AlfalfaGEDB | Msa1364970

M. sativa cultivar zhongmu-4 / Msa1364970

KEGG: K04733
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364970	XP_039688147.1	94.155	633	24	3	1	630	1	623	0.0	1216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364970	sp\|B5X4Z9\|STU_ARATH	45.614	627	289	17	1	611	6	596	7.22e-160	475

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364970	G7J8I1	93.997	633	25	3	1	630	1	623	0.0	1214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024500	Msa1364970	-0.804524	2.073045e-49	-8.615850e-47
Msa0030050	Msa1364970	0.806127	9.563449e-50	-8.615850e-47
Msa0037180	Msa1364970	0.854963	8.669193e-62	-8.615850e-47
Msa0037280	Msa1364970	0.824438	8.071420e-54	-8.615850e-47
Msa0045310	Msa1364970	0.811772	5.923420e-51	-8.615850e-47
Msa0072390	Msa1364970	-0.808594	2.868874e-50	-8.615850e-47
Msa0074860	Msa1364970	-0.801938	7.111105e-49	-8.615850e-47
Msa0075990	Msa1364970	-0.809425	1.904418e-50	-8.615850e-47
Msa0076640	Msa1364970	0.835972	1.229313e-56	-8.615850e-47
Msa0087550	Msa1364970	0.818830	1.596969e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364970	MtrunA17_Chr3g0145591	93.750	496	26	2	138	630	1	494	0.0	955
Msa1364970	MtrunA17_Chr4g0036981	58.544	673	207	16	1	630	1	644	0.0	714
Msa1364970	MtrunA17_Chr1g0159711	39.885	697	340	17	6	630	12	701	3.16e-146	440
Msa1364970	MtrunA17_Chr3g0130431	38.728	692	345	19	6	630	11	690	9.78e-143	431
Msa1364970	MtrunA17_Chr3g0125281	45.127	472	203	11	211	630	287	754	2.03e-122	380
Msa1364970	MtrunA17_Chr3g0125281	36.301	146	75	4	6	134	13	157	1.55e-18	90.1
Msa1364970	MtrunA17_Chr5g0412141	41.279	344	167	7	272	610	126	439	3.52e-74	245
Msa1364970	MtrunA17_Chr5g0413511	42.712	295	159	6	272	560	47	337	1.95e-72	238
Msa1364970	MtrunA17_Chr2g0286821	42.138	318	172	5	267	581	110	418	2.32e-72	240
Msa1364970	MtrunA17_Chr3g0111431	44.277	332	174	8	281	602	178	508	3.64e-72	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364970	AT2G16750.2	45.614	627	289	17	1	611	6	596	7.34e-161	475
Msa1364970	AT2G16750.1	45.614	627	289	17	1	611	6	596	7.34e-161	475
Msa1364970	AT1G77280.2	37.281	743	340	17	6	630	19	753	2.45e-148	447
Msa1364970	AT1G77280.1	37.281	743	340	17	6	630	19	753	2.45e-148	447
Msa1364970	AT4G35030.7	53.012	415	175	9	210	613	24	429	1.77e-142	422
Msa1364970	AT4G35030.3	53.012	415	175	9	210	613	24	429	1.77e-142	422
Msa1364970	AT4G35030.6	53.012	415	175	9	210	613	24	429	1.77e-142	422
Msa1364970	AT4G35030.5	53.012	415	175	9	210	613	24	429	1.77e-142	422
Msa1364970	AT5G63940.1	36.782	696	353	18	8	630	22	703	7.16e-136	414
Msa1364970	AT4G35030.2	54.674	353	146	7	210	551	24	373	3.92e-127	380

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Find 133 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGATTGGAATTGGA+GGG	0.677066	tig0018197:+30978	Msa1364970:CDS
AAATTTCAGGTAAGTCTCTC+GGG	0.476750	tig0018197:+30014	Msa1364970:intron
AAGATAGATGTTTATGCCTT+TGG	0.370835	tig0018197:+31828	Msa1364970:CDS
AATGGATATAGGTAAGAACA+AGG	0.647654	tig0018197:+31409	Msa1364970:intron
ACAATGGGTAATGAACTTAC+CGG	0.507457	tig0018197:+30699	Msa1364970:CDS
ACACAGTTCATCTCAAATTG+AGG	0.519177	tig0018197:+30753	Msa1364970:CDS
ACAGAAAATGTGATTGGAAT+TGG	0.314459	tig0018197:+30974	Msa1364970:intron
ACAGAGGAACCCTCCCCGAT+GGG	0.597981	tig0018197:+31014	Msa1364970:CDS
ACAGATTTAAGGTAGCTGTT+GGG	0.509292	tig0018197:+31456	Msa1364970:CDS
ACATCCCCACTCTCTAAAAT+TGG	0.222667	tig0018197:-31942	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGCAATAACATAATCACG+AGG	-	tig0018197:29710-29729	None:intergenic	30.0%
CTCTAAATAATCATCTACCA+AGG	-	tig0018197:29881-29900	None:intergenic	30.0%
CTTGGTAGATGATTATTTAG+AGG	+	tig0018197:29879-29898	Msa1364970:CDS	30.0%
TGAATAAGAAAAGGACAGTT+AGG	-	tig0018197:29958-29977	None:intergenic	30.0%
ATTTGGCCTCATTAAATTTC+AGG	+	tig0018197:30001-30020	Msa1364970:intron	30.0%
GACTTACCTGAAATTTAATG+AGG	-	tig0018197:30010-30029	None:intergenic	30.0%
CAGAAGAAAAGAATGAATGA+CGG	-	tig0018197:30139-30158	None:intergenic	30.0%
ATGAATATGATTATGCTAGG+TGG	+	tig0018197:30439-30458	Msa1364970:CDS	30.0%
CCAAGAAGACAAAAGAAAAT+GGG	+	tig0018197:30558-30577	Msa1364970:CDS	30.0%
ACAGAAAATGTGATTGGAAT+TGG	+	tig0018197:30974-30993	Msa1364970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018197	gene	29611	32426	29611	ID=Msa1364970;Name=Msa1364970
tig0018197	mRNA	29611	32426	29611	ID=Msa1364970-mRNA-1;Parent=Msa1364970;Name=Msa1364970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0.11\|1\|1\|1\|9\|0\|630
tig0018197	exon	29611	29749	29611	ID=Msa1364970-mRNA-1:exon:14324;Parent=Msa1364970-mRNA-1
tig0018197	exon	29857	29930	29857	ID=Msa1364970-mRNA-1:exon:14325;Parent=Msa1364970-mRNA-1
tig0018197	exon	30023	30117	30023	ID=Msa1364970-mRNA-1:exon:14326;Parent=Msa1364970-mRNA-1
tig0018197	exon	30188	30280	30188	ID=Msa1364970-mRNA-1:exon:14327;Parent=Msa1364970-mRNA-1
tig0018197	exon	30408	30865	30408	ID=Msa1364970-mRNA-1:exon:14328;Parent=Msa1364970-mRNA-1
tig0018197	exon	30978	31226	30978	ID=Msa1364970-mRNA-1:exon:14329;Parent=Msa1364970-mRNA-1
tig0018197	exon	31420	31580	31420	ID=Msa1364970-mRNA-1:exon:14330;Parent=Msa1364970-mRNA-1
tig0018197	exon	31705	32085	31705	ID=Msa1364970-mRNA-1:exon:14331;Parent=Msa1364970-mRNA-1
tig0018197	exon	32184	32426	32184	ID=Msa1364970-mRNA-1:exon:14332;Parent=Msa1364970-mRNA-1
tig0018197	CDS	29611	29749	29611	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	29857	29930	29857	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	30023	30117	30023	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	30188	30280	30188	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	30408	30865	30408	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	30978	31226	30978	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	31420	31580	31420	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	31705	32085	31705	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1
tig0018197	CDS	32184	32426	32184	ID=Msa1364970-mRNA-1:cds;Parent=Msa1364970-mRNA-1

Gene Sequence

>Msa1364970

ATGACAGTGAAAGAGAGATGTGTTTTGGTGGGAATTAGAATTGATAGGCATAGCAGCAGACAGCTCCTCAACTGGGCTATAGCCAAAGTTGCTCAACCTCGTGATTATGTTATTGCAATCCATGTTGTTACGACTATAGATCATGTTTCTGAAAGCAAGGCCTTGGTAGATGATTATTTAGAGGTTTATCAAGGGATGTGCGATGCCAAAAAGGTAAGTCTCTCGGGTCATATCTTGACAGGAACAACTTTTAGAAATATTCTCATCACAGAAGCAAAAAACCGTGCTGCTATTGCTCTAGTGGTAGGGGGTGGAGCTTCCACGGCTAAATATTGCGCCAAACGAGTACCAGGCAGCACCAATGTTATCGGTATTCAGGGTGCAAGAATTGTGTTCCAAAGGAAATTTACTATAGCAAATTTGTTTCCAACTATGAATATGATTATGCTAGGTGGCATTATAGAGGATCCTAGACCGAGTCTTATCAGCAGGGTGGTCCAGTCTGCATTTGGCACTGACAACTCAGAGAATGAGAATGAGAAATCGAGAAGCCAAGAAGACAAAAGAAAATGGGAGGAAGAAACATTTAAAGAAGAGATGAAAGTGTCATCAAGATTATCAACATCGCAGAAGCTTGGTTGGCCACTTCTCCGCAGGATGCATACAGAAATCTCAAGGGACATGTCTGTTGTACAATGGGTAATGAACTTACCGGATCGCTCAACACACAAATATAATAACAATAGACACAGTTCATCTCAAATTGAGGGCCAGAGCTATAAAAATGTTATTAGTTTCAGTAGCTGCAAGTGGTTTATCTTTGAGGTTCTCAACTCTTGCACTTGTCAATTCTCTTCAGAAAATGTGATTGGAATTGGAGGGAGCAATCGCGTGTACAGAGGAACCCTCCCCGATGGGAAGCCAGTGGCAATCAAAGTTATGCAGTCATCAAAAGAAGCTTTCAAAGATTTTGCACTTGAAGTTGAAATAATGTCCTCATTGAACCACCCACGCATCACTCCTCAGCTAGGGATTTGCATTAGAGATGAGACTTTGATATCTGTTTATGATTATTTCCCCCAAGGAACCTTAGACCAAAATCTACGCGGTAAGAACAAGGATGAATCTATGTTGACATGGGAAGACAGATTTAAGGTAGCTGTTGGGATTGGTGAAGCACTGAATTACCTGCACAAGCACAACAAGCCTATTATACATAGAGACGTCAAGTCTTCCAACATTCTTCTTTCCGAAGGGTTTGAGCCACATTTATCTGATTTTGGACTTGCCATGTGGGGACCAACAACTTCATCTTTTGTGATACAAGACGATGTAGTTGGAACTTTTGGTTATCTTGCACCTGAATACTTCATGTATGGAAAGGTTAGTGACAAGATAGATGTTTATGCCTTTGGTGTGGTGCTACTTGAACTTATATCAGGAAGGGAACCAATTGACTCCAAAACTTGTGAAGGACTCGAAATCAGTTTGGTCACATGGGCAAAACCAATTTTAGAGAGTGGGGATGTTAAAAGCTTATTGGATCCAAAGTTGCAAGGAAAATTTGATGTAGCACAAATGCACAGAATGGTTCTTGCAGCATCTCTGTGCATTACACGAGCTGCGCGACTTCGTCCTAATATGAATCAGATACTGAAGATCTTAAACGGATGTGATGAGAAAGTCGAAAACATGTTTAAATCTCAGGAGAGTGATCATGATCATGATCATTCTGAAAATCTTGATGATGAAGTCTATCCAAATTCAAGTGCAGAATTGCACCTTAGCCTTGCATTACTTGACGTTGACAATGATACTGCATCATCGTATAGTAGTATCGGCATTAATGAATATTTGAAAGAACATTGGAGCCGATCATCTAGTTTCAATTAG

Protein sequence

>Msa1364970

MTVKERCVLVGIRIDRHSSRQLLNWAIAKVAQPRDYVIAIHVVTTIDHVSESKALVDDYLEVYQGMCDAKKVSLSGHILTGTTFRNILITEAKNRAAIALVVGGGASTAKYCAKRVPGSTNVIGIQGARIVFQRKFTIANLFPTMNMIMLGGIIEDPRPSLISRVVQSAFGTDNSENENEKSRSQEDKRKWEEETFKEEMKVSSRLSTSQKLGWPLLRRMHTEISRDMSVVQWVMNLPDRSTHKYNNNRHSSSQIEGQSYKNVISFSSCKWFIFEVLNSCTCQFSSENVIGIGGSNRVYRGTLPDGKPVAIKVMQSSKEAFKDFALEVEIMSSLNHPRITPQLGICIRDETLISVYDYFPQGTLDQNLRGKNKDESMLTWEDRFKVAVGIGEALNYLHKHNKPIIHRDVKSSNILLSEGFEPHLSDFGLAMWGPTTSSFVIQDDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPIDSKTCEGLEISLVTWAKPILESGDVKSLLDPKLQGKFDVAQMHRMVLAASLCITRAARLRPNMNQILKILNGCDEKVENMFKSQESDHDHDHSENLDDEVYPNSSAELHLSLALLDVDNDTASSYSSIGINEYLKEHWSRSSSFN*