AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219840 MtrunA17_Chr2g0323081 99.367 158 1 0 1 158 1 158 1.89e-113 318
Msa0219840 MtrunA17_Chr4g0023621 70.886 158 46 0 1 158 1 158 1.58e-80 235
Msa0219840 MtrunA17_Chr4g0049001 60.127 158 63 0 1 158 1 158 3.77e-71 211
Msa0219840 MtrunA17_Chr2g0280491 60.127 158 63 0 1 158 1 158 1.03e-61 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219840 AT4G21310.1 68.354 158 50 0 1 158 1 158 1.71e-78 230
Msa0219840 AT2G32280.1 62.658 158 59 0 1 158 1 158 4.73e-72 214
Msa0219840 AT2G32280.2 62.658 158 59 0 1 158 1 158 4.73e-72 214
Msa0219840 AT4G21310.2 65.000 120 42 0 39 158 1 120 1.53e-54 168
Msa0219840 AT1G11500.1 41.212 165 90 1 1 158 1 165 4.02e-36 123
Msa0219840 AT1G11500.3 41.212 165 90 1 1 158 6 170 5.61e-36 123
Msa0219840 AT1G11500.2 43.860 114 64 0 45 158 24 137 1.82e-27 100
Msa0219840 AT1G05291.1 38.776 147 83 3 12 155 23 165 1.73e-23 91.7

Find 61 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACTCTACTTGTACTA+TGG 0.146899 2_1:-67698550 Msa0219840:three_prime_UTR
ATTTAGTAAAGCAACAAATT+TGG 0.256307 2_1:+67698587 None:intergenic
AGTCATAAGGCCTTCATGTT+TGG 0.331948 2_1:-67699308 Msa0219840:CDS
CTTTCATTGGACAATGACTT+TGG 0.342392 2_1:+67698407 None:intergenic
GATGTCACAGCTGGGATTCT+TGG 0.346927 2_1:-67699684 Msa0219840:CDS
ACCGCAGCCACCTAGCAAAT+TGG 0.354925 2_1:+67699244 None:intergenic
GTAGAAAGATCTATAATCTA+TGG 0.358121 2_1:+67698373 None:intergenic
GCCATTGAGAGTTGCCTATT+GGG 0.372087 2_1:+67699185 None:intergenic
GGCCATTGAGAGTTGCCTAT+TGG 0.393490 2_1:+67699184 None:intergenic
ATGTCTCTTGATTGTTATCA+TGG 0.396765 2_1:-67699706 Msa0219840:CDS
GGTAATCTAAAATCTTTCAT+TGG 0.398016 2_1:+67698394 None:intergenic
GGATTGAGCATGTTGGTGAT+AGG 0.405472 2_1:-67698816 Msa0219840:CDS
GAAATTAATTCTCTCAGAAA+TGG 0.412103 2_1:-67699751 Msa0219840:exon
TTCCTTAGTCACTAATTAAG+AGG 0.431827 2_1:+67698668 None:intergenic
GCTGTTGATCAGGATTGTTT+TGG 0.441728 2_1:-67698844 Msa0219840:intron
ATTTACTCTACTTGTACTAT+GGG 0.442797 2_1:-67698549 Msa0219840:three_prime_UTR
TACACATGTCAGTGGATTAG+TGG 0.447914 2_1:+67698480 None:intergenic
GACCATCACTTTCTATCCAT+TGG 0.452040 2_1:-67698750 Msa0219840:CDS
CACAAAAGCAAGAGCAGAAG+TGG 0.467268 2_1:+67698629 None:intergenic
GCCAATTTGCTAGGTGGCTG+CGG 0.471857 2_1:-67699245 Msa0219840:CDS
ACCCAATAGGCAACTCTCAA+TGG 0.473987 2_1:-67699186 Msa0219840:CDS
TGCCTCTTAATTAGTGACTA+AGG 0.478388 2_1:-67698670 Msa0219840:exon
GACTAAGGAAACACATAGAA+TGG 0.481433 2_1:-67698655 Msa0219840:three_prime_UTR
TTCAAAAGTCTTCACCCAAT+AGG 0.481487 2_1:-67699199 Msa0219840:CDS
GTTATCATGGATGTCACAGC+TGG 0.486047 2_1:-67699693 Msa0219840:CDS
TCAGAAATGGCTAGAGAAGT+TGG 0.488463 2_1:-67699738 Msa0219840:exon
TTGGTAAAGAAAAGCATACT+TGG 0.490894 2_1:-67699780 Msa0219840:five_prime_UTR
TCTCTTTCTTAGCTAGCACT+TGG 0.498790 2_1:-67699799 Msa0219840:five_prime_UTR
AGTAGAGTAAATAAATGTCT+TGG 0.506117 2_1:+67698560 None:intergenic
AGGTTAAACACTTGAGATTG+TGG 0.506672 2_1:-67699352 Msa0219840:CDS
ATCACTTTCTATCCATTGGT+GGG 0.512449 2_1:-67698746 Msa0219840:CDS
AACATGAAGGCCTTATGACT+TGG 0.519268 2_1:+67699311 None:intergenic
CATGTTATAGCCAATTTGCT+AGG 0.526723 2_1:-67699254 Msa0219840:CDS
GTGTAGAGATCCAAGTCATA+AGG 0.530738 2_1:-67699321 Msa0219840:CDS
AAGAAACTAAATTAGAATTG+TGG 0.537544 2_1:+67698446 None:intergenic
GATTGAGCATGTTGGTGATA+GGG 0.548783 2_1:-67698815 Msa0219840:CDS
ATGTCAGTGGATTAGTGGAT+AGG 0.552511 2_1:+67698485 None:intergenic
ATATATATCAAAACAATGGT+GGG 0.552734 2_1:+67699846 None:intergenic
AATATATATCAAAACAATGG+TGG 0.553731 2_1:+67699845 None:intergenic
CATCACTTTCTATCCATTGG+TGG 0.556658 2_1:-67698747 Msa0219840:CDS
AAAATTAAAATAGTCCATCA+TGG 0.558416 2_1:+67698314 None:intergenic
GGCTGTTGGATTGAGCATGT+TGG 0.561637 2_1:-67698823 Msa0219840:CDS
AAAACAAACAACAGATCAAG+TGG 0.563378 2_1:-67698789 Msa0219840:CDS
CTAGCAAATTGGCTATAACA+TGG 0.567612 2_1:+67699255 None:intergenic
AGTCACTAATTAAGAGGCAG+TGG 0.571955 2_1:+67698674 None:intergenic
TATATTACCATGTTAAAATG+AGG 0.574693 2_1:+67699159 None:intergenic
AAAACACAAAATCCCACCAA+TGG 0.578066 2_1:+67698734 None:intergenic
TAGCAAATTGGCTATAACAT+GGG 0.592154 2_1:+67699256 None:intergenic
AGCTGAAATTGCTCAAAACA+AGG 0.596775 2_1:-67699655 Msa0219840:intron
TTACCATGTTAAAATGAGGA+TGG 0.599472 2_1:+67699163 None:intergenic
TGCAGCTAATCCAAACATGA+AGG 0.600785 2_1:+67699298 None:intergenic
AACAGATCAAGTGGTACTTG+TGG 0.611029 2_1:-67698780 Msa0219840:CDS
TCAAATATATATCAAAACAA+TGG 0.627954 2_1:+67699842 None:intergenic
GTTATAGCCAATTTGCTAGG+TGG 0.649884 2_1:-67699251 Msa0219840:CDS
TTTACTCTACTTGTACTATG+GGG 0.650853 2_1:-67698548 Msa0219840:three_prime_UTR
TTATCATGGATGTCACAGCT+GGG 0.651085 2_1:-67699692 Msa0219840:CDS
AACTAAATTAGAATTGTGGT+AGG 0.658381 2_1:+67698450 None:intergenic
GCACACACTACACATGTCAG+TGG 0.658680 2_1:+67698472 None:intergenic
AAGAAACACAGAATAGACCA+TGG 0.662268 2_1:+67698709 None:intergenic
CACCAATGGATAGAAAGTGA+TGG 0.663881 2_1:+67698748 None:intergenic
TAAGGAAACACATAGAATGG+AGG 0.696438 2_1:-67698652 Msa0219840:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTTTACAAAATC+AGG - chr2_1:67698842-67698861 Msa0219840:intron 10.0%
!! TTTGATAAACATTTAAAAAT+GGG + chr2_1:67699705-67699724 None:intergenic 10.0%
!! ATTTGATAAACATTTAAAAA+TGG + chr2_1:67699706-67699725 None:intergenic 10.0%
!!! TTATTTTATTTTACAAAATC+AGG - chr2_1:67698842-67698861 Msa0219840:intron 10.0%
!! TTTGATAAACATTTAAAAAT+GGG + chr2_1:67699705-67699724 None:intergenic 10.0%
!! ATTTGATAAACATTTAAAAA+TGG + chr2_1:67699706-67699725 None:intergenic 10.0%
!! TCAAATATATATCAAAACAA+TGG + chr2_1:67698375-67698394 None:intergenic 15.0%
!! AAAATTAATGTACATTATCA+TGG + chr2_1:67698766-67698785 None:intergenic 15.0%
!!! ATTTTATTTTAATACCATGA+TGG - chr2_1:67699886-67699905 Msa0219840:five_prime_UTR 15.0%
!! TCAAATATATATCAAAACAA+TGG + chr2_1:67698375-67698394 None:intergenic 15.0%
!! AAAATTAATGTACATTATCA+TGG + chr2_1:67698766-67698785 None:intergenic 15.0%
!!! ATTTTATTTTAATACCATGA+TGG - chr2_1:67699886-67699905 Msa0219840:five_prime_UTR 15.0%
!! ATATATATCAAAACAATGGT+GGG + chr2_1:67698371-67698390 None:intergenic 20.0%
!! AATATATATCAAAACAATGG+TGG + chr2_1:67698372-67698391 None:intergenic 20.0%
!!! GTTTTATAGAATTAGAAACA+TGG + chr2_1:67698604-67698623 None:intergenic 20.0%
!! TATATTACCATGTTAAAATG+AGG + chr2_1:67699058-67699077 None:intergenic 20.0%
!!! AAATTCAGTGTTTTAAAAAC+CGG + chr2_1:67699274-67699293 None:intergenic 20.0%
!! ATTTAGTAAAGCAACAAATT+TGG + chr2_1:67699630-67699649 None:intergenic 20.0%
!! AAGAAACTAAATTAGAATTG+TGG + chr2_1:67699771-67699790 None:intergenic 20.0%
!! ATATATATCAAAACAATGGT+GGG + chr2_1:67698371-67698390 None:intergenic 20.0%
!! AATATATATCAAAACAATGG+TGG + chr2_1:67698372-67698391 None:intergenic 20.0%
!!! GTTTTATAGAATTAGAAACA+TGG + chr2_1:67698604-67698623 None:intergenic 20.0%
!! TATATTACCATGTTAAAATG+AGG + chr2_1:67699058-67699077 None:intergenic 20.0%
!!! AAATTCAGTGTTTTAAAAAC+CGG + chr2_1:67699274-67699293 None:intergenic 20.0%
!! ATTTAGTAAAGCAACAAATT+TGG + chr2_1:67699630-67699649 None:intergenic 20.0%
!! AAGAAACTAAATTAGAATTG+TGG + chr2_1:67699771-67699790 None:intergenic 20.0%
! GAAATTAATTCTCTCAGAAA+TGG - chr2_1:67698463-67698482 Msa0219840:three_prime_UTR 25.0%
! TCAATCACAGTACAATTATT+AGG + chr2_1:67698724-67698743 None:intergenic 25.0%
! AGTAGAGTAAATAAATGTCT+TGG + chr2_1:67699657-67699676 None:intergenic 25.0%
! TATTTACTCTACTTGTACTA+TGG - chr2_1:67699664-67699683 Msa0219840:CDS 25.0%
! ATTTACTCTACTTGTACTAT+GGG - chr2_1:67699665-67699684 Msa0219840:CDS 25.0%
! AACTAAATTAGAATTGTGGT+AGG + chr2_1:67699767-67699786 None:intergenic 25.0%
!! GGTAATCTAAAATCTTTCAT+TGG + chr2_1:67699823-67699842 None:intergenic 25.0%
! GTAGAAAGATCTATAATCTA+TGG + chr2_1:67699844-67699863 None:intergenic 25.0%
! GAAATTAATTCTCTCAGAAA+TGG - chr2_1:67698463-67698482 Msa0219840:three_prime_UTR 25.0%
! TCAATCACAGTACAATTATT+AGG + chr2_1:67698724-67698743 None:intergenic 25.0%
! AGTAGAGTAAATAAATGTCT+TGG + chr2_1:67699657-67699676 None:intergenic 25.0%
! TATTTACTCTACTTGTACTA+TGG - chr2_1:67699664-67699683 Msa0219840:CDS 25.0%
! ATTTACTCTACTTGTACTAT+GGG - chr2_1:67699665-67699684 Msa0219840:CDS 25.0%
! AACTAAATTAGAATTGTGGT+AGG + chr2_1:67699767-67699786 None:intergenic 25.0%
!! GGTAATCTAAAATCTTTCAT+TGG + chr2_1:67699823-67699842 None:intergenic 25.0%
! GTAGAAAGATCTATAATCTA+TGG + chr2_1:67699844-67699863 None:intergenic 25.0%
! TTGGTAAAGAAAAGCATACT+TGG - chr2_1:67698434-67698453 Msa0219840:three_prime_UTR 30.0%
ATGTCTCTTGATTGTTATCA+TGG - chr2_1:67698508-67698527 Msa0219840:three_prime_UTR 30.0%
TAGCAAATTGGCTATAACAT+GGG + chr2_1:67698961-67698980 None:intergenic 30.0%
TTACCATGTTAAAATGAGGA+TGG + chr2_1:67699054-67699073 None:intergenic 30.0%
GAAAACAAGTAGAGGAATTA+GGG + chr2_1:67699082-67699101 None:intergenic 30.0%
ACCATGATAAAAAGTTCCAT+TGG - chr2_1:67699235-67699254 Msa0219840:CDS 30.0%
! ACCAATGGAACTTTTTATCA+TGG + chr2_1:67699239-67699258 None:intergenic 30.0%
CATTTATTAGTGAACTCTCA+TGG + chr2_1:67699321-67699340 None:intergenic 30.0%
CAACAGCGTAATTAAAACAA+TGG + chr2_1:67699357-67699376 None:intergenic 30.0%
!! TTTTAATTACGCTGTTGATC+AGG - chr2_1:67699360-67699379 Msa0219840:intron 30.0%
AAAACAAACAACAGATCAAG+TGG - chr2_1:67699425-67699444 Msa0219840:intron 30.0%
TTCCTTAGTCACTAATTAAG+AGG + chr2_1:67699549-67699568 None:intergenic 30.0%
TTTACTCTACTTGTACTATG+GGG - chr2_1:67699666-67699685 Msa0219840:CDS 30.0%
! TTGGTAAAGAAAAGCATACT+TGG - chr2_1:67698434-67698453 Msa0219840:three_prime_UTR 30.0%
ATGTCTCTTGATTGTTATCA+TGG - chr2_1:67698508-67698527 Msa0219840:three_prime_UTR 30.0%
TAGCAAATTGGCTATAACAT+GGG + chr2_1:67698961-67698980 None:intergenic 30.0%
TTACCATGTTAAAATGAGGA+TGG + chr2_1:67699054-67699073 None:intergenic 30.0%
GAAAACAAGTAGAGGAATTA+GGG + chr2_1:67699082-67699101 None:intergenic 30.0%
ACCATGATAAAAAGTTCCAT+TGG - chr2_1:67699235-67699254 Msa0219840:CDS 30.0%
! ACCAATGGAACTTTTTATCA+TGG + chr2_1:67699239-67699258 None:intergenic 30.0%
CATTTATTAGTGAACTCTCA+TGG + chr2_1:67699321-67699340 None:intergenic 30.0%
CAACAGCGTAATTAAAACAA+TGG + chr2_1:67699357-67699376 None:intergenic 30.0%
!! TTTTAATTACGCTGTTGATC+AGG - chr2_1:67699360-67699379 Msa0219840:intron 30.0%
AAAACAAACAACAGATCAAG+TGG - chr2_1:67699425-67699444 Msa0219840:intron 30.0%
TTCCTTAGTCACTAATTAAG+AGG + chr2_1:67699549-67699568 None:intergenic 30.0%
TTTACTCTACTTGTACTATG+GGG - chr2_1:67699666-67699685 Msa0219840:CDS 30.0%
AGCTGAAATTGCTCAAAACA+AGG - chr2_1:67698559-67698578 Msa0219840:three_prime_UTR 35.0%
AGGTTAAACACTTGAGATTG+TGG - chr2_1:67698862-67698881 Msa0219840:intron 35.0%
CTAGCAAATTGGCTATAACA+TGG + chr2_1:67698962-67698981 None:intergenic 35.0%
! CATGTTATAGCCAATTTGCT+AGG - chr2_1:67698960-67698979 Msa0219840:intron 35.0%
TTCAAAAGTCTTCACCCAAT+AGG - chr2_1:67699015-67699034 Msa0219840:intron 35.0%
CGAAAACAAGTAGAGGAATT+AGG + chr2_1:67699083-67699102 None:intergenic 35.0%
ACATTGTCGAAAACAAGTAG+AGG + chr2_1:67699090-67699109 None:intergenic 35.0%
TTCAACTGCTTGCAAAACTA+TGG + chr2_1:67699198-67699217 None:intergenic 35.0%
!! TAGTTTTGCAAGCAGTTGAA+CGG - chr2_1:67699198-67699217 Msa0219840:CDS 35.0%
!! CATTGGTTCAATATTCAGTC+CGG - chr2_1:67699252-67699271 Msa0219840:CDS 35.0%
ATCACTTTCTATCCATTGGT+GGG - chr2_1:67699468-67699487 Msa0219840:intron 35.0%
AAAACACAAAATCCCACCAA+TGG + chr2_1:67699483-67699502 None:intergenic 35.0%
AAGAAACACAGAATAGACCA+TGG + chr2_1:67699508-67699527 None:intergenic 35.0%
TGCCTCTTAATTAGTGACTA+AGG - chr2_1:67699544-67699563 Msa0219840:intron 35.0%
GACTAAGGAAACACATAGAA+TGG - chr2_1:67699559-67699578 Msa0219840:intron 35.0%
TAAGGAAACACATAGAATGG+AGG - chr2_1:67699562-67699581 Msa0219840:intron 35.0%
!!! GCTTTTGTGCTTTAGGAATT+TGG - chr2_1:67699599-67699618 Msa0219840:intron 35.0%
CTTTCATTGGACAATGACTT+TGG + chr2_1:67699810-67699829 None:intergenic 35.0%
AGCTGAAATTGCTCAAAACA+AGG - chr2_1:67698559-67698578 Msa0219840:three_prime_UTR 35.0%
AGGTTAAACACTTGAGATTG+TGG - chr2_1:67698862-67698881 Msa0219840:intron 35.0%
CTAGCAAATTGGCTATAACA+TGG + chr2_1:67698962-67698981 None:intergenic 35.0%
! CATGTTATAGCCAATTTGCT+AGG - chr2_1:67698960-67698979 Msa0219840:intron 35.0%
TTCAAAAGTCTTCACCCAAT+AGG - chr2_1:67699015-67699034 Msa0219840:intron 35.0%
CGAAAACAAGTAGAGGAATT+AGG + chr2_1:67699083-67699102 None:intergenic 35.0%
ACATTGTCGAAAACAAGTAG+AGG + chr2_1:67699090-67699109 None:intergenic 35.0%
TTCAACTGCTTGCAAAACTA+TGG + chr2_1:67699198-67699217 None:intergenic 35.0%
!! TAGTTTTGCAAGCAGTTGAA+CGG - chr2_1:67699198-67699217 Msa0219840:CDS 35.0%
!! CATTGGTTCAATATTCAGTC+CGG - chr2_1:67699252-67699271 Msa0219840:CDS 35.0%
ATCACTTTCTATCCATTGGT+GGG - chr2_1:67699468-67699487 Msa0219840:intron 35.0%
AAAACACAAAATCCCACCAA+TGG + chr2_1:67699483-67699502 None:intergenic 35.0%
AAGAAACACAGAATAGACCA+TGG + chr2_1:67699508-67699527 None:intergenic 35.0%
TGCCTCTTAATTAGTGACTA+AGG - chr2_1:67699544-67699563 Msa0219840:intron 35.0%
GACTAAGGAAACACATAGAA+TGG - chr2_1:67699559-67699578 Msa0219840:intron 35.0%
TAAGGAAACACATAGAATGG+AGG - chr2_1:67699562-67699581 Msa0219840:intron 35.0%
!!! GCTTTTGTGCTTTAGGAATT+TGG - chr2_1:67699599-67699618 Msa0219840:intron 35.0%
CTTTCATTGGACAATGACTT+TGG + chr2_1:67699810-67699829 None:intergenic 35.0%
TCTCTTTCTTAGCTAGCACT+TGG - chr2_1:67698415-67698434 Msa0219840:three_prime_UTR 40.0%
TCAGAAATGGCTAGAGAAGT+TGG - chr2_1:67698476-67698495 Msa0219840:three_prime_UTR 40.0%
TTATCATGGATGTCACAGCT+GGG - chr2_1:67698522-67698541 Msa0219840:three_prime_UTR 40.0%
GTGTAGAGATCCAAGTCATA+AGG - chr2_1:67698893-67698912 Msa0219840:intron 40.0%
! AACATGAAGGCCTTATGACT+TGG + chr2_1:67698906-67698925 None:intergenic 40.0%
AGTCATAAGGCCTTCATGTT+TGG - chr2_1:67698906-67698925 Msa0219840:intron 40.0%
TGCAGCTAATCCAAACATGA+AGG + chr2_1:67698919-67698938 None:intergenic 40.0%
!! GTTATAGCCAATTTGCTAGG+TGG - chr2_1:67698963-67698982 Msa0219840:intron 40.0%
!! TGGCCATCCTCATTTTAACA+TGG - chr2_1:67699048-67699067 Msa0219840:intron 40.0%
ACTATGAAACTGCACTGTCT+AGG - chr2_1:67699149-67699168 Msa0219840:intron 40.0%
CTATGAAACTGCACTGTCTA+GGG - chr2_1:67699150-67699169 Msa0219840:intron 40.0%
AGCAGTTGAACGGTTTAAAG+AGG - chr2_1:67699208-67699227 Msa0219840:CDS 40.0%
CGGACTGAATATTGAACCAA+TGG + chr2_1:67699254-67699273 None:intergenic 40.0%
! GCTGTTGATCAGGATTGTTT+TGG - chr2_1:67699370-67699389 Msa0219840:intron 40.0%
!!! ATCAGGATTGTTTTGGCTGT+TGG - chr2_1:67699377-67699396 Msa0219840:intron 40.0%
!! GATTGAGCATGTTGGTGATA+GGG - chr2_1:67699399-67699418 Msa0219840:intron 40.0%
AACAGATCAAGTGGTACTTG+TGG - chr2_1:67699434-67699453 Msa0219840:intron 40.0%
GACCATCACTTTCTATCCAT+TGG - chr2_1:67699464-67699483 Msa0219840:intron 40.0%
CACCAATGGATAGAAAGTGA+TGG + chr2_1:67699469-67699488 None:intergenic 40.0%
CATCACTTTCTATCCATTGG+TGG - chr2_1:67699467-67699486 Msa0219840:intron 40.0%
! GGGATTTTGTGTTTTGTCCA+TGG - chr2_1:67699488-67699507 Msa0219840:intron 40.0%
AGTCACTAATTAAGAGGCAG+TGG + chr2_1:67699543-67699562 None:intergenic 40.0%
!! TGCTCTTGCTTTTGTGCTTT+AGG - chr2_1:67699592-67699611 Msa0219840:intron 40.0%
!! ATGTCAGTGGATTAGTGGAT+AGG + chr2_1:67699732-67699751 None:intergenic 40.0%
!! TACACATGTCAGTGGATTAG+TGG + chr2_1:67699737-67699756 None:intergenic 40.0%
TCTCTTTCTTAGCTAGCACT+TGG - chr2_1:67698415-67698434 Msa0219840:three_prime_UTR 40.0%
TCAGAAATGGCTAGAGAAGT+TGG - chr2_1:67698476-67698495 Msa0219840:three_prime_UTR 40.0%
TTATCATGGATGTCACAGCT+GGG - chr2_1:67698522-67698541 Msa0219840:three_prime_UTR 40.0%
GTGTAGAGATCCAAGTCATA+AGG - chr2_1:67698893-67698912 Msa0219840:intron 40.0%
! AACATGAAGGCCTTATGACT+TGG + chr2_1:67698906-67698925 None:intergenic 40.0%
AGTCATAAGGCCTTCATGTT+TGG - chr2_1:67698906-67698925 Msa0219840:intron 40.0%
TGCAGCTAATCCAAACATGA+AGG + chr2_1:67698919-67698938 None:intergenic 40.0%
!! GTTATAGCCAATTTGCTAGG+TGG - chr2_1:67698963-67698982 Msa0219840:intron 40.0%
!! TGGCCATCCTCATTTTAACA+TGG - chr2_1:67699048-67699067 Msa0219840:intron 40.0%
ACTATGAAACTGCACTGTCT+AGG - chr2_1:67699149-67699168 Msa0219840:intron 40.0%
CTATGAAACTGCACTGTCTA+GGG - chr2_1:67699150-67699169 Msa0219840:intron 40.0%
AGCAGTTGAACGGTTTAAAG+AGG - chr2_1:67699208-67699227 Msa0219840:CDS 40.0%
CGGACTGAATATTGAACCAA+TGG + chr2_1:67699254-67699273 None:intergenic 40.0%
! GCTGTTGATCAGGATTGTTT+TGG - chr2_1:67699370-67699389 Msa0219840:intron 40.0%
!!! ATCAGGATTGTTTTGGCTGT+TGG - chr2_1:67699377-67699396 Msa0219840:intron 40.0%
!! GATTGAGCATGTTGGTGATA+GGG - chr2_1:67699399-67699418 Msa0219840:intron 40.0%
AACAGATCAAGTGGTACTTG+TGG - chr2_1:67699434-67699453 Msa0219840:intron 40.0%
GACCATCACTTTCTATCCAT+TGG - chr2_1:67699464-67699483 Msa0219840:intron 40.0%
CACCAATGGATAGAAAGTGA+TGG + chr2_1:67699469-67699488 None:intergenic 40.0%
CATCACTTTCTATCCATTGG+TGG - chr2_1:67699467-67699486 Msa0219840:intron 40.0%
! GGGATTTTGTGTTTTGTCCA+TGG - chr2_1:67699488-67699507 Msa0219840:intron 40.0%
AGTCACTAATTAAGAGGCAG+TGG + chr2_1:67699543-67699562 None:intergenic 40.0%
!! TGCTCTTGCTTTTGTGCTTT+AGG - chr2_1:67699592-67699611 Msa0219840:intron 40.0%
!! ATGTCAGTGGATTAGTGGAT+AGG + chr2_1:67699732-67699751 None:intergenic 40.0%
!! TACACATGTCAGTGGATTAG+TGG + chr2_1:67699737-67699756 None:intergenic 40.0%
GTTATCATGGATGTCACAGC+TGG - chr2_1:67698521-67698540 Msa0219840:three_prime_UTR 45.0%
ACCCAATAGGCAACTCTCAA+TGG - chr2_1:67699028-67699047 Msa0219840:intron 45.0%
GCCATTGAGAGTTGCCTATT+GGG + chr2_1:67699032-67699051 None:intergenic 45.0%
! AAACTGCACTGTCTAGGGTT+TGG - chr2_1:67699155-67699174 Msa0219840:intron 45.0%
!! GGATTGAGCATGTTGGTGAT+AGG - chr2_1:67699398-67699417 Msa0219840:intron 45.0%
CACAAAAGCAAGAGCAGAAG+TGG + chr2_1:67699588-67699607 None:intergenic 45.0%
GTTATCATGGATGTCACAGC+TGG - chr2_1:67698521-67698540 Msa0219840:three_prime_UTR 45.0%
ACCCAATAGGCAACTCTCAA+TGG - chr2_1:67699028-67699047 Msa0219840:intron 45.0%
GCCATTGAGAGTTGCCTATT+GGG + chr2_1:67699032-67699051 None:intergenic 45.0%
! AAACTGCACTGTCTAGGGTT+TGG - chr2_1:67699155-67699174 Msa0219840:intron 45.0%
!! GGATTGAGCATGTTGGTGAT+AGG - chr2_1:67699398-67699417 Msa0219840:intron 45.0%
CACAAAAGCAAGAGCAGAAG+TGG + chr2_1:67699588-67699607 None:intergenic 45.0%
GATGTCACAGCTGGGATTCT+TGG - chr2_1:67698530-67698549 Msa0219840:three_prime_UTR 50.0%
GGCCATTGAGAGTTGCCTAT+TGG + chr2_1:67699033-67699052 None:intergenic 50.0%
GGCTGTTGGATTGAGCATGT+TGG - chr2_1:67699391-67699410 Msa0219840:intron 50.0%
GCACACACTACACATGTCAG+TGG + chr2_1:67699745-67699764 None:intergenic 50.0%
GATGTCACAGCTGGGATTCT+TGG - chr2_1:67698530-67698549 Msa0219840:three_prime_UTR 50.0%
GGCCATTGAGAGTTGCCTAT+TGG + chr2_1:67699033-67699052 None:intergenic 50.0%
GGCTGTTGGATTGAGCATGT+TGG - chr2_1:67699391-67699410 Msa0219840:intron 50.0%
GCACACACTACACATGTCAG+TGG + chr2_1:67699745-67699764 None:intergenic 50.0%
!! GCCAATTTGCTAGGTGGCTG+CGG - chr2_1:67698969-67698988 Msa0219840:intron 55.0%
ACCGCAGCCACCTAGCAAAT+TGG + chr2_1:67698973-67698992 None:intergenic 55.0%
!! GCCAATTTGCTAGGTGGCTG+CGG - chr2_1:67698969-67698988 Msa0219840:intron 55.0%
ACCGCAGCCACCTAGCAAAT+TGG + chr2_1:67698973-67698992 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 67698320 67699916 67698320 ID=Msa0219840;Name=Msa0219840
chr2_1 mRNA 67698320 67699916 67698320 ID=Msa0219840-mRNA-1;Parent=Msa0219840;Name=Msa0219840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=162|1|1|1|1|1|3|363|158
chr2_1 exon 67698320 67698854 67698320 ID=Msa0219840-mRNA-1:exon:19163;Parent=Msa0219840-mRNA-1
chr2_1 exon 67699167 67699372 67699167 ID=Msa0219840-mRNA-1:exon:19162;Parent=Msa0219840-mRNA-1
chr2_1 exon 67699656 67699916 67699656 ID=Msa0219840-mRNA-1:exon:19161;Parent=Msa0219840-mRNA-1
chr2_1 five_prime_UTR 67699755 67699916 67699755 ID=Msa0219840-mRNA-1:five_prime_utr;Parent=Msa0219840-mRNA-1
chr2_1 CDS 67699656 67699754 67699656 ID=Msa0219840-mRNA-1:cds;Parent=Msa0219840-mRNA-1
chr2_1 CDS 67699167 67699372 67699167 ID=Msa0219840-mRNA-1:cds;Parent=Msa0219840-mRNA-1
chr2_1 CDS 67698683 67698854 67698683 ID=Msa0219840-mRNA-1:cds;Parent=Msa0219840-mRNA-1
chr2_1 three_prime_UTR 67698320 67698682 67698320 ID=Msa0219840-mRNA-1:three_prime_utr;Parent=Msa0219840-mRNA-1
Gene Sequence

>Msa0219840

ATGGCTAGAGAAGTTGGCATATTTTTATGTCTCTTGATTGTTATCATGGATGTCACAGCTGGGATTCTTGGCATCGAAGCTGAAATTGCTCAAAACAAGGTTAAACACTTGAGATTGTGGATATTTGAGTGTAGAGATCCAAGTCATAAGGCCTTCATGTTTGGATTAGCTGCATCAATACTTTTGTCTCTAGCCCATGTTATAGCCAATTTGCTAGGTGGCTGCGGTTGTTTTTGTCTTCAACAAGACATTCAAAAGTCTTCACCCAATAGGCAACTCTCAATGGCCATCCTCATTTTAACATGGATTGTTTTGGCTGTTGGATTGAGCATGTTGGTGATAGGGACTAAAACAAACAACAGATCAAGTGGTACTTGTGGTTTCACAGACCATCACTTTCTATCCATTGGTGGGATTTTGTGTTTTGTCCATGGTCTATTCTGTGTTTCTTATTACGTTTCTGCCACTGCCTCTTAA

Protein sequence

>Msa0219840

MAREVGIFLCLLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECRDPSHKAFMFGLAASILLSLAHVIANLLGGCGCFCLQQDIQKSSPNRQLSMAILILTWIVLAVGLSMLVIGTKTNNRSSGTCGFTDHHFLSIGGILCFVHGLFCVSYYVSATAS*