AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993600 MtrunA17_Chr6g0476651 95.522 134 6 0 1 134 1 134 2.39e-71 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993600 AT4G10330.1 60.150 133 45 1 2 134 6 130 4.27e-44 141

Find 62 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCAGCAATTTAGGGAAAT+TGG 0.157183 6_4:-66393139 Msa0993600:CDS
TGGAGAGTTGAAATGGTTTA+TGG 0.160315 6_4:-66387437 Msa0993600:three_prime_UTR
GTGTTGAAGTCCAGCAATTT+AGG 0.181008 6_4:-66393147 Msa0993600:CDS
CCGGGCTTACAAGTTGGTTT+TGG 0.194540 6_4:-66388877 Msa0993600:CDS
CTGATTTCAGGAGTGGGTTT+TGG 0.201493 6_4:-66388910 Msa0993600:intron
CCTGGATTCGGTGTTGGTGC+TGG 0.238987 6_4:-66393114 Msa0993600:CDS
TTCAACTCTCCATTTGAATA+TGG 0.245482 6_4:+66387448 None:intergenic
GTTGAAATGGTTTATGGATT+TGG 0.251232 6_4:-66387431 Msa0993600:three_prime_UTR
CCACACGACTCATGAGTATT+TGG 0.283491 6_4:-66393334 None:intergenic
GCTGGATGTGGTGTTGGTTT+AGG 0.284383 6_4:-66388847 Msa0993600:CDS
AACTTGAAATTAAACATATA+TGG 0.286071 6_4:+66387524 None:intergenic
GCTGGGTGTGGCCTCGGTTT+TGG 0.300150 6_4:-66393096 Msa0993600:CDS
TGTTGAAGTCCAGCAATTTA+GGG 0.331725 6_4:-66393146 Msa0993600:CDS
ACATGTCAAAGTTTGATAAA+AGG 0.334054 6_4:+66387601 None:intergenic
TGTGGTGTTGGTTTAGGATT+TGG 0.335566 6_4:-66388841 Msa0993600:CDS
TCCCAATTTCCCTAAATTGC+TGG 0.342293 6_4:+66393137 None:intergenic
CAAAGAGGTGAATTTGAGTA+TGG 0.356167 6_4:-66387563 Msa0993600:three_prime_UTR
TTTGGTGCTGGATGTGGTGT+TGG 0.360496 6_4:-66388853 Msa0993600:CDS
GTTGGTTTAGGATTTGGTTA+TGG 0.373912 6_4:-66388835 Msa0993600:CDS
GTTGGTGCTGGGTGTGGCCT+CGG 0.374475 6_4:-66393102 Msa0993600:CDS
ATTCAAATGGAGAGTTGAAA+TGG 0.380612 6_4:-66387444 Msa0993600:three_prime_UTR
CATGATTTAGTAGAAATTAC+TGG 0.380784 6_4:+66387705 None:intergenic
TTTGGGTTTGGTGCTGGATG+TGG 0.381909 6_4:-66388859 Msa0993600:CDS
GGGAAATTGGGACCTGGATT+CGG 0.385011 6_4:-66393126 Msa0993600:CDS
TCCAGCAATTTAGGGAAATT+GGG 0.406429 6_4:-66393138 Msa0993600:CDS
TTCGGTGTTGGTGCTGGGTG+TGG 0.435372 6_4:-66393108 Msa0993600:CDS
ATTTGGTTATGGTGTGGGCA+AGG 0.435786 6_4:-66388824 Msa0993600:CDS
CTGGATTCGGTGTTGGTGCT+GGG 0.438800 6_4:-66393113 Msa0993600:CDS
TTAGGATTTGGTTATGGTGT+GGG 0.440901 6_4:-66388829 Msa0993600:CDS
TTTGGTTATGGTGTGGGCAA+GGG 0.471968 6_4:-66388823 Msa0993600:CDS
TTGCACAAGATGAGTATAGA+AGG 0.474591 6_4:-66388798 Msa0993600:CDS
TTTCTTGTTTGATATTTGAT+GGG 0.481162 6_4:+66393296 None:intergenic
CCTCTTTGATTTCTTGAACA+AGG 0.494132 6_4:+66387578 None:intergenic
TTTGGTATCGGTCTTCTTGG+AGG 0.496538 6_4:-66393078 Msa0993600:intron
TATAGAAGGTACTCAAATGT+TGG 0.502106 6_4:-66388784 Msa0993600:CDS
ATTGAAAGAAAGATGAGAAA+CGG 0.505163 6_4:-66393204 Msa0993600:exon
AAATTAAACATATATGGCAG+TGG 0.526054 6_4:+66387530 None:intergenic
TTTAGGATTTGGTTATGGTG+TGG 0.528041 6_4:-66388830 Msa0993600:CDS
CCAAAACCAACTTGTAAGCC+CGG 0.530435 6_4:+66388877 None:intergenic
GAGAAACGGTGACGATGAGA+AGG 0.530951 6_4:-66393190 Msa0993600:CDS
CCAGCACCAACACCGAATCC+AGG 0.542046 6_4:+66393114 None:intergenic
AAATTGCTGGACTTCAACAC+TGG 0.544171 6_4:+66393150 None:intergenic
TTGGGACCTGGATTCGGTGT+TGG 0.544772 6_4:-66393120 Msa0993600:CDS
GGAATTCCGGGCTTACAAGT+TGG 0.545758 6_4:-66388883 Msa0993600:CDS
ATGCTTCCAGAACCACGAAA+AGG 0.551606 6_4:+66388757 None:intergenic
TGTGGTGTGCCATATTCAAA+TGG 0.556258 6_4:-66387457 Msa0993600:three_prime_UTR
TCGACAAGTGGAGAAGATGA+TGG 0.558424 6_4:-66387778 Msa0993600:exon
TTCTTGTTTGATATTTGATG+GGG 0.561013 6_4:+66393297 None:intergenic
GGATGAGATTACTGCACTTG+TGG 0.583404 6_4:-66387852 Msa0993600:CDS
ATATATGTTTAATTTCAAGT+TGG 0.585208 6_4:-66387522 Msa0993600:three_prime_UTR
GTAATTTCTACTAAATCATG+TGG 0.630561 6_4:-66387702 Msa0993600:three_prime_UTR
CTTGTAAGCCCGGAATTCCA+GGG 0.631338 6_4:+66388887 None:intergenic
CATCAAGAGAAATCGACAAG+TGG 0.633315 6_4:-66387790 Msa0993600:CDS
ATTTCTACTAAATCATGTGG+TGG 0.633976 6_4:-66387699 Msa0993600:three_prime_UTR
TGAATATGGCACACCACACA+TGG 0.641597 6_4:+66387462 None:intergenic
AATTTAGGGAAATTGGGACC+TGG 0.652123 6_4:-66393132 Msa0993600:CDS
AGAAACGGTGACGATGAGAA+GGG 0.657776 6_4:-66393189 Msa0993600:CDS
CCTTGTTCAAGAAATCAAAG+AGG 0.669283 6_4:-66387578 Msa0993600:three_prime_UTR
GAAGACCGATACCAAAACCG+AGG 0.677888 6_4:+66393085 None:intergenic
ACGATGAGAAGGGTTTGCTG+TGG 0.697290 6_4:-66393179 Msa0993600:CDS
TATCTTGAAAAGACCATGTG+TGG 0.700970 6_4:-66387475 Msa0993600:three_prime_UTR
CTCATGAGTATTTGGCACTG+TGG 0.708973 6_4:-66393326 Msa0993600:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTCTTAACAAAA+GGG + chr6_4:66389353-66389372 None:intergenic 10.0%
!!! AATTAAATTTTCTTAACAAA+AGG + chr6_4:66389354-66389373 None:intergenic 10.0%
!! AAGAAAAAATTTCATAAAAA+GGG + chr6_4:66389430-66389449 None:intergenic 10.0%
!!! AAAAACATTGATAATTTTTT+AGG - chr6_4:66393093-66393112 Msa0993600:CDS 10.0%
!!! ATAAAACTTTTCTAACAAAA+GGG + chr6_4:66387714-66387733 None:intergenic 15.0%
!!! AATAAAACTTTTCTAACAAA+AGG + chr6_4:66387715-66387734 None:intergenic 15.0%
!! TAATTAATTCTAGTGATAAA+TGG - chr6_4:66387748-66387767 Msa0993600:three_prime_UTR 15.0%
!!! TCATTTTCTTAAATTACTAA+TGG + chr6_4:66387881-66387900 None:intergenic 15.0%
!!! TCATTTTCTTAAATTACTAA+GGG + chr6_4:66387881-66387900 None:intergenic 15.0%
!! ATTTATTGTTTGATTATAGT+TGG - chr6_4:66388894-66388913 Msa0993600:CDS 15.0%
!!! TCATTTTGTTAAATTACTAA+TGG + chr6_4:66389088-66389107 None:intergenic 15.0%
!!! TCATTTTGTTAAATTACTAA+TGG + chr6_4:66389088-66389107 None:intergenic 15.0%
!! AGAAAAAATTTCATAAAAAG+GGG + chr6_4:66389429-66389448 None:intergenic 15.0%
!! CAAGAAAAAATTTCATAAAA+AGG + chr6_4:66389431-66389450 None:intergenic 15.0%
!!! TTATGAAATTTTTTCTTGTT+TGG - chr6_4:66389433-66389452 Msa0993600:intron 15.0%
!!! AGAAAAATTTTCTTACAAAA+GGG + chr6_4:66389631-66389650 None:intergenic 15.0%
!!! AAGAAAAATTTTCTTACAAA+AGG + chr6_4:66389632-66389651 None:intergenic 15.0%
!! TGAAAAAAATTCATAGAAAA+GGG + chr6_4:66389780-66389799 None:intergenic 15.0%
!! ATGAAAAAAATTCATAGAAA+AGG + chr6_4:66389781-66389800 None:intergenic 15.0%
!!! AGAAAACTTTTTTAACAAAA+GGG + chr6_4:66389855-66389874 None:intergenic 15.0%
!!! AAGAAAACTTTTTTAACAAA+AGG + chr6_4:66389856-66389875 None:intergenic 15.0%
!! AGTAAAAAAGATAAATGATT+TGG - chr6_4:66389928-66389947 Msa0993600:intron 15.0%
!!! TTAATTATTGATTTATTGAG+AGG - chr6_4:66389989-66390008 Msa0993600:intron 15.0%
!!! TAATTATTGATTTATTGAGA+GGG - chr6_4:66389990-66390009 Msa0993600:intron 15.0%
!!! GAGATAATTATTTTTTATTG+AGG - chr6_4:66390750-66390769 Msa0993600:intron 15.0%
!! AATGATACTATTATTAACTA+CGG + chr6_4:66391146-66391165 None:intergenic 15.0%
!! AAAAAATAAAAATGTTCCAT+AGG - chr6_4:66392406-66392425 Msa0993600:intron 15.0%
!! AAAAATAAAAATGTTCCATA+GGG - chr6_4:66392407-66392426 Msa0993600:intron 15.0%
!!! TAGAAACATTACAATTATTT+TGG - chr6_4:66392479-66392498 Msa0993600:intron 15.0%
!! AATTAATGTTAAAAATGAGT+TGG + chr6_4:66392824-66392843 None:intergenic 15.0%
!! ATTGTACATGAAAAAATAAA+TGG + chr6_4:66392973-66392992 None:intergenic 15.0%
!! AACTTGAAATTAAACATATA+TGG + chr6_4:66393198-66393217 None:intergenic 15.0%
!!! ATATATGTTTAATTTCAAGT+TGG - chr6_4:66393197-66393216 Msa0993600:exon 15.0%
!!! TTTCTTGTTTGATATTTGAT+GGG + chr6_4:66387426-66387445 None:intergenic 20.0%
!!! TTTTCTTGTTTGATATTTGA+TGG + chr6_4:66387427-66387446 None:intergenic 20.0%
!!! ATTTCTCTGTTTGTTTTTTA+AGG + chr6_4:66387497-66387516 None:intergenic 20.0%
!!! AGAAAACTTTTCATACAAAA+GGG + chr6_4:66388150-66388169 None:intergenic 20.0%
!!! AAGAAAACTTTTCATACAAA+AGG + chr6_4:66388151-66388170 None:intergenic 20.0%
!!! GTCATTTTCTTAAATTACTA+AGG + chr6_4:66388357-66388376 None:intergenic 20.0%
!!! TGAAAACTTTTCTTACAAAA+GGG + chr6_4:66388544-66388563 None:intergenic 20.0%
!!! ATGAAAACTTTTCTTACAAA+AGG + chr6_4:66388545-66388564 None:intergenic 20.0%
!!! TGAAAGTTTCAATTTTTCAA+TGG - chr6_4:66388594-66388613 Msa0993600:intron 20.0%
!!! CAATAAAACTTTTCTAACAA+CGG + chr6_4:66387716-66387735 None:intergenic 20.0%
!!! TTTTATTGTGTGATTATAGT+TGG - chr6_4:66388814-66388833 Msa0993600:CDS 20.0%
!!! AATAAACTTTTCTGACAAAA+AGG + chr6_4:66388877-66388896 None:intergenic 20.0%
!!! ATCAAACTTTTCTTACAAAA+GGG + chr6_4:66388952-66388971 None:intergenic 20.0%
!!! AATCAAACTTTTCTTACAAA+AGG + chr6_4:66388953-66388972 None:intergenic 20.0%
!! GTAAGAAAAGTTTGATTATT+TGG - chr6_4:66388956-66388975 Msa0993600:intron 20.0%
!! AAGAAAAATTTCTAACAGAA+TGG + chr6_4:66389505-66389524 None:intergenic 20.0%
!! ATTTAAGCATATGAAGATTA+GGG + chr6_4:66390053-66390072 None:intergenic 20.0%
!! TATTTAAGCATATGAAGATT+AGG + chr6_4:66390054-66390073 None:intergenic 20.0%
!! AATCTTCATATGCTTAAATA+TGG - chr6_4:66390054-66390073 Msa0993600:intron 20.0%
!!! TAAATCAGTGTTATTAAATG+TGG + chr6_4:66390253-66390272 None:intergenic 20.0%
!!! TAATAACACTGATTTAGATT+CGG - chr6_4:66390257-66390276 Msa0993600:intron 20.0%
!!! TTTAGTGATATTTTCTGTTT+TGG + chr6_4:66391409-66391428 None:intergenic 20.0%
!!! AATTAGTTCATAGATTTTGA+AGG - chr6_4:66391534-66391553 Msa0993600:intron 20.0%
!!! AAAGGCATAAAAATAAGAAA+AGG + chr6_4:66392013-66392032 None:intergenic 20.0%
!! AGCTTATTTACATTAAGAAA+AGG + chr6_4:66392031-66392050 None:intergenic 20.0%
!! TTAATGTAAATAAGCTCATT+TGG - chr6_4:66392035-66392054 Msa0993600:intron 20.0%
!!! AACCTTTCTATTTTATTTGT+TGG - chr6_4:66392070-66392089 Msa0993600:intron 20.0%
!! AAAATAAAAATGTTCCATAG+GGG - chr6_4:66392408-66392427 Msa0993600:intron 20.0%
!!! ATCTCATGATTTTATGTAAT+TGG - chr6_4:66392650-66392669 Msa0993600:intron 20.0%
!! AAATACTAAAAAGCTTATCA+AGG - chr6_4:66392903-66392922 Msa0993600:intron 20.0%
!! TTCTTGTTTGATATTTGATG+GGG + chr6_4:66387425-66387444 None:intergenic 25.0%
!! AAGAAAACTTTTCTCACAAA+AGG - chr6_4:66387440-66387459 Msa0993600:three_prime_UTR 25.0%
!! AGAAAACTTTTCTCACAAAA+GGG - chr6_4:66387441-66387460 Msa0993600:three_prime_UTR 25.0%
! ATTGAAAGAAAGATGAGAAA+CGG - chr6_4:66387515-66387534 Msa0993600:three_prime_UTR 25.0%
! AATTGAATGTAATCACAAGT+CGG - chr6_4:66387904-66387923 Msa0993600:intron 25.0%
!! ACATGTTTCTTGTTTGATTA+TGG - chr6_4:66387985-66388004 Msa0993600:intron 25.0%
! TTTATTCTAGTAATCAACCA+AGG - chr6_4:66388107-66388126 Msa0993600:intron 25.0%
! TCATTTAAAAGTTGAAACCT+TGG + chr6_4:66388127-66388146 None:intergenic 25.0%
!! ATAGTTGATTCTAGTAATCA+AGG - chr6_4:66388179-66388198 Msa0993600:intron 25.0%
!! GTAAGAAAAGTTTTCATGTT+TGG - chr6_4:66388548-66388567 Msa0993600:intron 25.0%
!! CCATTTTCTTGAATTACTAA+TGG + chr6_4:66388689-66388708 None:intergenic 25.0%
! CCATTAGTAATTCAAGAAAA+TGG - chr6_4:66388686-66388705 Msa0993600:intron 25.0%
!!! TCAATTTTTCAATGACTCTT+TGG - chr6_4:66389010-66389029 Msa0993600:intron 25.0%
! TAATTCTAGTAATCAGCTAA+CGG - chr6_4:66389463-66389482 Msa0993600:intron 25.0%
!! AATCAAACTTTTCGAACAAA+GGG + chr6_4:66389708-66389727 None:intergenic 25.0%
!! AAATCAAACTTTTCGAACAA+AGG + chr6_4:66389709-66389728 None:intergenic 25.0%
! AGAATTCCATTAATCAACAA+AGG - chr6_4:66389737-66389756 Msa0993600:intron 25.0%
!! TTGAAACCTTTGTTGATTAA+TGG + chr6_4:66389746-66389765 None:intergenic 25.0%
!!! TTATGTAGTCTTTGTTTTGT+TGG - chr6_4:66389902-66389921 Msa0993600:intron 25.0%
!!! AATAACACTGATTTAGATTC+GGG - chr6_4:66390258-66390277 Msa0993600:intron 25.0%
! AAAAACACAAAGTCAAAACA+TGG + chr6_4:66390336-66390355 None:intergenic 25.0%
!!! TTTTGACTTTGTGTTTTTGA+TGG - chr6_4:66390338-66390357 Msa0993600:intron 25.0%
!!! TTTGACTTTGTGTTTTTGAT+GGG - chr6_4:66390339-66390358 Msa0993600:intron 25.0%
!! GCATTTTTATTGCTTGAATA+TGG - chr6_4:66390486-66390505 Msa0993600:intron 25.0%
!!! TTGATAGTTCCTTTTAGATT+AGG - chr6_4:66390525-66390544 Msa0993600:intron 25.0%
!!! TTTAACTGGTTTTGAAAAGT+TGG - chr6_4:66390631-66390650 Msa0993600:intron 25.0%
! AAATAATTATCTCCCAATTC+CGG + chr6_4:66390743-66390762 None:intergenic 25.0%
! TTATTGAGGAATTGATCAAT+AGG - chr6_4:66390764-66390783 Msa0993600:intron 25.0%
!! AACTTTCGTAAGGATATTTT+TGG - chr6_4:66390947-66390966 Msa0993600:intron 25.0%
!!! TGACTTTCTTTTGTTTAAGA+CGG + chr6_4:66391011-66391030 None:intergenic 25.0%
!! AACAAAAGAAAGTCATCTTT+TGG - chr6_4:66391016-66391035 Msa0993600:intron 25.0%
!! GTTGAATCTTAAATCAGTTT+TGG - chr6_4:66391219-66391238 Msa0993600:intron 25.0%
! CAAAAAAAAAAACCCCTAAA+AGG + chr6_4:66391364-66391383 None:intergenic 25.0%
! TCTATGAACTAATTAACCAA+AGG + chr6_4:66391528-66391547 None:intergenic 25.0%
! TACAAAATATCCATAGAGAT+AGG + chr6_4:66391750-66391769 None:intergenic 25.0%
!! CAAAATACTTTTCTGATTTC+AGG - chr6_4:66391797-66391816 Msa0993600:intron 25.0%
! GACCAACAAATAAAATAGAA+AGG + chr6_4:66392075-66392094 None:intergenic 25.0%
! CTCAAATAAGTTAATCCAAA+CGG - chr6_4:66392296-66392315 Msa0993600:intron 25.0%
! TCAAATAAGTTAATCCAAAC+GGG - chr6_4:66392297-66392316 Msa0993600:intron 25.0%
!!! AAATTTTAATGTATTCGTCG+TGG - chr6_4:66392599-66392618 Msa0993600:intron 25.0%
! TCTAATTTACAAAATCCGTA+TGG + chr6_4:66392689-66392708 None:intergenic 25.0%
!!! TAACATGTTGTGTTATTTTC+AGG - chr6_4:66392845-66392864 Msa0993600:intron 25.0%
!!! AACATGTTGTGTTATTTTCA+GGG - chr6_4:66392846-66392865 Msa0993600:intron 25.0%
! CATGATTTAGTAGAAATTAC+TGG + chr6_4:66393017-66393036 None:intergenic 25.0%
! GTAATTTCTACTAAATCATG+TGG - chr6_4:66393017-66393036 Msa0993600:intron 25.0%
! ACATGTCAAAGTTTGATAAA+AGG + chr6_4:66393121-66393140 None:intergenic 25.0%
! AAATTAAACATATATGGCAG+TGG + chr6_4:66393192-66393211 None:intergenic 25.0%
! AGAAAACTTTTCTCACAACA+GGG + chr6_4:66387795-66387814 None:intergenic 30.0%
! AAGAAAACTTTTCTCACAAC+AGG + chr6_4:66387796-66387815 None:intergenic 30.0%
!! CACACTTTTTATAGAAGTGT+CGG - chr6_4:66387945-66387964 Msa0993600:intron 30.0%
GCATTAGAGTAATCAACTAA+AGG - chr6_4:66388009-66388028 Msa0993600:intron 30.0%
! TTTTTGAATGACCCTTTTGT+TGG - chr6_4:66388037-66388056 Msa0993600:intron 30.0%
GAAACTTCACTTCTAATCAA+AGG + chr6_4:66388074-66388093 None:intergenic 30.0%
TGCTTCATAGTCTAACAAAA+GGG + chr6_4:66388290-66388309 None:intergenic 30.0%
TTGAATGCAATCACAAATGT+TGG - chr6_4:66388381-66388400 Msa0993600:intron 30.0%
! TGTTTGATTATAGTTGGTTC+TGG - chr6_4:66388900-66388919 Msa0993600:CDS 30.0%
CCATCGAAAAATTGAAACTT+TGG + chr6_4:66388929-66388948 None:intergenic 30.0%
!! CCAAAGTTTCAATTTTTCGA+TGG - chr6_4:66388926-66388945 Msa0993600:intron 30.0%
TTGAATGTAATCACAAGTGT+CGG - chr6_4:66388714-66388733 Msa0993600:intron 30.0%
! ATCAAACTTTTCGAACAAAG+GGG + chr6_4:66389707-66389726 None:intergenic 30.0%
!! TTATTGATTTATTGAGAGGG+TGG - chr6_4:66389993-66390012 Msa0993600:intron 30.0%
TCATATGCTTAAATATGGCA+TGG - chr6_4:66390059-66390078 Msa0993600:intron 30.0%
AGATCAGTGTTGTCAAATAT+CGG - chr6_4:66390116-66390135 Msa0993600:intron 30.0%
GTAAGTCATATAATCATGTG+TGG - chr6_4:66390280-66390299 Msa0993600:intron 30.0%
ATATAATCATGTGTGGATCT+GGG - chr6_4:66390287-66390306 Msa0993600:intron 30.0%
!! TTGACTTTGTGTTTTTGATG+GGG - chr6_4:66390340-66390359 Msa0993600:intron 30.0%
ATTAAGAACGACTGAAATTC+CGG + chr6_4:66390375-66390394 None:intergenic 30.0%
GAATTTCAGTCGTTCTTAAT+TGG - chr6_4:66390375-66390394 Msa0993600:intron 30.0%
TTTATTGCTTGAATATGGCA+TGG - chr6_4:66390491-66390510 Msa0993600:intron 30.0%
!!! GTTTTGACTCTGTTTTTAAC+TGG - chr6_4:66390617-66390636 Msa0993600:intron 30.0%
!! TTTTGAAAAGTTGGATTGTG+AGG - chr6_4:66390640-66390659 Msa0993600:intron 30.0%
! AATAGGCAGTTATACCATTT+TGG - chr6_4:66390781-66390800 Msa0993600:intron 30.0%
! ATAGGCAGTTATACCATTTT+GGG - chr6_4:66390782-66390801 Msa0993600:intron 30.0%
GACACATATACACTATTTCA+AGG + chr6_4:66390861-66390880 None:intergenic 30.0%
!! AATCTATGTTAGTCTTTGCT+TGG - chr6_4:66390973-66390992 Msa0993600:intron 30.0%
GCATCACAATTCAAAATTGA+TGG + chr6_4:66391616-66391635 None:intergenic 30.0%
TAAACAGTATCCTATCTCTA+TGG - chr6_4:66391737-66391756 Msa0993600:intron 30.0%
!! TATAGAAGGTACTCAAATGT+TGG - chr6_4:66391935-66391954 Msa0993600:intron 30.0%
GCATAAAAATAAGAAAAGGC+AGG + chr6_4:66392009-66392028 None:intergenic 30.0%
TTTATCCAAACAGCGAAAAT+CGG + chr6_4:66392100-66392119 None:intergenic 30.0%
ACTAAAGTCACAAACTATCT+TGG - chr6_4:66392179-66392198 Msa0993600:intron 30.0%
TAAGTACTTGTGAGACAATT+TGG + chr6_4:66392256-66392275 None:intergenic 30.0%
TTTCATCTCTTGTGCATTAA+GGG + chr6_4:66392323-66392342 None:intergenic 30.0%
CTTCAAATTCACATTCACAT+AGG + chr6_4:66392373-66392392 None:intergenic 30.0%
ATTAGAAAGCTAGAAACAGT+TGG - chr6_4:66392703-66392722 Msa0993600:intron 30.0%
TAGCTACAGATATATCTGTA+GGG + chr6_4:66392777-66392796 None:intergenic 30.0%
ATAGCTACAGATATATCTGT+AGG + chr6_4:66392778-66392797 None:intergenic 30.0%
ATTTCTACTAAATCATGTGG+TGG - chr6_4:66393020-66393039 Msa0993600:intron 30.0%
!! TGGTCTTTTCAAGATAGTAT+CGG + chr6_4:66393240-66393259 None:intergenic 30.0%
TTCAACTCTCCATTTGAATA+TGG + chr6_4:66393274-66393293 None:intergenic 30.0%
ATTCAAATGGAGAGTTGAAA+TGG - chr6_4:66393275-66393294 Msa0993600:five_prime_UTR 30.0%
GTTGAAATGGTTTATGGATT+TGG - chr6_4:66393288-66393307 Msa0993600:five_prime_UTR 30.0%
TGTTGAAGTCCAGCAATTTA+GGG - chr6_4:66387573-66387592 Msa0993600:three_prime_UTR 35.0%
TCCAGCAATTTAGGGAAATT+GGG - chr6_4:66387581-66387600 Msa0993600:three_prime_UTR 35.0%
GTGCTTCATAGTCTAACAAA+AGG + chr6_4:66388291-66388310 None:intergenic 35.0%
AATGCAATCACAAATGTTGG+TGG - chr6_4:66388384-66388403 Msa0993600:intron 35.0%
TGCTTCGTAGTCTAACAAAA+GGG + chr6_4:66388620-66388639 None:intergenic 35.0%
! TACTAATGGTGTCAACATGT+CGG + chr6_4:66387867-66387886 None:intergenic 35.0%
!!! TGGATTTTTTGAAACTGCCA+TGG - chr6_4:66390158-66390177 Msa0993600:intron 35.0%
CAACATAAAAGTTATGACGC+TGG + chr6_4:66390201-66390220 None:intergenic 35.0%
! CAGCGTCATAACTTTTATGT+TGG - chr6_4:66390199-66390218 Msa0993600:intron 35.0%
TAAATGTGGATGACAGACAA+TGG + chr6_4:66390239-66390258 None:intergenic 35.0%
CATATAATCATGTGTGGATC+TGG - chr6_4:66390286-66390305 Msa0993600:intron 35.0%
!!! GCAGTTCGATTTTGATTTGA+AGG - chr6_4:66390309-66390328 Msa0993600:intron 35.0%
ATTATGTGACTGTGTGAATG+TGG - chr6_4:66390407-66390426 Msa0993600:intron 35.0%
TTATGTGACTGTGTGAATGT+GGG - chr6_4:66390408-66390427 Msa0993600:intron 35.0%
TGTGGAATCTTAATCCATCA+GGG + chr6_4:66390438-66390457 None:intergenic 35.0%
! AGTTCCTTTTAGATTAGGAG+AGG - chr6_4:66390530-66390549 Msa0993600:intron 35.0%
! GTTCCTTTTAGATTAGGAGA+GGG - chr6_4:66390531-66390550 Msa0993600:intron 35.0%
! TTCCTTTTAGATTAGGAGAG+GGG - chr6_4:66390532-66390551 Msa0993600:intron 35.0%
AATCACTCTGTTGAGGATTT+AGG - chr6_4:66390591-66390610 Msa0993600:intron 35.0%
ATCACTCTGTTGAGGATTTA+GGG - chr6_4:66390592-66390611 Msa0993600:intron 35.0%
TTCGTTCATTCAGCCAATTA+AGG + chr6_4:66390669-66390688 None:intergenic 35.0%
! TAGGCAGTTATACCATTTTG+GGG - chr6_4:66390783-66390802 Msa0993600:intron 35.0%
!! TTATACCATTTTGGGGGTAA+TGG - chr6_4:66390790-66390809 Msa0993600:intron 35.0%
!! TATACCATTTTGGGGGTAAT+GGG - chr6_4:66390791-66390810 Msa0993600:intron 35.0%
!!! AGTTTTGATTGTGAGTTTGC+TGG - chr6_4:66390817-66390836 Msa0993600:intron 35.0%
!!! TGTGAGTTTGCTGGTTTTAT+TGG - chr6_4:66390826-66390845 Msa0993600:intron 35.0%
GTTTGAAGGTTCTTAAGTGT+TGG - chr6_4:66390895-66390914 Msa0993600:intron 35.0%
GTAATGTGAGAACTTTCGTA+AGG - chr6_4:66390937-66390956 Msa0993600:intron 35.0%
!! TCATCTTTTGGAAGCCTTTT+CGG - chr6_4:66391028-66391047 Msa0993600:intron 35.0%
GTACAGAAGATTATCCGAAA+AGG + chr6_4:66391045-66391064 None:intergenic 35.0%
TCAATTTGCATCAAAGTGAG+AGG - chr6_4:66391177-66391196 Msa0993600:intron 35.0%
!!! TCAGTTTTGGACTTGAATCA+TGG - chr6_4:66391232-66391251 Msa0993600:intron 35.0%
!!! CAGTTTTGGACTTGAATCAT+GGG - chr6_4:66391233-66391252 Msa0993600:intron 35.0%
!!! TAAAAGGCCTTTTTGAAACC+GGG + chr6_4:66391348-66391367 None:intergenic 35.0%
!!! CTAAAAGGCCTTTTTGAAAC+CGG + chr6_4:66391349-66391368 None:intergenic 35.0%
! GGTTTCAAAAAGGCCTTTTA+GGG - chr6_4:66391348-66391367 Msa0993600:intron 35.0%
! GTTTCAAAAAGGCCTTTTAG+GGG - chr6_4:66391349-66391368 Msa0993600:intron 35.0%
TGATTCATAGCAGACTTGTA+TGG + chr6_4:66391437-66391456 None:intergenic 35.0%
! TACTTTTCTGATTTCAGGAG+TGG - chr6_4:66391802-66391821 Msa0993600:intron 35.0%
! ACTTTTCTGATTTCAGGAGT+GGG - chr6_4:66391803-66391822 Msa0993600:intron 35.0%
!!! TTACAAGTTGGTTTTGGGTT+TGG - chr6_4:66391848-66391867 Msa0993600:intron 35.0%
! GTTGGTTTAGGATTTGGTTA+TGG - chr6_4:66391884-66391903 Msa0993600:intron 35.0%
! TTTAGGATTTGGTTATGGTG+TGG - chr6_4:66391889-66391908 Msa0993600:intron 35.0%
! TTAGGATTTGGTTATGGTGT+GGG - chr6_4:66391890-66391909 Msa0993600:intron 35.0%
TTGCACAAGATGAGTATAGA+AGG - chr6_4:66391921-66391940 Msa0993600:intron 35.0%
! AATGTTGGAAATCCTTTTCG+TGG - chr6_4:66391950-66391969 Msa0993600:intron 35.0%
CTTTCATCTCTTGTGCATTA+AGG + chr6_4:66392324-66392343 None:intergenic 35.0%
! CCTCTTTGATTTCTTGAACA+AGG + chr6_4:66393144-66393163 None:intergenic 35.0%
CCTTGTTCAAGAAATCAAAG+AGG - chr6_4:66393141-66393160 Msa0993600:CDS 35.0%
CAAAGAGGTGAATTTGAGTA+TGG - chr6_4:66393156-66393175 Msa0993600:CDS 35.0%
TATCTTGAAAAGACCATGTG+TGG - chr6_4:66393244-66393263 Msa0993600:five_prime_UTR 35.0%
TGGAGAGTTGAAATGGTTTA+TGG - chr6_4:66393282-66393301 Msa0993600:five_prime_UTR 35.0%
! CTTCGACATTTTTCTAACTC+AGG + chr6_4:66393314-66393333 None:intergenic 35.0%
AAATTGCTGGACTTCAACAC+TGG + chr6_4:66387572-66387591 None:intergenic 40.0%
GTGTTGAAGTCCAGCAATTT+AGG - chr6_4:66387572-66387591 Msa0993600:three_prime_UTR 40.0%
GTCCAGCAATTTAGGGAAAT+TGG - chr6_4:66387580-66387599 Msa0993600:three_prime_UTR 40.0%
TCCCAATTTCCCTAAATTGC+TGG + chr6_4:66387585-66387604 None:intergenic 40.0%
AATTTAGGGAAATTGGGACC+TGG - chr6_4:66387587-66387606 Msa0993600:three_prime_UTR 40.0%
! AATGACCCTTTTGTTGGACA+TGG - chr6_4:66388043-66388062 Msa0993600:intron 40.0%
GTGCTTCGTAGTCTAACAAA+AGG + chr6_4:66388621-66388640 None:intergenic 40.0%
ACAAGTGTCAGTGTTAGACA+CGG - chr6_4:66388726-66388745 Msa0993600:intron 40.0%
TGTTAGACACGGAAACATGT+TGG - chr6_4:66388737-66388756 Msa0993600:intron 40.0%
TTCTAACAACGGTTAAGCGT+CGG + chr6_4:66388791-66388810 None:intergenic 40.0%
! ACACCTTTGATCAGAAGTGT+CGG - chr6_4:66389246-66389265 Msa0993600:intron 40.0%
! TTTTCGAACAAAGGGGTCAT+TGG + chr6_4:66389700-66389719 None:intergenic 40.0%
TTATTGAGAGGGTGGTATTG+TGG - chr6_4:66390001-66390020 Msa0993600:intron 40.0%
AATACTTCACGAATTGGCCA+TGG + chr6_4:66390178-66390197 None:intergenic 40.0%
TTTGATGGGGTTTGAAAAGC+CGG - chr6_4:66390353-66390372 Msa0993600:intron 40.0%
GTCGTTCTTAATTGGACGAA+TGG - chr6_4:66390383-66390402 Msa0993600:intron 40.0%
TATGTGACTGTGTGAATGTG+GGG - chr6_4:66390409-66390428 Msa0993600:intron 40.0%
GTGTGGAATCTTAATCCATC+AGG + chr6_4:66390439-66390458 None:intergenic 40.0%
TGCTTCGCACATTTAATGTG+TGG + chr6_4:66390456-66390475 None:intergenic 40.0%
! TCCTTTTAGATTAGGAGAGG+GGG - chr6_4:66390533-66390552 Msa0993600:intron 40.0%
TTAGGAGAGGGGGTAAAATT+TGG - chr6_4:66390543-66390562 Msa0993600:intron 40.0%
TAGGAGAGGGGGTAAAATTT+GGG - chr6_4:66390544-66390563 Msa0993600:intron 40.0%
GATTGTGAGGCTTCCTTAAT+TGG - chr6_4:66390653-66390672 Msa0993600:intron 40.0%
ATCACATGACAACGTGAATG+TGG - chr6_4:66390689-66390708 Msa0993600:intron 40.0%
TCACATGACAACGTGAATGT+GGG - chr6_4:66390690-66390709 Msa0993600:intron 40.0%
ACCTGGATTCTCTATTGTCA+GGG + chr6_4:66390720-66390739 None:intergenic 40.0%
! AGGCAGTTATACCATTTTGG+GGG - chr6_4:66390784-66390803 Msa0993600:intron 40.0%
AGAACCTTCAAACCACAACA+AGG + chr6_4:66390888-66390907 None:intergenic 40.0%
! CGGTTTCAAAAAGGCCTTTT+AGG - chr6_4:66391347-66391366 Msa0993600:intron 40.0%
CAAGTCTGCTATGAATCAAC+AGG - chr6_4:66391439-66391458 Msa0993600:intron 40.0%
TATGAATCAACAGGCCAACA+AGG - chr6_4:66391448-66391467 Msa0993600:intron 40.0%
ACACATTCTAACGTAGTGCA+AGG + chr6_4:66391662-66391681 None:intergenic 40.0%
!! TGTGGTGTTGGTTTAGGATT+TGG - chr6_4:66391878-66391897 Msa0993600:intron 40.0%
AAACTATCTTGGCGAGCTTA+TGG - chr6_4:66392190-66392209 Msa0993600:intron 40.0%
ATATCCATTGAGCAGTTGGT+TGG + chr6_4:66392506-66392525 None:intergenic 40.0%
AACCAACTGCTCAATGGATA+TGG - chr6_4:66392505-66392524 Msa0993600:intron 40.0%
AACCATATCCATTGAGCAGT+TGG + chr6_4:66392510-66392529 None:intergenic 40.0%
ACAGATATATCTGTAGGGTC+TGG + chr6_4:66392772-66392791 None:intergenic 40.0%
CATCAAGAGAAATCGACAAG+TGG - chr6_4:66392929-66392948 Msa0993600:intron 40.0%
TGTGGTGTGCCATATTCAAA+TGG - chr6_4:66393262-66393281 Msa0993600:five_prime_UTR 40.0%
CTCATGAGTATTTGGCACTG+TGG - chr6_4:66387393-66387412 Msa0993600:three_prime_UTR 45.0%
AGAAACGGTGACGATGAGAA+GGG - chr6_4:66387530-66387549 Msa0993600:three_prime_UTR 45.0%
!!! GGTTTTGGTATCGGTCTTCT+TGG - chr6_4:66387638-66387657 Msa0993600:three_prime_UTR 45.0%
!! TTTGGTATCGGTCTTCTTGG+AGG - chr6_4:66387641-66387660 Msa0993600:three_prime_UTR 45.0%
AGTGTGTCGTGGTAACAAAG+GGG + chr6_4:66387846-66387865 None:intergenic 45.0%
CAGTGTGTCGTGGTAACAAA+GGG + chr6_4:66387847-66387866 None:intergenic 45.0%
TCAGTGTGTCGTGGTAACAA+AGG + chr6_4:66387848-66387867 None:intergenic 45.0%
CGTGTCCATGTCCAACAAAA+GGG + chr6_4:66388051-66388070 None:intergenic 45.0%
! GCAATCACAAATGTTGGTGG+CGG - chr6_4:66388387-66388406 Msa0993600:intron 45.0%
GCACCAACACTTCTAATCGA+AGG + chr6_4:66388443-66388462 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr6_4:66390122-66390141 Msa0993600:intron 45.0%
TTGTCAAATATCGGCCATGG+TGG - chr6_4:66390125-66390144 Msa0993600:intron 45.0%
CGCTGGAATACTTCACGAAT+TGG + chr6_4:66390184-66390203 None:intergenic 45.0%
ATGTGGATGACAGACAATGG+TGG + chr6_4:66390236-66390255 None:intergenic 45.0%
ACCCCCTCTCCTAATCTAAA+AGG + chr6_4:66390537-66390556 None:intergenic 45.0%
AGGAGAGGGGGTAAAATTTG+GGG - chr6_4:66390545-66390564 Msa0993600:intron 45.0%
CAGAGTGATTGCATGACTGA+AGG + chr6_4:66390581-66390600 None:intergenic 45.0%
GTCATGCAATCACTCTGTTG+AGG - chr6_4:66390584-66390603 Msa0993600:intron 45.0%
CACATGACAACGTGAATGTG+GGG - chr6_4:66390691-66390710 Msa0993600:intron 45.0%
ACCCTGACAATAGAGAATCC+AGG - chr6_4:66390716-66390735 Msa0993600:intron 45.0%
GACCTGGATTCTCTATTGTC+AGG + chr6_4:66390721-66390740 None:intergenic 45.0%
GACAATAGAGAATCCAGGTC+CGG - chr6_4:66390721-66390740 Msa0993600:intron 45.0%
! TATGTGTCCTTGCCTTGTTG+TGG - chr6_4:66390873-66390892 Msa0993600:intron 45.0%
CTTCAAACCACAACAAGGCA+AGG + chr6_4:66390883-66390902 None:intergenic 45.0%
! CTTGCCTTGTTGTGGTTTGA+AGG - chr6_4:66390881-66390900 Msa0993600:intron 45.0%
GATTATGCTGTGAATCCCAC+AGG - chr6_4:66391294-66391313 Msa0993600:intron 45.0%
TCTGCAACCCGGTTTCAAAA+AGG - chr6_4:66391338-66391357 Msa0993600:intron 45.0%
ATTAGAGTCGTCCACCTTGT+TGG + chr6_4:66391465-66391484 None:intergenic 45.0%
AACCTAATCCAGCTCGAACA+AGG - chr6_4:66391498-66391517 Msa0993600:intron 45.0%
ACCTAATCCAGCTCGAACAA+GGG - chr6_4:66391499-66391518 Msa0993600:intron 45.0%
!! CTGATTTCAGGAGTGGGTTT+TGG - chr6_4:66391809-66391828 Msa0993600:intron 45.0%
CCAAAACCAACTTGTAAGCC+CGG + chr6_4:66391845-66391864 None:intergenic 45.0%
!!! CGGGCTTACAAGTTGGTTTT+GGG - chr6_4:66391843-66391862 Msa0993600:intron 45.0%
ATTTGGTTATGGTGTGGGCA+AGG - chr6_4:66391895-66391914 Msa0993600:intron 45.0%
TTTGGTTATGGTGTGGGCAA+GGG - chr6_4:66391896-66391915 Msa0993600:intron 45.0%
! GGAAATCCTTTTCGTGGTTC+TGG - chr6_4:66391956-66391975 Msa0993600:intron 45.0%
ATGCTTCCAGAACCACGAAA+AGG + chr6_4:66391965-66391984 None:intergenic 45.0%
ATCCAAACAGCGAAAATCGG+AGG + chr6_4:66392097-66392116 None:intergenic 45.0%
! CTAGTCACAGTTTTCCCCTA+TGG + chr6_4:66392425-66392444 None:intergenic 45.0%
GGAGACTGAAACATGCCATA+CGG - chr6_4:66392671-66392690 Msa0993600:intron 45.0%
GGATGAGATTACTGCACTTG+TGG - chr6_4:66392867-66392886 Msa0993600:intron 45.0%
TCGACAAGTGGAGAAGATGA+TGG - chr6_4:66392941-66392960 Msa0993600:intron 45.0%
TGAATATGGCACACCACACA+TGG + chr6_4:66393260-66393279 None:intergenic 45.0%
!!! AATTTTTAAATATAATTTGT+TGG + chr6_4:66392562-66392581 None:intergenic 5.0%
!! AATACATTAAAATTTATAAA+TGG + chr6_4:66392594-66392613 None:intergenic 5.0%
GAGAAACGGTGACGATGAGA+AGG - chr6_4:66387529-66387548 Msa0993600:three_prime_UTR 50.0%
!! ACGATGAGAAGGGTTTGCTG+TGG - chr6_4:66387540-66387559 Msa0993600:three_prime_UTR 50.0%
GGGAAATTGGGACCTGGATT+CGG - chr6_4:66387593-66387612 Msa0993600:three_prime_UTR 50.0%
!! TGTGGCCTCGGTTTTGGTAT+CGG - chr6_4:66387629-66387648 Msa0993600:three_prime_UTR 50.0%
GAAGACCGATACCAAAACCG+AGG + chr6_4:66387637-66387656 None:intergenic 50.0%
GTCAACATGTCAGTGTGTCG+TGG + chr6_4:66387857-66387876 None:intergenic 50.0%
!! ATCACAAGTCGGTGTCGTGT+CGG - chr6_4:66387915-66387934 Msa0993600:intron 50.0%
GCGTGTCCATGTCCAACAAA+AGG + chr6_4:66388052-66388071 None:intergenic 50.0%
GTCGTGTGTAGTGCATGTGT+CGG + chr6_4:66388313-66388332 None:intergenic 50.0%
! CTTCTAATCGAAGGCGCATG+CGG + chr6_4:66388434-66388453 None:intergenic 50.0%
! GCGCCTTCGATTAGAAGTGT+TGG - chr6_4:66388437-66388456 Msa0993600:intron 50.0%
! GCGTCGGCACTTCTAATTGA+AGG + chr6_4:66388775-66388794 None:intergenic 50.0%
!! TGTCGGTGTTGTGTCGTTGT+CGG - chr6_4:66389221-66389240 Msa0993600:intron 50.0%
! GCACCGACACTTCTGATCAA+AGG + chr6_4:66389252-66389271 None:intergenic 50.0%
TGAATGTGGGGTTTCCCTGA+TGG - chr6_4:66390421-66390440 Msa0993600:intron 50.0%
AGAGAATCCAGGTCCGGAAT+TGG - chr6_4:66390727-66390746 Msa0993600:intron 50.0%
GAGAATCCAGGTCCGGAATT+GGG - chr6_4:66390728-66390747 Msa0993600:intron 50.0%
TTATCTCCCAATTCCGGACC+TGG + chr6_4:66390737-66390756 None:intergenic 50.0%
CCATGACAGAATCAGCCTGT+GGG + chr6_4:66391312-66391331 None:intergenic 50.0%
TGAAACCGGGTTGCAGAACT+TGG + chr6_4:66391335-66391354 None:intergenic 50.0%
GAATCAACAGGCCAACAAGG+TGG - chr6_4:66391451-66391470 Msa0993600:intron 50.0%
CCTAATCCAGCTCGAACAAG+GGG - chr6_4:66391500-66391519 Msa0993600:intron 50.0%
CTTGTAAGCCCGGAATTCCA+GGG + chr6_4:66391835-66391854 None:intergenic 50.0%
ACTTGTAAGCCCGGAATTCC+AGG + chr6_4:66391836-66391855 None:intergenic 50.0%
GGAATTCCGGGCTTACAAGT+TGG - chr6_4:66391836-66391855 Msa0993600:intron 50.0%
!!! CCGGGCTTACAAGTTGGTTT+TGG - chr6_4:66391842-66391861 Msa0993600:intron 50.0%
!!! GTTGGTTTTGGGTTTGGTGC+TGG - chr6_4:66391854-66391873 Msa0993600:intron 50.0%
!! TTTGGGTTTGGTGCTGGATG+TGG - chr6_4:66391860-66391879 Msa0993600:intron 50.0%
!! TTTGGTGCTGGATGTGGTGT+TGG - chr6_4:66391866-66391885 Msa0993600:intron 50.0%
!! GCTGGATGTGGTGTTGGTTT+AGG - chr6_4:66391872-66391891 Msa0993600:intron 50.0%
! GTCCTCCGATTTTCGCTGTT+TGG - chr6_4:66392092-66392111 Msa0993600:intron 50.0%
TTGTGCATTAAGGGCCCGTT+TGG + chr6_4:66392314-66392333 None:intergenic 50.0%
TGGTCCAACCAACTGCTCAA+TGG - chr6_4:66392499-66392518 Msa0993600:intron 50.0%
!! TTGGGACCTGGATTCGGTGT+TGG - chr6_4:66387599-66387618 Msa0993600:three_prime_UTR 55.0%
!! CTGGATTCGGTGTTGGTGCT+GGG - chr6_4:66387606-66387625 Msa0993600:three_prime_UTR 55.0%
GTGTCGTGGTAACAAAGGGG+TGG + chr6_4:66387843-66387862 None:intergenic 55.0%
GGCGGACACAAGACACATCT+CGG - chr6_4:66388405-66388424 Msa0993600:intron 55.0%
TGCGCCCATTACCCCCAAAA+TGG + chr6_4:66390798-66390817 None:intergenic 55.0%
! CCCACAGGCTGATTCTGTCA+TGG - chr6_4:66391309-66391328 Msa0993600:intron 55.0%
GCCATGACAGAATCAGCCTG+TGG + chr6_4:66391313-66391332 None:intergenic 55.0%
CATGGCCAAGTTCTGCAACC+CGG - chr6_4:66391327-66391346 Msa0993600:intron 55.0%
CCCCTTGTTCGAGCTGGATT+AGG + chr6_4:66391503-66391522 None:intergenic 55.0%
AAGGTTCCCCTTGTTCGAGC+TGG + chr6_4:66391509-66391528 None:intergenic 55.0%
GCTCGAACAAGGGGAACCTT+TGG - chr6_4:66391509-66391528 Msa0993600:intron 55.0%
!! GGGTTTTGGCCCTGGAATTC+CGG - chr6_4:66391823-66391842 Msa0993600:intron 55.0%
!! GGTTTTGGCCCTGGAATTCC+GGG - chr6_4:66391824-66391843 Msa0993600:intron 55.0%
CCAGCACCAACACCGAATCC+AGG + chr6_4:66387608-66387627 None:intergenic 60.0%
!! CCTGGATTCGGTGTTGGTGC+TGG - chr6_4:66387605-66387624 Msa0993600:three_prime_UTR 60.0%
!! TTCGGTGTTGGTGCTGGGTG+TGG - chr6_4:66387611-66387630 Msa0993600:three_prime_UTR 60.0%
!! AGTCGGTGTCGTGTCGGACA+TGG - chr6_4:66387921-66387940 Msa0993600:intron 60.0%
CGGTGTGTGTGTGTCGTGTG+CGG + chr6_4:66388655-66388674 None:intergenic 60.0%
TCCACCAGTGCAGTCCACCA+TGG + chr6_4:66390142-66390161 None:intergenic 60.0%
!! TCAGGAGTGGGTTTTGGCCC+TGG - chr6_4:66391815-66391834 Msa0993600:intron 60.0%
!! GTTGGTGCTGGGTGTGGCCT+CGG - chr6_4:66387617-66387636 Msa0993600:three_prime_UTR 65.0%
! GCTGGGTGTGGCCTCGGTTT+TGG - chr6_4:66387623-66387642 Msa0993600:three_prime_UTR 65.0%
!! TCGGCCATGGTGGACTGCAC+TGG - chr6_4:66390135-66390154 Msa0993600:intron 65.0%
!! GCCATGGTGGACTGCACTGG+TGG - chr6_4:66390138-66390157 Msa0993600:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 66387393 66393348 66387393 ID=Msa0993600;Name=Msa0993600
chr6_4 mRNA 66387393 66393348 66387393 ID=Msa0993600-mRNA-1;Parent=Msa0993600;Name=Msa0993600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=134|1|1|1|1|1|3|388|134
chr6_4 exon 66387393 66387874 66387393 ID=Msa0993600-mRNA-1:exon:12407;Parent=Msa0993600-mRNA-1
chr6_4 exon 66388748 66388922 66388748 ID=Msa0993600-mRNA-1:exon:12406;Parent=Msa0993600-mRNA-1
chr6_4 exon 66393079 66393348 66393079 ID=Msa0993600-mRNA-1:exon:12405;Parent=Msa0993600-mRNA-1
chr6_4 five_prime_UTR 66393215 66393348 66393215 ID=Msa0993600-mRNA-1:five_prime_utr;Parent=Msa0993600-mRNA-1
chr6_4 CDS 66393079 66393214 66393079 ID=Msa0993600-mRNA-1:cds;Parent=Msa0993600-mRNA-1
chr6_4 CDS 66388748 66388922 66388748 ID=Msa0993600-mRNA-1:cds;Parent=Msa0993600-mRNA-1
chr6_4 CDS 66387781 66387874 66387781 ID=Msa0993600-mRNA-1:cds;Parent=Msa0993600-mRNA-1
chr6_4 three_prime_UTR 66387393 66387780 66387393 ID=Msa0993600-mRNA-1:three_prime_utr;Parent=Msa0993600-mRNA-1
Gene Sequence

>Msa0993600

ATGAGAAACGGTGACGATGAGAAGGGTTTGCTGTGGAAACTTCCAGTGTTGAAGTCCAGCAATTTAGGGAAATTGGGACCTGGATTCGGTGTTGGTGCTGGGTGTGGCCTCGGTTTTGGTATCGGTCTTCTTGGAGGAGTGGGTTTTGGCCCTGGAATTCCGGGCTTACAAGTTGGTTTTGGGTTTGGTGCTGGATGTGGTGTTGGTTTAGGATTTGGTTATGGTGTGGGCAAGGGAATTGCACAAGATGAGTATAGAAGGTACTCAAATGTTGGAAATCCTTTTCGTGGTTCTGGAAGCATTATTAATGAGGATGAGATTACTGCACTTGTGGATGACATAGTCATAAATACTAAAAAGCTTATCAAGGCAACATCAAGAGAAATCGACAAGTGGAGAAGATGA

Protein sequence

>Msa0993600

MRNGDDEKGLLWKLPVLKSSNLGKLGPGFGVGAGCGLGFGIGLLGGVGFGPGIPGLQVGFGFGAGCGVGLGFGYGVGKGIAQDEYRRYSNVGNPFRGSGSIINEDEITALVDDIVINTKKLIKATSREIDKWRR*