7719479-7719498 Msa0440430:five_prime_UTR 50.0%
AATGGCGGCAACTTGTCTGA+GGG - chr3_3:7719747-7719766 None:intergenic 50.0%
AGTGCGAGTGCAATGGAGAA+TGG - chr3_3:7719909-7719928 None:intergenic 50.0%
AAGAAGATGGGGACAGTGGT+CGG - chr3_3:7720020-7720039 None:intergenic 50.0%
TCAACAGGCTGACCTTCCAA+GGG - chr3_3:7720449-7720468 None:intergenic 50.0%
ATCAACAGGCTGACCTTCCA+AGG - chr3_3:7720450-7720469 None:intergenic 50.0%
! CCCCATGATTTGCGAAGATC+AGG - chr3_3:7720473-7720492 None:intergenic 50.0%
TTCGCAAATCATGGGGTTGG+TGG + chr3_3:7720477-7720496 Msa0440430:CDS 50.0%
GCTGCGAAACCCTGAAAACA+AGG + chr3_3:7720641-7720660 Msa0440430:CDS 50.0%
! GAGCAGCTAATAGGTGTCAC+AGG - chr3_3:7720863-7720882 None:intergenic 50.0%
TGTATACTGTGCTGCAGCCT+CGG + chr3_3:7720989-7721008 Msa0440430:CDS 50.0%
!! TGAGTTGGTTCGAAAGCGCA+GGG + chr3_3:7721258-7721277 Msa0440430:CDS 50.0%
CAACACGTCTTTCCCGAGTT+TGG + chr3_3:7721535-7721554 Msa0440430:CDS 50.0%
CAGTCCTGTTGGCCATCTTA+GGG + chr3_3:7721558-7721577 Msa0440430:CDS 50.0%
!!! GCCCCAAAAATTTTGAGGCC+CGG + chr3_3:7721967-7721986 Msa0440430:intron 50.0%
! TTCTTTTGTGTGGACAGGGC+TGG - chr3_3:7722023-7722042 None:intergenic 50.0%
CTGTGAAAAACAGGCAGCGT+GGG + chr3_3:7722642-7722661 Msa0440430:intron 50.0%
TCAATGCGGACAGGTAGTTC+AGG - chr3_3:7722754-7722773 None:intergenic 50.0%
ACGTACCATCAAGGAGCGAA+GGG - chr3_3:7722934-7722953 None:intergenic 50.0%
TGGCATAGCCCAAGTGCATA+AGG - chr3_3:7723118-7723137 None:intergenic 50.0%
GCAGCAGCCTTTGTTGAGAA+AGG - chr3_3:7723240-7723259 None:intergenic 50.0%
! CAAAGGCTGCTGCATTTTGG+AGG + chr3_3:7723247-7723266 Msa0440430:intron 50.0%
CGCATTATGGGAAGCAAGGT+AGG - chr3_3:7723405-7723424 None:intergenic 50.0%
GCTACGCATTATGGGAAGCA+AGG - chr3_3:7723409-7723428 None:intergenic 50.0%
CACTGGACATGTGGAACCTT+TGG + chr3_3:7723710-7723729 Msa0440430:CDS 50.0%
TAATTTGGCCACCACCTGTC+AGG + chr3_3:7724280-7724299 Msa0440430:intron 50.0%
CTTCCTAAACTGCAGAGGAC+TGG + chr3_3:7724460-7724479 Msa0440430:CDS 50.0%
TACGAGCTACAACAAGTGCG+TGG + chr3_3:7724717-7724736 Msa0440430:intron 50.0%
ACGAGCTACAACAAGTGCGT+GGG + chr3_3:7724718-7724737 Msa0440430:intron 50.0%
!! GGCAAGAAAGTTTGCTGCCT+TGG + chr3_3:7725276-7725295 Msa0440430:CDS 50.0%
CTTCCAGCTGATCAATTGCC+AGG + chr3_3:7725318-7725337 Msa0440430:CDS 50.0%
TCTCCTGGCAATTGATCAGC+TGG - chr3_3:7725324-7725343 None:intergenic 50.0%
AGCTGATCAATTGCCAGGAG+AGG + chr3_3:7725323-7725342 Msa0440430:CDS 50.0%
CAATTGCCAGGAGAGGCTTT+AGG + chr3_3:7725330-7725349 Msa0440430:CDS 50.0%
TGCAACCAGGAGATCAAGAG+TGG - chr3_3:7725370-7725389 None:intergenic 50.0%
CTTTGCAGAAGCTGCAGAAG+AGG + chr3_3:7725555-7725574 Msa0440430:intron 50.0%
!! AGGATGACAGTGGTTCTGAC+AGG + chr3_3:7725641-7725660 Msa0440430:CDS 50.0%
!! GGATGACAGTGGTTCTGACA+GGG + chr3_3:7725642-7725661 Msa0440430:CDS 50.0%
!! CAGTGGTTCTGACAGGGAAA+TGG + chr3_3:7725648-7725667 Msa0440430:CDS 50.0%
GGGAACTGATGCTGAAGATG+GGG + chr3_3:7725669-7725688 Msa0440430:CDS 50.0%
GGGCAGGGAATCATACCTAA+TGG - chr3_3:7726210-7726229 None:intergenic 50.0%
TCTTCTCGTCTCAGCATGCT+GGG - chr3_3:7726921-7726940 None:intergenic 50.0%
! TTTGGCTCAGCGGTCAAAGT+TGG + chr3_3:7727109-7727128 Msa0440430:three_prime_UTR 50.0%
! CAGCGGTCAAAGTTGGTCTA+TGG + chr3_3:7727116-7727135 Msa0440430:three_prime_UTR 50.0%
CCTCAGCATACTAAACTCGC+AGG - chr3_3:7727168-7727187 None:intergenic 50.0%
CCTGCGAGTTTAGTATGCTG+AGG + chr3_3:7727165-7727184 Msa0440430:three_prime_UTR 50.0%
ACTGTGGAGTTTAGCGCTTC+TGG + chr3_3:7727223-7727242 Msa0440430:three_prime_UTR 50.0%
GGCATGGAAACCTGAAAGGA+AGG - chr3_3:7727319-7727338 None:intergenic 50.0%
GGAAACCGTGAAACTTGGCA+TGG - chr3_3:7727335-7727354 None:intergenic 50.0%
TCGGACAGGATTCCATATGC+TGG - chr3_3:7727356-7727375 None:intergenic 50.0%
CATTGCTGCACTAATCGGAC+AGG - chr3_3:7727370-7727389 None:intergenic 50.0%
CTGTCCGATTAGTGCAGCAA+TGG + chr3_3:7727368-7727387 Msa0440430:three_prime_UTR 50.0%
AAATTGGGGCTGCCAATGGT+TGG + chr3_3:7727439-7727458 Msa0440430:three_prime_UTR 50.0%
AGCTAGCTGAGCTGAGGAAG+AGG + chr3_3:7719485-7719504 Msa0440430:five_prime_UTR 55.0%
GCTAGCTGAGCTGAGGAAGA+GGG + chr3_3:7719486-7719505 Msa0440430:five_prime_UTR 55.0%
CTAGCTGAGCTGAGGAAGAG+GGG + chr3_3:7719487-7719506 Msa0440430:five_prime_UTR 55.0%
GAATGGCGGCAACTTGTCTG+AGG - chr3_3:7719748-7719767 None:intergenic 55.0%
GGGACAGTGGTCGGGATAAT+CGG - chr3_3:7720011-7720030 None:intergenic 55.0%
AGAAGATGGGGACAGTGGTC+GGG - chr3_3:7720019-7720038 None:intergenic 55.0%
ATTGGAGAGGCCTGTTCCCT+TGG + chr3_3:7720430-7720449 Msa0440430:CDS 55.0%
AAATCCACGGAGGCAGTCCT+AGG - chr3_3:7721232-7721251 None:intergenic 55.0%
!! GTGAGTTGGTTCGAAAGCGC+AGG + chr3_3:7721257-7721276 Msa0440430:CDS 55.0%
CCAACAGGACTGCCAAACTC+GGG - chr3_3:7721550-7721569 None:intergenic 55.0%
GCCAACAGGACTGCCAAACT+CGG - chr3_3:7721551-7721570 None:intergenic 55.0%
GCAGTCCTGTTGGCCATCTT+AGG + chr3_3:7721557-7721576 Msa0440430:CDS 55.0%
TTGGCCCTAAGATGGCCAAC+AGG - chr3_3:7721565-7721584 None:intergenic 55.0%
TGTTGGCCATCTTAGGGCCA+AGG + chr3_3:7721564-7721583 Msa0440430:CDS 55.0%
GCCATCTTAGGGCCAAGGTA+CGG + chr3_3:7721569-7721588 Msa0440430:intron 55.0%
ACCGTACCTTGGCCCTAAGA+TGG - chr3_3:7721573-7721592 None:intergenic 55.0%
TGTTAAGACGGCCCTGTGTG+TGG - chr3_3:7721703-7721722 None:intergenic 55.0%
AGGCGCGGAAGCTTGTGTTT+GGG - chr3_3:7721857-7721876 None:intergenic 55.0%
ACTTCAATGAGGCTCGCCCT+TGG - chr3_3:7722447-7722466 None:intergenic 55.0%
!! CCACGCTGCCTGTTTTTCAC+AGG - chr3_3:7722644-7722663 None:intergenic 55.0%
CCTGTGAAAAACAGGCAGCG+TGG + chr3_3:7722641-7722660 Msa0440430:intron 55.0%
CTTCTCCCTTCGCTCCTTGA+TGG + chr3_3:7722926-7722945 Msa0440430:CDS 55.0%
CACGTACCATCAAGGAGCGA+AGG - chr3_3:7722935-7722954 None:intergenic 55.0%
CCACCAGTCCTCTGCAGTTT+AGG - chr3_3:7724466-7724485 None:intergenic 55.0%
CCTAAACTGCAGAGGACTGG+TGG + chr3_3:7724463-7724482 Msa0440430:CDS 55.0%
TGAGATACGGCTCAACCCAG+TGG - chr3_3:7724490-7724509 None:intergenic 55.0%
!! ATCAGCTGGAAGTGCCAGCA+AGG - chr3_3:7725310-7725329 None:intergenic 55.0%
CAAGAGTGGCACGGAATACC+CGG - chr3_3:7725356-7725375 None:intergenic 55.0%
CCAGGAGATCAAGAGTGGCA+CGG - chr3_3:7725365-7725384 None:intergenic 55.0%
TGCAGAAGCTGCAGAAGAGG+AGG + chr3_3:7725558-7725577 Msa0440430:intron 55.0%
GTCATTCAGGCCCGATGATG+AGG + chr3_3:7726609-7726628 Msa0440430:CDS 55.0%
CTCTTCTCGTCTCAGCATGC+TGG - chr3_3:7726922-7726941 None:intergenic 55.0%
CAGCATGCTGAGACGAGAAG+AGG + chr3_3:7726920-7726939 Msa0440430:CDS 55.0%
GGGTAAATTGGGGCTGCCAA+TGG + chr3_3:7727435-7727454 Msa0440430:three_prime_UTR 55.0%
! GGGCTGCCAATGGTTGGTAT+AGG + chr3_3:7727445-7727464 Msa0440430:three_prime_UTR 55.0%
! AACGCATTGCTGATGGGCAC+TGG - chr3_3:7727558-7727577 None:intergenic 55.0%
GAGTGCGAGTGCGAGTGCAA+TGG - chr3_3:7719916-7719935 None:intergenic 60.0%
GAGAGGCCTGTTCCCTTGGA+AGG + chr3_3:7720434-7720453 Msa0440430:CDS 60.0%
GGCTGACCTTCCAAGGGAAC+AGG - chr3_3:7720443-7720462 None:intergenic 60.0%
TAGTCCTAGGACTGCCTCCG+TGG + chr3_3:7721225-7721244 Msa0440430:CDS 60.0%
CCCGAGTTTGGCAGTCCTGT+TGG + chr3_3:7721547-7721566 Msa0440430:CDS 60.0%
GAGGCGCGGAAGCTTGTGTT+TGG - chr3_3:7721858-7721877 None:intergenic 60.0%
TCGAGGCTGGGCTATGTCAC+CGG - chr3_3:7721989-7722008 None:intergenic 60.0%
GTGACATAGCCCAGCCTCGA+CGG + chr3_3:7721989-7722008 Msa0440430:intron 60.0%
TGACATAGCCCAGCCTCGAC+GGG + chr3_3:7721990-7722009 Msa0440430:intron 60.0%
! AAACAGGCAGCGTGGGTTGC+AGG + chr3_3:7722649-7722668 Msa0440430:intron 60.0%
ACTCCAGTCCTGACAGGTGG+TGG - chr3_3:7724291-7724310 None:intergenic 60.0%
ACCACCTGTCAGGACTGGAG+TGG + chr3_3:7724290-7724309 Msa0440430:intron 60.0%
CCACCTGTCAGGACTGGAGT+GGG + chr3_3:7724291-7724310 Msa0440430:intron 60.0%
GATCCCACTCCAGTCCTGAC+AGG - chr3_3:7724297-7724316 None:intergenic 60.0%
GTCAGGACTGGAGTGGGATC+TGG + chr3_3:7724297-7724316 Msa0440430:intron 60.0%
! CAGAGGACTGGTGGACCACT+GGG + chr3_3:7724472-7724491 Msa0440430:CDS 60.0%
!! TGCCAGGAGAGGCTTTAGGC+CGG + chr3_3:7725334-7725353 Msa0440430:CDS 60.0%
! CCGTGCCACTCTTGATCTCC+TGG + chr3_3:7725362-7725381 Msa0440430:CDS 60.0%
CGAGGCTGGGCTATGTCACC+GGG - chr3_3:7721988-7722007 None:intergenic 65.0%
TGGCCACCACCTGTCAGGAC+TGG + chr3_3:7724285-7724304 Msa0440430:intron 65.0%
CCCACTCCAGTCCTGACAGG+TGG - chr3_3:7724294-7724313 None:intergenic 65.0%
! GCAGAGGACTGGTGGACCAC+TGG + chr3_3:7724471-7724490 Msa0440430:CDS 65.0%
!! GCCAGGAGAGGCTTTAGGCC+GGG + chr3_3:7725335-7725354 Msa0440430:CDS 65.0%
ACCCGGCCTAAAGCCTCTCC+TGG - chr3_3:7725339-7725358 None:intergenic 65.0%
!! AGCCCAGCCTCGACGGGCTA+TGG + chr3_3:7721996-7722015 Msa0440430:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG + chr3_3:7721997-7722016 Msa0440430:intron 70.0%
GCCCATAGCCCGTCGAGGCT+GGG - chr3_3:7722001-7722020 None:intergenic 70.0%
GGCCCATAGCCCGTCGAGGC+TGG - chr3_3:7722002-7722021 None:intergenic 75.0%
! GGCTGGCCCATAGCCCGTCG+AGG - chr3_3:7722006-7722025 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 7719417 7727690 7719417 ID=Msa0440430;Name=Msa0440430
chr3_3 mRNA 7719417 7727690 7719417 ID=Msa0440430-mRNA-1;Parent=Msa0440430;Name=Msa0440430-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.94|0.95|1|0.84|0.8|20|599|1032
chr3_3 exon 7719417 7719888 7719417 ID=Msa0440430-mRNA-1:exon:1595;Parent=Msa0440430-mRNA-1
chr3_3 exon 7719970 7720285 7719970 ID=Msa0440430-mRNA-1:exon:1596;Parent=Msa0440430-mRNA-1
chr3_3 exon 7720362 7720546 7720362 ID=Msa0440430-mRNA-1:exon:1597;Parent=Msa0440430-mRNA-1
chr3_3 exon 7720626 7720799 7720626 ID=Msa0440430-mRNA-1:exon:1598;Parent=Msa0440430-mRNA-1
chr3_3 exon 7720972 7721117 7720972 ID=Msa0440430-mRNA-1:exon:1599;Parent=Msa0440430-mRNA-1
chr3_3 exon 7721206 7721329 7721206 ID=Msa0440430-mRNA-1:exon:1600;Parent=Msa0440430-mRNA-1
chr3_3 exon 7721405 7721585 7721405 ID=Msa0440430-mRNA-1:exon:1601;Parent=Msa0440430-mRNA-1
chr3_3 exon 7722655 7722817 7722655 ID=Msa0440430-mRNA-1:exon:1602;Parent=Msa0440430-mRNA-1
chr3_3 exon 7722906 7722947 7722906 ID=Msa0440430-mRNA-1:exon:1603;Parent=Msa0440430-mRNA-1
chr3_3 exon 7723026 7723144 7723026 ID=Msa0440430-mRNA-1:exon:1604;Parent=Msa0440430-mRNA-1
chr3_3 exon 7723252 7723450 7723252 ID=Msa0440430-mRNA-1:exon:1605;Parent=Msa0440430-mRNA-1
chr3_3 exon 7723650 7723781 7723650 ID=Msa0440430-mRNA-1:exon:1606;Parent=Msa0440430-mRNA-1
chr3_3 exon 7724150 7724253 7724150 ID=Msa0440430-mRNA-1:exon:1607;Parent=Msa0440430-mRNA-1
chr3_3 exon 7724395 7724574 7724395 ID=Msa0440430-mRNA-1:exon:1608;Parent=Msa0440430-mRNA-1
chr3_3 exon 7724988 7725127 7724988 ID=Msa0440430-mRNA-1:exon:1609;Parent=Msa0440430-mRNA-1
chr3_3 exon 7725269 7725408 7725269 ID=Msa0440430-mRNA-1:exon:1610;Parent=Msa0440430-mRNA-1
chr3_3 exon 7725563 7725732 7725563 ID=Msa0440430-mRNA-1:exon:1611;Parent=Msa0440430-mRNA-1
chr3_3 exon 7726604 7726721 7726604 ID=Msa0440430-mRNA-1:exon:1612;Parent=Msa0440430-mRNA-1
chr3_3 exon 7726834 7727004 7726834 ID=Msa0440430-mRNA-1:exon:1613;Parent=Msa0440430-mRNA-1
chr3_3 exon 7727102 7727690 7727102 ID=Msa0440430-mRNA-1:exon:1614;Parent=Msa0440430-mRNA-1
chr3_3 five_prime_UTR 7719417 7719583 7719417 ID=Msa0440430-mRNA-1:five_prime_utr;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7719584 7719888 7719584 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7719970 7720285 7719970 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7720362 7720546 7720362 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7720626 7720799 7720626 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7720972 7721117 7720972 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7721206 7721329 7721206 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7721405 7721585 7721405 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7722655 7722817 7722655 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7722906 7722947 7722906 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7723026 7723144 7723026 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7723252 7723450 7723252 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7723650 7723781 7723650 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7724150 7724253 7724150 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7724395 7724574 7724395 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7724988 7725127 7724988 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7725269 7725408 7725269 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7725563 7725732 7725563 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7726604 7726721 7726604 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 CDS 7726834 7726994 7726834 ID=Msa0440430-mRNA-1:cds;Parent=Msa0440430-mRNA-1
chr3_3 three_prime_UTR 7726995 7727004 7726995 ID=Msa0440430-mRNA-1:three_prime_utr;Parent=Msa0440430-mRNA-1
chr3_3 three_prime_UTR 7727102 7727690 7727102 ID=Msa0440430-mRNA-1:three_prime_utr;Parent=Msa0440430-mRNA-1
Gene Sequence

>Msa0440430

ATGGATGAAGTAGTTGTTATACTTGAAGGAACTCTGAGTCCGAATCCGAATGAAAGAAAGGCTGCTGAACAAAGGTTGGATGAGATCCAATATGCACCCAATCATCTTCCAACTCTTTTACAAATCATCGTTCAATCAGACGATTCTGTCTCTGATATTTCCCTCAGACAAGTTGCCGCCATTCATTTCAAAAACTTCATTGCTAAGAATTGGTCTTCCACTGCTCACTCAATCTCTTTCGCCGATAAAGACTTTGTTAGGAATCACATTCTCCTCTTTTTACCTCAACTTCCTTCTCTTTTGAGGGTTCAACTTGGTGAGTGCCTCAAAACTATTCTTCATTCCGATTATCCCGACCACTGTCCCCATCTTCTTGATTGGATCAAACATAATTTACACGATCAACAACATCTCTATTCTGCCTTATTCGTTCTCCGCATTCTTTCTATTAAATATGAATTCAAATCAGACGAAGATAGGACTCCTGCCTATCACATTATTCACGAGACATTTCCCCACCTTCTCAATATATTTAACACACTTCTCCAGATTCCTGATCCATCCATTCAAGTAGCTGATCTCATCAAGCTTATCTGTAAAATATTCTGGTCCTCTATATATTTGGAGATTCCAAAGCTTTTGTTTGATCAAAATGTATTCAGTGCTTGGATGGTGCTGTTTTTAAATGTATTGGAGAGGCCTGTTCCCTTGGAAGGTCAGCCTGTTGATCCTGATCTTCGCAAATCATGGGGTTGGTGGAAACTCAAAAAATGGACAATTCACATTCTAAACAGACTCTACACTCGTTTTGGTGACTTGAAGCTGCGAAACCCTGAAAACAAGGCATTTGCTCAAATGTTTCACAAGCATTATGCGGGGAAGATTTTGGACTGCCACTTAAATCTGTTGAATGTCATTCGAGCAGGTGGTTACTTACCTGACAGAGTTATCAACCTACTTCTTCAATATCTAACCAACAGTATTTCAAAGAATAGCATGTATACTGTGCTGCAGCCTCGGCTTGACGTTCTTCTTTTTGAAATAGTTTTCCCTCTCATGTGCTTCAATGATAATGATCAAAAGCTTTGGGACGAAGATCCACATGAGTATGTTAGGAAAGGCTATGACATTATTGAAGACTTGTATAGTCCTAGGACTGCCTCCGTGGATTTTATGAGTGAGTTGGTTCGAAAGCGCAGGGAAGATAATTTTCACAAGTTTATTCAATTCATTGTTGAAATTTTGAAAAGGTATGATGAAGCACCAGTAGAATACAGGTCTTATAGGCAGAAAGATGGAGCTCTTCTTGCTATTGGGACACTTTGTGACAAATTGAAACAAACTGAGCCCTATAAATCTGAACTTGAGCGTATGTTAGTGCAACACGTCTTTCCCGAGTTTGGCAGTCCTGTTGGCCATCTTAGGGCCAAGGCAGCGTGGGTTGCAGGACAATATGCCCACATTAGCTTCTCAGATCAGAACAATTTCCGGAAGGCATTGCAATGTGTTGTCTGTGGAATGCGAGATCCTGAACTACCTGTCCGCATTGATTCTGTTTTTGCTTTGCGTTCTTTTATTGAAGCTTGCAAAGGTGATTTAGATGAAATTCGTTCTCTTCTCCCTTCGCTCCTTGATGAGTTCTTCAAACTTATGAATGAGGTTGAGAATGAAGACCTTGTGTTTACTTTGGAGACTATTGTGGACAAGTTTGGTGAAGAAATGGCACCTTATGCACTTGGGCTATGCCAAAATTTGGCTGCTGCATTTTGGAGGTGTATGAACACTGCTGATGCTGATGATGACGCTGATGATTCAAGTTCAATGGCTGCAGTTGGTTGCTTGCGTGCTATTAGCACAATACTTGAATCAGTGAGCAGTCTTCCTCAACTTTTTGTTCAAATCGAGCCTACCTTGCTTCCCATAATGCGTAGCATGTTAACAACCGATGGTCAAGAGGTTTTTGAAGAAATTTTGGAGATCGTATCATATATGACTTTTTTCTCTCCAACAATATCACTGGACATGTGGAACCTTTGGCCATTGATGATGGAAGCACTATCAGATTGGGCTATTGATTTCTTTTCAAATATTATGGTTCCTTTGGACAATTATATTTCAAGGGGAACTTCCCATTTCATTACATGCAAAGAACCTGACTATCAACAGTGTTTGTGGAATATGATTTCCTCTATTATGTCAGATAAAAATATGGAGGACAGTGATATTGAGTCAGCTCCAAAGCTGATTGAAATTGTCTTCCTAAACTGCAGAGGACTGGTGGACCACTGGGTTGAGCCGTATCTCAGAATTACAATTGAACGTTTGCATAGAACTGGAAAATCATATTTGAAATGTCTTCTCATTCAAGTGATTTCAGATGGTCTGTACTACAACGCCACATTGACTCTTAGCATATTGCAAAAGTTAGGTGTTGCATCAGAAATCTTCAATCTTTGGTTCCAAATGCTGCAAGAAGTCAAGAAGAGTGGTGTGCGTGCTAATTTTAAAAGGGAACATGGCAAGAAAGTTTGCTGCCTTGGTTTAACATCCTTGCTGGCACTTCCAGCTGATCAATTGCCAGGAGAGGCTTTAGGCCGGGTATTCCGTGCCACTCTTGATCTCCTGGTTGCATACAAGGATCAAGTTGCAGAAGCTGCAGAAGAGGAGGAAGAAGAAGAAGAAAATGACGACGATGATATGGACGGCTTTCAAACTGATGATGAAGATGAGGATGACAGTGGTTCTGACAGGGAAATGGGAACTGATGCTGAAGATGGGGATGAAGCTGACAGTAGTAAACTTAGAAAATTGACTGATCAGGAAACGTCATTCAGGCCCGATGATGAGGACTCAGATGACGACTTCAGTGATGACGAAGAGTTACAGTCCCCAATTGATGAAGTGGATCCTTTTATTTTTTTTGTGGATACAATGAAAGTGATGCAATCATCAGATCCAATGAGGTTTCAAAACCTGACCCAAACACTTGAGTTCTCTTATCAAGCTCTTGCAAATGGTGTTGCCCAGCATGCTGAGACGAGAAGAGGTGAGATTGAGAAGGAAAAGTCGGAGAAGTCAGCAGCTACCACAGATTCTTAA
Protein sequence

>Msa0440430

MDEVVVILEGTLSPNPNERKAAEQRLDEIQYAPNHLPTLLQIIVQSDDSVSDISLRQVAAIHFKNFIAKNWSSTAHSISFADKDFVRNHILLFLPQLPSLLRVQLGECLKTILHSDYPDHCPHLLDWIKHNLHDQQHLYSALFVLRILSIKYEFKSDEDRTPAYHIIHETFPHLLNIFNTLLQIPDPSIQVADLIKLICKIFWSSIYLEIPKLLFDQNVFSAWMVLFLNVLERPVPLEGQPVDPDLRKSWGWWKLKKWTIHILNRLYTRFGDLKLRNPENKAFAQMFHKHYAGKILDCHLNLLNVIRAGGYLPDRVINLLLQYLTNSISKNSMYTVLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASVDFMSELVRKRREDNFHKFIQFIVEILKRYDEAPVEYRSYRQKDGALLAIGTLCDKLKQTEPYKSELERMLVQHVFPEFGSPVGHLRAKAAWVAGQYAHISFSDQNNFRKALQCVVCGMRDPELPVRIDSVFALRSFIEACKGDLDEIRSLLPSLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTADADDDADDSSSMAAVGCLRAISTILESVSSLPQLFVQIEPTLLPIMRSMLTTDGQEVFEEILEIVSYMTFFSPTISLDMWNLWPLMMEALSDWAIDFFSNIMVPLDNYISRGTSHFITCKEPDYQQCLWNMISSIMSDKNMEDSDIESAPKLIEIVFLNCRGLVDHWVEPYLRITIERLHRTGKSYLKCLLIQVISDGLYYNATLTLSILQKLGVASEIFNLWFQMLQEVKKSGVRANFKREHGKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLVAYKDQVAEAAEEEEEEEENDDDDMDGFQTDDEDEDDSGSDREMGTDAEDGDEADSSKLRKLTDQETSFRPDDEDSDDDFSDDEELQSPIDEVDPFIFFVDTMKVMQSSDPMRFQNLTQTLEFSYQALANGVAQHAETRRGEIEKEKSEKSAATTDS*