AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460170 MtrunA17_Chr2g0303521 95.133 637 29 1 1 637 1 635 0.0 1165
Msa1460170 MtrunA17_Chr5g0405741 34.598 448 275 8 199 635 195 635 4.97e-68 234
Msa1460170 MtrunA17_Chr7g0250681 32.805 442 276 9 208 635 405 839 8.45e-58 209
Msa1460170 MtrunA17_Chr8g0335341 31.544 447 283 7 208 635 277 719 6.81e-52 191
Msa1460170 MtrunA17_Chr3g0139411 29.336 467 297 10 188 633 248 702 4.38e-46 174
Msa1460170 MtrunA17_Chr2g0331821 27.962 422 283 7 213 621 325 738 1.18e-37 149
Msa1460170 MtrunA17_Chr1g0211271 26.503 449 294 10 207 626 273 714 6.45e-34 138
Msa1460170 MtrunA17_Chr4g0004471 28.571 343 230 6 213 550 128 460 3.68e-31 128
Msa1460170 MtrunA17_Chr3g0124841 26.395 466 291 11 208 636 454 904 6.06e-29 123
Msa1460170 MtrunA17_Chr4g0072011 24.786 351 234 8 196 525 323 664 2.52e-25 111
Msa1460170 MtrunA17_Chr5g0448571 30.855 269 169 4 297 552 438 702 1.74e-24 108
Msa1460170 MtrunA17_Chr5g0440551 30.417 240 151 4 293 520 428 663 6.72e-24 107
Msa1460170 MtrunA17_Chr3g0118401 30.833 240 150 4 293 520 444 679 7.47e-24 107
Msa1460170 MtrunA17_Chr2g0298171 26.944 360 215 10 201 524 525 872 6.48e-22 100
Msa1460170 MtrunA17_Chr3g0143731 23.580 352 231 9 296 637 362 685 4.58e-19 91.7
Msa1460170 MtrunA17_Chr8g0382541 30.909 165 96 5 376 529 3 160 3.69e-14 72.4
Msa1460170 MtrunA17_Chr3g0130761 28.017 232 155 4 298 523 436 661 3.55e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460170 AT2G34670.2 42.777 713 295 17 1 635 1 678 3.63e-151 453
Msa1460170 AT2G34670.1 43.304 575 216 16 1 500 1 540 2.31e-115 356
Msa1460170 AT3G51290.3 34.234 444 276 5 199 635 191 625 1.67e-72 246
Msa1460170 AT3G51290.2 34.234 444 276 5 199 635 191 625 1.23e-71 247
Msa1460170 AT3G51290.1 33.333 444 274 6 199 635 191 619 5.20e-67 231
Msa1460170 AT1G02110.1 32.041 490 310 8 158 635 221 699 7.10e-60 213
Msa1460170 AT3G60320.1 28.798 441 298 4 208 635 355 792 7.19e-49 183
Msa1460170 AT1G52320.3 27.626 438 289 9 210 631 25 450 7.86e-40 152
Msa1460170 AT1G52320.4 27.626 438 289 9 210 631 25 450 7.86e-40 152
Msa1460170 AT1G52320.1 27.064 436 294 7 210 631 328 753 1.37e-39 155
Msa1460170 AT1G52320.2 27.064 436 294 7 210 631 351 776 1.87e-39 155
Msa1460170 AT1G52320.5 27.064 436 294 7 210 631 351 776 1.87e-39 155
Msa1460170 AT5G25590.1 27.335 439 293 8 209 631 330 758 1.04e-37 150
Msa1460170 AT1G77500.1 27.851 456 275 9 208 637 449 876 1.69e-31 131
Msa1460170 AT1G21740.1 25.963 493 302 11 187 637 476 947 1.17e-29 125
Msa1460170 AT4G35240.4 25.000 456 259 11 208 629 419 825 6.03e-27 117
Msa1460170 AT4G35240.3 25.000 456 259 11 208 629 419 825 6.03e-27 117
Msa1460170 AT4G35240.2 25.000 456 259 11 208 629 419 825 6.51e-27 117
Msa1460170 AT4G35240.1 25.000 456 259 11 208 629 419 825 6.51e-27 117
Msa1460170 AT2G27090.2 33.463 257 150 7 293 536 424 672 6.45e-26 113
Msa1460170 AT2G27090.1 33.463 257 150 7 293 536 424 672 6.45e-26 113
Msa1460170 AT2G17110.1 28.723 376 215 12 213 553 314 671 1.79e-23 105
Msa1460170 AT4G39790.1 27.897 233 152 3 293 513 371 599 3.25e-20 95.5
Msa1460170 AT4G30130.3 29.032 248 158 4 293 524 397 642 1.48e-17 87.4
Msa1460170 AT4G30130.1 29.032 248 158 4 293 524 397 642 1.48e-17 87.4
Msa1460170 AT1G20530.1 27.473 273 170 8 297 552 310 571 7.65e-17 84.7
Msa1460170 AT2G19090.1 28.800 250 158 4 293 524 478 725 3.13e-16 83.2
Msa1460170 AT5G54480.1 22.932 266 169 7 298 548 401 645 2.04e-11 67.8

Find 197 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCCACTTGCTTCTTTA+AGG 0.121977 tig0040705:+11613 Msa1460170:intergenic
TGAAACAACTTCATCCATTT+TGG 0.154541 tig0040705:-12593 Msa1460170:CDS
GCGACTGCCGCTCAACTTTC+TGG 0.157379 tig0040705:-16444 Msa1460170:five_prime_UTR
AAACATCACTACATAAATTT+TGG 0.162424 tig0040705:-16592 Msa1460170:five_prime_UTR
TTATACACGCTGAGGCTTTC+AGG 0.162797 tig0040705:+15674 Msa1460170:intergenic
TCGATCAAATGTTGAGAAAT+TGG 0.186597 tig0040705:-12650 Msa1460170:CDS
CTCGGCCTGTTGAGCAATTA+TGG 0.187743 tig0040705:+11805 Msa1460170:intergenic
TAATCAACTCATCTTCAAAA+TGG 0.208562 tig0040705:-16355 Msa1460170:exon
AAGTGTGAAAGCAGATTATT+TGG 0.231735 tig0040705:-11594 Msa1460170:CDS
CTTCCTCTCAAACTCCAATT+TGG 0.258099 tig0040705:+12732 Msa1460170:intergenic
GTTTGGGAGGATAGGGCTTC+TGG 0.264831 tig0040705:+16735 Msa1460170:intergenic
CAGTGGGAGCTTGGGCTTGA+TGG 0.280020 tig0040705:-12100 Msa1460170:CDS
CGCTTTCAAATAAGCTAATA+AGG 0.286610 tig0040705:+16227 Msa1460170:intergenic
AAGACAGCCTCAGAAATTTA+TGG 0.291498 tig0040705:+16475 Msa1460170:intergenic
GGTGGGGAAGGTGGGGCTTC+AGG 0.300463 tig0040705:+16126 Msa1460170:intergenic
TTCATCCTCAAATTCAGTTT+TGG 0.303718 tig0040705:+15894 Msa1460170:intergenic
GACAAATTTACAGTACTCTA+AGG 0.305090 tig0040705:+16708 Msa1460170:intergenic
GCCAAGACATTGCATTCTAT+TGG 0.309002 tig0040705:+11441 Msa1460170:intergenic
AGTCGTTTGAGGAGGAGAAT+TGG 0.309003 tig0040705:-15924 Msa1460170:CDS
TTGAGAGTGAGGCTTCTTAT+TGG 0.311587 tig0040705:-12258 Msa1460170:CDS
GTCGTTTGAGGAGGAGAATT+GGG 0.314868 tig0040705:-15923 Msa1460170:CDS
TTCATCTATAAGTTCCAAAA+TGG 0.322487 tig0040705:+12579 Msa1460170:intergenic
ACTCTTCTGCGGCAGAATTC+TGG 0.331983 tig0040705:-15613 Msa1460170:CDS
AAATCAGGCGGTGGGGAAGG+TGG 0.336430 tig0040705:+16117 Msa1460170:intergenic
CAGTACTCTAAGGCTTTGTT+TGG 0.341198 tig0040705:+16718 Msa1460170:intergenic
TTTGGGTTAGCTCAGTTTGT+AGG 0.348692 tig0040705:-16871 Msa1460170:five_prime_UTR
TTACATCAGCTTCTGAATCT+TGG 0.353547 tig0040705:+15869 Msa1460170:intergenic
AGAAAACTCGGCGTCATCTT+TGG 0.357338 tig0040705:+14662 Msa1460170:intergenic
GAATTAGACTTTGCCTCTAC+TGG 0.357502 tig0040705:-16153 Msa1460170:CDS
GCTAAATACCCTTGCAGAAC+TGG 0.365688 tig0040705:+14725 Msa1460170:intergenic
AGAGGGTGAGGACATTGATT+TGG 0.376255 tig0040705:-12689 Msa1460170:CDS
AAGGCTTTGTTTGGGAGGAT+AGG 0.386632 tig0040705:+16727 Msa1460170:intergenic
CGGCAGTTAATGCAACCAAC+TGG 0.389360 tig0040705:+12545 Msa1460170:intergenic
TTTATGAAATAGCGGATGCC+TGG 0.389810 tig0040705:+11652 Msa1460170:intergenic
AGAAAAGGAGGCAGCGGCGG+AGG 0.389892 tig0040705:+16090 Msa1460170:intergenic
GAAAGCCTCAGCGTGTATAA+AGG 0.389967 tig0040705:-15671 Msa1460170:CDS
AGCACAAAATACATATGATA+TGG 0.393102 tig0040705:-11349 Msa1460170:three_prime_UTR
TCAGAAATTTATGGAGCATC+AGG 0.395589 tig0040705:+16484 Msa1460170:intergenic
AGGCTTTGTTTGGGAGGATA+GGG 0.401242 tig0040705:+16728 Msa1460170:intergenic
ACGTTCCATAATTGCTCAAC+AGG 0.401754 tig0040705:-11810 Msa1460170:CDS
CACAAAACATGTTCACTTTG+TGG 0.402328 tig0040705:-11416 Msa1460170:three_prime_UTR
GGAAAGAATGGGATGACTTT+GGG 0.402426 tig0040705:-16888 Msa1460170:five_prime_UTR
AGGAAAGAATGGGATGACTT+TGG 0.404780 tig0040705:-16889 Msa1460170:five_prime_UTR
ATTGTGTCTAGCCATTCTTT+TGG 0.406544 tig0040705:-11287 Msa1460170:three_prime_UTR
GGGAAGGTGGGGCTTCAGGC+AGG 0.409227 tig0040705:+16130 Msa1460170:intergenic
GGAGGAGGGAATTACCAAAT+TGG 0.413638 tig0040705:-12746 Msa1460170:CDS
ATCAGGCGGTGGGGAAGGTG+GGG 0.414224 tig0040705:+16119 Msa1460170:intergenic
AGCGGCGGAGGTGGTAAATC+AGG 0.416274 tig0040705:+16102 Msa1460170:intergenic
CACTGAGGTTACTCAGCTGC+TGG 0.417437 tig0040705:+12341 Msa1460170:intergenic
ATGTTCACTTTGTGGTGCTT+TGG 0.422999 tig0040705:-11408 Msa1460170:three_prime_UTR
AGAAGTTGTAGAGTCGTTTG+AGG 0.425062 tig0040705:-15935 Msa1460170:CDS
AATCAGGCGGTGGGGAAGGT+GGG 0.425705 tig0040705:+16118 Msa1460170:intergenic
CGCTTTCATTGCCATTCCTT+AGG 0.430652 tig0040705:+12155 Msa1460170:intergenic
CATCTGCTGCAAATTGATCA+AGG 0.433756 tig0040705:-15997 Msa1460170:CDS
ATTTGTGAACAGTGGGAGCT+TGG 0.436438 tig0040705:-12109 Msa1460170:CDS
TTTGTGAACAGTGGGAGCTT+GGG 0.438067 tig0040705:-12108 Msa1460170:CDS
GAGGAAGGGAAAGGAAAGAA+TGG 0.439059 tig0040705:-16900 Msa1460170:five_prime_UTR
AATCAACTCATCTTCAAAAT+GGG 0.454841 tig0040705:-16354 Msa1460170:exon
TGTTGGTATGGAGAGTTAGA+AGG 0.458976 tig0040705:+11253 Msa1460170:intergenic
AGGGTAAGAAGTACCTTATC+TGG 0.459508 tig0040705:+12073 Msa1460170:intergenic
AATCGCAACAAGAGTATGTA+AGG 0.460182 tig0040705:-12210 Msa1460170:CDS
CAATGAGCTCCCGGCCTGCA+TGG 0.466880 tig0040705:+14627 Msa1460170:intergenic
AAAGCTATTCCCGTGATGAT+TGG 0.468773 tig0040705:-15748 Msa1460170:CDS
ATCACGTAGCGGGAAGCAAC+CGG 0.469892 tig0040705:-15836 Msa1460170:CDS
AGTGGGAGCTTGGGCTTGAT+GGG 0.470747 tig0040705:-12099 Msa1460170:CDS
AATTTCAGAATGTGTTGGTA+TGG 0.475090 tig0040705:+11241 Msa1460170:intergenic
GTTTGCTAGTTTGAAGAGGA+AGG 0.477111 tig0040705:-16915 Msa1460170:five_prime_UTR
GGAGGTGGTAAATCAGGCGG+TGG 0.478919 tig0040705:+16108 Msa1460170:intergenic
TCATCAACTGGTTCTTTGAC+CGG 0.480247 tig0040705:+15817 Msa1460170:intergenic
CCCGGCCTGCATGGTTCACT+AGG 0.481968 tig0040705:+14636 Msa1460170:intergenic
AGGAAGGGAAAGGAAAGAAT+GGG 0.482135 tig0040705:-16899 Msa1460170:five_prime_UTR
GGGTATTTAGCGTACTATCA+TGG 0.482670 tig0040705:-14713 Msa1460170:CDS
TTTGAAGATGAGGGCGATGA+AGG 0.483305 tig0040705:-11686 Msa1460170:CDS
TTTCACTGATGCACCGCCGC+AGG 0.485850 tig0040705:+12611 Msa1460170:intergenic
TTATGAAATAGCGGATGCCT+GGG 0.488435 tig0040705:+11653 Msa1460170:intergenic
TTGGGTTAGCTCAGTTTGTA+GGG 0.489042 tig0040705:-16870 Msa1460170:five_prime_UTR
GCAGAGGAACTATCATCAAC+TGG 0.489604 tig0040705:+15805 Msa1460170:intergenic
GAAACTTTACAAGGCAGTAA+AGG 0.489711 tig0040705:-14571 Msa1460170:intron
CAGTTGGTTGCATTAACTGC+CGG 0.490052 tig0040705:-12544 Msa1460170:CDS
GGTAAATCAGGCGGTGGGGA+AGG 0.491542 tig0040705:+16114 Msa1460170:intergenic
AGTACTCTAAGGCTTTGTTT+GGG 0.492717 tig0040705:+16719 Msa1460170:intergenic
TGTCAAATTGTGTGAACATA+AGG 0.494043 tig0040705:+17098 Msa1460170:intergenic
AGTTGTAGAGTCGTTTGAGG+AGG 0.494301 tig0040705:-15932 Msa1460170:CDS
CCTAGTGAACCATGCAGGCC+GGG 0.499393 tig0040705:-14636 Msa1460170:CDS
TCCTAGTGAACCATGCAGGC+CGG 0.503939 tig0040705:-14637 Msa1460170:CDS
GGATATTGCATATTATATGC+AGG 0.505560 tig0040705:-16849 Msa1460170:intron
TGCTTCCTCTCAAGCAATTG+AGG 0.505979 tig0040705:-11483 Msa1460170:CDS
GCTTGATGGGTTACCAGATA+AGG 0.507842 tig0040705:-12086 Msa1460170:intron
AATAGCCTCAATTGCTTGAG+AGG 0.509454 tig0040705:+11478 Msa1460170:intergenic
AGAAACCAAAACTGAATTTG+AGG 0.510649 tig0040705:-15899 Msa1460170:CDS
GCCAATAGAATGCAATGTCT+TGG 0.510999 tig0040705:-11442 Msa1460170:exon
GCGGAGGTGCTCGAAGTCCC+TGG 0.515708 tig0040705:-11738 Msa1460170:CDS
AAAGTCTAATTCTAATGTAT+CGG 0.518544 tig0040705:+16164 Msa1460170:intergenic
TACAATTCAGTTTGAGAGTG+AGG 0.520111 tig0040705:-12269 Msa1460170:CDS
TTGAGCAATTATGGAACGTA+TGG 0.520980 tig0040705:+11814 Msa1460170:intergenic
ACATCTCTTCGTGACACTGA+TGG 0.521142 tig0040705:-11516 Msa1460170:CDS
TGAACTAAACTTTGAAGATG+AGG 0.521432 tig0040705:-11696 Msa1460170:CDS
ATTGATGAGGATGGAAGGGT+TGG 0.521693 tig0040705:-16315 Msa1460170:CDS
AAGCTCCCACTGTTCACAAA+TGG 0.522693 tig0040705:+12111 Msa1460170:intergenic
ATTGCCATTCCTTAGGCAGT+TGG 0.523231 tig0040705:+12162 Msa1460170:intergenic
AAGTGAAAACAAAATTGAAA+AGG 0.524867 tig0040705:+16956 Msa1460170:intergenic
TTTGCTAGTTTGAAGAGGAA+GGG 0.525970 tig0040705:-16914 Msa1460170:five_prime_UTR
AAAGGAGGCAGCGGCGGAGG+TGG 0.526432 tig0040705:+16093 Msa1460170:intergenic
AGTTGGTTGCATTAACTGCC+GGG 0.528298 tig0040705:-12543 Msa1460170:intron
ATGCAGTTAGTGAGTATCAA+TGG 0.528715 tig0040705:-16512 Msa1460170:five_prime_UTR
TTCAGCTTACCAACTGCCTA+AGG 0.530755 tig0040705:-12171 Msa1460170:CDS
CCGTGATGATTGGTAGAAGC+GGG 0.533019 tig0040705:-15738 Msa1460170:CDS
CTTTCATTGTGGAGTATCTG+AGG 0.533944 tig0040705:+16790 Msa1460170:intergenic
ATCGTTGCTATTTCAACCTG+TGG 0.535495 tig0040705:-15965 Msa1460170:CDS
CAGAATTCAGAATTGTATTG+TGG 0.537342 tig0040705:+12314 Msa1460170:intergenic
GGCAGTTAATGCAACCAACT+GGG 0.539937 tig0040705:+12546 Msa1460170:intergenic
CAAGTATTGATGAGGATGGA+AGG 0.542254 tig0040705:-16320 Msa1460170:CDS
ACAACTTCTACTTTATCCAC+AGG 0.542390 tig0040705:+15949 Msa1460170:intergenic
ATGTAAGGACCCTCAGTAAG+TGG 0.544051 tig0040705:-12195 Msa1460170:CDS
ACTCTAAGGCTTTGTTTGGG+AGG 0.549780 tig0040705:+16722 Msa1460170:intergenic
TCACTTTGTGGTGCTTTGGA+TGG 0.550239 tig0040705:-11404 Msa1460170:three_prime_UTR
GTGTGGGAAGATCACGTAGC+GGG 0.550776 tig0040705:-15846 Msa1460170:CDS
ACAGTTAGTTTGTAATAGAG+AGG 0.552074 tig0040705:-16262 Msa1460170:CDS
TTCAGAAGCTGATGTAAGTG+TGG 0.554428 tig0040705:-15863 Msa1460170:CDS
TGCTTGTGCTTCATGCTGAT+AGG 0.554621 tig0040705:-11372 Msa1460170:three_prime_UTR
GAACTAAACTTTGAAGATGA+GGG 0.557538 tig0040705:-11695 Msa1460170:CDS
GCATGGATGCCATCAGTCAC+AGG 0.558884 tig0040705:-12374 Msa1460170:CDS
AGTGTGGCACAATGAGCTCC+CGG 0.562495 tig0040705:+14618 Msa1460170:intergenic
CATAATTGCTCAACAGGCCG+AGG 0.562768 tig0040705:-11804 Msa1460170:CDS
CTAGTCCTAGTGAACCATGC+AGG 0.563303 tig0040705:-14641 Msa1460170:CDS
AATGAAATACTAGAGAATGA+TGG 0.563894 tig0040705:-16036 Msa1460170:CDS
GGCGTCATCTTTGGTGAACG+TGG 0.564520 tig0040705:+14671 Msa1460170:intergenic
AAGTATTGATGAGGATGGAA+GGG 0.564904 tig0040705:-16319 Msa1460170:CDS
GGCTTCAGGCAGGCCAGTAG+AGG 0.565066 tig0040705:+16140 Msa1460170:intergenic
GCAAGAAAAGGAGGCAGCGG+CGG 0.566054 tig0040705:+16087 Msa1460170:intergenic
CTTTGTTTGCTAGTTTGAAG+AGG 0.566127 tig0040705:-16919 Msa1460170:five_prime_UTR
TCAGCAAGAAAAGGAGGCAG+CGG 0.569066 tig0040705:+16084 Msa1460170:intergenic
GATATTGCATATTATATGCA+GGG 0.569229 tig0040705:-16848 Msa1460170:intron
ATCAGTGTCACGAAGAGATG+TGG 0.569298 tig0040705:+11518 Msa1460170:intergenic
TAATTCTAATGTATCGGACT+CGG 0.570082 tig0040705:+16170 Msa1460170:intergenic
TCGCACCATTTGTGAACAGT+GGG 0.573102 tig0040705:-12116 Msa1460170:CDS
TTACCAAATTGGAGTTTGAG+AGG 0.577960 tig0040705:-12735 Msa1460170:CDS
TCTGAGGTTATCAAGAGTCA+TGG 0.581424 tig0040705:+11550 Msa1460170:intergenic
TTAGCGTACTATCATGGAGT+AGG 0.582628 tig0040705:-14707 Msa1460170:CDS
TTGAAAGCGTTGAGGAACAC+CGG 0.583723 tig0040705:-16213 Msa1460170:CDS
AGAAGCCTTAAAGAAGCAAG+TGG 0.583882 tig0040705:-11618 Msa1460170:CDS
TGGTAGAAGCGGGAGAACAT+TGG 0.584904 tig0040705:-15728 Msa1460170:CDS
GAGGTGGTAAATCAGGCGGT+GGG 0.585878 tig0040705:+16109 Msa1460170:intergenic
CAAGAGAACCAGTTCTGCAA+GGG 0.586453 tig0040705:-14733 Msa1460170:CDS
CATATGCAAGGAAAGGAAGA+AGG 0.587629 tig0040705:-16292 Msa1460170:CDS
AATGGAGAAATCTTTCATTG+TGG 0.591670 tig0040705:+16779 Msa1460170:intergenic
CCCGTGATGATTGGTAGAAG+CGG 0.592602 tig0040705:-15739 Msa1460170:CDS
ACTGAGGTTACTCAGCTGCT+GGG 0.593378 tig0040705:+12342 Msa1460170:intergenic
TAGAAGCGGGAGAACATTGG+AGG 0.594332 tig0040705:-15725 Msa1460170:CDS
TAGTTTGAAGAGGAAGGGAA+AGG 0.594898 tig0040705:-16909 Msa1460170:five_prime_UTR
CTTACCAACTGCCTAAGGAA+TGG 0.597362 tig0040705:-12166 Msa1460170:CDS
GTAGGTTGTCACAAATGTGG+AGG 0.597775 tig0040705:-12402 Msa1460170:intron
TTATCAAGTATTGATGAGGA+TGG 0.602269 tig0040705:-16324 Msa1460170:CDS
GCAAGAGAACCAGTTCTGCA+AGG 0.603472 tig0040705:-14734 Msa1460170:CDS
CCGCTTCTACCAATCATCAC+GGG 0.604064 tig0040705:+15739 Msa1460170:intergenic
TTTGTAGGTTGTCACAAATG+TGG 0.604629 tig0040705:-12405 Msa1460170:intron
CATATTATATGCAGGAGCCG+TGG 0.604940 tig0040705:-16819 Msa1460170:intron
GAACTGCCTAAGTGTGGCAC+CGG 0.605074 tig0040705:+16194 Msa1460170:intergenic
AAGCTGAATCCACTTACTGA+GGG 0.607524 tig0040705:+12186 Msa1460170:intergenic
CCCGCTTCTACCAATCATCA+CGG 0.607752 tig0040705:+15738 Msa1460170:intergenic
TCAGAAGCTGATGTAAGTGT+GGG 0.608804 tig0040705:-15862 Msa1460170:CDS
TAGCTTATTTGAAAGCGTTG+AGG 0.611440 tig0040705:-16221 Msa1460170:CDS
AGATCAGTGCCTGTGACTGA+TGG 0.614904 tig0040705:+12365 Msa1460170:intergenic
TTCGCACCATTTGTGAACAG+TGG 0.620328 tig0040705:-12117 Msa1460170:CDS
TGGAAGGGTTGGCATATGCA+AGG 0.624183 tig0040705:-16304 Msa1460170:CDS
TTCACTAGGACTAGAAAACT+CGG 0.624299 tig0040705:+14650 Msa1460170:intergenic
CTAAGGAATGGCAATGAAAG+CGG 0.626651 tig0040705:-12154 Msa1460170:CDS
GATGTGGAAGTCTAGTTCTG+AGG 0.627153 tig0040705:+11534 Msa1460170:intergenic
CTCGGTGAACTGCCTAAGTG+TGG 0.628590 tig0040705:+16188 Msa1460170:intergenic
AACTAGCAAACAAAGTTCAG+AGG 0.632048 tig0040705:+16927 Msa1460170:intergenic
TCTAAACAAAGTAATAGCAG+AGG 0.632255 tig0040705:+15789 Msa1460170:intergenic
AGGTGGTAAATCAGGCGGTG+GGG 0.636641 tig0040705:+16110 Msa1460170:intergenic
TGATGCTCCATAAATTTCTG+AGG 0.637505 tig0040705:-16482 Msa1460170:five_prime_UTR
GGGTTGGCATATGCAAGGAA+AGG 0.637575 tig0040705:-16299 Msa1460170:CDS
TGTCATATAATGTAGGAGGA+GGG 0.638178 tig0040705:-12760 Msa1460170:intron
ATGAAGGTAATATAAGCCCC+AGG 0.640592 tig0040705:-11670 Msa1460170:CDS
CTGATTTGATAAGCCTGCGG+CGG 0.640810 tig0040705:-12624 Msa1460170:CDS
AACAACTTGTTACCAACACT+AGG 0.641249 tig0040705:-16410 Msa1460170:five_prime_UTR
TGGAACGTATGGATAACAGA+AGG 0.642185 tig0040705:+11825 Msa1460170:intergenic
TTGTATTGTGGTTATCACTG+AGG 0.645449 tig0040705:+12326 Msa1460170:intergenic
GTTCTTATTGATATCAGCAG+CGG 0.646022 tig0040705:-15640 Msa1460170:CDS
GGCAGAGAAGAAACTTTACA+AGG 0.650354 tig0040705:-14580 Msa1460170:CDS
GATTTCCTTTATACACGCTG+AGG 0.652486 tig0040705:+15666 Msa1460170:intergenic
TAAGCTGAATCCACTTACTG+AGG 0.654495 tig0040705:+12185 Msa1460170:intergenic
TATGAAATAGCGGATGCCTG+GGG 0.654520 tig0040705:+11654 Msa1460170:intergenic
AGTATCTGAGGTTCGAACCA+CGG 0.654890 tig0040705:+16802 Msa1460170:intergenic
GCAGTTAATGCAACCAACTG+GGG 0.660306 tig0040705:+12547 Msa1460170:intergenic
AACTTGAAAGAAAGTTGCGG+AGG 0.663528 tig0040705:-11754 Msa1460170:CDS
AGAAGCGGGAGAACATTGGA+GGG 0.666824 tig0040705:-15724 Msa1460170:CDS
GGAACACCGGTGCCACACTT+AGG 0.668962 tig0040705:-16200 Msa1460170:CDS
TGTGTTATCAAGTATTGATG+AGG 0.669531 tig0040705:-16328 Msa1460170:CDS
GGCGGAGGTGGTAAATCAGG+CGG 0.670962 tig0040705:+16105 Msa1460170:intergenic
CAAATGTGGAGGATAATGCA+TGG 0.676138 tig0040705:-12391 Msa1460170:CDS
AAATGGTGCGAATAGAAGAG+TGG 0.683375 tig0040705:+12128 Msa1460170:intergenic
AGTCTGATTTGATAAGCCTG+CGG 0.688684 tig0040705:-12627 Msa1460170:CDS
GCAGCGGAGATACTCTTCTG+CGG 0.753633 tig0040705:-15624 Msa1460170:CDS
AGTGTGGGAAGATCACGTAG+CGG 0.767022 tig0040705:-15847 Msa1460170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAATATATAGAAAAAAA+TGG + tig0040705:11540-11559 Msa1460170:intergenic 10.0%
!!! AGAAATTTCAATAATTTTAA+AGG + tig0040705:12741-12760 Msa1460170:intergenic 10.0%
!! ATTGAAAAGGAAAAAAAAAA+AGG + tig0040705:11332-11351 Msa1460170:intergenic 15.0%
!! AAATTTCTTTATGATAGATT+AGG - tig0040705:12753-12772 Msa1460170:intron 15.0%
!! ATAAGCTATAAATGTTATTA+TGG + tig0040705:12937-12956 Msa1460170:intergenic 15.0%
!! ATTTAATGCAAAAGATATTT+AGG - tig0040705:13912-13931 Msa1460170:intron 15.0%
!! TTTAATGCAAAAGATATTTA+GGG - tig0040705:13913-13932 Msa1460170:intron 15.0%
!! TGAAAACAAAAAAAATTACA+AGG - tig0040705:15093-15112 Msa1460170:intron 15.0%
!! GAAAACAAAAAAAATTACAA+GGG - tig0040705:15094-15113 Msa1460170:intron 15.0%
!! TTATTTACTTACTTTACATT+TGG - tig0040705:15488-15507 Msa1460170:intron 15.0%
!! AAGTGAAAACAAAATTGAAA+AGG + tig0040705:11345-11364 Msa1460170:intergenic 20.0%
!!! TTTTCAATTTTGTTTTCACT+TGG - tig0040705:11344-11363 Msa1460170:three_prime_UTR 20.0%
!!! AAACATCACTACATAAATTT+TGG - tig0040705:11706-11725 Msa1460170:CDS 20.0%
!! AAAGTCTAATTCTAATGTAT+CGG + tig0040705:12137-12156 Msa1460170:intergenic 20.0%
!!! TTTTAATACTCTTAAAACTG+AGG - tig0040705:12870-12889 Msa1460170:intron 20.0%
!!! TTTTCAAGCAAATATTAATG+TGG + tig0040705:13202-13221 Msa1460170:intergenic 20.0%
!! TGAAAAAAAGTTATTGAAAC+AGG + tig0040705:13236-13255 Msa1460170:intergenic 20.0%
!! ATATGTAGAATAAGTTTGAT+AGG + tig0040705:13421-13440 Msa1460170:intergenic 20.0%
!!! CTGTTTATTGGTTTTATTAT+TGG + tig0040705:13757-13776 Msa1460170:intergenic 20.0%
!! TATTTAGGGAAAAATAAATC+AGG - tig0040705:13927-13946 Msa1460170:intron 20.0%
!! TAATGAAAAACATTAGTTGT+TGG + tig0040705:14067-14086 Msa1460170:intergenic 20.0%
!!! TTTGAAGTCATTTATTTATC+TGG - tig0040705:15263-15282 Msa1460170:intron 20.0%
!!! TCATTTATTTATCTGGTTTT+TGG - tig0040705:15270-15289 Msa1460170:intron 20.0%
!! TAGGCTTATTTAAATTCAAA+AGG - tig0040705:15322-15341 Msa1460170:intron 20.0%
!!! GGTTATAGTCTTATATATTA+TGG - tig0040705:15343-15362 Msa1460170:intron 20.0%
!!! TGGAAAAATGTAAATTCTTT+TGG - tig0040705:16276-16295 Msa1460170:CDS 20.0%
!!! GGAATGATAATATTTTTTTC+TGG - tig0040705:16408-16427 Msa1460170:five_prime_UTR 20.0%
!! TCAACATTTTCAATTTCTCT+TGG - tig0040705:11271-11290 Msa1460170:three_prime_UTR 25.0%
!! ATTTTCAATTTCTCTTGGAT+TGG - tig0040705:11276-11295 Msa1460170:three_prime_UTR 25.0%
! GATATTGCATATTATATGCA+GGG - tig0040705:11450-11469 Msa1460170:exon 25.0%
!! TGTTTCTTTTGTTCTTTTGT+AGG - tig0040705:11627-11646 Msa1460170:CDS 25.0%
!! ATCACTACATAAATTTTGGA+GGG - tig0040705:11710-11729 Msa1460170:CDS 25.0%
! TAATCAACTCATCTTCAAAA+TGG - tig0040705:11943-11962 Msa1460170:intron 25.0%
! AATCAACTCATCTTCAAAAT+GGG - tig0040705:11944-11963 Msa1460170:intron 25.0%
! AATGAAATACTAGAGAATGA+TGG - tig0040705:12262-12281 Msa1460170:CDS 25.0%
! TTTCGAAATGTTTGAATGTA+TGG - tig0040705:12906-12925 Msa1460170:intron 25.0%
! CACACTCAAAAAATTATATG+CGG - tig0040705:13697-13716 Msa1460170:intron 25.0%
! ATATTAGAAAACTGCAAACA+TGG - tig0040705:13851-13870 Msa1460170:intron 25.0%
! AAATCAGGAACAAAATTTCA+AGG - tig0040705:13942-13961 Msa1460170:intron 25.0%
!!! GTTGGTTTTTTTTTTAGCAA+GGG + tig0040705:14049-14068 Msa1460170:intergenic 25.0%
!!! TGTTGGTTTTTTTTTTAGCA+AGG + tig0040705:14050-14069 Msa1460170:intergenic 25.0%
!!! AGAAACCTTTTTTATGATGT+TGG + tig0040705:14503-14522 Msa1460170:intergenic 25.0%
! ATAAATGACTTCAAAGACAA+AGG + tig0040705:15258-15277 Msa1460170:intergenic 25.0%
! CTAAGAAAGAATAAAAGCAA+AGG + tig0040705:15305-15324 Msa1460170:intergenic 25.0%
!!! CTTTGCTTTTATTCTTTCTT+AGG - tig0040705:15303-15322 Msa1460170:intron 25.0%
!!! TGTTTGTTTCTTTTGATCAA+AGG - tig0040705:15450-15469 Msa1460170:intron 25.0%
! GTTCAAATGTCATATAATGT+AGG - tig0040705:15531-15550 Msa1460170:intron 25.0%
! TTCATCTATAAGTTCCAAAA+TGG + tig0040705:15722-15741 Msa1460170:intergenic 25.0%
! TTATATCTGATTCATATCCT+AGG - tig0040705:15844-15863 Msa1460170:CDS 25.0%
!!! AGTTTTTTAAAGCAAAACCT+AGG + tig0040705:15864-15883 Msa1460170:intergenic 25.0%
!!! AAAACTGTTGTTTGTTTTGT+AGG - tig0040705:15878-15897 Msa1460170:CDS 25.0%
!! TTTGGCAAAACTTTTATGTA+TGG - tig0040705:16294-16313 Msa1460170:CDS 25.0%
!! TTGGCAAAACTTTTATGTAT+GGG - tig0040705:16295-16314 Msa1460170:CDS 25.0%
!! AGATGTGTAAATTTTATGAG+CGG - tig0040705:16387-16406 Msa1460170:five_prime_UTR 25.0%
!! AGACAACATTCTAAAAAAGT+TGG - tig0040705:16518-16537 Msa1460170:five_prime_UTR 25.0%
! AAAAACTTGAAAGAAAGTTG+CGG - tig0040705:16541-16560 Msa1460170:five_prime_UTR 25.0%
! AGCACAAAATACATATGATA+TGG - tig0040705:16949-16968 Msa1460170:five_prime_UTR 25.0%
! AATACAAAAAGCCAAAAGAA+TGG + tig0040705:17025-17044 Msa1460170:intergenic 25.0%
! TGAAAAATTTCAGAATGTGT+TGG + tig0040705:17065-17084 Msa1460170:intergenic 25.0%
TGTCAAATTGTGTGAACATA+AGG + tig0040705:11203-11222 None:intergenic 30.0%
GGATATTGCATATTATATGC+AGG - tig0040705:11449-11468 Msa1460170:exon 30.0%
GGATATTGCATATTATATGC+AGG - tig0040705:11449-11468 Msa1460170:exon 30.0%
AATGGAGAAATCTTTCATTG+TGG + tig0040705:11522-11541 Msa1460170:intergenic 30.0%
GACAAATTTACAGTACTCTA+AGG + tig0040705:11593-11612 Msa1460170:intergenic 30.0%
!!! ATGTAGTGATGTTTGTTTTG+TGG + tig0040705:11700-11719 Msa1460170:intergenic 30.0%
! CATCACTACATAAATTTTGG+AGG - tig0040705:11709-11728 Msa1460170:CDS 30.0%
!! CATAAATTTTGGAGGGTTTT+TGG - tig0040705:11717-11736 Msa1460170:CDS 30.0%
!!! TCTTTTTCAGTTATGCTTGT+AGG - tig0040705:11762-11781 Msa1460170:CDS 30.0%
! TAATTTTCCAGAAAGTTGAG+CGG + tig0040705:11864-11883 Msa1460170:intergenic 30.0%
!!! TTACCAACACTAGGTTTTTT+TGG - tig0040705:11897-11916 Msa1460170:intron 30.0%
!!! TACCAACACTAGGTTTTTTT+GGG - tig0040705:11898-11917 Msa1460170:intron 30.0%
!! TGTGTTATCAAGTATTGATG+AGG - tig0040705:11970-11989 Msa1460170:intron 30.0%
!! TTATCAAGTATTGATGAGGA+TGG - tig0040705:11974-11993 Msa1460170:intron 30.0%
!! ACAGTTAGTTTGTAATAGAG+AGG - tig0040705:12036-12055 Msa1460170:intron 30.0%
CGCTTTCAAATAAGCTAATA+AGG + tig0040705:12074-12093 Msa1460170:intergenic 30.0%
TAATTCTAATGTATCGGACT+CGG + tig0040705:12131-12150 Msa1460170:intergenic 30.0%
! AAACTCTTTTCAGCAAGAAA+AGG + tig0040705:12226-12245 Msa1460170:intergenic 30.0%
AGAAACCAAAACTGAATTTG+AGG - tig0040705:12399-12418 Msa1460170:CDS 30.0%
! TTCATCCTCAAATTCAGTTT+TGG + tig0040705:12407-12426 Msa1460170:intergenic 30.0%
TCTAAACAAAGTAATAGCAG+AGG + tig0040705:12512-12531 Msa1460170:intergenic 30.0%
!! GATAGATTAGGTTTTGTCAT+TGG - tig0040705:12765-12784 Msa1460170:intron 30.0%
! TCAGATTTGAAACATCGTAT+AGG + tig0040705:13083-13102 Msa1460170:intergenic 30.0%
AATCTTTAATTAGTGCCCTA+AGG - tig0040705:13102-13121 Msa1460170:intron 30.0%
AATGATAACCACTATCCTTA+GGG + tig0040705:13120-13139 Msa1460170:intergenic 30.0%
AAATGATAACCACTATCCTT+AGG + tig0040705:13121-13140 Msa1460170:intergenic 30.0%
AAATCTCATATTCATAGCTC+TGG + tig0040705:13364-13383 Msa1460170:intergenic 30.0%
AGTCTATCATAACGCATATA+GGG + tig0040705:13449-13468 Msa1460170:intergenic 30.0%
AAGTCTATCATAACGCATAT+AGG + tig0040705:13450-13469 Msa1460170:intergenic 30.0%
!! TCGTTTATTTTCTGTGTGTA+TGG - tig0040705:13498-13517 Msa1460170:intron 30.0%
!! CGTTTATTTTCTGTGTGTAT+GGG - tig0040705:13499-13518 Msa1460170:intron 30.0%
!!! ACATTTTTTTTCTTCTGCTC+TGG - tig0040705:13527-13546 Msa1460170:intron 30.0%
!!! CGCATATAATTTTTTGAGTG+TGG + tig0040705:13699-13718 Msa1460170:intergenic 30.0%
AATTTCAAGGCATATTGTTC+AGG - tig0040705:13955-13974 Msa1460170:intron 30.0%
!!! GTTTTTTTTTTAGCAAGGGT+CGG + tig0040705:14045-14064 Msa1460170:intergenic 30.0%
CATATTTACTGTCAATCTTG+AGG + tig0040705:14111-14130 Msa1460170:intergenic 30.0%
CTCAAGATTGACAGTAAATA+TGG - tig0040705:14109-14128 Msa1460170:intron 30.0%
! ACGTTCAAAGATGATTTTTC+CGG - tig0040705:14373-14392 Msa1460170:intron 30.0%
CAAATTCTAGATTCTTCCAT+TGG + tig0040705:14439-14458 Msa1460170:intergenic 30.0%
! AAGGCTAAGATTTTTGACAT+CGG + tig0040705:14694-14713 Msa1460170:intergenic 30.0%
AGAAATTCTTCACGGAATTA+TGG - tig0040705:14749-14768 Msa1460170:intron 30.0%
!! ATAACTTGCTGAGAAAAACT+AGG - tig0040705:15047-15066 Msa1460170:intron 30.0%
!! TAACTTGCTGAGAAAAACTA+GGG - tig0040705:15048-15067 Msa1460170:intron 30.0%
AAAGGAGAAAGATAGAACAT+AGG + tig0040705:15240-15259 Msa1460170:intergenic 30.0%
TATATTATGGCTCAATTGAC+TGG - tig0040705:15356-15375 Msa1460170:intron 30.0%
TTCTATCTATCCCTTAGTTA+GGG - tig0040705:15406-15425 Msa1460170:intron 30.0%
TGACATTTGAACAATGAGAA+AGG + tig0040705:15523-15542 Msa1460170:intergenic 30.0%
CAAATGTCATATAATGTAGG+AGG - tig0040705:15534-15553 Msa1460170:intron 30.0%
TCGATCAAATGTTGAGAAAT+TGG - tig0040705:15648-15667 Msa1460170:CDS 30.0%
! TGAAACAACTTCATCCATTT+TGG - tig0040705:15705-15724 Msa1460170:CDS 30.0%
CAGAATTCAGAATTGTATTG+TGG + tig0040705:15987-16006 Msa1460170:intergenic 30.0%
!!! TTTTAGAATGTTGTCTTCCT+CGG + tig0040705:16514-16533 Msa1460170:intergenic 30.0%
! TGAACTAAACTTTGAAGATG+AGG - tig0040705:16602-16621 Msa1460170:five_prime_UTR 30.0%
! GAACTAAACTTTGAAGATGA+GGG - tig0040705:16603-16622 Msa1460170:five_prime_UTR 30.0%
! TCCGCTATTTCATAAAAAAG+CGG - tig0040705:16653-16672 Msa1460170:five_prime_UTR 30.0%
!!! TCCGCTTTTTTATGAAATAG+CGG + tig0040705:16657-16676 Msa1460170:intergenic 30.0%
AAGTGTGAAAGCAGATTATT+TGG - tig0040705:16704-16723 Msa1460170:five_prime_UTR 30.0%
! AATTTCAGAATGTGTTGGTA+TGG + tig0040705:17060-17079 Msa1460170:intergenic 30.0%
!!! CACATTCTGAAATTTTTCAG+TGG - tig0040705:17066-17085 Msa1460170:five_prime_UTR 30.0%
!!! ATTCTGAAATTTTTCAGTGG+AGG - tig0040705:17069-17088 Msa1460170:five_prime_UTR 30.0%
AACTAGCAAACAAAGTTCAG+AGG + tig0040705:11374-11393 Msa1460170:intergenic 35.0%
! CTTTGTTTGCTAGTTTGAAG+AGG - tig0040705:11379-11398 Msa1460170:three_prime_UTR 35.0%
! TTTGCTAGTTTGAAGAGGAA+GGG - tig0040705:11384-11403 Msa1460170:three_prime_UTR 35.0%
!! AGTACTCTAAGGCTTTGTTT+GGG + tig0040705:11582-11601 Msa1460170:intergenic 35.0%
!!! GTGATGTTTGTTTTGTGGTT+TGG + tig0040705:11695-11714 Msa1460170:intergenic 35.0%
ATGCAGTTAGTGAGTATCAA+TGG - tig0040705:11786-11805 Msa1460170:CDS 35.0%
! TCAGAAATTTATGGAGCATC+AGG + tig0040705:11817-11836 Msa1460170:intergenic 35.0%
TGATGCTCCATAAATTTCTG+AGG - tig0040705:11816-11835 Msa1460170:CDS 35.0%
AAGACAGCCTCAGAAATTTA+TGG + tig0040705:11826-11845 Msa1460170:intergenic 35.0%
!! AACAACTTGTTACCAACACT+AGG - tig0040705:11888-11907 Msa1460170:intron 35.0%
AACCCAAAAAAACCTAGTGT+TGG + tig0040705:11903-11922 Msa1460170:intergenic 35.0%
!!! TTTTGGGTTATCTTTGTCTG+TGG - tig0040705:11914-11933 Msa1460170:intron 35.0%
!! AAGTATTGATGAGGATGGAA+GGG - tig0040705:11979-11998 Msa1460170:intron 35.0%
!! TAGCTTATTTGAAAGCGTTG+AGG - tig0040705:12077-12096 Msa1460170:intron 35.0%
!!! GAAAAGAGTTTTGTTCACGT+TGG - tig0040705:12235-12254 Msa1460170:CDS 35.0%
ACAACTTCTACTTTATCCAC+AGG + tig0040705:12352-12371 Msa1460170:intergenic 35.0%
TTACATCAGCTTCTGAATCT+TGG + tig0040705:12432-12451 Msa1460170:intergenic 35.0%
GTTCTTATTGATATCAGCAG+CGG - tig0040705:12658-12677 Msa1460170:CDS 35.0%
GTTTCCAATACAGAAAAGAC+AGG + tig0040705:12811-12830 Msa1460170:intergenic 35.0%
CATTTCAGACTACAATATGC+TGG - tig0040705:13312-13331 Msa1460170:intron 35.0%
CAATATGCTGGACAGTAATT+AGG - tig0040705:13324-13343 Msa1460170:intron 35.0%
TTCACTAGGACTAGAAAACT+CGG + tig0040705:13651-13670 Msa1460170:intergenic 35.0%
GAAACTTTACAAGGCAGTAA+AGG - tig0040705:13727-13746 Msa1460170:intron 35.0%
CAGCATCATAGACTGTTTAT+TGG + tig0040705:13769-13788 Msa1460170:intergenic 35.0%
ATGCAGCCCAAAAATATTTG+GGG + tig0040705:13881-13900 Msa1460170:intergenic 35.0%
CATGCAGCCCAAAAATATTT+GGG + tig0040705:13882-13901 Msa1460170:intergenic 35.0%
TCATGCAGCCCAAAAATATT+TGG + tig0040705:13883-13902 Msa1460170:intergenic 35.0%
!!! AAATATTTTTGGGCTGCATG+AGG - tig0040705:13882-13901 Msa1460170:intron 35.0%
!!! AATATTTTTGGGCTGCATGA+GGG - tig0040705:13883-13902 Msa1460170:intron 35.0%
!!! GATAGGTGTTTTGATATCCA+TGG + tig0040705:14226-14245 Msa1460170:intergenic 35.0%
GGAAAAATCATCTTTGAACG+TGG + tig0040705:14374-14393 Msa1460170:intergenic 35.0%
! TTTACCCATGGAGTATTCTT+TGG + tig0040705:14470-14489 Msa1460170:intergenic 35.0%
!! TTTATGATGTTGGCCTTGTA+TGG + tig0040705:14493-14512 Msa1460170:intergenic 35.0%
CAAGGCCAACATCATAAAAA+AGG - tig0040705:14495-14514 Msa1460170:intron 35.0%
GACTGTTTGGATAAGATTCA+AGG + tig0040705:14592-14611 Msa1460170:intergenic 35.0%
AGTGGTGAAGAAATTCTTCA+CGG - tig0040705:14741-14760 Msa1460170:intron 35.0%
ATTCTTCACGGAATTATGGA+TGG - tig0040705:14753-14772 Msa1460170:intron 35.0%
! CAATCATTTTCCAGAGAGAA+CGG - tig0040705:14806-14825 Msa1460170:intron 35.0%
AAACATCAAGCAATGGCTTA+GGG + tig0040705:14887-14906 Msa1460170:intergenic 35.0%
!! TCCAACTTGTTAGTTAAGAG+TGG - tig0040705:14934-14953 Msa1460170:intron 35.0%
TCCACTCTTAACTAACAAGT+TGG + tig0040705:14938-14957 Msa1460170:intergenic 35.0%
!! CATAGTTGGTAAAAACCAGA+CGG - tig0040705:14965-14984 Msa1460170:intron 35.0%
CAAACGAAAGATGGTGAAAA+GGG + tig0040705:15217-15236 Msa1460170:intergenic 35.0%
! GCTCAATTGACTGGTATTTT+TGG - tig0040705:15365-15384 Msa1460170:intron 35.0%
CTTCTATCTATCCCTTAGTT+AGG - tig0040705:15405-15424 Msa1460170:intron 35.0%
ATGTCATATAATGTAGGAGG+AGG - tig0040705:15537-15556 Msa1460170:intron 35.0%
TGTCATATAATGTAGGAGGA+GGG - tig0040705:15538-15557 Msa1460170:intron 35.0%
TTACCAAATTGGAGTTTGAG+AGG - tig0040705:15563-15582 Msa1460170:intron 35.0%
ATCGTCATTGAAAAAGCAAG+AGG - tig0040705:15591-15610 Msa1460170:intron 35.0%
TCGTCATTGAAAAAGCAAGA+GGG - tig0040705:15592-15611 Msa1460170:intron 35.0%
CGAAATCTGAGAAATATACC+CGG + tig0040705:15776-15795 Msa1460170:intergenic 35.0%
TTTGTAGGTTGTCACAAATG+TGG - tig0040705:15893-15912 Msa1460170:CDS 35.0%
TTGTATTGTGGTTATCACTG+AGG + tig0040705:15975-15994 Msa1460170:intergenic 35.0%
TACAATTCAGTTTGAGAGTG+AGG - tig0040705:16029-16048 Msa1460170:CDS 35.0%
! AATCGCAACAAGAGTATGTA+AGG - tig0040705:16088-16107 Msa1460170:CDS 35.0%
TCCATTCGAAAAACAAAGCA+TGG + tig0040705:16260-16279 Msa1460170:intergenic 35.0%
TTGCGCTAAACACTTCTTAT+TGG - tig0040705:16332-16351 Msa1460170:CDS 35.0%
!!! TTTTTTCTGGCACTTTGATG+TGG - tig0040705:16421-16440 Msa1460170:five_prime_UTR 35.0%
!!! CAGAAGGTTTTTTATCGCAT+TGG + tig0040705:16460-16479 Msa1460170:intergenic 35.0%
TTGAGCAATTATGGAACGTA+TGG + tig0040705:16487-16506 Msa1460170:intergenic 35.0%
ACTTTCCACTTGCTTCTTTA+AGG + tig0040705:16688-16707 Msa1460170:intergenic 35.0%
CACAAAACATGTTCACTTTG+TGG - tig0040705:16882-16901 Msa1460170:five_prime_UTR 35.0%
! ATTGTGTCTAGCCATTCTTT+TGG - tig0040705:17011-17030 Msa1460170:five_prime_UTR 35.0%
ATGTGATAGAGAGAGAGAGA+GGG + tig0040705:11238-11257 None:intergenic 40.0%
AATGTGATAGAGAGAGAGAG+AGG + tig0040705:11239-11258 None:intergenic 40.0%
! GTTTGCTAGTTTGAAGAGGA+AGG - tig0040705:11383-11402 Msa1460170:three_prime_UTR 40.0%
TAGTTTGAAGAGGAAGGGAA+AGG - tig0040705:11389-11408 Msa1460170:three_prime_UTR 40.0%
AGGAAGGGAAAGGAAAGAAT+GGG - tig0040705:11399-11418 Msa1460170:three_prime_UTR 40.0%
AGGAAAGAATGGGATGACTT+TGG - tig0040705:11409-11428 Msa1460170:three_prime_UTR 40.0%
GGAAAGAATGGGATGACTTT+GGG - tig0040705:11410-11429 Msa1460170:three_prime_UTR 40.0%
!! TTTGGGTTAGCTCAGTTTGT+AGG - tig0040705:11427-11446 Msa1460170:three_prime_UTR 40.0%
!! TTGGGTTAGCTCAGTTTGTA+GGG - tig0040705:11428-11447 Msa1460170:three_prime_UTR 40.0%
! CTTTCATTGTGGAGTATCTG+AGG + tig0040705:11511-11530 Msa1460170:intergenic 40.0%
!! CAGTACTCTAAGGCTTTGTT+TGG + tig0040705:11583-11602 Msa1460170:intergenic 40.0%
!! CAAGTATTGATGAGGATGGA+AGG - tig0040705:11978-11997 Msa1460170:intron 40.0%
CATATGCAAGGAAAGGAAGA+AGG - tig0040705:12006-12025 Msa1460170:intron 40.0%
GAATTAGACTTTGCCTCTAC+TGG - tig0040705:12145-12164 Msa1460170:CDS 40.0%
! CTCTTTTCAGCAAGAAAAGG+AGG + tig0040705:12223-12242 Msa1460170:intergenic 40.0%
CATCTGCTGCAAATTGATCA+AGG - tig0040705:12301-12320 Msa1460170:CDS 40.0%
!! ATCGTTGCTATTTCAACCTG+TGG - tig0040705:12333-12352 Msa1460170:CDS 40.0%
AGAAGTTGTAGAGTCGTTTG+AGG - tig0040705:12363-12382 Msa1460170:CDS 40.0%
TTCAGAAGCTGATGTAAGTG+TGG - tig0040705:12435-12454 Msa1460170:intron 40.0%
TCAGAAGCTGATGTAAGTGT+GGG - tig0040705:12436-12455 Msa1460170:intron 40.0%
! TCATCAACTGGTTCTTTGAC+CGG + tig0040705:12484-12503 Msa1460170:intergenic 40.0%
AAAGCTATTCCCGTGATGAT+TGG - tig0040705:12550-12569 Msa1460170:CDS 40.0%
GATTTCCTTTATACACGCTG+AGG + tig0040705:12635-12654 Msa1460170:intergenic 40.0%
CAGAAAAGACAGGAAGCAAA+AGG + tig0040705:12801-12820 Msa1460170:intergenic 40.0%
! GCTTCCTGTCTTTTCTGTAT+TGG - tig0040705:12804-12823 Msa1460170:intron 40.0%
TTGGCATAACAGTAAGAGCA+AGG - tig0040705:12971-12990 Msa1460170:intron 40.0%
AATTAGTGCCCTAAGGATAG+TGG - tig0040705:13109-13128 Msa1460170:intron 40.0%
CTACTCAGAATGGTATTCAG+TGG + tig0040705:13157-13176 Msa1460170:intergenic 40.0%
CCATCTACTACTACTCAGAA+TGG + tig0040705:13167-13186 Msa1460170:intergenic 40.0%
CCATTCTGAGTAGTAGTAGA+TGG - tig0040705:13164-13183 Msa1460170:intron 40.0%
GGGTATTTAGCGTACTATCA+TGG - tig0040705:13585-13604 Msa1460170:intron 40.0%
TTAGCGTACTATCATGGAGT+AGG - tig0040705:13591-13610 Msa1460170:intron 40.0%
GGCAGAGAAGAAACTTTACA+AGG - tig0040705:13718-13737 Msa1460170:intron 40.0%
! TGGTGTGCCCCAAATATTTT+TGG - tig0040705:13871-13890 Msa1460170:intron 40.0%
! GGTGTGCCCCAAATATTTTT+GGG - tig0040705:13872-13891 Msa1460170:intron 40.0%
CAAAACACCTATCGATAGTG+TGG - tig0040705:14233-14252 Msa1460170:intron 40.0%
GACGAGATTTACCATGCTTT+CGG - tig0040705:14284-14303 Msa1460170:intron 40.0%
ACGAGATTTACCATGCTTTC+GGG - tig0040705:14285-14304 Msa1460170:intron 40.0%
! GCTTTTCGAAGTGGTGAATA+TGG + tig0040705:14316-14335 Msa1460170:intergenic 40.0%
GTCTACTTTGTTGCGTATAC+CGG + tig0040705:14395-14414 Msa1460170:intergenic 40.0%
GACATTGCAGAGTTGAAAGT+AGG - tig0040705:14412-14431 Msa1460170:intron 40.0%
AGAGTTGAAAGTAGGTCCAA+TGG - tig0040705:14420-14439 Msa1460170:intron 40.0%
ACGAACCAAAGAATACTCCA+TGG - tig0040705:14462-14481 Msa1460170:intron 40.0%
CGAACCAAAGAATACTCCAT+GGG - tig0040705:14463-14482 Msa1460170:intron 40.0%
TTCTCGCTGTTCATATTCCT+TGG - tig0040705:14519-14538 Msa1460170:intron 40.0%
CAAAATCTCATGAGGGTTGT+TGG + tig0040705:14643-14662 Msa1460170:intergenic 40.0%
! CAACAACCCTCATGAGATTT+TGG - tig0040705:14641-14660 Msa1460170:CDS 40.0%
GGTTTGCCAAAATCTCATGA+GGG + tig0040705:14650-14669 Msa1460170:intergenic 40.0%
AGGTTTGCCAAAATCTCATG+AGG + tig0040705:14651-14670 Msa1460170:intergenic 40.0%
!! TCATGAGATTTTGGCAAACC+TGG - tig0040705:14650-14669 Msa1460170:CDS 40.0%
TGATACGAGAAGGTTATACC+AGG + tig0040705:14671-14690 Msa1460170:intergenic 40.0%
TTGTGAGACTGTTTGGAAGA+AGG + tig0040705:14713-14732 Msa1460170:intergenic 40.0%
! TTGTCACTTGTGAGACTGTT+TGG + tig0040705:14720-14739 Msa1460170:intergenic 40.0%
AATCGATGTTCTTGGTGAGA+TGG - tig0040705:14845-14864 Msa1460170:intron 40.0%
CAAACATCAAGCAATGGCTT+AGG + tig0040705:14888-14907 Msa1460170:intergenic 40.0%
GGTCATCAAACATCAAGCAA+TGG + tig0040705:14894-14913 Msa1460170:intergenic 40.0%
TGATGACCATGAGTGATAGT+TGG - tig0040705:14906-14925 Msa1460170:intron 40.0%
ATCTGATTCAGCCATGAGTT+AGG - tig0040705:14996-15015 Msa1460170:intron 40.0%
TCTGATTCAGCCATGAGTTA+GGG - tig0040705:14997-15016 Msa1460170:intron 40.0%
TTTCTCTCTTCCCTAACTCA+TGG + tig0040705:15010-15029 Msa1460170:intergenic 40.0%
TTAGGGAAGAGAGAAATGTC+TGG - tig0040705:15014-15033 Msa1460170:intron 40.0%
GCAAACGAAAGATGGTGAAA+AGG + tig0040705:15218-15237 Msa1460170:intergenic 40.0%
GAACATAGGCAAACGAAAGA+TGG + tig0040705:15226-15245 Msa1460170:intergenic 40.0%
TATCTATCCCTTAGTTAGGG+TGG - tig0040705:15409-15428 Msa1460170:intron 40.0%
ACAATTGCCACCCTAACTAA+GGG + tig0040705:15419-15438 Msa1460170:intergenic 40.0%
AACAATTGCCACCCTAACTA+AGG + tig0040705:15420-15439 Msa1460170:intergenic 40.0%
CTTCCTCTCAAACTCCAATT+TGG + tig0040705:15569-15588 Msa1460170:intergenic 40.0%
ATTGAAAAAGCAAGAGGGTG+AGG - tig0040705:15597-15616 Msa1460170:intron 40.0%
! AGTCTGATTTGATAAGCCTG+CGG - tig0040705:15671-15690 Msa1460170:CDS 40.0%
CAAATGTGGAGGATAATGCA+TGG - tig0040705:15907-15926 Msa1460170:CDS 40.0%
TTGAGAGTGAGGCTTCTTAT+TGG - tig0040705:16040-16059 Msa1460170:CDS 40.0%
AAGCTGAATCCACTTACTGA+GGG + tig0040705:16115-16134 Msa1460170:intergenic 40.0%
TAAGCTGAATCCACTTACTG+AGG + tig0040705:16116-16135 Msa1460170:intergenic 40.0%
CTAAGGAATGGCAATGAAAG+CGG - tig0040705:16144-16163 Msa1460170:CDS 40.0%
!! AGGGTAAGAAGTACCTTATC+TGG + tig0040705:16228-16247 Msa1460170:intergenic 40.0%
!!! GCCATGCTTTGTTTTTCGAA+TGG - tig0040705:16256-16275 Msa1460170:CDS 40.0%
TGGAACGTATGGATAACAGA+AGG + tig0040705:16476-16495 Msa1460170:intergenic 40.0%
ACGTTCCATAATTGCTCAAC+AGG - tig0040705:16488-16507 Msa1460170:five_prime_UTR 40.0%
AACTTGAAAGAAAGTTGCGG+AGG - tig0040705:16544-16563 Msa1460170:five_prime_UTR 40.0%
ATGAAGGTAATATAAGCCCC+AGG - tig0040705:16628-16647 Msa1460170:five_prime_UTR 40.0%
!! TTATGAAATAGCGGATGCCT+GGG + tig0040705:16648-16667 Msa1460170:intergenic 40.0%
!! TTTATGAAATAGCGGATGCC+TGG + tig0040705:16649-16668 Msa1460170:intergenic 40.0%
AGAAGCCTTAAAGAAGCAAG+TGG - tig0040705:16680-16699 Msa1460170:five_prime_UTR 40.0%
! TCTGAGGTTATCAAGAGTCA+TGG + tig0040705:16751-16770 Msa1460170:intergenic 40.0%
AATAGCCTCAATTGCTTGAG+AGG + tig0040705:16823-16842 Msa1460170:intergenic 40.0%
GCCAATAGAATGCAATGTCT+TGG - tig0040705:16856-16875 Msa1460170:five_prime_UTR 40.0%
GCCAAGACATTGCATTCTAT+TGG + tig0040705:16860-16879 Msa1460170:intergenic 40.0%
ATGTTCACTTTGTGGTGCTT+TGG - tig0040705:16890-16909 Msa1460170:five_prime_UTR 40.0%
TGTTGGTATGGAGAGTTAGA+AGG + tig0040705:17048-17067 Msa1460170:intergenic 40.0%
GAGGAAGGGAAAGGAAAGAA+TGG - tig0040705:11398-11417 Msa1460170:three_prime_UTR 45.0%
CATATTATATGCAGGAGCCG+TGG - tig0040705:11479-11498 Msa1460170:CDS 45.0%
! AGTATCTGAGGTTCGAACCA+CGG + tig0040705:11499-11518 Msa1460170:intergenic 45.0%
!! AGGCTTTGTTTGGGAGGATA+GGG + tig0040705:11573-11592 Msa1460170:intergenic 45.0%
!! AAGGCTTTGTTTGGGAGGAT+AGG + tig0040705:11574-11593 Msa1460170:intergenic 45.0%
!! ACTCTAAGGCTTTGTTTGGG+AGG + tig0040705:11579-11598 Msa1460170:intergenic 45.0%
!! TCTGAGGCTGTCTTTTCTCT+AGG - tig0040705:11832-11851 Msa1460170:CDS 45.0%
ATTGATGAGGATGGAAGGGT+TGG - tig0040705:11983-12002 Msa1460170:intron 45.0%
!! TTGAAAGCGTTGAGGAACAC+CGG - tig0040705:12085-12104 Msa1460170:intron 45.0%
AGTTGTAGAGTCGTTTGAGG+AGG - tig0040705:12366-12385 Msa1460170:CDS 45.0%
AGTCGTTTGAGGAGGAGAAT+TGG - tig0040705:12374-12393 Msa1460170:CDS 45.0%
GTCGTTTGAGGAGGAGAATT+GGG - tig0040705:12375-12394 Msa1460170:CDS 45.0%
GCAGAGGAACTATCATCAAC+TGG + tig0040705:12496-12515 Msa1460170:intergenic 45.0%
TTATACACGCTGAGGCTTTC+AGG + tig0040705:12627-12646 Msa1460170:intergenic 45.0%
GAAAGCCTCAGCGTGTATAA+AGG - tig0040705:12627-12646 Msa1460170:CDS 45.0%
CACGACACGAAGTCTTACTT+GGG + tig0040705:12717-12736 Msa1460170:intergenic 45.0%
ACACGACACGAAGTCTTACT+TGG + tig0040705:12718-12737 Msa1460170:intergenic 45.0%
AGACAGGAAGCAAAAGGTCA+TGG + tig0040705:12795-12814 Msa1460170:intergenic 45.0%
TGCTCTGGCATGTTCTTTGT+AGG - tig0040705:13542-13561 Msa1460170:intron 45.0%
CAAGAGAACCAGTTCTGCAA+GGG - tig0040705:13565-13584 Msa1460170:intron 45.0%
GCTAAATACCCTTGCAGAAC+TGG + tig0040705:13576-13595 Msa1460170:intergenic 45.0%
AGAAAACTCGGCGTCATCTT+TGG + tig0040705:13639-13658 Msa1460170:intergenic 45.0%
CAATGTAACACAGACTGCAC+AGG + tig0040705:14185-14204 Msa1460170:intergenic 45.0%
CTGTGCAGTCTGTGTTACAT+TGG - tig0040705:14183-14202 Msa1460170:intron 45.0%
! TGTGTTACATTGGTTGTCCG+AGG - tig0040705:14193-14212 Msa1460170:intron 45.0%
! TTACATTGGTTGTCCGAGGA+GGG - tig0040705:14197-14216 Msa1460170:intron 45.0%
TGTGACCATTGCCACATGAT+CGG + tig0040705:14259-14278 Msa1460170:intergenic 45.0%
ATGTGGCAATGGTCACACTT+AGG - tig0040705:14262-14281 Msa1460170:intron 45.0%
CTCCATGGGTAAACCATACA+AGG - tig0040705:14477-14496 Msa1460170:intron 45.0%
CGCTGTTCATATTCCTTGGT+AGG - tig0040705:14523-14542 Msa1460170:intron 45.0%
AATGAAATCATGCCTCCTGC+TGG + tig0040705:14553-14572 Msa1460170:intergenic 45.0%
CTTATCCAAACAGTCAGCCA+TGG - tig0040705:14597-14616 Msa1460170:CDS 45.0%
! TAGACGACTTGATGGTTCCA+TGG + tig0040705:14617-14636 Msa1460170:intergenic 45.0%
ATGGAACCATCAAGTCGTCT+AGG - tig0040705:14616-14635 Msa1460170:CDS 45.0%
TGGAACCATCAAGTCGTCTA+GGG - tig0040705:14617-14636 Msa1460170:CDS 45.0%
TTGACATCGGTGATACGAGA+AGG + tig0040705:14681-14700 Msa1460170:intergenic 45.0%
AGTCTCACAAGTGACAAGAG+TGG - tig0040705:14723-14742 Msa1460170:CDS 45.0%
GGTCACAGAATCGATGTTCT+TGG - tig0040705:14837-14856 Msa1460170:intron 45.0%
TGACCATGAGTGATAGTTGG+TGG - tig0040705:14909-14928 Msa1460170:intron 45.0%
AAGCCACCAACTATCACTCA+TGG + tig0040705:14915-14934 Msa1460170:intergenic 45.0%
TTGGTAAAAACCAGACGGTG+TGG - tig0040705:14970-14989 Msa1460170:intron 45.0%
GGAGGAGGGAATTACCAAAT+TGG - tig0040705:15552-15571 Msa1460170:intron 45.0%
! AGAGGGTGAGGACATTGATT+TGG - tig0040705:15609-15628 Msa1460170:CDS 45.0%
! TGAAGAGCTTTTACCCCAGT+TGG - tig0040705:15738-15757 Msa1460170:CDS 45.0%
GCAGTTAATGCAACCAACTG+GGG + tig0040705:15754-15773 Msa1460170:intergenic 45.0%
GGCAGTTAATGCAACCAACT+GGG + tig0040705:15755-15774 Msa1460170:intergenic 45.0%
CAGTTGGTTGCATTAACTGC+CGG - tig0040705:15754-15773 Msa1460170:CDS 45.0%
AGTTGGTTGCATTAACTGCC+GGG - tig0040705:15755-15774 Msa1460170:CDS 45.0%
GTAGGTTGTCACAAATGTGG+AGG - tig0040705:15896-15915 Msa1460170:CDS 45.0%
ATGTAAGGACCCTCAGTAAG+TGG - tig0040705:16103-16122 Msa1460170:CDS 45.0%
TTCAGCTTACCAACTGCCTA+AGG - tig0040705:16127-16146 Msa1460170:CDS 45.0%
CTTACCAACTGCCTAAGGAA+TGG - tig0040705:16132-16151 Msa1460170:CDS 45.0%
ATTGCCATTCCTTAGGCAGT+TGG + tig0040705:16139-16158 Msa1460170:intergenic 45.0%
CGCTTTCATTGCCATTCCTT+AGG + tig0040705:16146-16165 Msa1460170:intergenic 45.0%
!! GCTTGATGGGTTACCAGATA+AGG - tig0040705:16212-16231 Msa1460170:CDS 45.0%
TGGCACTTTGATGTGGTTAC+AGG - tig0040705:16428-16447 Msa1460170:five_prime_UTR 45.0%
CACTTTGATGTGGTTACAGG+AGG - tig0040705:16431-16450 Msa1460170:five_prime_UTR 45.0%
TTTGATGTGGTTACAGGAGG+TGG - tig0040705:16434-16453 Msa1460170:five_prime_UTR 45.0%
! TTTTCTCTGCATCTCGTCCA+GGG + tig0040705:16580-16599 Msa1460170:intergenic 45.0%
! TTTTTCTCTGCATCTCGTCC+AGG + tig0040705:16581-16600 Msa1460170:intergenic 45.0%
TTTGAAGATGAGGGCGATGA+AGG - tig0040705:16612-16631 Msa1460170:five_prime_UTR 45.0%
!! TATGAAATAGCGGATGCCTG+GGG + tig0040705:16647-16666 Msa1460170:intergenic 45.0%
!! GATGTGGAAGTCTAGTTCTG+AGG + tig0040705:16767-16786 Msa1460170:intergenic 45.0%
ATCAGTGTCACGAAGAGATG+TGG + tig0040705:16783-16802 Msa1460170:intergenic 45.0%
ACATCTCTTCGTGACACTGA+TGG - tig0040705:16782-16801 Msa1460170:five_prime_UTR 45.0%
TGCTTCCTCTCAAGCAATTG+AGG - tig0040705:16815-16834 Msa1460170:intron 45.0%
! TCACTTTGTGGTGCTTTGGA+TGG - tig0040705:16894-16913 Msa1460170:five_prime_UTR 45.0%
TGCTTGTGCTTCATGCTGAT+AGG - tig0040705:16926-16945 Msa1460170:five_prime_UTR 45.0%
!! ATTACATTAAAAAAAAAAAA+AGG + tig0040705:15130-15149 Msa1460170:intergenic 5.0%
!!! AAGATTAATTAAAATATTTT+TGG + tig0040705:15179-15198 Msa1460170:intergenic 5.0%
!!! AAAAATATTTTAATTAATCT+TGG - tig0040705:15178-15197 Msa1460170:intron 5.0%
! TGGAAGGGTTGGCATATGCA+AGG - tig0040705:11994-12013 Msa1460170:intron 50.0%
! GGGTTGGCATATGCAAGGAA+AGG - tig0040705:11999-12018 Msa1460170:intron 50.0%
TCAGCAAGAAAAGGAGGCAG+CGG + tig0040705:12217-12236 Msa1460170:intergenic 50.0%
AGTGTGGGAAGATCACGTAG+CGG - tig0040705:12451-12470 Msa1460170:intron 50.0%
CCGCTTCTACCAATCATCAC+GGG + tig0040705:12562-12581 Msa1460170:intergenic 50.0%
CCCGTGATGATTGGTAGAAG+CGG - tig0040705:12559-12578 Msa1460170:CDS 50.0%
CCCGCTTCTACCAATCATCA+CGG + tig0040705:12563-12582 Msa1460170:intergenic 50.0%
CCGTGATGATTGGTAGAAGC+GGG - tig0040705:12560-12579 Msa1460170:CDS 50.0%
TGGTAGAAGCGGGAGAACAT+TGG - tig0040705:12570-12589 Msa1460170:CDS 50.0%
TAGAAGCGGGAGAACATTGG+AGG - tig0040705:12573-12592 Msa1460170:CDS 50.0%
AGAAGCGGGAGAACATTGGA+GGG - tig0040705:12574-12593 Msa1460170:CDS 50.0%
ACTCTTCTGCGGCAGAATTC+TGG - tig0040705:12685-12704 Msa1460170:CDS 50.0%
CTTATGCTGCGAGTGAGCTT+TGG - tig0040705:12952-12971 Msa1460170:intron 50.0%
! CACTGATTAGCAAGACCCTG+GGG + tig0040705:13014-13033 Msa1460170:intergenic 50.0%
!! GCACTGATTAGCAAGACCCT+GGG + tig0040705:13015-13034 Msa1460170:intergenic 50.0%
!! TGCACTGATTAGCAAGACCC+TGG + tig0040705:13016-13035 Msa1460170:intergenic 50.0%
GCAAGAGAACCAGTTCTGCA+AGG - tig0040705:13564-13583 Msa1460170:intron 50.0%
CTAGTCCTAGTGAACCATGC+AGG - tig0040705:13657-13676 Msa1460170:intron 50.0%
!! CAGAAGTGCCGAAAGTGTGA+TGG - tig0040705:14133-14152 Msa1460170:intron 50.0%
!! AAGTGCCGAAAGTGTGATGG+TGG - tig0040705:14136-14155 Msa1460170:intron 50.0%
! GTTACATTGGTTGTCCGAGG+AGG - tig0040705:14196-14215 Msa1460170:intron 50.0%
ATATCCATGGTCACCCTCCT+CGG + tig0040705:14213-14232 Msa1460170:intergenic 50.0%
TGATCGGCCACACTATCGAT+AGG + tig0040705:14243-14262 Msa1460170:intergenic 50.0%
TATGGTCGATCCCGAAAGCA+TGG + tig0040705:14298-14317 Msa1460170:intergenic 50.0%
TTCACCACTTCGAAAAGCCG+AGG - tig0040705:14318-14337 Msa1460170:intron 50.0%
! GGCCTTGTATGGTTTACCCA+TGG + tig0040705:14482-14501 Msa1460170:intergenic 50.0%
TGGTTCCATGGCTGACTGTT+TGG + tig0040705:14605-14624 Msa1460170:intergenic 50.0%
CCAGAGAGAACGGTCTGATT+CGG - tig0040705:14816-14835 Msa1460170:intron 50.0%
GAGTGGAGCAGTGACATAGT+TGG - tig0040705:14951-14970 Msa1460170:intron 50.0%
GTAAAAACCAGACGGTGTGG+AGG - tig0040705:14973-14992 Msa1460170:intron 50.0%
! CTGATTTGATAAGCCTGCGG+CGG - tig0040705:15674-15693 Msa1460170:CDS 50.0%
CGGCAGTTAATGCAACCAAC+TGG + tig0040705:15756-15775 Msa1460170:intergenic 50.0%
AGATCAGTGCCTGTGACTGA+TGG + tig0040705:15936-15955 Msa1460170:intergenic 50.0%
ACTGAGGTTACTCAGCTGCT+GGG + tig0040705:15959-15978 Msa1460170:intergenic 50.0%
CTCGGCCTGTTGAGCAATTA+TGG + tig0040705:16496-16515 Msa1460170:intergenic 50.0%
CATAATTGCTCAACAGGCCG+AGG - tig0040705:16494-16513 Msa1460170:five_prime_UTR 50.0%
GTTTGGGAGGATAGGGCTTC+TGG + tig0040705:11566-11585 Msa1460170:intergenic 55.0%
GAACTGCCTAAGTGTGGCAC+CGG + tig0040705:12107-12126 Msa1460170:intergenic 55.0%
CTCGGTGAACTGCCTAAGTG+TGG + tig0040705:12113-12132 Msa1460170:intergenic 55.0%
AGGTGGTAAATCAGGCGGTG+GGG + tig0040705:12191-12210 Msa1460170:intergenic 55.0%
GAGGTGGTAAATCAGGCGGT+GGG + tig0040705:12192-12211 Msa1460170:intergenic 55.0%
GTGTGGGAAGATCACGTAGC+GGG - tig0040705:12452-12471 Msa1460170:intron 55.0%
! ATCACGTAGCGGGAAGCAAC+CGG - tig0040705:12462-12481 Msa1460170:intron 55.0%
GCAGCGGAGATACTCTTCTG+CGG - tig0040705:12674-12693 Msa1460170:CDS 55.0%
ACATATACTCCCCCTCCCCA+GGG - tig0040705:12996-13015 Msa1460170:intron 55.0%
ATTAGCAAGACCCTGGGGAG+GGG + tig0040705:13009-13028 Msa1460170:intergenic 55.0%
GATTAGCAAGACCCTGGGGA+GGG + tig0040705:13010-13029 Msa1460170:intergenic 55.0%
TGATTAGCAAGACCCTGGGG+AGG + tig0040705:13011-13030 Msa1460170:intergenic 55.0%
GGCGTCATCTTTGGTGAACG+TGG + tig0040705:13630-13649 Msa1460170:intergenic 55.0%
TCCTAGTGAACCATGCAGGC+CGG - tig0040705:13661-13680 Msa1460170:intron 55.0%
AGTGTGGCACAATGAGCTCC+CGG + tig0040705:13683-13702 Msa1460170:intergenic 55.0%
GGCTGCCACCATCACACTTT+CGG + tig0040705:14144-14163 Msa1460170:intergenic 55.0%
AGGTAGCTTCCTCTCAGACG+CGG + tig0040705:14165-14184 Msa1460170:intergenic 55.0%
CGATAGTGTGGCCGATCATG+TGG - tig0040705:14245-14264 Msa1460170:intron 55.0%
TGTGGCCGATCATGTGGCAA+TGG - tig0040705:14251-14270 Msa1460170:intron 55.0%
! TCTGCCTCGGCTTTTCGAAG+TGG + tig0040705:14325-14344 Msa1460170:intergenic 55.0%
ACTTCGAAAAGCCGAGGCAG+AGG - tig0040705:14324-14343 Msa1460170:intron 55.0%
!! ACCTGTTGACTCCTCTGCCT+CGG + tig0040705:14338-14357 Msa1460170:intergenic 55.0%
GTTGGCCCTAGACGACTTGA+TGG + tig0040705:14625-14644 Msa1460170:intergenic 55.0%
CCGAATCAGACCGTTCTCTC+TGG + tig0040705:14819-14838 Msa1460170:intergenic 55.0%
ATCAGATCCTCCACACCGTC+TGG + tig0040705:14983-15002 Msa1460170:intergenic 55.0%
GCATGGATGCCATCAGTCAC+AGG - tig0040705:15924-15943 Msa1460170:CDS 55.0%
CACTGAGGTTACTCAGCTGC+TGG + tig0040705:15960-15979 Msa1460170:intergenic 55.0%
AGTGGGAGCTTGGGCTTGAT+GGG - tig0040705:16199-16218 Msa1460170:CDS 55.0%
CAAAGCATGGCGCGTTGTGA+GGG + tig0040705:16247-16266 Msa1460170:intergenic 55.0%
ACAAAGCATGGCGCGTTGTG+AGG + tig0040705:16248-16267 Msa1460170:intergenic 55.0%
GCGACTGCCGCTCAACTTTC+TGG - tig0040705:11854-11873 Msa1460170:intron 60.0%
!! GGAACACCGGTGCCACACTT+AGG - tig0040705:12098-12117 Msa1460170:CDS 60.0%
AATCAGGCGGTGGGGAAGGT+GGG + tig0040705:12183-12202 Msa1460170:intergenic 60.0%
AAATCAGGCGGTGGGGAAGG+TGG + tig0040705:12184-12203 Msa1460170:intergenic 60.0%
GGTAAATCAGGCGGTGGGGA+AGG + tig0040705:12187-12206 Msa1460170:intergenic 60.0%
GGAGGTGGTAAATCAGGCGG+TGG + tig0040705:12193-12212 Msa1460170:intergenic 60.0%
GGCGGAGGTGGTAAATCAGG+CGG + tig0040705:12196-12215 Msa1460170:intergenic 60.0%
AGCGGCGGAGGTGGTAAATC+AGG + tig0040705:12199-12218 Msa1460170:intergenic 60.0%
GCAAGAAAAGGAGGCAGCGG+CGG + tig0040705:12214-12233 Msa1460170:intergenic 60.0%
! CTGGGGAGGGGGAGTATATG+TGG + tig0040705:12997-13016 Msa1460170:intergenic 60.0%
CACATATACTCCCCCTCCCC+AGG - tig0040705:12995-13014 Msa1460170:intron 60.0%
TTAGCAAGACCCTGGGGAGG+GGG + tig0040705:13008-13027 Msa1460170:intergenic 60.0%
CCTAGTGAACCATGCAGGCC+GGG - tig0040705:13662-13681 Msa1460170:intron 60.0%
TTGTCCGAGGAGGGTGACCA+TGG - tig0040705:14206-14225 Msa1460170:intron 60.0%
TTTCACTGATGCACCGCCGC+AGG + tig0040705:15690-15709 Msa1460170:intergenic 60.0%
CAGTGGGAGCTTGGGCTTGA+TGG - tig0040705:16198-16217 Msa1460170:CDS 60.0%
GGCTTCAGGCAGGCCAGTAG+AGG + tig0040705:12161-12180 Msa1460170:intergenic 65.0%
ATCAGGCGGTGGGGAAGGTG+GGG + tig0040705:12182-12201 Msa1460170:intergenic 65.0%
AGAAAAGGAGGCAGCGGCGG+AGG + tig0040705:12211-12230 Msa1460170:intergenic 65.0%
CCCGGCCTGCATGGTTCACT+AGG + tig0040705:13665-13684 Msa1460170:intergenic 65.0%
CAATGAGCTCCCGGCCTGCA+TGG + tig0040705:13674-13693 Msa1460170:intergenic 65.0%
GCCGAGGCAGAGGAGTCAAC+AGG - tig0040705:14334-14353 Msa1460170:intron 65.0%
TCCTTGGTAGGCGCTCCAGC+AGG - tig0040705:14535-14554 Msa1460170:intron 65.0%
! TCCTGCTGGAGCGCCTACCA+AGG + tig0040705:14539-14558 Msa1460170:intergenic 65.0%
TTGGTAGGCGCTCCAGCAGG+AGG - tig0040705:14538-14557 Msa1460170:intron 65.0%
GGGAAGGTGGGGCTTCAGGC+AGG + tig0040705:12171-12190 Msa1460170:intergenic 70.0%
GGTGGGGAAGGTGGGGCTTC+AGG + tig0040705:12175-12194 Msa1460170:intergenic 70.0%
AAAGGAGGCAGCGGCGGAGG+TGG + tig0040705:12208-12227 Msa1460170:intergenic 70.0%
TGGTGGCAGCCGCGTCTGAG+AGG - tig0040705:14153-14172 Msa1460170:intron 70.0%
!! GCGGAGGTGCTCGAAGTCCC+TGG - tig0040705:16560-16579 Msa1460170:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0040705 gene 11191 17129 11191 ID=Msa1460170;Name=Msa1460170
tig0040705 mRNA 11191 17129 11191 ID=Msa1460170-mRNA-1;Parent=Msa1460170;Name=Msa1460170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=749|1|1|1|0.6|0.66|6|266|637
tig0040705 exon 11191 11870 11191 ID=Msa1460170-mRNA-1:exon:22593;Parent=Msa1460170-mRNA-1
tig0040705 exon 12087 12420 12087 ID=Msa1460170-mRNA-1:exon:22592;Parent=Msa1460170-mRNA-1
tig0040705 exon 12544 12767 12544 ID=Msa1460170-mRNA-1:exon:22591;Parent=Msa1460170-mRNA-1
tig0040705 exon 14572 14756 14572 ID=Msa1460170-mRNA-1:exon:22590;Parent=Msa1460170-mRNA-1
tig0040705 exon 15602 16827 15602 ID=Msa1460170-mRNA-1:exon:22589;Parent=Msa1460170-mRNA-1
tig0040705 exon 16850 17129 16850 ID=Msa1460170-mRNA-1:exon:22588;Parent=Msa1460170-mRNA-1
tig0040705 five_prime_UTR 16850 17129 16850 ID=Msa1460170-mRNA-1:five_prime_utr;Parent=Msa1460170-mRNA-1
tig0040705 five_prime_UTR 16359 16827 16359 ID=Msa1460170-mRNA-1:five_prime_utr;Parent=Msa1460170-mRNA-1
tig0040705 CDS 15602 16358 15602 ID=Msa1460170-mRNA-1:cds;Parent=Msa1460170-mRNA-1
tig0040705 CDS 14572 14756 14572 ID=Msa1460170-mRNA-1:cds;Parent=Msa1460170-mRNA-1
tig0040705 CDS 12544 12767 12544 ID=Msa1460170-mRNA-1:cds;Parent=Msa1460170-mRNA-1
tig0040705 CDS 12087 12420 12087 ID=Msa1460170-mRNA-1:cds;Parent=Msa1460170-mRNA-1
tig0040705 CDS 11457 11870 11457 ID=Msa1460170-mRNA-1:cds;Parent=Msa1460170-mRNA-1
tig0040705 three_prime_UTR 11191 11456 11191 ID=Msa1460170-mRNA-1:three_prime_utr;Parent=Msa1460170-mRNA-1
Gene Sequence

>Msa1460170

ATGGGCTGTGTGTTATCAAGTATTGATGAGGATGGAAGGGTTGGCATATGCAAGGAAAGGAAGAAGGTAATCAAACAGTTAGTTTGTAATAGAGAGGAGTTTTCTGATGCCTTATTAGCTTATTTGAAAGCGTTGAGGAACACCGGTGCCACACTTAGGCAGTTCACCGAGTCCGATACATTAGAATTAGACTTTGCCTCTACTGGCCTGCCTGAAGCCCCACCTTCCCCACCGCCTGATTTACCACCTCCGCCGCTGCCTCCTTTTCTTGCTGAAAAGAGTTTTGTTCACGTTGGCGAAAATGAAATACTAGAGAATGATGGCACTGATAACTTTGTTCATCTGCTGCAAATTGATCAAGGTTTGAGCTCATCGTTGCTATTTCAACCTGTGGATAAAGTAGAAGTTGTAGAGTCGTTTGAGGAGGAGAATTGGGAAGAAACCAAAACTGAATTTGAGGATGAAGTCCAAGATTCAGAAGCTGATGTAAGTGTGGGAAGATCACGTAGCGGGAAGCAACCGGTCAAAGAACCAGTTGATGATAGTTCCTCTGCTATTACTTTGTTTAGAAAAGAAACTCATGTTACTAAAGCTATTCCCGTGATGATTGGTAGAAGCGGGAGAACATTGGAGGGTATAGTTAAAGAGTTAGACGATCATTTCCTGAAAGCCTCAGCGTGTATAAAGGAAATCGCTGTTCTTATTGATATCAGCAGCGGAGATACTCTTCTGCGGCAGAATTCTGGTCGTCACCCAAGCAAGAGAACCAGTTCTGCAAGGGTATTTAGCGTACTATCATGGAGTAGGCATGCTAAGTCATCCACGTTCACCAAAGATGACGCCGAGTTTTCTAGTCCTAGTGAACCATGCAGGCCGGGAGCTCATTGTGCCACACTCAAAAAATTATATGCGGCAGAGAAGAAACTTTACAAGGCAGTAAAGGAGGAGGGAATTACCAAATTGGAGTTTGAGAGGAAGTCATCGTCATTGAAAAAGCAAGAGGGTGAGGACATTGATTTGGTTAAAATTGACAAAATTCGATCAAATGTTGAGAAATTGGAGTCTGATTTGATAAGCCTGCGGCGGTGCATCAGTGAAACAACTTCATCCATTTTGGAACTTATAGATGAAGAGCTTTTACCCCAGTTGGTTGCATTAACTGCCGGGTTGTCACAAATGTGGAGGATAATGCATGGATGCCATCAGTCACAGGCACTGATCTCCCAGCAGCTGAGTAACCTCAGTGATAACCACAATACAATTCTGAATTCTGAATCTGAATATCATCATCAAGCTACAATTCAGTTTGAGAGTGAGGCTTCTTATTGGTATAATAGCTTCTGTAAACTTGTAAAATCGCAACAAGAGTATGTAAGGACCCTCAGTAAGTGGATTCAGCTTACCAACTGCCTAAGGAATGGCAATGAAAGCGGCAACCACTCTTCTATTCGCACCATTTGTGAACAGTGGGAGCTTGGGCTTGATGGGTTACCAGATAAGGAGGTGGCCAATGCGATAAAAAACCTTCTGTTATCCATACGTTCCATAATTGCTCAACAGGCCGAGGAAGACAACATTCTAAAAAAGTTGGAAAAACTTGAAAGAAAGTTGCGGAGGTGCTCGAAGTCCCTGGACGAGATGCAGAGAAAAATTGAACTAAACTTTGAAGATGAGGGCGATGAAGGTAATATAAGCCCCAGGCATCCGCTATTTCATAAAAAAGCGGAAACAGAAGCCTTAAAGAAGCAAGTGGAAAGTGTGAAAGCAGATTATTTGGATTCTGTTCAGTATAGTAGAACCATGACTCTTGATAACCTCAGAACTAGACTTCCACATCTCTTCGTGACACTGATGGAATTTTCAAGTGCTTCCTCTCAAGCAATTGAGGCTATTCATTCTCAGTCAAGCCAATAG
Protein sequence

>Msa1460170

MGCVLSSIDEDGRVGICKERKKVIKQLVCNREEFSDALLAYLKALRNTGATLRQFTESDTLELDFASTGLPEAPPSPPPDLPPPPLPPFLAEKSFVHVGENEILENDGTDNFVHLLQIDQGLSSSLLFQPVDKVEVVESFEEENWEETKTEFEDEVQDSEADVSVGRSRSGKQPVKEPVDDSSSAITLFRKETHVTKAIPVMIGRSGRTLEGIVKELDDHFLKASACIKEIAVLIDISSGDTLLRQNSGRHPSKRTSSARVFSVLSWSRHAKSSTFTKDDAEFSSPSEPCRPGAHCATLKKLYAAEKKLYKAVKEEGITKLEFERKSSSLKKQEGEDIDLVKIDKIRSNVEKLESDLISLRRCISETTSSILELIDEELLPQLVALTAGLSQMWRIMHGCHQSQALISQQLSNLSDNHNTILNSESEYHHQATIQFESEASYWYNSFCKLVKSQQEYVRTLSKWIQLTNCLRNGNESGNHSSIRTICEQWELGLDGLPDKEVANAIKNLLLSIRSIIAQQAEEDNILKKLEKLERKLRRCSKSLDEMQRKIELNFEDEGDEGNISPRHPLFHKKAETEALKKQVESVKADYLDSVQYSRTMTLDNLRTRLPHLFVTLMEFSSASSQAIEAIHSQSSQ*