Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459240 | RHN49384.1 | 97.396 | 192 | 5 | 0 | 4 | 195 | 81 | 272 | 2.61e-130 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459240 | sp|Q96PZ0|PUS7_HUMAN | 29.474 | 190 | 86 | 4 | 6 | 194 | 514 | 656 | 4.13e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459240 | A0A396HC76 | 97.396 | 192 | 5 | 0 | 4 | 195 | 81 | 272 | 1.25e-130 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1427760 | Msa1459240 | 0.805220 | 1.483045e-49 | -8.615850e-47 |
| Msa0623080 | Msa1459240 | 0.801073 | 1.069487e-48 | -8.615850e-47 |
| Msa0128020 | Msa1459240 | 0.805966 | 1.034051e-49 | -8.615850e-47 |
| Msa0179280 | Msa1459240 | 0.804436 | 2.162211e-49 | -8.615850e-47 |
| Msa0420840 | Msa1459240 | 0.820652 | 6.125214e-53 | -8.615850e-47 |
| Msa0480320 | Msa1459240 | 0.823105 | 1.656775e-53 | -8.615850e-47 |
| Msa0981820 | Msa1459240 | -0.816079 | 6.653807e-52 | -8.615850e-47 |
| Msa0993290 | Msa1459240 | 0.800880 | 1.170812e-48 | -8.615850e-47 |
| Msa0993600 | Msa1459240 | 0.804042 | 2.611933e-49 | -8.615850e-47 |
| Msa0272480 | Msa1459240 | -0.815807 | 7.649865e-52 | -8.615850e-47 |
| Msa1214270 | Msa1459240 | 0.817706 | 2.869035e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459240 | MtrunA17_Chr7g0273931 | 97.396 | 192 | 5 | 0 | 4 | 195 | 81 | 272 | 2.40e-134 | 377 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459240 | AT3G04820.1 | 55.556 | 207 | 61 | 4 | 4 | 194 | 524 | 715 | 2.18e-64 | 211 |
Find 40 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACAGATTTAGATAAAAT+TGG | 0.218605 | tig0040144:-16512 | Msa1459240:CDS |
| GTGTTCTCTGTGATAATTAC+TGG | 0.234954 | tig0040144:+15961 | None:intergenic |
| CGCACTGTGTTGACAATTAT+AGG | 0.247542 | tig0040144:+16479 | None:intergenic |
| TAAAGTGGGTTTACTTGATA+TGG | 0.265079 | tig0040144:-18443 | None:intergenic |
| TGTGGTAATATTACTTCCTT+TGG | 0.298357 | tig0040144:+16389 | None:intergenic |
| TTCTCGATCACTAGTGTTAC+TGG | 0.339169 | tig0040144:-16726 | Msa1459240:CDS |
| CATCATCAGAGCTCTCTAAT+TGG | 0.343057 | tig0040144:+16414 | None:intergenic |
| AGAAACCAATTGACTTTGAA+TGG | 0.360331 | tig0040144:-16683 | Msa1459240:intron |
| ATACACTTTGACAATATCAT+TGG | 0.387320 | tig0040144:+18210 | None:intergenic |
| CTAGTGTTACTGGAAGTTAC+AGG | 0.422890 | tig0040144:-16716 | Msa1459240:CDS |
| AGCTAAAGAATAAGTACAAC+AGG | 0.431991 | tig0040144:+15672 | None:intergenic |
| AGGTCGACTTGAGAGCAGTA+TGG | 0.438734 | tig0040144:+16330 | None:intergenic |
| ATGTACCATTCAAAGTCAAT+TGG | 0.478182 | tig0040144:+16678 | None:intergenic |
| TCTAATTCTCAGTGGATGAC+TGG | 0.487733 | tig0040144:-15910 | Msa1459240:three_prime_UTR |
| GCGTGCACTAAATGAGCAAA+AGG | 0.498418 | tig0040144:-16459 | Msa1459240:CDS |
| ACTTTGACAATATCATTGGT+TGG | 0.509849 | tig0040144:+18214 | None:intergenic |
| AGTTGAATACTGTCAAGTAC+TGG | 0.512096 | tig0040144:-15794 | Msa1459240:three_prime_UTR |
| TTCTTCATCTTATGCGACAA+TGG | 0.529849 | tig0040144:-16297 | Msa1459240:CDS |
| TCTAAATCTGTCTCTACCAA+TGG | 0.530928 | tig0040144:+16521 | None:intergenic |
| ATCAAGAAAATTTGCATCGT+AGG | 0.532049 | tig0040144:-15577 | Msa1459240:three_prime_UTR |
| AGATGAAGAAGGAAGAGTAA+AGG | 0.549861 | tig0040144:+16310 | None:intergenic |
| GATCAAACTTACCCTGGCAT+AGG | 0.550095 | tig0040144:+18360 | None:intergenic |
| GGTCGACTTGAGAGCAGTAT+GGG | 0.553636 | tig0040144:+16331 | None:intergenic |
| AGTCTTGAGAGCTGGAGTCA+TGG | 0.554121 | tig0040144:+16354 | None:intergenic |
| GATGTCATCCTTCCTATGCC+AGG | 0.554785 | tig0040144:-18372 | Msa1459240:CDS |
| GTGGGTTTACTTGATATGGC+AGG | 0.554966 | tig0040144:-18439 | None:intergenic |
| TACTGATAGTAATAAGCCAT+TGG | 0.567717 | tig0040144:-16537 | Msa1459240:CDS |
| AGTATGGGAGTCTTGAGAGC+TGG | 0.568108 | tig0040144:+16346 | None:intergenic |
| GAGCTCTGATGATGCTCCAA+AGG | 0.578873 | tig0040144:-16405 | Msa1459240:CDS |
| AACGCACTAAAACTAATACA+TGG | 0.593196 | tig0040144:+15744 | None:intergenic |
| AAACTTACCCTGGCATAGGA+AGG | 0.605512 | tig0040144:+18364 | None:intergenic |
| ATGTCATCCTTCCTATGCCA+GGG | 0.617570 | tig0040144:-18371 | Msa1459240:intron |
| ATACAACTCTACTTCGAACA+AGG | 0.626540 | tig0040144:+15875 | None:intergenic |
| CATGTGTCTAAAGAAAGCAT+AGG | 0.627166 | tig0040144:+15636 | None:intergenic |
| ATTGTCGCATAAGATGAAGA+AGG | 0.639357 | tig0040144:+16299 | None:intergenic |
| CAAATGTTTCTAATTCTCAG+TGG | 0.642508 | tig0040144:-15918 | Msa1459240:three_prime_UTR |
| TCATGGACAGATTCATCATG+TGG | 0.643774 | tig0040144:+16371 | None:intergenic |
| GTGTTACTGGAAGTTACAGG+AGG | 0.646693 | tig0040144:-16713 | Msa1459240:CDS |
| TGTTACTGGAAGTTACAGGA+GGG | 0.664004 | tig0040144:-16712 | Msa1459240:CDS |
| AATTTGCAGTAGAAAAGTCG+CGG | 0.719293 | tig0040144:+15819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTATGATATTTGAT+TGG | - | tig0040144:16254-16273 | Msa1459240:intron | 10.0% |
| !!! | AATAAGTTGATTTTTAAATT+TGG | - | tig0040144:16417-16436 | Msa1459240:CDS | 10.0% |
| !! | TTAGTAAAATAAATCATTTA+TGG | + | tig0040144:17068-17087 | None:intergenic | 10.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | + | tig0040144:15943-15962 | None:intergenic | 15.0% |
| !! | AATATCATATAAGATGTTGT+TGG | - | tig0040144:15972-15991 | Msa1459240:exon | 20.0% |
| !!! | TATTTGAGGTTATATTTGAT+TGG | - | tig0040144:16206-16225 | Msa1459240:intron | 20.0% |
| !!! | CAGATTATTTTATTTCATGT+TGG | - | tig0040144:16299-16318 | Msa1459240:CDS | 20.0% |
| !!! | TGATTTTTAAATTTGGCTAT+AGG | - | tig0040144:16424-16443 | Msa1459240:CDS | 20.0% |
| !!! | TTTTGAGTTCTCAAAAATTA+GGG | + | tig0040144:16594-16613 | None:intergenic | 20.0% |
| !!! | TTTTTGAGTTCTCAAAAATT+AGG | + | tig0040144:16595-16614 | None:intergenic | 20.0% |
| !! | TGAGAACTCAAAAAATAAAT+TGG | - | tig0040144:16601-16620 | Msa1459240:intron | 20.0% |
| !! | GAGAACTCAAAAAATAAATT+GGG | - | tig0040144:16602-16621 | Msa1459240:intron | 20.0% |
| !! | AGAACTCAAAAAATAAATTG+GGG | - | tig0040144:16603-16622 | Msa1459240:intron | 20.0% |
| !! | TTTATCTTTACTTCTTATCA+GGG | - | tig0040144:17255-17274 | Msa1459240:intron | 20.0% |
| !! | GTACATAAAATAAGAGTAAA+AGG | + | tig0040144:17789-17808 | None:intergenic | 20.0% |
| !! | ATAGAAATACACATATCAAA+AGG | - | tig0040144:17874-17893 | Msa1459240:intron | 20.0% |
| !!! | TAAATAGAACAATTTTGCAT+TGG | + | tig0040144:17939-17958 | None:intergenic | 20.0% |
| !! | AATGCAAAATTGTTCTATTT+AGG | - | tig0040144:17938-17957 | Msa1459240:intron | 20.0% |
| !!! | ATTTTCTTGATATTATTCAG+CGG | + | tig0040144:18420-18439 | None:intergenic | 20.0% |
| !! | TTTTGAATTTAGATCTTCAG+TGG | + | tig0040144:15599-15618 | None:intergenic | 25.0% |
| ! | AAGTTTGATCAAATAATGTG+TGG | - | tig0040144:15659-15678 | Msa1459240:three_prime_UTR | 25.0% |
| ! | ATACACTTTGACAATATCAT+TGG | + | tig0040144:15799-15818 | None:intergenic | 25.0% |
| ! | TAGTATACTAGAATTACAAG+AGG | + | tig0040144:15856-15875 | None:intergenic | 25.0% |
| ! | AAAATTGCATATTGTCAAAC+AGG | + | tig0040144:15903-15922 | None:intergenic | 25.0% |
| ! | AAATATGGTTAAAGCATGTT+AGG | + | tig0040144:15928-15947 | None:intergenic | 25.0% |
| !! | CACTTTTGAACTATTATTTG+AGG | - | tig0040144:16192-16211 | Msa1459240:intron | 25.0% |
| !!! | TATTTGATTGGTTTGCATTT+TGG | - | tig0040144:16218-16237 | Msa1459240:intron | 25.0% |
| !!! | ATTTGATTGGTTTGCATTTT+GGG | - | tig0040144:16219-16238 | Msa1459240:intron | 25.0% |
| !!! | TATTTGATTGGTTTGCATTT+TGG | - | tig0040144:16218-16237 | Msa1459240:intron | 25.0% |
| !!! | ATTTGATTGGTTTGCATTTT+GGG | - | tig0040144:16219-16238 | Msa1459240:intron | 25.0% |
| !! | TTTGAGTTCTCAAAAATTAG+GGG | + | tig0040144:16593-16612 | None:intergenic | 25.0% |
| ! | GAACTCAAAAAATAAATTGG+GGG | - | tig0040144:16604-16623 | Msa1459240:intron | 25.0% |
| ! | GCTGAGAATATCATAAAAAA+GGG | + | tig0040144:16681-16700 | None:intergenic | 25.0% |
| ! | TGCTGAGAATATCATAAAAA+AGG | + | tig0040144:16682-16701 | None:intergenic | 25.0% |
| !! | ATAACCTTTAGACTTTGTTT+GGG | + | tig0040144:16798-16817 | None:intergenic | 25.0% |
| ! | TATAACCTTTAGACTTTGTT+TGG | + | tig0040144:16799-16818 | None:intergenic | 25.0% |
| ! | TTAATATTCAGTAGTTGAGT+TGG | - | tig0040144:16882-16901 | Msa1459240:CDS | 25.0% |
| ! | GAATGAACCATAAATATATG+CGG | + | tig0040144:17007-17026 | None:intergenic | 25.0% |
| ! | GTAAAGATAAACTAGAGTAA+GGG | + | tig0040144:17246-17265 | None:intergenic | 25.0% |
| ! | AGTAAAGATAAACTAGAGTA+AGG | + | tig0040144:17247-17266 | None:intergenic | 25.0% |
| ! | GTTTATCTTTACTTCTTATC+AGG | - | tig0040144:17254-17273 | Msa1459240:intron | 25.0% |
| ! | GAGACAGATTTAGATAAAAT+TGG | - | tig0040144:17494-17513 | Msa1459240:intron | 25.0% |
| !! | TAGTTTTCTCTATATTATGC+TGG | - | tig0040144:18159-18178 | Msa1459240:intron | 25.0% |
| ! | AATTGCTACAGTACAAAAAT+AGG | + | tig0040144:18305-18324 | None:intergenic | 25.0% |
| TTATTTGATCAAACTTACCC+TGG | + | tig0040144:15655-15674 | None:intergenic | 30.0% | |
| ATTTATGATCTTGCAGTTCA+CGG | - | tig0040144:15760-15779 | Msa1459240:three_prime_UTR | 30.0% | |
| ACTTTGACAATATCATTGGT+TGG | + | tig0040144:15795-15814 | None:intergenic | 30.0% | |
| TCAAACAGGTCATCTAATAA+GGG | + | tig0040144:15889-15908 | None:intergenic | 30.0% | |
| TATATGTGTCATAGTCAACT+AGG | - | tig0040144:16087-16106 | Msa1459240:intron | 30.0% | |
| TCAACTAGGTCATGTAATAT+GGG | - | tig0040144:16101-16120 | Msa1459240:intron | 30.0% | |
| TATGTGTATGATGATATCCA+AGG | - | tig0040144:16143-16162 | Msa1459240:intron | 30.0% | |
| ! | TTCATTTTATTGTGTCAAGC+TGG | - | tig0040144:16351-16370 | Msa1459240:CDS | 30.0% |
| !! | CATTACTGATTTCATAGCAA+AGG | + | tig0040144:16384-16403 | None:intergenic | 30.0% |
| ATAGGTTATAGCTATAGCTA+TGG | - | tig0040144:16442-16461 | Msa1459240:CDS | 30.0% | |
| ! | TATGGCTTAAGGATTTGTTT+GGG | - | tig0040144:16460-16479 | Msa1459240:CDS | 30.0% |
| ! | TTAAGGATTTGTTTGGGAAT+TGG | - | tig0040144:16466-16485 | Msa1459240:CDS | 30.0% |
| TTGAGTTCTCAAAAATTAGG+GGG | + | tig0040144:16592-16611 | None:intergenic | 30.0% | |
| !!! | ATCTTGTTTGAGAGTGTTTT+TGG | + | tig0040144:16741-16760 | None:intergenic | 30.0% |
| AAAAACACTCTCAAACAAGA+TGG | - | tig0040144:16740-16759 | Msa1459240:intron | 30.0% | |
| AAAACACTCTCAAACAAGAT+GGG | - | tig0040144:16741-16760 | Msa1459240:intron | 30.0% | |
| !!! | CATGTTTGTTTTTACTGTTC+AGG | - | tig0040144:17095-17114 | Msa1459240:intron | 30.0% |
| !!! | TTTGTTTTTACTGTTCAGGA+TGG | - | tig0040144:17099-17118 | Msa1459240:intron | 30.0% |
| ! | AGAAACCAATTGACTTTGAA+TGG | - | tig0040144:17323-17342 | Msa1459240:intron | 30.0% |
| ATGTACCATTCAAAGTCAAT+TGG | + | tig0040144:17331-17350 | None:intergenic | 30.0% | |
| GTGGACTTCATTCAAAAAAA+AGG | + | tig0040144:17398-17417 | None:intergenic | 30.0% | |
| CAAAGACATTATTCAACAAG+TGG | + | tig0040144:17417-17436 | None:intergenic | 30.0% | |
| TGTTGAATAATGTCTTTGAC+TGG | - | tig0040144:17419-17438 | Msa1459240:intron | 30.0% | |
| TACTGATAGTAATAAGCCAT+TGG | - | tig0040144:17469-17488 | Msa1459240:intron | 30.0% | |
| TGTGGTAATATTACTTCCTT+TGG | + | tig0040144:17620-17639 | None:intergenic | 30.0% | |
| !!! | GTAAAAGGCTTTTTCAACTT+GGG | + | tig0040144:17774-17793 | None:intergenic | 30.0% |
| !!! | AGTAAAAGGCTTTTTCAACT+TGG | + | tig0040144:17775-17794 | None:intergenic | 30.0% |
| ! | CAAATGTTTCTAATTCTCAG+TGG | - | tig0040144:18088-18107 | Msa1459240:intron | 30.0% |
| AACGCACTAAAACTAATACA+TGG | + | tig0040144:18265-18284 | None:intergenic | 30.0% | |
| AGCTAAAGAATAAGTACAAC+AGG | + | tig0040144:18337-18356 | None:intergenic | 30.0% | |
| ! | AATTTGTTTGTGTGTGTGTG+TGG | - | tig0040144:15700-15719 | Msa1459240:three_prime_UTR | 35.0% |
| ATTTGTTTGTGTGTGTGTGT+GGG | - | tig0040144:15701-15720 | Msa1459240:three_prime_UTR | 35.0% | |
| AGAATTACAAGAGGTCAAAC+TGG | + | tig0040144:15847-15866 | None:intergenic | 35.0% | |
| GTCAAACAGGTCATCTAATA+AGG | + | tig0040144:15890-15909 | None:intergenic | 35.0% | |
| GTCAACTAGGTCATGTAATA+TGG | - | tig0040144:16100-16119 | Msa1459240:intron | 35.0% | |
| ATAGCTATAGCTATGGCTTA+AGG | - | tig0040144:16449-16468 | Msa1459240:CDS | 35.0% | |
| ! | CTATGGCTTAAGGATTTGTT+TGG | - | tig0040144:16459-16478 | Msa1459240:CDS | 35.0% |
| ATTTGTTTGGGAATTGGAAG+TGG | - | tig0040144:16472-16491 | Msa1459240:CDS | 35.0% | |
| CTCAAAAAATAAATTGGGGG+AGG | - | tig0040144:16607-16626 | Msa1459240:intron | 35.0% | |
| !!! | TGTTTGAGAGTGTTTTTGGA+GGG | + | tig0040144:16737-16756 | None:intergenic | 35.0% |
| !!! | TTGTTTGAGAGTGTTTTTGG+AGG | + | tig0040144:16738-16757 | None:intergenic | 35.0% |
| AAACACTCTCAAACAAGATG+GGG | - | tig0040144:16742-16761 | Msa1459240:intron | 35.0% | |
| ! | TTAGACTTTGTTTGGGTGTT+AGG | + | tig0040144:16791-16810 | None:intergenic | 35.0% |
| AACACCCAAACAAAGTCTAA+AGG | - | tig0040144:16791-16810 | Msa1459240:intron | 35.0% | |
| ATTAATCACATCGATACAGC+AGG | + | tig0040144:16861-16880 | None:intergenic | 35.0% | |
| !! | GTTGAGTTGGTTATTAGAAC+TGG | - | tig0040144:16895-16914 | Msa1459240:intron | 35.0% |
| TCTAGTTACGACATCAGTAT+AGG | - | tig0040144:16922-16941 | Msa1459240:intron | 35.0% | |
| TAAATATATGCGGAGCTAGA+TGG | + | tig0040144:16997-17016 | None:intergenic | 35.0% | |
| ! | TCTAGCTCCGCATATATTTA+TGG | - | tig0040144:16997-17016 | Msa1459240:intron | 35.0% |
| ACTGGCAAAACAAACAAGAA+AGG | + | tig0040144:17222-17241 | None:intergenic | 35.0% | |
| ATAAACTAGAGTAAGGGAAC+TGG | + | tig0040144:17240-17259 | None:intergenic | 35.0% | |
| ATCAAGCAGAGGATTAAGTT+AGG | + | tig0040144:17355-17374 | None:intergenic | 35.0% | |
| TCTAAATCTGTCTCTACCAA+TGG | + | tig0040144:17488-17507 | None:intergenic | 35.0% | |
| AGATGAAGAAGGAAGAGTAA+AGG | + | tig0040144:17699-17718 | None:intergenic | 35.0% | |
| ATTGTCGCATAAGATGAAGA+AGG | + | tig0040144:17710-17729 | None:intergenic | 35.0% | |
| TTCTTCATCTTATGCGACAA+TGG | - | tig0040144:17709-17728 | Msa1459240:intron | 35.0% | |
| TATCTTAACATGTGCCTTGA+GGG | + | tig0040144:17848-17867 | None:intergenic | 35.0% | |
| CTGCAGCAGCATTTAAAAAA+GGG | + | tig0040144:18002-18021 | None:intergenic | 35.0% | |
| GTGTTCTCTGTGATAATTAC+TGG | + | tig0040144:18048-18067 | None:intergenic | 35.0% | |
| ATACAACTCTACTTCGAACA+AGG | + | tig0040144:18134-18153 | None:intergenic | 35.0% | |
| AATTTGCAGTAGAAAAGTCG+CGG | + | tig0040144:18190-18209 | None:intergenic | 35.0% | |
| AGTTGAATACTGTCAAGTAC+TGG | - | tig0040144:18212-18231 | Msa1459240:CDS | 35.0% | |
| ! | CATGTGTCTAAAGAAAGCAT+AGG | + | tig0040144:18373-18392 | None:intergenic | 35.0% |
| TTTGTTTGTGTGTGTGTGTG+GGG | - | tig0040144:15702-15721 | Msa1459240:three_prime_UTR | 40.0% | |
| AGGTCATCTAATAAGGGACA+GGG | + | tig0040144:15883-15902 | None:intergenic | 40.0% | |
| CTAGGTCATGTAATATGGGA+CGG | - | tig0040144:16105-16124 | Msa1459240:intron | 40.0% | |
| ACTGACACGACATTCAATCT+TGG | + | tig0040144:16171-16190 | None:intergenic | 40.0% | |
| ! | AATTGGAAGTGGAGTGTTTG+AGG | - | tig0040144:16483-16502 | Msa1459240:CDS | 40.0% |
| ! | ATTGGAAGTGGAGTGTTTGA+GGG | - | tig0040144:16484-16503 | Msa1459240:CDS | 40.0% |
| AATAAATCCCCATGGGAAGT+GGG | + | tig0040144:16549-16568 | None:intergenic | 40.0% | |
| AAATAAATCCCCATGGGAAG+TGG | + | tig0040144:16550-16569 | None:intergenic | 40.0% | |
| GGAGGAAAATAAATCCCCAT+GGG | + | tig0040144:16556-16575 | None:intergenic | 40.0% | |
| TGGAGGAAAATAAATCCCCA+TGG | + | tig0040144:16557-16576 | None:intergenic | 40.0% | |
| TTAGGGGGTTTCAATCTTTG+TGG | + | tig0040144:16577-16596 | None:intergenic | 40.0% | |
| !!! | GACTCTGTTAAGGTTTTGGA+AGG | - | tig0040144:16629-16648 | Msa1459240:intron | 40.0% |
| !!! | TTTGAGAGTGTTTTTGGAGG+GGG | + | tig0040144:16735-16754 | None:intergenic | 40.0% |
| !!! | GTTTGAGAGTGTTTTTGGAG+GGG | + | tig0040144:16736-16755 | None:intergenic | 40.0% |
| !! | ATCTTCAGGTTGGTGTCTTA+CGG | + | tig0040144:16838-16857 | None:intergenic | 40.0% |
| AGCAGGTTGTGAAAAATGCT+AGG | + | tig0040144:17029-17048 | None:intergenic | 40.0% | |
| TTCTCGATCACTAGTGTTAC+TGG | - | tig0040144:17280-17299 | Msa1459240:intron | 40.0% | |
| ! | CTAGTGTTACTGGAAGTTAC+AGG | - | tig0040144:17290-17309 | Msa1459240:intron | 40.0% |
| TGTTACTGGAAGTTACAGGA+GGG | - | tig0040144:17294-17313 | Msa1459240:intron | 40.0% | |
| TAGTCTATGCAATCAAGCAG+AGG | + | tig0040144:17366-17385 | None:intergenic | 40.0% | |
| TTTGACTGGATGCAATTGCA+GGG | - | tig0040144:17433-17452 | Msa1459240:intron | 40.0% | |
| ! | CGCACTGTGTTGACAATTAT+AGG | + | tig0040144:17530-17549 | None:intergenic | 40.0% |
| CATCATCAGAGCTCTCTAAT+TGG | + | tig0040144:17595-17614 | None:intergenic | 40.0% | |
| TCATGGACAGATTCATCATG+TGG | + | tig0040144:17638-17657 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | tig0040144:17831-17850 | Msa1459240:intron | 40.0% |
| GTATCTTAACATGTGCCTTG+AGG | + | tig0040144:17849-17868 | None:intergenic | 40.0% | |
| GCGTGCATTCAACTTCTTAA+AGG | - | tig0040144:17896-17915 | Msa1459240:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | tig0040144:17961-17980 | Msa1459240:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | tig0040144:17978-17997 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | tig0040144:17979-17998 | None:intergenic | 40.0% |
| CCTGCAGCAGCATTTAAAAA+AGG | + | tig0040144:18003-18022 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTAAATGCTGCTGC+AGG | - | tig0040144:18000-18019 | Msa1459240:intron | 40.0% |
| TCTAATTCTCAGTGGATGAC+TGG | - | tig0040144:18096-18115 | Msa1459240:intron | 40.0% | |
| ATGTCATCCTTCCTATGCCA+GGG | - | tig0040144:15635-15654 | Msa1459240:three_prime_UTR | 45.0% | |
| AAACTTACCCTGGCATAGGA+AGG | + | tig0040144:15645-15664 | None:intergenic | 45.0% | |
| GATCAAACTTACCCTGGCAT+AGG | + | tig0040144:15649-15668 | None:intergenic | 45.0% | |
| TTGTTTGTGTGTGTGTGTGG+GGG | - | tig0040144:15703-15722 | Msa1459240:three_prime_UTR | 45.0% | |
| CAGGTCATCTAATAAGGGAC+AGG | + | tig0040144:15884-15903 | None:intergenic | 45.0% | |
| GACATTCAATCTTGGCTCCT+TGG | + | tig0040144:16163-16182 | None:intergenic | 45.0% | |
| ! | AGTGGAGTGTTTGAGGGAAA+AGG | - | tig0040144:16490-16509 | Msa1459240:CDS | 45.0% |
| ! | GTGGAGTGTTTGAGGGAAAA+GGG | - | tig0040144:16491-16510 | Msa1459240:CDS | 45.0% |
| TGTTTGAGGGAAAAGGGAGA+AGG | - | tig0040144:16497-16516 | Msa1459240:CDS | 45.0% | |
| AGGGAAAAGGGAGAAGGAAT+TGG | - | tig0040144:16503-16522 | Msa1459240:CDS | 45.0% | |
| GGGAAAAGGGAGAAGGAATT+GGG | - | tig0040144:16504-16523 | Msa1459240:CDS | 45.0% | |
| AAAAGGGAGAAGGAATTGGG+AGG | - | tig0040144:16507-16526 | Msa1459240:CDS | 45.0% | |
| AAAGGGAGAAGGAATTGGGA+GGG | - | tig0040144:16508-16527 | Msa1459240:CDS | 45.0% | |
| ATAAATCCCCATGGGAAGTG+GGG | + | tig0040144:16548-16567 | None:intergenic | 45.0% | |
| ! | GGAGGACTCTGTTAAGGTTT+TGG | - | tig0040144:16625-16644 | Msa1459240:intron | 45.0% |
| ! | CTTTGTTTGGGTGTTAGGAG+AGG | + | tig0040144:16786-16805 | None:intergenic | 45.0% |
| ATACAGCAGGATCTTCAGGT+TGG | + | tig0040144:16848-16867 | None:intergenic | 45.0% | |
| ATCGATACAGCAGGATCTTC+AGG | + | tig0040144:16852-16871 | None:intergenic | 45.0% | |
| ! | AGGATGAGAGGTACAAAGAG+AGG | + | tig0040144:16965-16984 | None:intergenic | 45.0% |
| TGGAGTAACAGAAGGATGAG+AGG | + | tig0040144:16977-16996 | None:intergenic | 45.0% | |
| GAGCTAGATGGAGTAACAGA+AGG | + | tig0040144:16985-17004 | None:intergenic | 45.0% | |
| GATCGAACAATGAGCAAAGC+AGG | + | tig0040144:17046-17065 | None:intergenic | 45.0% | |
| ! | GTGTTACTGGAAGTTACAGG+AGG | - | tig0040144:17293-17312 | Msa1459240:intron | 45.0% |
| CTTTGACTGGATGCAATTGC+AGG | - | tig0040144:17432-17451 | Msa1459240:intron | 45.0% | |
| GCGTGCACTAAATGAGCAAA+AGG | - | tig0040144:17547-17566 | Msa1459240:intron | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | tig0040144:17960-17979 | Msa1459240:intron | 45.0% | |
| !!! | TACATATTAATATTTTTTAA+AGG | - | tig0040144:17806-17825 | Msa1459240:intron | 5.0% |
| GATGTCATCCTTCCTATGCC+AGG | - | tig0040144:15634-15653 | Msa1459240:three_prime_UTR | 50.0% | |
| TGTTTGTGTGTGTGTGTGGG+GGG | - | tig0040144:15704-15723 | Msa1459240:three_prime_UTR | 50.0% | |
| AAGGGAGAAGGAATTGGGAG+GGG | - | tig0040144:16509-16528 | Msa1459240:CDS | 50.0% | |
| AGAAGGAATTGGGAGGGGAA+GGG | - | tig0040144:16514-16533 | Msa1459240:CDS | 50.0% | |
| GGGGGTTTCAATCTTTGTGG+AGG | + | tig0040144:16574-16593 | None:intergenic | 50.0% | |
| ATTGGGGGAGGACTCTGTTA+AGG | - | tig0040144:16619-16638 | Msa1459240:intron | 50.0% | |
| TAGGAGAGGAGGGAATGAGA+GGG | + | tig0040144:16772-16791 | None:intergenic | 50.0% | |
| TTAGGAGAGGAGGGAATGAG+AGG | + | tig0040144:16773-16792 | None:intergenic | 50.0% | |
| GTTTGGGTGTTAGGAGAGGA+GGG | + | tig0040144:16782-16801 | None:intergenic | 50.0% | |
| TGTTTGGGTGTTAGGAGAGG+AGG | + | tig0040144:16783-16802 | None:intergenic | 50.0% | |
| ! | GAGCTCTGATGATGCTCCAA+AGG | - | tig0040144:17601-17620 | Msa1459240:intron | 50.0% |
| AGTCTTGAGAGCTGGAGTCA+TGG | + | tig0040144:17655-17674 | None:intergenic | 50.0% | |
| AGTATGGGAGTCTTGAGAGC+TGG | + | tig0040144:17663-17682 | None:intergenic | 50.0% | |
| !! | GGTCGACTTGAGAGCAGTAT+GGG | + | tig0040144:17678-17697 | None:intergenic | 50.0% |
| !! | AGGTCGACTTGAGAGCAGTA+TGG | + | tig0040144:17679-17698 | None:intergenic | 50.0% |
| GTTTGTGTGTGTGTGTGGGG+GGG | - | tig0040144:15705-15724 | Msa1459240:three_prime_UTR | 55.0% | |
| GAGAAGGAATTGGGAGGGGA+AGG | - | tig0040144:16513-16532 | Msa1459240:CDS | 55.0% | |
| AGGAAAGTCCCCACTTCCCA+TGG | - | tig0040144:16537-16556 | Msa1459240:CDS | 55.0% | |
| GGAAAGTCCCCACTTCCCAT+GGG | - | tig0040144:16538-16557 | Msa1459240:CDS | 55.0% | |
| GAAAGTCCCCACTTCCCATG+GGG | - | tig0040144:16539-16558 | Msa1459240:CDS | 55.0% | |
| !! | GTTTTTGGAGGGGGAGGAGA+GGG | + | tig0040144:16726-16745 | None:intergenic | 55.0% |
| !!! | TGTTTTTGGAGGGGGAGGAG+AGG | + | tig0040144:16727-16746 | None:intergenic | 55.0% |
| !!! | GAGAGTGTTTTTGGAGGGGG+AGG | + | tig0040144:16732-16751 | None:intergenic | 55.0% |
| AGGAGAGGAGGGAATGAGAG+GGG | + | tig0040144:16771-16790 | None:intergenic | 55.0% | |
| AGGAATTGGGAGGGGAAGGG+AGG | - | tig0040144:16517-16536 | Msa1459240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040144 | gene | 15577 | 18451 | 15577 | ID=Msa1459240;Name=Msa1459240 |
| tig0040144 | mRNA | 15577 | 18451 | 15577 | ID=Msa1459240-mRNA-1;Parent=Msa1459240;Name=Msa1459240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.83|1|1|1|6|400|195 |
| tig0040144 | exon | 15577 | 16006 | 15577 | ID=Msa1459240-mRNA-1:exon:22173;Parent=Msa1459240-mRNA-1 |
| tig0040144 | exon | 16265 | 16574 | 16265 | ID=Msa1459240-mRNA-1:exon:22172;Parent=Msa1459240-mRNA-1 |
| tig0040144 | exon | 16684 | 16752 | 16684 | ID=Msa1459240-mRNA-1:exon:22171;Parent=Msa1459240-mRNA-1 |
| tig0040144 | exon | 16874 | 16911 | 16874 | ID=Msa1459240-mRNA-1:exon:22170;Parent=Msa1459240-mRNA-1 |
| tig0040144 | exon | 18192 | 18252 | 18192 | ID=Msa1459240-mRNA-1:exon:22169;Parent=Msa1459240-mRNA-1 |
| tig0040144 | exon | 18372 | 18451 | 18372 | ID=Msa1459240-mRNA-1:exon:22168;Parent=Msa1459240-mRNA-1 |
| tig0040144 | CDS | 18372 | 18451 | 18372 | ID=Msa1459240-mRNA-1:cds;Parent=Msa1459240-mRNA-1 |
| tig0040144 | CDS | 18192 | 18252 | 18192 | ID=Msa1459240-mRNA-1:cds;Parent=Msa1459240-mRNA-1 |
| tig0040144 | CDS | 16874 | 16911 | 16874 | ID=Msa1459240-mRNA-1:cds;Parent=Msa1459240-mRNA-1 |
| tig0040144 | CDS | 16684 | 16752 | 16684 | ID=Msa1459240-mRNA-1:cds;Parent=Msa1459240-mRNA-1 |
| tig0040144 | CDS | 16265 | 16574 | 16265 | ID=Msa1459240-mRNA-1:cds;Parent=Msa1459240-mRNA-1 |
| tig0040144 | CDS | 15977 | 16006 | 15977 | ID=Msa1459240-mRNA-1:cds;Parent=Msa1459240-mRNA-1 |
| tig0040144 | three_prime_UTR | 15577 | 15976 | 15577 | ID=Msa1459240-mRNA-1:three_prime_utr;Parent=Msa1459240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
