AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568290 MtrunA17_Chr8g0382991 91.457 199 11 2 39 236 1 194 2.27e-129 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568290 AT2G21970.1 55.385 195 81 3 39 230 1 192 1.17e-61 192

Find 85 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAAATTGATTCTTTAA+TGG 0.145151 4_1:+69911764 Msa0568290:CDS
ATGTTTGTGTTCGCGCCTTC+TGG 0.200953 4_1:-69911906 None:intergenic
TTCTTTACGGGTCTTGATTA+TGG 0.222006 4_1:-69911985 None:intergenic
CTTGCATGTCTTCTTCTTTA+CGG 0.282945 4_1:-69911998 None:intergenic
TTGCATGTCTTCTTCTTTAC+GGG 0.300636 4_1:-69911997 None:intergenic
CTTAGAACTCTCGATATATT+CGG 0.302152 4_1:-69912057 None:intergenic
GAATTCGGTGTTCAGGAAAA+TGG 0.321728 4_1:+69912306 Msa0568290:CDS
CCTTCTGGTTCAGTCGGTTT+GGG 0.324652 4_1:-69911891 None:intergenic
GCCTTCTGGTTCAGTCGGTT+TGG 0.330559 4_1:-69911892 None:intergenic
AGCAGTTGCGGAGAAGAAAT+TGG 0.350239 4_1:-69911620 None:intergenic
GAGGCGGGTGGGATTTGTTT+GGG 0.354432 4_1:+69912346 Msa0568290:CDS
ACTTGAGAAGAGGTAGTTGT+AGG 0.360345 4_1:-69911725 None:intergenic
GGAGGCGGGTGGGATTTGTT+TGG 0.366265 4_1:+69912345 Msa0568290:CDS
ATGTAACTGATTTCATTTAG+TGG 0.375551 4_1:+69912789 Msa0568290:three_prime_UTR
CTTGAGAAGAGGTAGTTGTA+GGG 0.398686 4_1:-69911724 None:intergenic
TGGTTCAGTCGGTTTGGGTT+TGG 0.403211 4_1:-69911886 None:intergenic
GAACGAGACGATGATACTTT+TGG 0.405757 4_1:-69911825 None:intergenic
GGAGTTGGTGACGGGGAATT+CGG 0.411121 4_1:+69912291 Msa0568290:CDS
TTCAGGAAAATGGATATTGC+AGG 0.423134 4_1:+69912316 Msa0568290:CDS
CTTTGGCGGCAATGTTTGCT+TGG 0.423682 4_1:+69912377 Msa0568290:CDS
CGCGAATTTAGTATTGAACT+TGG 0.427182 4_1:+69912645 Msa0568290:three_prime_UTR
TGACGGGGAATTCGGTGTTC+AGG 0.428337 4_1:+69912299 Msa0568290:CDS
AATGAACGAACGAACGTTGA+AGG 0.431669 4_1:-69911693 None:intergenic
ATCAATTAGCGAATCAATGA+AGG 0.432023 4_1:-69912452 None:intergenic
CGGAGATGATTTCGAAATCC+TGG 0.437279 4_1:-69912085 None:intergenic
TTTGGGTGCGGTTACTTTGG+CGG 0.447382 4_1:+69912363 Msa0568290:CDS
TTCATTATTCAAATTTAAAG+TGG 0.447869 4_1:+69912753 Msa0568290:three_prime_UTR
GTGACGGTGGAGTTGGTGAC+GGG 0.448839 4_1:+69912283 Msa0568290:CDS
CTAATTGATCAAATCGTTGA+CGG 0.458559 4_1:+69912466 Msa0568290:CDS
TTGTTTGGGTGCGGTTACTT+TGG 0.468382 4_1:+69912360 Msa0568290:CDS
AAGAATCAATTTGTTTGTGA+GGG 0.475368 4_1:-69911758 None:intergenic
GTCTTGATTATGGCGCCGAC+TGG 0.478139 4_1:-69911975 None:intergenic
TGTTACCATGGCGAGGCGGC+CGG 0.483455 4_1:-69912105 None:intergenic
TTGGTGACGGAAAATTGAAC+CGG 0.499068 4_1:-69911867 None:intergenic
AGTCGGTTTGGGTTTGGTGA+CGG 0.503663 4_1:-69911880 None:intergenic
GATTATGGCGCCGACTGGAT+CGG 0.505400 4_1:-69911970 None:intergenic
GACGGAAAATTGAACCGGAC+CGG 0.507686 4_1:-69911862 None:intergenic
AAAGTTTGAGACTTGAGAAG+AGG 0.508182 4_1:-69911735 None:intergenic
AATGGATATTGCAGGGATAA+CGG 0.508574 4_1:+69912324 Msa0568290:CDS
AAAGAATCAATTTGTTTGTG+AGG 0.514531 4_1:-69911759 None:intergenic
TTCGGAAAGAGTGGCGAAGA+AGG 0.517357 4_1:-69912039 None:intergenic
ACGGAAAATTGAACCGGACC+GGG 0.517787 4_1:-69911861 None:intergenic
TTCGCGCCTTCTGGTTCAGT+CGG 0.523523 4_1:-69911897 None:intergenic
TATTGCAGGGATAACGGAGG+CGG 0.525078 4_1:+69912330 Msa0568290:CDS
GCAGATGGTGTTTGCAGCGA+CGG 0.525390 4_1:+69912261 Msa0568290:intron
ATGTTCATAGATTGTAAGAT+GGG 0.530332 4_1:+69912690 Msa0568290:three_prime_UTR
CCGCCCCAGAAAACCCGGTC+CGG 0.543265 4_1:+69911848 Msa0568290:CDS
CGTTCCCGCCCCAGAAAACC+CGG 0.547665 4_1:+69911843 Msa0568290:CDS
CTATGCACTCTCAGATCATA+CGG 0.549836 4_1:+69911945 Msa0568290:CDS
GGGTGGGATTTGTTTGGGTG+CGG 0.551031 4_1:+69912351 Msa0568290:CDS
CAGGGATAACGGAGGCGGGT+GGG 0.551178 4_1:+69912335 Msa0568290:CDS
GGGTGAACTCTGATTCATCA+TGG 0.556267 4_1:+69912510 Msa0568290:exon
GCAGGGATAACGGAGGCGGG+TGG 0.556957 4_1:+69912334 Msa0568290:CDS
CGAGAGTTCTAAGAAAAGCC+AGG 0.559263 4_1:+69912067 Msa0568290:CDS
GGTGACGGTGGAGTTGGTGA+CGG 0.559321 4_1:+69912282 Msa0568290:CDS
ACAATCTATGAACATGCTCA+AGG 0.561369 4_1:-69912682 None:intergenic
GTGTGACTAACTGCGAGCTC+CGG 0.567817 4_1:+69911799 Msa0568290:CDS
ATTGCAGGGATAACGGAGGC+GGG 0.570947 4_1:+69912331 Msa0568290:CDS
CATCTCCGGCCGCCTCGCCA+TGG 0.570988 4_1:+69912100 Msa0568290:CDS
CATGTTCATAGATTGTAAGA+TGG 0.573227 4_1:+69912689 Msa0568290:three_prime_UTR
TGACGGTGGAGTTGGTGACG+GGG 0.573283 4_1:+69912284 Msa0568290:CDS
CAGGATTTCGAAATCATCTC+CGG 0.574628 4_1:+69912086 Msa0568290:CDS
TAATAACGAGTAAGCAGTTG+CGG 0.582455 4_1:-69911632 None:intergenic
ATTGTAAGATGGGTGGTTAG+CGG 0.585816 4_1:+69912700 Msa0568290:three_prime_UTR
AGCGACGGTGACGGTGGAGT+TGG 0.587633 4_1:+69912276 Msa0568290:CDS
TGATTCATCATGGTTTGATG+AGG 0.593825 4_1:+69912520 Msa0568290:exon
CTCGATATATTCGGAAAGAG+TGG 0.596447 4_1:-69912048 None:intergenic
TGTGAAGATTCGATCCACTC+TGG 0.602920 4_1:-69912416 None:intergenic
TTCATAGATTGTAAGATGGG+TGG 0.607672 4_1:+69912693 Msa0568290:three_prime_UTR
CAATCTATGAACATGCTCAA+GGG 0.610585 4_1:-69912681 None:intergenic
GAAGAAGGAGGACACGTCAT+CGG 0.616933 4_1:-69912024 None:intergenic
GGAAAGAGTGGCGAAGAAGG+AGG 0.623174 4_1:-69912036 None:intergenic
GGTGTTTGCAGCGACGGTGA+CGG 0.625726 4_1:+69912267 Msa0568290:CDS
CTCAAGTGCTCGTACCAGAG+TGG 0.631041 4_1:+69912402 Msa0568290:CDS
TTGTTCTATGATGATAGCGA+GGG 0.632266 4_1:+69912490 Msa0568290:CDS
TTTGTTCTATGATGATAGCG+AGG 0.632796 4_1:+69912489 Msa0568290:CDS
TCAGGAAAATGGATATTGCA+GGG 0.643208 4_1:+69912317 Msa0568290:CDS
CAAACATCGTTCTACAACCG+CGG 0.645183 4_1:+69911922 Msa0568290:CDS
CCCAAACCGACTGAACCAGA+AGG 0.654325 4_1:+69911891 Msa0568290:CDS
GTTTGCAGCGACGGTGACGG+TGG 0.675734 4_1:+69912270 Msa0568290:CDS
ATTGGATACGTAGCACACAC+AGG 0.687544 4_1:-69911602 None:intergenic
AGGTATCAGACAAAACTATG+TGG 0.693305 4_1:-69911582 None:intergenic
GGATATTGCAGGGATAACGG+AGG 0.721943 4_1:+69912327 Msa0568290:CDS
GATCTGAGAGTGCATAGCCG+CGG 0.723172 4_1:-69911939 None:intergenic
TCATACGGTTCCGATCCAGT+CGG 0.759723 4_1:+69911960 Msa0568290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATACTATGACTTTTTT+TGG + chr4_1:69911660-69911679 Msa0568290:exon 15.0%
!! TTCATTATTCAAATTTAAAG+TGG + chr4_1:69912753-69912772 Msa0568290:three_prime_UTR 15.0%
!!! ATTAATACTATGACTTTTTT+TGG + chr4_1:69911660-69911679 Msa0568290:exon 15.0%
!! TTCATTATTCAAATTTAAAG+TGG + chr4_1:69912753-69912772 Msa0568290:three_prime_UTR 15.0%
!!! CAAACAAATTGATTCTTTAA+TGG + chr4_1:69911764-69911783 Msa0568290:CDS 20.0%
!! CATTATTCTCAGTTTATTAT+TGG + chr4_1:69912168-69912187 Msa0568290:intron 20.0%
!! TTCCTCTAATATAGTATATA+TGG - chr4_1:69912211-69912230 None:intergenic 20.0%
!!! CAAACAAATTGATTCTTTAA+TGG + chr4_1:69911764-69911783 Msa0568290:CDS 20.0%
!! CATTATTCTCAGTTTATTAT+TGG + chr4_1:69912168-69912187 Msa0568290:intron 20.0%
!! TTCCTCTAATATAGTATATA+TGG - chr4_1:69912211-69912230 None:intergenic 20.0%
!! AAGAATCAATTTGTTTGTGA+GGG - chr4_1:69911761-69911780 None:intergenic 25.0%
!! AAAGAATCAATTTGTTTGTG+AGG - chr4_1:69911762-69911781 None:intergenic 25.0%
! AATATAGTATATATGGACAC+CGG - chr4_1:69912204-69912223 None:intergenic 25.0%
! GTCCATATATACTATATTAG+AGG + chr4_1:69912206-69912225 Msa0568290:intron 25.0%
!!! ATTGTTGCTTTTTATTGATG+TGG + chr4_1:69912234-69912253 Msa0568290:intron 25.0%
! ATGTTCATAGATTGTAAGAT+GGG + chr4_1:69912690-69912709 Msa0568290:three_prime_UTR 25.0%
!! ATGTAACTGATTTCATTTAG+TGG + chr4_1:69912789-69912808 Msa0568290:three_prime_UTR 25.0%
!! AAGAATCAATTTGTTTGTGA+GGG - chr4_1:69911761-69911780 None:intergenic 25.0%
!! AAAGAATCAATTTGTTTGTG+AGG - chr4_1:69911762-69911781 None:intergenic 25.0%
! AATATAGTATATATGGACAC+CGG - chr4_1:69912204-69912223 None:intergenic 25.0%
! GTCCATATATACTATATTAG+AGG + chr4_1:69912206-69912225 Msa0568290:intron 25.0%
!!! ATTGTTGCTTTTTATTGATG+TGG + chr4_1:69912234-69912253 Msa0568290:intron 25.0%
! ATGTTCATAGATTGTAAGAT+GGG + chr4_1:69912690-69912709 Msa0568290:three_prime_UTR 25.0%
!! ATGTAACTGATTTCATTTAG+TGG + chr4_1:69912789-69912808 Msa0568290:three_prime_UTR 25.0%
CTTAGAACTCTCGATATATT+CGG - chr4_1:69912060-69912079 None:intergenic 30.0%
ATCAATTAGCGAATCAATGA+AGG - chr4_1:69912455-69912474 None:intergenic 30.0%
CTAATTGATCAAATCGTTGA+CGG + chr4_1:69912466-69912485 Msa0568290:CDS 30.0%
CATGTTCATAGATTGTAAGA+TGG + chr4_1:69912689-69912708 Msa0568290:three_prime_UTR 30.0%
CTTAGAACTCTCGATATATT+CGG - chr4_1:69912060-69912079 None:intergenic 30.0%
ATCAATTAGCGAATCAATGA+AGG - chr4_1:69912455-69912474 None:intergenic 30.0%
CTAATTGATCAAATCGTTGA+CGG + chr4_1:69912466-69912485 Msa0568290:CDS 30.0%
CATGTTCATAGATTGTAAGA+TGG + chr4_1:69912689-69912708 Msa0568290:three_prime_UTR 30.0%
AGGTATCAGACAAAACTATG+TGG - chr4_1:69911585-69911604 None:intergenic 35.0%
TAATAACGAGTAAGCAGTTG+CGG - chr4_1:69911635-69911654 None:intergenic 35.0%
! AAAGTTTGAGACTTGAGAAG+AGG - chr4_1:69911738-69911757 None:intergenic 35.0%
TTCTTTACGGGTCTTGATTA+TGG - chr4_1:69911988-69912007 None:intergenic 35.0%
TTGCATGTCTTCTTCTTTAC+GGG - chr4_1:69912000-69912019 None:intergenic 35.0%
CTTGCATGTCTTCTTCTTTA+CGG - chr4_1:69912001-69912020 None:intergenic 35.0%
!!! GTTGCTTTTTATTGATGTGG+TGG + chr4_1:69912237-69912256 Msa0568290:intron 35.0%
TTCAGGAAAATGGATATTGC+AGG + chr4_1:69912316-69912335 Msa0568290:CDS 35.0%
TCAGGAAAATGGATATTGCA+GGG + chr4_1:69912317-69912336 Msa0568290:CDS 35.0%
AATGGATATTGCAGGGATAA+CGG + chr4_1:69912324-69912343 Msa0568290:CDS 35.0%
! TTTGTTCTATGATGATAGCG+AGG + chr4_1:69912489-69912508 Msa0568290:CDS 35.0%
! TTGTTCTATGATGATAGCGA+GGG + chr4_1:69912490-69912509 Msa0568290:CDS 35.0%
TGATTCATCATGGTTTGATG+AGG + chr4_1:69912520-69912539 Msa0568290:exon 35.0%
! CGCGAATTTAGTATTGAACT+TGG + chr4_1:69912645-69912664 Msa0568290:three_prime_UTR 35.0%
CAATCTATGAACATGCTCAA+GGG - chr4_1:69912684-69912703 None:intergenic 35.0%
ACAATCTATGAACATGCTCA+AGG - chr4_1:69912685-69912704 None:intergenic 35.0%
TTCATAGATTGTAAGATGGG+TGG + chr4_1:69912693-69912712 Msa0568290:three_prime_UTR 35.0%
AGGTATCAGACAAAACTATG+TGG - chr4_1:69911585-69911604 None:intergenic 35.0%
TAATAACGAGTAAGCAGTTG+CGG - chr4_1:69911635-69911654 None:intergenic 35.0%
! AAAGTTTGAGACTTGAGAAG+AGG - chr4_1:69911738-69911757 None:intergenic 35.0%
TTCTTTACGGGTCTTGATTA+TGG - chr4_1:69911988-69912007 None:intergenic 35.0%
TTGCATGTCTTCTTCTTTAC+GGG - chr4_1:69912000-69912019 None:intergenic 35.0%
CTTGCATGTCTTCTTCTTTA+CGG - chr4_1:69912001-69912020 None:intergenic 35.0%
!!! GTTGCTTTTTATTGATGTGG+TGG + chr4_1:69912237-69912256 Msa0568290:intron 35.0%
TTCAGGAAAATGGATATTGC+AGG + chr4_1:69912316-69912335 Msa0568290:CDS 35.0%
TCAGGAAAATGGATATTGCA+GGG + chr4_1:69912317-69912336 Msa0568290:CDS 35.0%
AATGGATATTGCAGGGATAA+CGG + chr4_1:69912324-69912343 Msa0568290:CDS 35.0%
! TTTGTTCTATGATGATAGCG+AGG + chr4_1:69912489-69912508 Msa0568290:CDS 35.0%
! TTGTTCTATGATGATAGCGA+GGG + chr4_1:69912490-69912509 Msa0568290:CDS 35.0%
TGATTCATCATGGTTTGATG+AGG + chr4_1:69912520-69912539 Msa0568290:exon 35.0%
! CGCGAATTTAGTATTGAACT+TGG + chr4_1:69912645-69912664 Msa0568290:three_prime_UTR 35.0%
CAATCTATGAACATGCTCAA+GGG - chr4_1:69912684-69912703 None:intergenic 35.0%
ACAATCTATGAACATGCTCA+AGG - chr4_1:69912685-69912704 None:intergenic 35.0%
TTCATAGATTGTAAGATGGG+TGG + chr4_1:69912693-69912712 Msa0568290:three_prime_UTR 35.0%
AATGAACGAACGAACGTTGA+AGG - chr4_1:69911696-69911715 None:intergenic 40.0%
CTTGAGAAGAGGTAGTTGTA+GGG - chr4_1:69911727-69911746 None:intergenic 40.0%
ACTTGAGAAGAGGTAGTTGT+AGG - chr4_1:69911728-69911747 None:intergenic 40.0%
! GAACGAGACGATGATACTTT+TGG - chr4_1:69911828-69911847 None:intergenic 40.0%
!! TTGGTGACGGAAAATTGAAC+CGG - chr4_1:69911870-69911889 None:intergenic 40.0%
CTATGCACTCTCAGATCATA+CGG + chr4_1:69911945-69911964 Msa0568290:CDS 40.0%
CTCGATATATTCGGAAAGAG+TGG - chr4_1:69912051-69912070 None:intergenic 40.0%
CAGGATTTCGAAATCATCTC+CGG + chr4_1:69912086-69912105 Msa0568290:CDS 40.0%
!!! GTGTTAGGGTTTTGTTACCA+TGG - chr4_1:69912120-69912139 None:intergenic 40.0%
GATCACATGCGTTAGTGTTA+GGG - chr4_1:69912134-69912153 None:intergenic 40.0%
TGATCACATGCGTTAGTGTT+AGG - chr4_1:69912135-69912154 None:intergenic 40.0%
!! TATTATTGGTGTCAACGTGC+CGG + chr4_1:69912182-69912201 Msa0568290:intron 40.0%
!! GAATTCGGTGTTCAGGAAAA+TGG + chr4_1:69912306-69912325 Msa0568290:CDS 40.0%
ATTGTAAGATGGGTGGTTAG+CGG + chr4_1:69912700-69912719 Msa0568290:three_prime_UTR 40.0%
AATGAACGAACGAACGTTGA+AGG - chr4_1:69911696-69911715 None:intergenic 40.0%
CTTGAGAAGAGGTAGTTGTA+GGG - chr4_1:69911727-69911746 None:intergenic 40.0%
ACTTGAGAAGAGGTAGTTGT+AGG - chr4_1:69911728-69911747 None:intergenic 40.0%
! GAACGAGACGATGATACTTT+TGG - chr4_1:69911828-69911847 None:intergenic 40.0%
!! TTGGTGACGGAAAATTGAAC+CGG - chr4_1:69911870-69911889 None:intergenic 40.0%
CTATGCACTCTCAGATCATA+CGG + chr4_1:69911945-69911964 Msa0568290:CDS 40.0%
CTCGATATATTCGGAAAGAG+TGG - chr4_1:69912051-69912070 None:intergenic 40.0%
CAGGATTTCGAAATCATCTC+CGG + chr4_1:69912086-69912105 Msa0568290:CDS 40.0%
!!! GTGTTAGGGTTTTGTTACCA+TGG - chr4_1:69912120-69912139 None:intergenic 40.0%
GATCACATGCGTTAGTGTTA+GGG - chr4_1:69912134-69912153 None:intergenic 40.0%
TGATCACATGCGTTAGTGTT+AGG - chr4_1:69912135-69912154 None:intergenic 40.0%
!! TATTATTGGTGTCAACGTGC+CGG + chr4_1:69912182-69912201 Msa0568290:intron 40.0%
!! GAATTCGGTGTTCAGGAAAA+TGG + chr4_1:69912306-69912325 Msa0568290:CDS 40.0%
ATTGTAAGATGGGTGGTTAG+CGG + chr4_1:69912700-69912719 Msa0568290:three_prime_UTR 40.0%
ATTGGATACGTAGCACACAC+AGG - chr4_1:69911605-69911624 None:intergenic 45.0%
AGCAGTTGCGGAGAAGAAAT+TGG - chr4_1:69911623-69911642 None:intergenic 45.0%
!! ACGATGATACTTTTGGTGGC+CGG - chr4_1:69911821-69911840 None:intergenic 45.0%
! CGAGACGATGATACTTTTGG+TGG - chr4_1:69911825-69911844 None:intergenic 45.0%
CAAACATCGTTCTACAACCG+CGG + chr4_1:69911922-69911941 Msa0568290:CDS 45.0%
!! CGAGAGTTCTAAGAAAAGCC+AGG + chr4_1:69912067-69912086 Msa0568290:CDS 45.0%
CGGAGATGATTTCGAAATCC+TGG - chr4_1:69912088-69912107 None:intergenic 45.0%
! TATTGATGTGGTGGTGCAGA+TGG + chr4_1:69912246-69912265 Msa0568290:intron 45.0%
TTGTTTGGGTGCGGTTACTT+TGG + chr4_1:69912360-69912379 Msa0568290:CDS 45.0%
TGTGAAGATTCGATCCACTC+TGG - chr4_1:69912419-69912438 None:intergenic 45.0%
GGGTGAACTCTGATTCATCA+TGG + chr4_1:69912510-69912529 Msa0568290:exon 45.0%
ATTGGATACGTAGCACACAC+AGG - chr4_1:69911605-69911624 None:intergenic 45.0%
AGCAGTTGCGGAGAAGAAAT+TGG - chr4_1:69911623-69911642 None:intergenic 45.0%
!! ACGATGATACTTTTGGTGGC+CGG - chr4_1:69911821-69911840 None:intergenic 45.0%
! CGAGACGATGATACTTTTGG+TGG - chr4_1:69911825-69911844 None:intergenic 45.0%
CAAACATCGTTCTACAACCG+CGG + chr4_1:69911922-69911941 Msa0568290:CDS 45.0%
!! CGAGAGTTCTAAGAAAAGCC+AGG + chr4_1:69912067-69912086 Msa0568290:CDS 45.0%
CGGAGATGATTTCGAAATCC+TGG - chr4_1:69912088-69912107 None:intergenic 45.0%
! TATTGATGTGGTGGTGCAGA+TGG + chr4_1:69912246-69912265 Msa0568290:intron 45.0%
TTGTTTGGGTGCGGTTACTT+TGG + chr4_1:69912360-69912379 Msa0568290:CDS 45.0%
TGTGAAGATTCGATCCACTC+TGG - chr4_1:69912419-69912438 None:intergenic 45.0%
GGGTGAACTCTGATTCATCA+TGG + chr4_1:69912510-69912529 Msa0568290:exon 45.0%
ACGGAAAATTGAACCGGACC+GGG - chr4_1:69911864-69911883 None:intergenic 50.0%
GACGGAAAATTGAACCGGAC+CGG - chr4_1:69911865-69911884 None:intergenic 50.0%
!! AGTCGGTTTGGGTTTGGTGA+CGG - chr4_1:69911883-69911902 None:intergenic 50.0%
!! TGGTTCAGTCGGTTTGGGTT+TGG - chr4_1:69911889-69911908 None:intergenic 50.0%
!! CCTTCTGGTTCAGTCGGTTT+GGG - chr4_1:69911894-69911913 None:intergenic 50.0%
ATGTTTGTGTTCGCGCCTTC+TGG - chr4_1:69911909-69911928 None:intergenic 50.0%
TCATACGGTTCCGATCCAGT+CGG + chr4_1:69911960-69911979 Msa0568290:CDS 50.0%
GAAGAAGGAGGACACGTCAT+CGG - chr4_1:69912027-69912046 None:intergenic 50.0%
TTCGGAAAGAGTGGCGAAGA+AGG - chr4_1:69912042-69912061 None:intergenic 50.0%
!! GTTTTGTTACCATGGCGAGG+CGG - chr4_1:69912112-69912131 None:intergenic 50.0%
!!! AGGGTTTTGTTACCATGGCG+AGG - chr4_1:69912115-69912134 None:intergenic 50.0%
! GGATATTGCAGGGATAACGG+AGG + chr4_1:69912327-69912346 Msa0568290:CDS 50.0%
!! TATTGCAGGGATAACGGAGG+CGG + chr4_1:69912330-69912349 Msa0568290:CDS 50.0%
! TTTGGGTGCGGTTACTTTGG+CGG + chr4_1:69912363-69912382 Msa0568290:CDS 50.0%
CTTTGGCGGCAATGTTTGCT+TGG + chr4_1:69912377-69912396 Msa0568290:CDS 50.0%
ACGGAAAATTGAACCGGACC+GGG - chr4_1:69911864-69911883 None:intergenic 50.0%
GACGGAAAATTGAACCGGAC+CGG - chr4_1:69911865-69911884 None:intergenic 50.0%
!! AGTCGGTTTGGGTTTGGTGA+CGG - chr4_1:69911883-69911902 None:intergenic 50.0%
!! TGGTTCAGTCGGTTTGGGTT+TGG - chr4_1:69911889-69911908 None:intergenic 50.0%
!! CCTTCTGGTTCAGTCGGTTT+GGG - chr4_1:69911894-69911913 None:intergenic 50.0%
ATGTTTGTGTTCGCGCCTTC+TGG - chr4_1:69911909-69911928 None:intergenic 50.0%
TCATACGGTTCCGATCCAGT+CGG + chr4_1:69911960-69911979 Msa0568290:CDS 50.0%
GAAGAAGGAGGACACGTCAT+CGG - chr4_1:69912027-69912046 None:intergenic 50.0%
TTCGGAAAGAGTGGCGAAGA+AGG - chr4_1:69912042-69912061 None:intergenic 50.0%
!! GTTTTGTTACCATGGCGAGG+CGG - chr4_1:69912112-69912131 None:intergenic 50.0%
!!! AGGGTTTTGTTACCATGGCG+AGG - chr4_1:69912115-69912134 None:intergenic 50.0%
! GGATATTGCAGGGATAACGG+AGG + chr4_1:69912327-69912346 Msa0568290:CDS 50.0%
!! TATTGCAGGGATAACGGAGG+CGG + chr4_1:69912330-69912349 Msa0568290:CDS 50.0%
! TTTGGGTGCGGTTACTTTGG+CGG + chr4_1:69912363-69912382 Msa0568290:CDS 50.0%
CTTTGGCGGCAATGTTTGCT+TGG + chr4_1:69912377-69912396 Msa0568290:CDS 50.0%
GTGTGACTAACTGCGAGCTC+CGG + chr4_1:69911799-69911818 Msa0568290:CDS 55.0%
! TGAACCGGACCGGGTTTTCT+GGG - chr4_1:69911855-69911874 None:intergenic 55.0%
! TTGAACCGGACCGGGTTTTC+TGG - chr4_1:69911856-69911875 None:intergenic 55.0%
CCCAAACCGACTGAACCAGA+AGG + chr4_1:69911891-69911910 Msa0568290:CDS 55.0%
!! GCCTTCTGGTTCAGTCGGTT+TGG - chr4_1:69911895-69911914 None:intergenic 55.0%
!! TTCGCGCCTTCTGGTTCAGT+CGG - chr4_1:69911900-69911919 None:intergenic 55.0%
! GATCTGAGAGTGCATAGCCG+CGG - chr4_1:69911942-69911961 None:intergenic 55.0%
!! GATTATGGCGCCGACTGGAT+CGG - chr4_1:69911973-69911992 None:intergenic 55.0%
!! GTCTTGATTATGGCGCCGAC+TGG - chr4_1:69911978-69911997 None:intergenic 55.0%
GGAAAGAGTGGCGAAGAAGG+AGG - chr4_1:69912039-69912058 None:intergenic 55.0%
GCAGATGGTGTTTGCAGCGA+CGG + chr4_1:69912261-69912280 Msa0568290:intron 55.0%
!! GGAGTTGGTGACGGGGAATT+CGG + chr4_1:69912291-69912310 Msa0568290:CDS 55.0%
!! TGACGGGGAATTCGGTGTTC+AGG + chr4_1:69912299-69912318 Msa0568290:CDS 55.0%
!! ATTGCAGGGATAACGGAGGC+GGG + chr4_1:69912331-69912350 Msa0568290:CDS 55.0%
! GAGGCGGGTGGGATTTGTTT+GGG + chr4_1:69912346-69912365 Msa0568290:CDS 55.0%
! GGGTGGGATTTGTTTGGGTG+CGG + chr4_1:69912351-69912370 Msa0568290:CDS 55.0%
CTCAAGTGCTCGTACCAGAG+TGG + chr4_1:69912402-69912421 Msa0568290:CDS 55.0%
GTGTGACTAACTGCGAGCTC+CGG + chr4_1:69911799-69911818 Msa0568290:CDS 55.0%
! TGAACCGGACCGGGTTTTCT+GGG - chr4_1:69911855-69911874 None:intergenic 55.0%
! TTGAACCGGACCGGGTTTTC+TGG - chr4_1:69911856-69911875 None:intergenic 55.0%
CCCAAACCGACTGAACCAGA+AGG + chr4_1:69911891-69911910 Msa0568290:CDS 55.0%
!! GCCTTCTGGTTCAGTCGGTT+TGG - chr4_1:69911895-69911914 None:intergenic 55.0%
!! TTCGCGCCTTCTGGTTCAGT+CGG - chr4_1:69911900-69911919 None:intergenic 55.0%
! GATCTGAGAGTGCATAGCCG+CGG - chr4_1:69911942-69911961 None:intergenic 55.0%
!! GATTATGGCGCCGACTGGAT+CGG - chr4_1:69911973-69911992 None:intergenic 55.0%
!! GTCTTGATTATGGCGCCGAC+TGG - chr4_1:69911978-69911997 None:intergenic 55.0%
GGAAAGAGTGGCGAAGAAGG+AGG - chr4_1:69912039-69912058 None:intergenic 55.0%
GCAGATGGTGTTTGCAGCGA+CGG + chr4_1:69912261-69912280 Msa0568290:intron 55.0%
!! GGAGTTGGTGACGGGGAATT+CGG + chr4_1:69912291-69912310 Msa0568290:CDS 55.0%
!! TGACGGGGAATTCGGTGTTC+AGG + chr4_1:69912299-69912318 Msa0568290:CDS 55.0%
!! ATTGCAGGGATAACGGAGGC+GGG + chr4_1:69912331-69912350 Msa0568290:CDS 55.0%
! GAGGCGGGTGGGATTTGTTT+GGG + chr4_1:69912346-69912365 Msa0568290:CDS 55.0%
! GGGTGGGATTTGTTTGGGTG+CGG + chr4_1:69912351-69912370 Msa0568290:CDS 55.0%
CTCAAGTGCTCGTACCAGAG+TGG + chr4_1:69912402-69912421 Msa0568290:CDS 55.0%
! GAACCGGACCGGGTTTTCTG+GGG - chr4_1:69911854-69911873 None:intergenic 60.0%
GGTGTTTGCAGCGACGGTGA+CGG + chr4_1:69912267-69912286 Msa0568290:CDS 60.0%
!! GGTGACGGTGGAGTTGGTGA+CGG + chr4_1:69912282-69912301 Msa0568290:CDS 60.0%
!! GTGACGGTGGAGTTGGTGAC+GGG + chr4_1:69912283-69912302 Msa0568290:CDS 60.0%
!! TGACGGTGGAGTTGGTGACG+GGG + chr4_1:69912284-69912303 Msa0568290:CDS 60.0%
! GGAGGCGGGTGGGATTTGTT+TGG + chr4_1:69912345-69912364 Msa0568290:CDS 60.0%
! GAACCGGACCGGGTTTTCTG+GGG - chr4_1:69911854-69911873 None:intergenic 60.0%
GGTGTTTGCAGCGACGGTGA+CGG + chr4_1:69912267-69912286 Msa0568290:CDS 60.0%
!! GGTGACGGTGGAGTTGGTGA+CGG + chr4_1:69912282-69912301 Msa0568290:CDS 60.0%
!! GTGACGGTGGAGTTGGTGAC+GGG + chr4_1:69912283-69912302 Msa0568290:CDS 60.0%
!! TGACGGTGGAGTTGGTGACG+GGG + chr4_1:69912284-69912303 Msa0568290:CDS 60.0%
! GGAGGCGGGTGGGATTTGTT+TGG + chr4_1:69912345-69912364 Msa0568290:CDS 60.0%
CGTTCCCGCCCCAGAAAACC+CGG + chr4_1:69911843-69911862 Msa0568290:CDS 65.0%
TGTTACCATGGCGAGGCGGC+CGG - chr4_1:69912108-69912127 None:intergenic 65.0%
! GTTTGCAGCGACGGTGACGG+TGG + chr4_1:69912270-69912289 Msa0568290:CDS 65.0%
! AGCGACGGTGACGGTGGAGT+TGG + chr4_1:69912276-69912295 Msa0568290:CDS 65.0%
!! CAGGGATAACGGAGGCGGGT+GGG + chr4_1:69912335-69912354 Msa0568290:CDS 65.0%
CGTTCCCGCCCCAGAAAACC+CGG + chr4_1:69911843-69911862 Msa0568290:CDS 65.0%
TGTTACCATGGCGAGGCGGC+CGG - chr4_1:69912108-69912127 None:intergenic 65.0%
! GTTTGCAGCGACGGTGACGG+TGG + chr4_1:69912270-69912289 Msa0568290:CDS 65.0%
! AGCGACGGTGACGGTGGAGT+TGG + chr4_1:69912276-69912295 Msa0568290:CDS 65.0%
!! CAGGGATAACGGAGGCGGGT+GGG + chr4_1:69912335-69912354 Msa0568290:CDS 65.0%
!!! CGGACCGGGTTTTCTGGGGC+GGG - chr4_1:69911850-69911869 None:intergenic 70.0%
!! CCGGACCGGGTTTTCTGGGG+CGG - chr4_1:69911851-69911870 None:intergenic 70.0%
CCGCCCCAGAAAACCCGGTC+CGG + chr4_1:69911848-69911867 Msa0568290:CDS 70.0%
!! GCAGGGATAACGGAGGCGGG+TGG + chr4_1:69912334-69912353 Msa0568290:CDS 70.0%
!!! CGGACCGGGTTTTCTGGGGC+GGG - chr4_1:69911850-69911869 None:intergenic 70.0%
!! CCGGACCGGGTTTTCTGGGG+CGG - chr4_1:69911851-69911870 None:intergenic 70.0%
CCGCCCCAGAAAACCCGGTC+CGG + chr4_1:69911848-69911867 Msa0568290:CDS 70.0%
!! GCAGGGATAACGGAGGCGGG+TGG + chr4_1:69912334-69912353 Msa0568290:CDS 70.0%
CATCTCCGGCCGCCTCGCCA+TGG + chr4_1:69912100-69912119 Msa0568290:CDS 75.0%
CATCTCCGGCCGCCTCGCCA+TGG + chr4_1:69912100-69912119 Msa0568290:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69911576 69912838 69911576 ID=Msa0568290;Name=Msa0568290
chr4_1 mRNA 69911576 69912838 69911576 ID=Msa0568290-mRNA-1;Parent=Msa0568290;Name=Msa0568290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93|1|1|1|1|1|2|316|236
chr4_1 exon 69911576 69912121 69911576 ID=Msa0568290-mRNA-1:exon:23440;Parent=Msa0568290-mRNA-1
chr4_1 exon 69912265 69912838 69912265 ID=Msa0568290-mRNA-1:exon:23441;Parent=Msa0568290-mRNA-1
chr4_1 five_prime_UTR 69911576 69911668 69911576 ID=Msa0568290-mRNA-1:five_prime_utr;Parent=Msa0568290-mRNA-1
chr4_1 CDS 69911669 69912121 69911669 ID=Msa0568290-mRNA-1:cds;Parent=Msa0568290-mRNA-1
chr4_1 CDS 69912265 69912522 69912265 ID=Msa0568290-mRNA-1:cds;Parent=Msa0568290-mRNA-1
chr4_1 three_prime_UTR 69912523 69912838 69912523 ID=Msa0568290-mRNA-1:three_prime_utr;Parent=Msa0568290-mRNA-1
Gene Sequence

>Msa0568290

ATGACTTTTTTTGGTAATATTCAACCTTCAACGTTCGTTCGTTCATTCATTCATTCCCTACAACTACCTCTTCTCAAGTCTCAAACTTTCCCTCACAAACAAATTGATTCTTTAATGGCATCTGCAGCGCGTGTGACTAACTGCGAGCTCCGGCCACCAAAAGTATCATCGTCTCGTTCCCGCCCCAGAAAACCCGGTCCGGTTCAATTTTCCGTCACCAAACCCAAACCGACTGAACCAGAAGGCGCGAACACAAACATCGTTCTACAACCGCGGCTATGCACTCTCAGATCATACGGTTCCGATCCAGTCGGCGCCATAATCAAGACCCGTAAAGAAGAAGACATGCAAGTTACCGATGACGTGTCCTCCTTCTTCGCCACTCTTTCCGAATATATCGAGAGTTCTAAGAAAAGCCAGGATTTCGAAATCATCTCCGGCCGCCTCGCCATGATGGTGTTTGCAGCGACGGTGACGGTGGAGTTGGTGACGGGGAATTCGGTGTTCAGGAAAATGGATATTGCAGGGATAACGGAGGCGGGTGGGATTTGTTTGGGTGCGGTTACTTTGGCGGCAATGTTTGCTTGGTTCTCAAGTGCTCGTACCAGAGTGGATCGAATCTTCACAGTCAGCTACAACTCCTTCATTGATTCGCTAATTGATCAAATCGTTGACGGTTTGTTCTATGATGATAGCGAGGGTGAACTCTGA

Protein sequence

>Msa0568290

MTFFGNIQPSTFVRSFIHSLQLPLLKSQTFPHKQIDSLMASAARVTNCELRPPKVSSSRSRPRKPGPVQFSVTKPKPTEPEGANTNIVLQPRLCTLRSYGSDPVGAIIKTRKEEDMQVTDDVSSFFATLSEYIESSKKSQDFEIISGRLAMMVFAATVTVELVTGNSVFRKMDIAGITEAGGICLGAVTLAAMFAWFSSARTRVDRIFTVSYNSFIDSLIDQIVDGLFYDDSEGEL*