AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1368400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368400 MtrunA17_Chr3g0144891 97.459 551 12 1 1 549 19 569 0.0 1115
Msa1368400 MtrunA17_Chr4g0035361 72.117 477 120 8 79 549 1 470 0.0 657
Msa1368400 MtrunA17_Chr8g0372651 58.185 562 196 10 7 549 13 554 0.0 606
Msa1368400 MtrunA17_Chr4g0035391 53.082 584 202 12 23 549 48 616 0.0 562
Msa1368400 MtrunA17_Chr1g0155521 51.433 593 231 12 1 544 30 614 0.0 558
Msa1368400 MtrunA17_Chr3g0144911 63.145 407 140 5 1 398 29 434 0.0 528
Msa1368400 MtrunA17_Chr5g0404711 73.112 331 88 1 13 342 10 340 0.0 525
Msa1368400 MtrunA17_Chr5g0404711 50.000 88 41 2 463 547 388 475 5.71e-17 83.6
Msa1368400 MtrunA17_Chr3g0141821 48.973 584 238 11 2 549 13 572 2.24e-175 507
Msa1368400 MtrunA17_Chr7g0236461 40.351 570 267 9 20 544 39 580 2.52e-141 421
Msa1368400 MtrunA17_Chr3g0080051 39.967 598 306 14 1 545 20 617 2.73e-130 393
Msa1368400 MtrunA17_Chr4g0035381 59.044 293 111 2 51 336 49 339 8.10e-126 374
Msa1368400 MtrunA17_Chr8g0369291 37.979 574 304 12 19 545 33 601 6.94e-117 358
Msa1368400 MtrunA17_Chr5g0399151 51.815 303 144 1 16 318 54 354 1.82e-110 337
Msa1368400 MtrunA17_Chr3g0131581 31.349 252 152 9 44 294 36 267 6.97e-21 92.8
Msa1368400 MtrunA17_Chr3g0144901 34.653 202 100 8 371 549 4 196 2.37e-20 89.4
Msa1368400 MtrunA17_Chr4g0076441 30.622 209 137 3 80 286 34 236 3.06e-20 92.0
Msa1368400 MtrunA17_Chr2g0290661 30.516 213 132 4 80 286 39 241 5.27e-20 91.3
Msa1368400 MtrunA17_Chr3g0102691 30.144 209 139 3 79 286 33 235 2.53e-19 89.7
Msa1368400 MtrunA17_Chr8g0385691 33.790 219 126 5 72 289 42 242 3.32e-19 87.4
Msa1368400 MtrunA17_Chr8g0385681 32.420 219 129 7 72 289 45 245 4.29e-18 84.3
Msa1368400 MtrunA17_Chr4g0004981 29.204 226 137 8 79 295 125 336 3.66e-17 84.3
Msa1368400 MtrunA17_Chr8g0385291 27.064 218 140 6 79 289 181 386 1.33e-14 76.6
Msa1368400 MtrunA17_Chr1g0161441 29.224 219 135 9 74 289 27 228 4.67e-13 69.3
Msa1368400 MtrunA17_Chr3g0131071 29.333 225 128 11 79 289 249 456 1.59e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368400 AT2G21540.6 64.394 528 168 5 4 529 20 529 0.0 694
Msa1368400 AT2G21540.2 64.394 528 168 5 4 529 20 529 0.0 694
Msa1368400 AT2G21540.1 64.394 528 168 5 4 529 20 529 0.0 694
Msa1368400 AT2G21540.4 64.394 528 168 5 4 529 20 529 0.0 694
Msa1368400 AT2G21540.3 63.826 528 165 4 4 529 20 523 0.0 691
Msa1368400 AT2G21540.5 63.826 528 165 4 4 529 20 523 0.0 691
Msa1368400 AT4G36490.1 61.939 557 177 13 7 549 8 543 0.0 650
Msa1368400 AT4G39180.3 58.932 543 199 8 1 537 17 541 0.0 647
Msa1368400 AT4G39180.2 58.932 543 199 8 1 537 17 541 0.0 647
Msa1368400 AT4G39180.1 58.748 543 201 8 1 537 17 542 0.0 645
Msa1368400 AT4G34580.2 60.727 550 188 12 1 537 8 542 0.0 644
Msa1368400 AT4G34580.1 60.727 550 188 12 1 537 8 542 0.0 644
Msa1368400 AT2G18180.1 60.144 557 183 13 8 548 13 546 0.0 632
Msa1368400 AT2G18180.2 59.964 557 184 13 8 549 13 545 0.0 632
Msa1368400 AT4G39170.1 53.872 594 219 12 1 547 29 614 0.0 593
Msa1368400 AT4G39170.2 53.547 592 222 12 1 547 29 612 0.0 588
Msa1368400 AT2G16380.2 54.336 565 215 12 1 547 8 547 0.0 580
Msa1368400 AT2G16380.1 54.336 565 215 12 1 547 8 547 0.0 580
Msa1368400 AT2G21520.1 51.689 592 237 13 1 544 29 619 0.0 578
Msa1368400 AT2G21520.2 51.689 592 237 13 1 544 33 623 0.0 578
Msa1368400 AT2G21520.3 51.689 592 237 13 1 544 33 623 0.0 578
Msa1368400 AT2G18180.4 59.917 484 160 10 80 549 11 474 0.0 563
Msa1368400 AT2G18180.3 60.124 484 159 10 80 548 11 475 0.0 563
Msa1368400 AT2G18180.5 59.743 467 154 10 97 549 1 447 0.0 538
Msa1368400 AT1G19650.1 48.223 591 256 12 1 549 26 608 5.26e-175 508
Msa1368400 AT2G16380.3 54.176 467 173 9 97 547 1 442 1.68e-165 477
Msa1368400 AT1G75370.1 49.915 587 238 14 1 543 29 603 3.09e-165 483
Msa1368400 AT1G75370.2 49.915 587 238 14 1 543 29 603 1.38e-164 483
Msa1368400 AT1G19650.3 68.438 320 99 2 1 319 26 344 2.24e-159 462
Msa1368400 AT3G24840.1 45.931 553 253 11 1 532 22 549 8.90e-158 462
Msa1368400 AT3G24840.6 45.931 553 253 11 1 532 22 549 8.90e-158 462
Msa1368400 AT3G24840.4 45.931 553 253 11 1 532 22 549 8.90e-158 462
Msa1368400 AT3G24840.2 45.931 553 253 11 1 532 22 549 8.90e-158 462
Msa1368400 AT3G24840.7 45.848 554 253 11 1 532 22 550 1.67e-157 462
Msa1368400 AT3G24840.3 45.848 554 253 11 1 532 22 550 1.67e-157 462
Msa1368400 AT3G24840.5 45.848 554 253 11 1 532 22 550 1.67e-157 462
Msa1368400 AT1G19650.2 47.750 511 219 10 80 549 33 536 1.25e-152 448
Msa1368400 AT5G56160.1 38.908 568 303 16 5 543 19 571 7.82e-128 386
Msa1368400 AT5G56160.3 38.908 568 303 16 5 543 19 571 7.82e-128 386
Msa1368400 AT1G55690.2 37.807 611 304 12 1 546 20 619 1.09e-124 379
Msa1368400 AT1G55690.4 37.807 611 304 12 1 546 20 619 1.09e-124 379
Msa1368400 AT1G55690.1 37.807 611 304 12 1 546 20 619 1.09e-124 379
Msa1368400 AT1G55690.5 37.807 611 304 12 1 546 20 619 1.09e-124 379
Msa1368400 AT1G55690.3 37.767 609 303 12 1 544 20 617 4.22e-124 378
Msa1368400 AT5G56160.2 51.818 330 153 3 5 328 19 348 4.67e-121 365
Msa1368400 AT5G47510.2 51.685 267 127 1 46 312 20 284 2.15e-103 315
Msa1368400 AT5G47510.4 51.685 267 127 1 46 312 20 284 5.04e-103 315
Msa1368400 AT5G47510.1 51.685 267 127 1 46 312 19 283 6.53e-103 315
Msa1368400 AT5G47510.3 53.097 226 106 0 87 312 2 227 5.80e-93 287
Msa1368400 AT5G47730.4 28.631 241 157 5 55 286 7 241 3.44e-21 95.5
Msa1368400 AT5G47730.1 28.631 241 157 5 55 286 7 241 3.44e-21 95.5
Msa1368400 AT1G55840.2 28.708 209 141 3 80 286 12 214 4.22e-18 85.5
Msa1368400 AT1G55840.1 28.708 209 141 3 80 286 39 241 6.78e-18 85.5
Msa1368400 AT5G47730.2 29.167 192 128 3 97 286 1 186 1.34e-16 80.9
Msa1368400 AT5G47730.3 29.167 192 128 3 97 286 1 186 1.34e-16 80.9
Msa1368400 AT1G72160.1 27.193 228 139 7 79 293 166 379 5.74e-16 81.3
Msa1368400 AT1G01630.1 30.137 219 134 5 72 289 45 245 6.59e-16 78.2
Msa1368400 AT1G75170.2 30.841 214 120 9 82 289 49 240 3.01e-13 71.2
Msa1368400 AT1G75170.1 30.841 214 120 9 82 289 49 240 3.01e-13 71.2
Msa1368400 AT3G51670.1 26.695 236 145 9 79 306 84 299 3.48e-12 68.9
Msa1368400 AT4G09160.3 24.779 226 147 8 79 293 316 529 1.81e-11 67.4
Msa1368400 AT4G09160.2 24.779 226 147 8 79 293 316 529 1.98e-11 67.0
Msa1368400 AT4G09160.1 24.779 226 147 8 79 293 341 554 2.23e-11 67.0
Msa1368400 AT4G36640.1 28.311 219 131 9 80 293 44 241 6.31e-11 63.9
Msa1368400 AT4G36640.3 28.311 219 131 9 80 293 44 241 6.31e-11 63.9

Find 114 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACCAAAGCACAACTATTT+TGG 0.160946 tig0018646:-72671 Msa1368400:CDS
TCAACGCTGGTTCTGGATTT+AGG 0.188515 tig0018646:-71871 Msa1368400:CDS
ACAATTTGTTGGTGGAATTA+TGG 0.206593 tig0018646:-70469 Msa1368400:CDS
AAAACTTACACCATATGATT+TGG 0.241645 tig0018646:+71146 None:intergenic
ATCACAGAAGCAGCACTTTA+TGG 0.247624 tig0018646:-70390 Msa1368400:CDS
CTTAAGTGGAGGAAGGAATT+TGG 0.250834 tig0018646:-73091 Msa1368400:CDS
TTCATCATCAACGCTGGTTC+TGG 0.279341 tig0018646:-71878 Msa1368400:CDS
CTTGACCGACCTGTCAAAAT+TGG 0.280566 tig0018646:-74635 Msa1368400:intron
GACACTTGATGTTCATTGTT+TGG 0.296140 tig0018646:-71175 Msa1368400:CDS
TTGAGGTGGTCTTGGGATCT+AGG 0.297103 tig0018646:+71822 None:intergenic
TACTCATTGTTTGAAATTGC+AGG 0.299234 tig0018646:+70327 None:intergenic
TGGAATTATGGCACTTGTTA+TGG 0.309546 tig0018646:-70457 Msa1368400:CDS
CAGTGAACTTCCAGAGTTCT+TGG 0.325219 tig0018646:-71494 Msa1368400:CDS
ACCTGTTTACATTGAAAGAT+TGG 0.335171 tig0018646:-72824 Msa1368400:CDS
GCTACTTGTCATGCGAATTA+TGG 0.337136 tig0018646:+70425 None:intergenic
GATTGTTACTCCAACAATAA+TGG 0.338457 tig0018646:-70516 Msa1368400:CDS
AAACTTACACCATATGATTT+GGG 0.345334 tig0018646:+71147 None:intergenic
AACAATAATGGAATGAATTC+TGG 0.350361 tig0018646:-70504 Msa1368400:CDS
CAAGTTCTACTTGTCGAGTA+AGG 0.352182 tig0018646:+69749 None:intergenic
AATTTCAAACAATGAGTATA+TGG 0.354504 tig0018646:-70322 Msa1368400:CDS
TACACAATAAAAGCTTTATC+CGG 0.372847 tig0018646:-71267 Msa1368400:CDS
CCCAATCTTTCAATGTAAAC+AGG 0.377140 tig0018646:+72823 None:intergenic
CAATGAACATCAAGTGTCTC+TGG 0.400837 tig0018646:+71180 None:intergenic
TGATGATGAACATACGGTTC+AGG 0.404329 tig0018646:+71891 None:intergenic
AGAATTCATTCCATTATTGT+TGG 0.414930 tig0018646:+70506 None:intergenic
ATGAATTAGATGGCTCAAAA+TGG 0.425006 tig0018646:-71300 Msa1368400:intron
GGAATTATGGCACTTGTTAT+GGG 0.425311 tig0018646:-70456 Msa1368400:CDS
AGAGTTGGGTGCAACCAAAA+AGG 0.425560 tig0018646:-70175 Msa1368400:intron
ACTTGTACTTGTGCTGATAA+AGG 0.426503 tig0018646:-71466 Msa1368400:CDS
CCTGTTTACATTGAAAGATT+GGG 0.431538 tig0018646:-72823 Msa1368400:CDS
CTATTTGGACTTTAGGCACT+AGG 0.437854 tig0018646:-69778 Msa1368400:intron
AAAACTACCTTCAAGATCTC+TGG 0.441339 tig0018646:+71406 None:intergenic
CATCCAAAATAGTTGTGCTT+TGG 0.441578 tig0018646:+72668 None:intergenic
GTTCTGGATTTAGGCTATTG+TGG 0.444798 tig0018646:-71862 Msa1368400:CDS
TTGGATCAACCCAAATCATA+TGG 0.447510 tig0018646:-71156 Msa1368400:CDS
CAGAGGCTTCAGAAGATTGA+TGG 0.450399 tig0018646:-72300 Msa1368400:CDS
ACAAAGCAGTTGATTCTTCG+TGG 0.451912 tig0018646:-70906 Msa1368400:CDS
CATCAATCTTCTGAAGCCTC+TGG 0.457843 tig0018646:+72301 None:intergenic
CAGTACTCTTGAACAAGAGT+TGG 0.466343 tig0018646:-70190 Msa1368400:CDS
TGATTCATTGACCAGGTCCT+AGG 0.474555 tig0018646:-71712 Msa1368400:intron
TACTATCCACAAGGACATCA+TGG 0.474884 tig0018646:-72865 Msa1368400:CDS
AAAAGCTTTATCCGGGGTTG+AGG 0.482536 tig0018646:-71259 Msa1368400:CDS
TGCTTGAAGTCATTGATGCC+AGG 0.484512 tig0018646:-71669 Msa1368400:intron
ACACAATAAAAGCTTTATCC+GGG 0.487534 tig0018646:-71266 Msa1368400:CDS
TCAACTGCTTTGTCAAGTAC+TGG 0.487930 tig0018646:+70916 None:intergenic
TTTGCTGCAATTGAACATGC+AGG 0.488698 tig0018646:+72703 None:intergenic
AGGACATCATGGAGTTGATA+AGG 0.489174 tig0018646:-72854 Msa1368400:CDS
AGTGAACTTCCAGAGTTCTT+GGG 0.490368 tig0018646:-71493 Msa1368400:CDS
TGACTTCAAGCAACTTGCTC+TGG 0.490990 tig0018646:+71680 None:intergenic
TGCTATCTGACAAGGGTCCA+TGG 0.491415 tig0018646:-71435 Msa1368400:CDS
ACTCGACAAGTAGAACTTGA+AGG 0.493504 tig0018646:-69745 Msa1368400:CDS
ATGAGGATCATCATGCTTTG+AGG 0.497087 tig0018646:+73996 None:intergenic
GGATTTAGCAAACAATTTGT+TGG 0.503430 tig0018646:-70480 Msa1368400:CDS
GCTTACAGTTCCGCTTCCAC+TGG 0.506676 tig0018646:-69595 Msa1368400:intron
TGCTCTGGTATTTGTTACCT+AGG 0.510194 tig0018646:+71695 None:intergenic
AATTGCAGGTGCTTTCATCA+TGG 0.511679 tig0018646:+70341 None:intergenic
ATTTGGTGCTGACACTATCA+TGG 0.514322 tig0018646:-73074 Msa1368400:CDS
GATGATGAACATACGGTTCA+GGG 0.518627 tig0018646:+71892 None:intergenic
TTTAGCAAACAATTTGTTGG+TGG 0.520699 tig0018646:-70477 Msa1368400:CDS
ACAGGTCGGTCAAGAGGTGC+GGG 0.532165 tig0018646:+74644 None:intergenic
CAAGTACCACCCAAGAACTC+TGG 0.533812 tig0018646:+71484 None:intergenic
TGCTTAATAATGCTCTAACC+AGG 0.535342 tig0018646:-70215 Msa1368400:CDS
CCCTCTCAAACTCTCGTACA+TGG 0.536103 tig0018646:+72743 None:intergenic
TGAGGATCATCATGCTTTGA+GGG 0.539591 tig0018646:+73997 None:intergenic
TGTGGACAGATATGCTTAAG+TGG 0.542108 tig0018646:-73105 Msa1368400:CDS
AAGATCTCTGGATCATTCCA+TGG 0.542169 tig0018646:+71418 None:intergenic
TTCAGCCATGCGCTTCATCA+TGG 0.544493 tig0018646:+70299 None:intergenic
TGTTACCTTAGCATCATATG+AGG 0.545245 tig0018646:+73979 None:intergenic
AAGTTCTACTTGTCGAGTAA+GGG 0.546049 tig0018646:+69750 None:intergenic
GACAAATACGTGCTTTCGAA+AGG 0.549204 tig0018646:-70865 Msa1368400:intron
TATCACTTCACCAGTGGAAG+CGG 0.549222 tig0018646:+69585 None:intergenic
AGTACTCTTGAACAAGAGTT+GGG 0.549587 tig0018646:-70189 Msa1368400:CDS
GACAGGTCGGTCAAGAGGTG+CGG 0.549720 tig0018646:+74643 None:intergenic
AAGGGTTGGGTCTATAAAGA+AGG 0.550214 tig0018646:-74178 Msa1368400:CDS
TTTGTCAAGTACTGGAACAA+AGG 0.552073 tig0018646:+70924 None:intergenic
ATGATCCTCATATGATGCTA+AGG 0.554588 tig0018646:-73984 Msa1368400:intron
AGAAGAAACTGCATATCAGA+AGG 0.555317 tig0018646:-71220 Msa1368400:CDS
AGTTATGTCTATCTGTATTG+AGG 0.566228 tig0018646:-74091 Msa1368400:CDS
CATCATGGAGTTGATAAGGA+TGG 0.566925 tig0018646:-72850 Msa1368400:CDS
AAGTATGAACAAAGCTGCAA+GGG 0.567227 tig0018646:-72331 Msa1368400:CDS
CAGCGTTGATGATGAACATA+CGG 0.574837 tig0018646:+71885 None:intergenic
GAATGATCCAGAGATCTTGA+AGG 0.575374 tig0018646:-71413 Msa1368400:intron
TAGATGGCTCAAAATGGTGT+TGG 0.576252 tig0018646:-71294 Msa1368400:CDS
GAAGTATGAACAAAGCTGCA+AGG 0.578601 tig0018646:-72332 Msa1368400:CDS
TCATGAGATGGAACATTCTG+AGG 0.585895 tig0018646:-74214 Msa1368400:exon
GGCAACTCAGTGTATTATGA+TGG 0.587600 tig0018646:-70366 Msa1368400:CDS
TGTAAACAAAGGTCATGAGA+TGG 0.590589 tig0018646:-74226 Msa1368400:intron
TCAACTCCATGATGTCCTTG+TGG 0.593727 tig0018646:+72859 None:intergenic
GCTTAATAATGCTCTAACCA+GGG 0.597448 tig0018646:-70214 Msa1368400:CDS
CACAATAAAAGCTTTATCCG+GGG 0.604738 tig0018646:-71265 Msa1368400:CDS
CGTAATTATCACTTCACCAG+TGG 0.606803 tig0018646:+69579 None:intergenic
AATAATGGAATGAATTCTGG+TGG 0.608682 tig0018646:-70501 Msa1368400:CDS
CAATCTTCTGAAGCCTCTGG+AGG 0.609585 tig0018646:+72304 None:intergenic
ACCATGTACGAGAGTTTGAG+AGG 0.609926 tig0018646:-72744 Msa1368400:CDS
TAGAGAAAACAAAACAAATG+TGG 0.610144 tig0018646:-73123 Msa1368400:CDS
AGATATGCTTAAGTGGAGGA+AGG 0.618590 tig0018646:-73098 Msa1368400:CDS
GAAGAAACTGCATATCAGAA+GGG 0.622435 tig0018646:-71219 Msa1368400:CDS
TGGATGCATGCTATCTGACA+AGG 0.622907 tig0018646:-71443 Msa1368400:CDS
CTGCAAGGGATCTCCTCCAG+AGG 0.649316 tig0018646:-72317 Msa1368400:CDS
TGTACTTGTGCTGATAAAGG+TGG 0.649664 tig0018646:-71463 Msa1368400:CDS
CGTATGTTCATCATCAACGC+TGG 0.650754 tig0018646:-71884 Msa1368400:CDS
GCATGACAAGTAGCATGCCA+AGG 0.652880 tig0018646:-70416 Msa1368400:CDS
GAACTTCCAGAGTTCTTGGG+TGG 0.657539 tig0018646:-71490 Msa1368400:CDS
GGTTGGGTCTATAAAGAAGG+TGG 0.673399 tig0018646:-74175 Msa1368400:CDS
CCATGTACGAGAGTTTGAGA+GGG 0.676404 tig0018646:-72743 Msa1368400:CDS
GTTGTTGCAAGTAACATCAG+TGG 0.679229 tig0018646:-72782 Msa1368400:CDS
ACAGAAGCAGCACTTTATGG+TGG 0.688016 tig0018646:-70387 Msa1368400:CDS
TTGTTCAAGAGTACTGACCC+TGG 0.690391 tig0018646:+70197 None:intergenic
GGACAGATATGCTTAAGTGG+AGG 0.704066 tig0018646:-73102 Msa1368400:CDS
GTTCTAAAATACTATCCACA+AGG 0.704171 tig0018646:-72874 Msa1368400:CDS
GGATGCATGCTATCTGACAA+GGG 0.704740 tig0018646:-71442 Msa1368400:CDS
TGATGGTGACAACTATCCTG+AGG 0.705159 tig0018646:-72283 Msa1368400:intron
TATGGCCATGATGAAGCGCA+TGG 0.713241 tig0018646:-70304 Msa1368400:CDS
TGGTGCTGACACTATCATGG+AGG 0.730519 tig0018646:-73071 Msa1368400:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTATTTTATTTTTT+TGG + tig0018646:69958-69977 None:intergenic 0.0%
!!! ATTTTTTATTTATTTTTTTT+AGG - tig0018646:71223-71242 Msa1368400:CDS 0.0%
!!! TTTTTTATTTATTTTTTTTA+GGG - tig0018646:71224-71243 Msa1368400:CDS 0.0%
!!! TTTTTATTTATTTTTAATAA+TGG + tig0018646:73688-73707 None:intergenic 0.0%
!!! ATGATTTATTTATTTTTCAT+TGG + tig0018646:71199-71218 None:intergenic 10.0%
!! TTTATTACAAGTTATTATTA+CGG - tig0018646:71803-71822 Msa1368400:intron 10.0%
!!! TTCTATGTTATTTATTGATA+AGG - tig0018646:69920-69939 Msa1368400:intron 15.0%
!! TTATTTATTGATAAGGTAAA+AGG - tig0018646:69927-69946 Msa1368400:intron 15.0%
!!! TTTTTTTATCAATTGATGTT+TGG + tig0018646:70748-70767 None:intergenic 15.0%
!!! TGATTTTGTAAAATAGATTT+TGG + tig0018646:70900-70919 None:intergenic 15.0%
!!! AAATAGTTTTTTCTTCTAAT+TGG + tig0018646:71663-71682 None:intergenic 15.0%
!!! AAAAACCAATGAATTTTATA+AGG + tig0018646:72663-72682 None:intergenic 15.0%
!! TTAAAAATATTATGTCACAA+AGG + tig0018646:72878-72897 None:intergenic 15.0%
!!! AAATTTAAGATAAACAAACA+AGG + tig0018646:73131-73150 None:intergenic 15.0%
!! TTTCATTAACTAATGAAATT+TGG + tig0018646:73220-73239 None:intergenic 15.0%
!!! AACACATAACATTTTAAAAA+AGG + tig0018646:73274-73293 None:intergenic 15.0%
!! AGCTTATAAGTATATAAAAA+TGG + tig0018646:73506-73525 None:intergenic 15.0%
!!! ATTGCTTCTTTATTTTATTT+TGG - tig0018646:74093-74112 Msa1368400:CDS 15.0%
!!! TTGCTTCTTTATTTTATTTT+GGG - tig0018646:74094-74113 Msa1368400:CDS 15.0%
!! TGAAATGTTAATGTTATGAT+TGG - tig0018646:69763-69782 Msa1368400:CDS 20.0%
!!! TTTCTTTTTCTTGTAAACAA+AGG - tig0018646:70001-70020 Msa1368400:intron 20.0%
!! AAAAATTCATTCACCAAAAA+GGG - tig0018646:70109-70128 Msa1368400:intron 20.0%
!! CAAACTTGAATCAATTATAA+AGG + tig0018646:70363-70382 None:intergenic 20.0%
!! GAATCAATTCTCAAATTTAT+TGG - tig0018646:70434-70453 Msa1368400:CDS 20.0%
!!! GATATAATTGATTTTGAAAC+TGG + tig0018646:70659-70678 None:intergenic 20.0%
!!! AAATCGATTCTCAAATTTAT+TGG - tig0018646:70712-70731 Msa1368400:intron 20.0%
!!! TTTTGGTTTAAATCAAATCA+AGG + tig0018646:70883-70902 None:intergenic 20.0%
!!! ATTTGATTTCAATGGTATAA+TGG - tig0018646:71037-71056 Msa1368400:intron 20.0%
!! TTTATGGTAACTATCATTTA+AGG + tig0018646:71691-71710 None:intergenic 20.0%
!! TTCTAATTGTTATGTTCATA+TGG - tig0018646:71832-71851 Msa1368400:CDS 20.0%
!! TAATTACTAATTAGCATGAT+TGG - tig0018646:71869-71888 Msa1368400:CDS 20.0%
!! ATAGTTAGTTAATGAATATC+AGG - tig0018646:72066-72085 Msa1368400:intron 20.0%
!! TTAACACCTAATAAAAACTA+TGG - tig0018646:72182-72201 Msa1368400:intron 20.0%
!! TTCTTCCTTATAAAATTCAT+TGG - tig0018646:72655-72674 Msa1368400:intron 20.0%
!! TAAAGCAAAGAAAAACAATA+AGG - tig0018646:72898-72917 Msa1368400:CDS 20.0%
!! ATAAGGTAATTATATTTCCT+TGG - tig0018646:72915-72934 Msa1368400:intron 20.0%
!! AATTTCAAACAATGAGTATA+TGG - tig0018646:73916-73935 Msa1368400:intron 20.0%
!!! TAGCTTTTGCAAAATAAAAT+TGG - tig0018646:74277-74296 Msa1368400:intron 20.0%
!!! TTTTGCAAAATAAAATTGGT+TGG - tig0018646:74281-74300 Msa1368400:intron 20.0%
! TGCCTATTATAAAAATGTAC+AGG - tig0018646:69871-69890 Msa1368400:intron 25.0%
! GCCTATTATAAAAATGTACA+GGG - tig0018646:69872-69891 Msa1368400:intron 25.0%
!! TCCCTGTACATTTTTATAAT+AGG + tig0018646:69876-69895 None:intergenic 25.0%
! TTTATTGATAAGGTAAAAGG+TGG - tig0018646:69930-69949 Msa1368400:intron 25.0%
! TGAGGATGAAAAAAAGAAAA+GGG - tig0018646:70042-70061 Msa1368400:intron 25.0%
! ATGAAAAAAAGAAAAGGGTT+GGG - tig0018646:70047-70066 Msa1368400:intron 25.0%
! CAAAAATTCATTCACCAAAA+AGG - tig0018646:70108-70127 Msa1368400:intron 25.0%
! AAAATTCATTCACCAAAAAG+GGG - tig0018646:70110-70129 Msa1368400:intron 25.0%
! TTTATGTCTGAATAGTAGTT+TGG + tig0018646:70490-70509 None:intergenic 25.0%
! AAGCCAAACATAACAATTTA+CGG + tig0018646:70618-70637 None:intergenic 25.0%
!! ATACCTTGATTTGATTTCAA+TGG - tig0018646:71029-71048 Msa1368400:intron 25.0%
! ATACCATTGAAATCAAATCA+AGG + tig0018646:71035-71054 None:intergenic 25.0%
! TAGAGAAAACAAAACAAATG+TGG - tig0018646:71115-71134 Msa1368400:intron 25.0%
!!! GCTTGTTTTGTTTTTCTATA+AGG - tig0018646:71315-71334 Msa1368400:intron 25.0%
! CTTCTAATTGGTTATTCTTT+AGG + tig0018646:71651-71670 None:intergenic 25.0%
! TACCATAAATCTAACCAAAT+TGG - tig0018646:71702-71721 Msa1368400:intron 25.0%
! ATCCAATTTGGTTAGATTTA+TGG + tig0018646:71707-71726 None:intergenic 25.0%
! AATAAACATTATTGCCTTGT+TGG + tig0018646:71789-71808 None:intergenic 25.0%
!! AATTAGCATGATTGGTAATT+AGG - tig0018646:71877-71896 Msa1368400:CDS 25.0%
!! ATTAGCATGATTGGTAATTA+GGG - tig0018646:71878-71897 Msa1368400:CDS 25.0%
! ATTTGAACACATGATAATTG+TGG + tig0018646:72151-72170 None:intergenic 25.0%
!! AGTCAACCATAGTTTTTATT+AGG + tig0018646:72191-72210 None:intergenic 25.0%
! ACTTTCATGAAAACGTAAAT+TGG + tig0018646:72218-72237 None:intergenic 25.0%
! AATCATTTCTCTTCTATCTT+AGG - tig0018646:72261-72280 Msa1368400:intron 25.0%
! TGGAAAGAAAAGTTCAATTA+GGG + tig0018646:72320-72339 None:intergenic 25.0%
! AAACTACTTACACATTTCTA+TGG - tig0018646:72459-72478 Msa1368400:intron 25.0%
!!! TTTAGTTAACTTGTTAAGCA+AGG - tig0018646:72488-72507 Msa1368400:intron 25.0%
!! TACACAATAAAAGCTTTATC+CGG - tig0018646:72971-72990 Msa1368400:intron 25.0%
! AAACTTACACCATATGATTT+GGG + tig0018646:73094-73113 None:intergenic 25.0%
! AAAACTTACACCATATGATT+TGG + tig0018646:73095-73114 None:intergenic 25.0%
!! AATCATATGGTGTAAGTTTT+AGG - tig0018646:73095-73114 Msa1368400:CDS 25.0%
! TTAAGATAAACAAACAAGGA+AGG + tig0018646:73127-73146 None:intergenic 25.0%
! AGATGAATGCTTAAGATATA+TGG - tig0018646:73161-73180 Msa1368400:intron 25.0%
!!! CATTTTAAAAAAGGTAGCAA+TGG + tig0018646:73265-73284 None:intergenic 25.0%
!! TTTAAAATGTTATGTGTTGC+AGG - tig0018646:73276-73295 Msa1368400:intron 25.0%
! ATAAGCATTTATGCTATAAG+TGG + tig0018646:73427-73446 None:intergenic 25.0%
! AATAAGATGAAAACAGCTTA+TGG - tig0018646:73558-73577 Msa1368400:intron 25.0%
! AGAATTCATTCCATTATTGT+TGG + tig0018646:73735-73754 None:intergenic 25.0%
!! AACAATAATGGAATGAATTC+TGG - tig0018646:73734-73753 Msa1368400:intron 25.0%
! CAATTTGAAGACTAAATTGA+TGG + tig0018646:74135-74154 None:intergenic 25.0%
! TCTAGCAACGAAAAATAAAT+TGG + tig0018646:74169-74188 None:intergenic 25.0%
!! TTTTTAGATACTAAGCACAT+AGG - tig0018646:74213-74232 Msa1368400:exon 25.0%
!! TTTTAGATACTAAGCACATA+GGG - tig0018646:74214-74233 Msa1368400:exon 25.0%
! AAAGAAGAAAAAGAAGAAGT+TGG - tig0018646:74525-74544 Msa1368400:intron 25.0%
TAATCATGCACTATTCTGTA+TGG - tig0018646:69716-69735 Msa1368400:CDS 30.0%
! TCTGTTTTGTACTAGCTAAA+AGG - tig0018646:69740-69759 Msa1368400:CDS 30.0%
AATAACATAGAATGCAAGAC+AGG + tig0018646:69912-69931 None:intergenic 30.0%
CTGAGGATGAAAAAAAGAAA+AGG - tig0018646:70041-70060 Msa1368400:intron 30.0%
GATGAAAAAAAGAAAAGGGT+TGG - tig0018646:70046-70065 Msa1368400:intron 30.0%
AGTTATGTCTATCTGTATTG+AGG - tig0018646:70147-70166 Msa1368400:intron 30.0%
!! CATGTTTGTACCTTTAGAAT+TGG - tig0018646:70296-70315 Msa1368400:CDS 30.0%
TCATACTTGACCAATTCTAA+AGG + tig0018646:70309-70328 None:intergenic 30.0%
AAACATATTTCCAACCAATG+TGG - tig0018646:70406-70425 Msa1368400:CDS 30.0%
TGTCCGTAAATTGTTATGTT+TGG - tig0018646:70612-70631 Msa1368400:intron 30.0%
! CTATAAGGATTTTGAATTCG+AGG - tig0018646:71330-71349 Msa1368400:intron 30.0%
!! GTTCTAAAATACTATCCACA+AGG - tig0018646:71364-71383 Msa1368400:intron 30.0%
ACCTGTTTACATTGAAAGAT+TGG - tig0018646:71414-71433 Msa1368400:CDS 30.0%
CCTGTTTACATTGAAAGATT+GGG - tig0018646:71415-71434 Msa1368400:CDS 30.0%
ATCATACTATCATACTGCAA+TGG + tig0018646:71736-71755 None:intergenic 30.0%
TGGATAAATCAATATACCTC+AGG + tig0018646:71974-71993 None:intergenic 30.0%
TGTTCTTATAACACAACTGA+TGG + tig0018646:71994-72013 None:intergenic 30.0%
! TTTTGTGACAACAATCTAAG+TGG - tig0018646:72029-72048 Msa1368400:intron 30.0%
CAAATCTCATCAACCATTAA+TGG - tig0018646:72092-72111 Msa1368400:intron 30.0%
ATTAGGTGTTAAACTACATG+TGG + tig0018646:72174-72193 None:intergenic 30.0%
CATGAAAGTTGTCAAAAACA+TGG - tig0018646:72229-72248 Msa1368400:intron 30.0%
AAGTTCAATTAGGGTGAATT+TGG + tig0018646:72311-72330 None:intergenic 30.0%
GTGGAAAGAAAAGTTCAATT+AGG + tig0018646:72321-72340 None:intergenic 30.0%
! AATGCTTACATGGATTTTTG+AGG + tig0018646:72436-72455 None:intergenic 30.0%
GTAGTTTGAAAATGCTTACA+TGG + tig0018646:72446-72465 None:intergenic 30.0%
ACATTAATGATTCATTGACC+AGG - tig0018646:72519-72538 Msa1368400:intron 30.0%
! GAAAGGAGATAAATTTTACC+TGG + tig0018646:72590-72609 None:intergenic 30.0%
! ACGCTAATTTTCAATGAGAA+AGG + tig0018646:72607-72626 None:intergenic 30.0%
ATTTCCTTGGATGAATTAGA+TGG - tig0018646:72928-72947 Msa1368400:intron 30.0%
ATGAATTAGATGGCTCAAAA+TGG - tig0018646:72938-72957 Msa1368400:intron 30.0%
! ACACAATAAAAGCTTTATCC+GGG - tig0018646:72972-72991 Msa1368400:intron 30.0%
CTTAAGATATATGGCACAAT+TGG - tig0018646:73170-73189 Msa1368400:intron 30.0%
TCTAATTCTGCTTGAAAAGA+AGG + tig0018646:73197-73216 None:intergenic 30.0%
! ACTTAAACGCAAACACTTTT+AGG + tig0018646:73450-73469 None:intergenic 30.0%
GTAGAAATGAAAGAACGAAA+TGG + tig0018646:73666-73685 None:intergenic 30.0%
GATTGTTACTCCAACAATAA+TGG - tig0018646:73722-73741 Msa1368400:intron 30.0%
! AATAATGGAATGAATTCTGG+TGG - tig0018646:73737-73756 Msa1368400:intron 30.0%
GGATTTAGCAAACAATTTGT+TGG - tig0018646:73758-73777 Msa1368400:intron 30.0%
!! TTTAGCAAACAATTTGTTGG+TGG - tig0018646:73761-73780 Msa1368400:intron 30.0%
!! ACAATTTGTTGGTGGAATTA+TGG - tig0018646:73769-73788 Msa1368400:intron 30.0%
! TACTCATTGTTTGAAATTGC+AGG + tig0018646:73914-73933 None:intergenic 30.0%
! TTAAGCATTTCCTCTTTTTC+AGG + tig0018646:74010-74029 None:intergenic 30.0%
AATGAATTTGACTCCCTATT+TGG - tig0018646:74445-74464 Msa1368400:intron 30.0%
AAATGCATACTATACTCTGC+AGG - tig0018646:69669-69688 Msa1368400:intron 35.0%
TGTAAACAAAGGTCATGAGA+TGG - tig0018646:70012-70031 Msa1368400:intron 35.0%
!! TGAATTTTTGAACTTGCTCG+AGG + tig0018646:70098-70117 None:intergenic 35.0%
ATGATCCTCATATGATGCTA+AGG - tig0018646:70254-70273 Msa1368400:CDS 35.0%
TGTTACCTTAGCATCATATG+AGG + tig0018646:70262-70281 None:intergenic 35.0%
GCTAAGGTAACATTTGTGTT+TGG - tig0018646:70270-70289 Msa1368400:CDS 35.0%
! AATTGATTCCATCACCACAT+TGG + tig0018646:70423-70442 None:intergenic 35.0%
TAACTCAAACGCGATTCTAA+AGG + tig0018646:70579-70598 None:intergenic 35.0%
TCATCACATAATCGAACAAG+AGG - tig0018646:70948-70967 Msa1368400:intron 35.0%
ACATAATCGAACAAGAGGAT+AGG - tig0018646:70953-70972 Msa1368400:intron 35.0%
CATAATCGAACAAGAGGATA+GGG - tig0018646:70954-70973 Msa1368400:intron 35.0%
! TACCATGGTCTAGATTTTTG+AGG - tig0018646:71076-71095 Msa1368400:intron 35.0%
! ACCATGGTCTAGATTTTTGA+GGG - tig0018646:71077-71096 Msa1368400:intron 35.0%
CCCAATCTTTCAATGTAAAC+AGG + tig0018646:71418-71437 None:intergenic 35.0%
! TGACCAAAGCACAACTATTT+TGG - tig0018646:71567-71586 Msa1368400:intron 35.0%
CATCCAAAATAGTTGTGCTT+TGG + tig0018646:71573-71592 None:intergenic 35.0%
!! ACAACTATTTTGGATGTGCA+AGG - tig0018646:71577-71596 Msa1368400:intron 35.0%
AAGTATGAACAAAGCTGCAA+GGG - tig0018646:71907-71926 Msa1368400:intron 35.0%
TTTCTCTTCTATCTTAGGCA+TGG - tig0018646:72266-72285 Msa1368400:intron 35.0%
AGGCATGGCAATAGTTTAAA+TGG - tig0018646:72281-72300 Msa1368400:intron 35.0%
GCGTGACTTAATTAAGAAGT+CGG - tig0018646:72623-72642 Msa1368400:intron 35.0%
! ACTTGTACTTGTGCTGATAA+AGG - tig0018646:72772-72791 Msa1368400:CDS 35.0%
AAAACTACCTTCAAGATCTC+TGG + tig0018646:72835-72854 None:intergenic 35.0%
! CACAATAAAAGCTTTATCCG+GGG - tig0018646:72973-72992 Msa1368400:intron 35.0%
AGAAGAAACTGCATATCAGA+AGG - tig0018646:73018-73037 Msa1368400:intron 35.0%
GAAGAAACTGCATATCAGAA+GGG - tig0018646:73019-73038 Msa1368400:intron 35.0%
GACACTTGATGTTCATTGTT+TGG - tig0018646:73063-73082 Msa1368400:intron 35.0%
TTGGATCAACCCAAATCATA+TGG - tig0018646:73082-73101 Msa1368400:CDS 35.0%
AAAAAAGGTAGCAATGGAGT+TGG + tig0018646:73259-73278 None:intergenic 35.0%
!! TTTGTCAAGTACTGGAACAA+AGG + tig0018646:73317-73336 None:intergenic 35.0%
!! GCTGTTTTCGTAAGTTATCA+TGG - tig0018646:73523-73542 Msa1368400:intron 35.0%
AGACTATGTCAGAGAGTTTA+TGG + tig0018646:73602-73621 None:intergenic 35.0%
! TGGAATTATGGCACTTGTTA+TGG - tig0018646:73781-73800 Msa1368400:intron 35.0%
!! GGAATTATGGCACTTGTTAT+GGG - tig0018646:73782-73801 Msa1368400:intron 35.0%
TGCTTAATAATGCTCTAACC+AGG - tig0018646:74023-74042 Msa1368400:CDS 35.0%
GCTTAATAATGCTCTAACCA+GGG - tig0018646:74024-74043 Msa1368400:CDS 35.0%
AGTACTCTTGAACAAGAGTT+GGG - tig0018646:74049-74068 Msa1368400:CDS 35.0%
TAGTGCCTAAAGTCCAAATA+GGG + tig0018646:74461-74480 None:intergenic 35.0%
AAGTTCTACTTGTCGAGTAA+GGG + tig0018646:74491-74510 None:intergenic 35.0%
!! ACTCACCAATTTTGACAGGT+CGG + tig0018646:69611-69630 None:intergenic 40.0%
!! GACTACTCACCAATTTTGAC+AGG + tig0018646:69615-69634 None:intergenic 40.0%
TCATGAGATGGAACATTCTG+AGG - tig0018646:70024-70043 Msa1368400:intron 40.0%
AAGGGTTGGGTCTATAAAGA+AGG - tig0018646:70060-70079 Msa1368400:intron 40.0%
ATTCATTCACCAAAAAGGGG+AGG - tig0018646:70113-70132 Msa1368400:intron 40.0%
! TTTTGATGCAGAAGAGTTGC+AGG - tig0018646:70174-70193 Msa1368400:intron 40.0%
TGAGGATCATCATGCTTTGA+GGG + tig0018646:70244-70263 None:intergenic 40.0%
ATGAGGATCATCATGCTTTG+AGG + tig0018646:70245-70264 None:intergenic 40.0%
AAGTCAAACCTAACAGCTCA+CGG + tig0018646:70337-70356 None:intergenic 40.0%
ATTTCCAACCAATGTGGTGA+TGG - tig0018646:70412-70431 Msa1368400:CDS 40.0%
CACATACGTACATGAGCTTT+GGG - tig0018646:70806-70825 Msa1368400:intron 40.0%
CCATGGTACATTAACGTTAC+AGG + tig0018646:71064-71083 None:intergenic 40.0%
CCTGTAACGTTAATGTACCA+TGG - tig0018646:71061-71080 Msa1368400:intron 40.0%
TGTGGACAGATATGCTTAAG+TGG - tig0018646:71133-71152 Msa1368400:intron 40.0%
AGATATGCTTAAGTGGAGGA+AGG - tig0018646:71140-71159 Msa1368400:intron 40.0%
CTTAAGTGGAGGAAGGAATT+TGG - tig0018646:71147-71166 Msa1368400:intron 40.0%
!! ATTTGGTGCTGACACTATCA+TGG - tig0018646:71164-71183 Msa1368400:CDS 40.0%
TACTATCCACAAGGACATCA+TGG - tig0018646:71373-71392 Msa1368400:intron 40.0%
!! AGGACATCATGGAGTTGATA+AGG - tig0018646:71384-71403 Msa1368400:intron 40.0%
!! CATCATGGAGTTGATAAGGA+TGG - tig0018646:71388-71407 Msa1368400:intron 40.0%
GTTGTTGCAAGTAACATCAG+TGG - tig0018646:71456-71475 Msa1368400:CDS 40.0%
TTTGCTGCAATTGAACATGC+AGG + tig0018646:71538-71557 None:intergenic 40.0%
!! TATTTTGGATGTGCAAGGAG+TGG - tig0018646:71582-71601 Msa1368400:intron 40.0%
CAATGGTAGAGGATCCAATT+TGG + tig0018646:71719-71738 None:intergenic 40.0%
CTATCATACTGCAATGGTAG+AGG + tig0018646:71730-71749 None:intergenic 40.0%
ATGATAGTATGATGCTGCAG+CGG - tig0018646:71743-71762 Msa1368400:intron 40.0%
ATCCAGGTTCAAATCCAACA+AGG - tig0018646:71772-71791 Msa1368400:intron 40.0%
GAAGTATGAACAAAGCTGCA+AGG - tig0018646:71906-71925 Msa1368400:intron 40.0%
! CGCTAATGAAGCACCATTAA+TGG + tig0018646:72108-72127 None:intergenic 40.0%
GATGATGAACATACGGTTCA+GGG + tig0018646:72349-72368 None:intergenic 40.0%
! TGATGATGAACATACGGTTC+AGG + tig0018646:72350-72369 None:intergenic 40.0%
!! CAGCGTTGATGATGAACATA+CGG + tig0018646:72356-72375 None:intergenic 40.0%
! GTTCTGGATTTAGGCTATTG+TGG - tig0018646:72376-72395 Msa1368400:intron 40.0%
!!! TGGATTTTTGAGGTGGTCTT+GGG + tig0018646:72426-72445 None:intergenic 40.0%
!!! ATGGATTTTTGAGGTGGTCT+TGG + tig0018646:72427-72446 None:intergenic 40.0%
!! GCTTACATGGATTTTTGAGG+TGG + tig0018646:72433-72452 None:intergenic 40.0%
! TGCTCTGGTATTTGTTACCT+AGG + tig0018646:72546-72565 None:intergenic 40.0%
AGTGAACTTCCAGAGTTCTT+GGG - tig0018646:72745-72764 Msa1368400:CDS 40.0%
! TGTACTTGTGCTGATAAAGG+TGG - tig0018646:72775-72794 Msa1368400:CDS 40.0%
AAGATCTCTGGATCATTCCA+TGG + tig0018646:72823-72842 None:intergenic 40.0%
GAATGATCCAGAGATCTTGA+AGG - tig0018646:72825-72844 Msa1368400:CDS 40.0%
TGAGCCATCTAATTCATCCA+AGG + tig0018646:72935-72954 None:intergenic 40.0%
TAGATGGCTCAAAATGGTGT+TGG - tig0018646:72944-72963 Msa1368400:intron 40.0%
CAATGAACATCAAGTGTCTC+TGG + tig0018646:73061-73080 None:intergenic 40.0%
TCAACTGCTTTGTCAAGTAC+TGG + tig0018646:73325-73344 None:intergenic 40.0%
! ACAAAGCAGTTGATTCTTCG+TGG - tig0018646:73332-73351 Msa1368400:intron 40.0%
GACAAATACGTGCTTTCGAA+AGG - tig0018646:73373-73392 Msa1368400:intron 40.0%
AATACGTGCTTTCGAAAGGT+AGG - tig0018646:73377-73396 Msa1368400:intron 40.0%
GAGTAACAATCTGCAGCATA+AGG + tig0018646:73713-73732 None:intergenic 40.0%
GCTACTTGTCATGCGAATTA+TGG + tig0018646:73816-73835 None:intergenic 40.0%
ATCACAGAAGCAGCACTTTA+TGG - tig0018646:73848-73867 Msa1368400:intron 40.0%
GGCAACTCAGTGTATTATGA+TGG - tig0018646:73872-73891 Msa1368400:intron 40.0%
AATTGCAGGTGCTTTCATCA+TGG + tig0018646:73900-73919 None:intergenic 40.0%
!!! AGCATTTCCTCTTTTTCAGG+AGG + tig0018646:74007-74026 None:intergenic 40.0%
CAGTACTCTTGAACAAGAGT+TGG - tig0018646:74048-74067 Msa1368400:CDS 40.0%
TGACTCCCTATTTGGACTTT+AGG - tig0018646:74453-74472 Msa1368400:intron 40.0%
CTAGTGCCTAAAGTCCAAAT+AGG + tig0018646:74462-74481 None:intergenic 40.0%
CTATTTGGACTTTAGGCACT+AGG - tig0018646:74460-74479 Msa1368400:intron 40.0%
CAAGTTCTACTTGTCGAGTA+AGG + tig0018646:74492-74511 None:intergenic 40.0%
ACTCGACAAGTAGAACTTGA+AGG - tig0018646:74493-74512 Msa1368400:intron 40.0%
!! ATTTTGACAGGTCGGTCAAG+AGG + tig0018646:69603-69622 None:intergenic 45.0%
CTTGACCGACCTGTCAAAAT+TGG - tig0018646:69603-69622 Msa1368400:intron 45.0%
GGTTGGGTCTATAAAGAAGG+TGG - tig0018646:70063-70082 Msa1368400:intron 45.0%
TGATTTGACCGTGAGCTGTT+AGG - tig0018646:70326-70345 Msa1368400:CDS 45.0%
GATTCCATCACCACATTGGT+TGG + tig0018646:70419-70438 None:intergenic 45.0%
CCAAAGCTCATGTACGTATG+TGG + tig0018646:70808-70827 None:intergenic 45.0%
CCACATACGTACATGAGCTT+TGG - tig0018646:70805-70824 Msa1368400:intron 45.0%
GCCCTCAAAAATCTAGACCA+TGG + tig0018646:71081-71100 None:intergenic 45.0%
GGACAGATATGCTTAAGTGG+AGG - tig0018646:71136-71155 Msa1368400:intron 45.0%
TCAACTCCATGATGTCCTTG+TGG + tig0018646:71382-71401 None:intergenic 45.0%
ACCATGTACGAGAGTTTGAG+AGG - tig0018646:71494-71513 Msa1368400:CDS 45.0%
CCATGTACGAGAGTTTGAGA+GGG - tig0018646:71495-71514 Msa1368400:intron 45.0%
! TGCCTTGTTGGATTTGAACC+TGG + tig0018646:71777-71796 None:intergenic 45.0%
!! CATCAATCTTCTGAAGCCTC+TGG + tig0018646:71940-71959 None:intergenic 45.0%
CAGAGGCTTCAGAAGATTGA+TGG - tig0018646:71938-71957 Msa1368400:intron 45.0%
! TGATGGTGACAACTATCCTG+AGG - tig0018646:71955-71974 Msa1368400:intron 45.0%
CGTATGTTCATCATCAACGC+TGG - tig0018646:72354-72373 Msa1368400:intron 45.0%
!! TTCATCATCAACGCTGGTTC+TGG - tig0018646:72360-72379 Msa1368400:intron 45.0%
!! TCAACGCTGGTTCTGGATTT+AGG - tig0018646:72367-72386 Msa1368400:intron 45.0%
TGATTCATTGACCAGGTCCT+AGG - tig0018646:72526-72545 Msa1368400:intron 45.0%
! GGTATTTGTTACCTAGGACC+TGG + tig0018646:72540-72559 None:intergenic 45.0%
! TGACTTCAAGCAACTTGCTC+TGG + tig0018646:72561-72580 None:intergenic 45.0%
TGCTTGAAGTCATTGATGCC+AGG - tig0018646:72569-72588 Msa1368400:intron 45.0%
! CAAGAACTCTGGAAGTTCAC+TGG + tig0018646:72746-72765 None:intergenic 45.0%
CAGTGAACTTCCAGAGTTCT+TGG - tig0018646:72744-72763 Msa1368400:CDS 45.0%
TGGATGCATGCTATCTGACA+AGG - tig0018646:72795-72814 Msa1368400:CDS 45.0%
GGATGCATGCTATCTGACAA+GGG - tig0018646:72796-72815 Msa1368400:CDS 45.0%
! AAAAGCTTTATCCGGGGTTG+AGG - tig0018646:72979-72998 Msa1368400:intron 45.0%
! GATTGTTTTCTCCTCAACCC+CGG + tig0018646:72993-73012 None:intergenic 45.0%
! GCTGCTTCTGTGATTTTCCT+TGG + tig0018646:73842-73861 None:intergenic 45.0%
ACAGAAGCAGCACTTTATGG+TGG - tig0018646:73851-73870 Msa1368400:intron 45.0%
!!! TCTTTTTCAGGAGGCATGAC+AGG + tig0018646:73998-74017 None:intergenic 45.0%
TGTCATGCCTCCTGAAAAAG+AGG - tig0018646:73997-74016 Msa1368400:CDS 45.0%
!! TTGTTCAAGAGTACTGACCC+TGG + tig0018646:74044-74063 None:intergenic 45.0%
AGAGTTGGGTGCAACCAAAA+AGG - tig0018646:74063-74082 Msa1368400:CDS 45.0%
!! TGGTGCTGACACTATCATGG+AGG - tig0018646:71167-71186 Msa1368400:CDS 50.0%
CCCTCTCAAACTCTCGTACA+TGG + tig0018646:71498-71517 None:intergenic 50.0%
!! CAATCTTCTGAAGCCTCTGG+AGG + tig0018646:71937-71956 None:intergenic 50.0%
! TTGAGGTGGTCTTGGGATCT+AGG + tig0018646:72419-72438 None:intergenic 50.0%
GAACTTCCAGAGTTCTTGGG+TGG - tig0018646:72748-72767 Msa1368400:CDS 50.0%
CAAGTACCACCCAAGAACTC+TGG + tig0018646:72757-72776 None:intergenic 50.0%
TGCTATCTGACAAGGGTCCA+TGG - tig0018646:72803-72822 Msa1368400:CDS 50.0%
GCATGACAAGTAGCATGCCA+AGG - tig0018646:73822-73841 Msa1368400:intron 50.0%
TATGGCCATGATGAAGCGCA+TGG - tig0018646:73934-73953 Msa1368400:intron 50.0%
TTCAGCCATGCGCTTCATCA+TGG + tig0018646:73942-73961 None:intergenic 50.0%
! GCTGTGCTTCCTCCCCTTTT+TGG + tig0018646:70125-70144 None:intergenic 55.0%
GTATGATGCTGCAGCGGTAG+AGG - tig0018646:71749-71768 Msa1368400:intron 55.0%
CATACGGTTCAGGGACTGTG+TGG + tig0018646:72340-72359 None:intergenic 55.0%
GCTTACAGTTCCGCTTCCAC+TGG - tig0018646:74643-74662 Msa1368400:five_prime_UTR 55.0%
! ACAGGTCGGTCAAGAGGTGC+GGG + tig0018646:69597-69616 None:intergenic 60.0%
GACAGGTCGGTCAAGAGGTG+CGG + tig0018646:69598-69617 None:intergenic 60.0%
CTGCAAGGGATCTCCTCCAG+AGG - tig0018646:71921-71940 Msa1368400:intron 60.0%
GCTGCAGCGGTAGAGGATCC+AGG - tig0018646:71756-71775 Msa1368400:intron 65.0%
Chromosome Type Strat End Strand Name
tig0018646 gene 69592 74668 69592 ID=Msa1368400;Name=Msa1368400
tig0018646 mRNA 69592 74668 69592 ID=Msa1368400-mRNA-1;Parent=Msa1368400;Name=Msa1368400-mRNA-1;_AED=0.13;_eAED=0.13;_QI=41|0.41|0.30|0.84|0.91|0.84|13|0|549
tig0018646 exon 69592 69609 69592 ID=Msa1368400-mRNA-1:exon:445;Parent=Msa1368400-mRNA-1
tig0018646 exon 69714 69785 69714 ID=Msa1368400-mRNA-1:exon:444;Parent=Msa1368400-mRNA-1
tig0018646 exon 70176 70537 70176 ID=Msa1368400-mRNA-1:exon:443;Parent=Msa1368400-mRNA-1
tig0018646 exon 70866 70962 70866 ID=Msa1368400-mRNA-1:exon:442;Parent=Msa1368400-mRNA-1
tig0018646 exon 71155 71313 71155 ID=Msa1368400-mRNA-1:exon:441;Parent=Msa1368400-mRNA-1
tig0018646 exon 71414 71513 71414 ID=Msa1368400-mRNA-1:exon:440;Parent=Msa1368400-mRNA-1
tig0018646 exon 71670 71719 71670 ID=Msa1368400-mRNA-1:exon:439;Parent=Msa1368400-mRNA-1
tig0018646 exon 71814 71915 71814 ID=Msa1368400-mRNA-1:exon:438;Parent=Msa1368400-mRNA-1
tig0018646 exon 72284 72361 72284 ID=Msa1368400-mRNA-1:exon:437;Parent=Msa1368400-mRNA-1
tig0018646 exon 72657 72923 72657 ID=Msa1368400-mRNA-1:exon:436;Parent=Msa1368400-mRNA-1
tig0018646 exon 73072 73171 73072 ID=Msa1368400-mRNA-1:exon:435;Parent=Msa1368400-mRNA-1
tig0018646 exon 73985 74237 73985 ID=Msa1368400-mRNA-1:exon:434;Parent=Msa1368400-mRNA-1
tig0018646 exon 74636 74668 74636 ID=Msa1368400-mRNA-1:exon:433;Parent=Msa1368400-mRNA-1
tig0018646 five_prime_UTR 74636 74668 74636 ID=Msa1368400-mRNA-1:five_prime_utr;Parent=Msa1368400-mRNA-1
tig0018646 five_prime_UTR 74230 74237 74230 ID=Msa1368400-mRNA-1:five_prime_utr;Parent=Msa1368400-mRNA-1
tig0018646 CDS 73985 74229 73985 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 73072 73171 73072 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 72657 72923 72657 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 72284 72361 72284 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 71814 71915 71814 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 71670 71719 71670 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 71414 71513 71414 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 71155 71313 71155 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 70866 70962 70866 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 70176 70537 70176 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 69714 69785 69714 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
tig0018646 CDS 69592 69609 69592 ID=Msa1368400-mRNA-1:cds;Parent=Msa1368400-mRNA-1
Gene Sequence

>Msa1368400

ATGGAACATTCTGAGGATGAAAAAAAGAAAAGGGTTGGGTCTATAAAGAAGGTGGCAATGAGTGCCTCGAGCAAGTTCAAAAATTCATTCACCAAAAAGGGGAGGAAGCACAGCAGAGTTATGTCTATCTGTATTGAGGATAGTTTTGATGCAGAAGAGTTGCAGGCAGTTGATGCTTTTCGACAAACACTTATCTTAGAAGAGCTCTTACCCTCAAAGCATGATGATCCTCATATGATGCTAAGATTTTTGAGGGCAAGAAAGTATGACATAGAGAAAACAAAACAAATGTGGACAGATATGCTTAAGTGGAGGAAGGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCGAGGAACTAGATGAAGTTCTAAAATACTATCCACAAGGACATCATGGAGTTGATAAGGATGGAAGACCTGTTTACATTGAAAGATTGGGTCAAGTTGATTGTAACAAGTTGTTGCAAGTAACATCAGTGGAACGTTATCTCAAGTACCATGTACGAGAGTTTGAGAGGGCTTTTGCTGTTAAGTTGCCTGCATGTTCAATTGCAGCAAAGAAGCATATTGACCAAAGCACAACTATTTTGGATGTGCAAGGAGTGGGTCTTAGAAGTATGAACAAAGCTGCAAGGGATCTCCTCCAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCCTGAACCGTATGTTCATCATCAACGCTGGTTCTGGATTTAGGCTATTGTGGAACACTGTTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAGTCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACTTGTGCTGATAAAGGTGGATGCATGCTATCTGACAAGGGTCCATGGAATGATCCAGAGATCTTGAAGATGGCTCAAAATGGTGTTGGCAAATACACAATAAAAGCTTTATCCGGGGTTGAGGAGAAAACAATCAAACAAGAAGAAACTGCATATCAGAAGGGATTCAAAGATTCATTTCCAGAGACACTTGATGTTCATTGTTTGGATCAACCCAAATCATATGGTGTTTATCAGTATGATTCCTTTGTTCCAGTACTTGACAAAGCAGTTGATTCTTCGTGGAAGAAAACAATACAAAATGACAAATACGTGCTTTCGAAAGATTGTTACTCCAACAATAATGGAATGAATTCTGGTGGATTTAGCAAACAATTTGTTGGTGGAATTATGGCACTTGTTATGGGAATTGTGACCATAATTCGCATGACAAGTAGCATGCCAAGGAAAATCACAGAAGCAGCACTTTATGGTGGCAACTCAGTGTATTATGATGGCTCCATGATGAAAGCACCTGCAATTTCAAACAATGAGTATATGGCCATGATGAAGCGCATGGCTGAACTTGAAGAGAAAGTCACTGTTCTCAGTGTTAAGCCTGTCATGCCTCCTGAAAAAGAGGAAATGCTTAATAATGCTCTAACCAGGGTCAGTACTCTTGAACAAGAGTTGGGTGCAACCAAAAAGGCACTAGGAGATGCCCTTACTCGACAAGTAGAACTTGAAGGTCAAATTGAAAAGAAGAAAAAGAAGAAGTTGTTCCGCTTCCACTGGTGA

Protein sequence

>Msa1368400

MEHSEDEKKKRVGSIKKVAMSASSKFKNSFTKKGRKHSRVMSICIEDSFDAEELQAVDAFRQTLILEELLPSKHDDPHMMLRFLRARKYDIEKTKQMWTDMLKWRKEFGADTIMEDFEFEELDEVLKYYPQGHHGVDKDGRPVYIERLGQVDCNKLLQVTSVERYLKYHVREFERAFAVKLPACSIAAKKHIDQSTTILDVQGVGLRSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKMAQNGVGKYTIKALSGVEEKTIKQEETAYQKGFKDSFPETLDVHCLDQPKSYGVYQYDSFVPVLDKAVDSSWKKTIQNDKYVLSKDCYSNNNGMNSGGFSKQFVGGIMALVMGIVTIIRMTSSMPRKITEAALYGGNSVYYDGSMMKAPAISNNEYMAMMKRMAELEEKVTVLSVKPVMPPEKEEMLNNALTRVSTLEQELGATKKALGDALTRQVELEGQIEKKKKKKLFRFHW*