AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379940 MtrunA17_Chr8g0387781 96.653 239 8 0 1 239 1 239 5.80e-170 468
Msa1379940 MtrunA17_Chr5g0396971 79.167 240 40 1 1 240 1 230 3.14e-135 379
Msa1379940 MtrunA17_Chr4g0037391 69.264 231 59 2 1 229 1 221 1.61e-110 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379940 AT4G11150.1 73.418 237 53 1 1 237 1 227 4.54e-123 349
Msa1379940 AT1G64200.1 71.548 239 64 1 1 239 1 235 5.90e-121 344
Msa1379940 AT1G64200.2 71.429 231 62 1 1 231 1 227 2.37e-116 332
Msa1379940 AT3G08560.1 63.866 238 74 2 1 236 1 228 1.87e-102 297
Msa1379940 AT1G64200.3 70.312 192 53 1 1 192 1 188 2.53e-91 267

Find 56 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATATAAGTTTCACCTTGA+TGG 0.295071 tig0020315:+108653 Msa1379940:three_prime_UTR
TCTAAAAGATCTCATTGTTC+AGG 0.350211 tig0020315:+106074 Msa1379940:CDS
ACTAGTTGCAAATAATATAT+TGG 0.352674 tig0020315:+108687 Msa1379940:three_prime_UTR
CATCAAGGTGAAACTTATAT+TGG 0.372050 tig0020315:-108652 None:intergenic
CAGATCCGAAAGCAGCTCTT+TGG 0.391740 tig0020315:+108468 Msa1379940:intron
TTCGTGAGTGTTGTGATGCT+TGG 0.393565 tig0020315:-106723 None:intergenic
CAGCTCTGGTGGGGTGGTGT+TGG 0.395029 tig0020315:+107155 Msa1379940:intron
CAATGCAGCTGAATGCTTCT+CGG 0.400725 tig0020315:+105917 Msa1379940:CDS
TCGATTACATTTGTTGCCCC+TGG 0.437470 tig0020315:+108512 Msa1379940:three_prime_UTR
ACATTGAGGATATGTATTCC+AGG 0.438542 tig0020315:-108530 None:intergenic
TCGTGAGTGTTGTGATGCTT+GGG 0.455622 tig0020315:-106722 None:intergenic
GGCGGATAAATCTCACCATC+TGG 0.473875 tig0020315:-104753 None:intergenic
TGTTCTCATATCGTGTATGA+TGG 0.484068 tig0020315:+108607 Msa1379940:three_prime_UTR
ATACACGATATGAGAACAAC+AGG 0.485177 tig0020315:-108602 None:intergenic
GCTCACATTCAAAAGTTCCT+TGG 0.486133 tig0020315:-105995 None:intergenic
CTTGTCCAAAGAGCTGCTTT+CGG 0.496240 tig0020315:-108473 None:intergenic
GTGGTGTTGGCTTCTCGTGA+TGG 0.512785 tig0020315:+107168 Msa1379940:CDS
CAGGAAAACAAGTTCGTCAA+TGG 0.514811 tig0020315:-104682 None:intergenic
AATGAAAGAAGTTGCAGCCA+AGG 0.517165 tig0020315:+105978 Msa1379940:CDS
AAATACTCTTGATGCACGGC+TGG 0.517377 tig0020315:+107206 Msa1379940:CDS
CAATATCGAGAAGCTTCAGT+TGG 0.524663 tig0020315:+104945 Msa1379940:CDS
TGGAAAATTCAGCTCTGGTG+GGG 0.526027 tig0020315:+107146 Msa1379940:intron
ACAACACTCACGAACCCTAC+TGG 0.526388 tig0020315:+106732 Msa1379940:CDS
CTTCTGTCTTGTTGAGATGT+CGG 0.530658 tig0020315:+106579 Msa1379940:CDS
TGTGGAAAATTCAGCTCTGG+TGG 0.539041 tig0020315:+107144 Msa1379940:intron
TTCTCATATCGTGTATGATG+GGG 0.542615 tig0020315:+108609 Msa1379940:three_prime_UTR
TTGTGGTCAACAATGATCTC+TGG 0.546406 tig0020315:-106680 None:intergenic
TGTGCTGGATGCAGCTGCAC+AGG 0.546828 tig0020315:+106628 Msa1379940:CDS
GAACATGAACTTTACCAGTA+GGG 0.549069 tig0020315:-106746 None:intergenic
TTACATAAGCAATGACATTG+AGG 0.549681 tig0020315:-108544 None:intergenic
AAAATTCAGCTCTGGTGGGG+TGG 0.550856 tig0020315:+107149 Msa1379940:intron
TATCTTCAACACGGTGATGA+CGG 0.556951 tig0020315:-106017 None:intergenic
GTTCTCATATCGTGTATGAT+GGG 0.562196 tig0020315:+108608 Msa1379940:three_prime_UTR
CATTGAGGATATGTATTCCA+GGG 0.567671 tig0020315:-108529 None:intergenic
GATCTCTCTCTCTGCTGAAG+AGG 0.568633 tig0020315:+104801 Msa1379940:CDS
TCGGAAACATGACGTGCACT+TGG 0.572529 tig0020315:+106598 Msa1379940:CDS
AACAGTAAACATCACAACAT+TGG 0.572592 tig0020315:-108719 None:intergenic
GTGTTGTGATGCTTGGGCGC+AGG 0.574871 tig0020315:-106716 None:intergenic
TTGTGATGCTTGGGCGCAGG+TGG 0.576644 tig0020315:-106713 None:intergenic
CGACATCTCAACAAGACAGA+AGG 0.583156 tig0020315:-106578 None:intergenic
ATATATTATTTGCAACTAGT+CGG 0.594089 tig0020315:-108684 None:intergenic
GTGGAAAATTCAGCTCTGGT+GGG 0.597030 tig0020315:+107145 Msa1379940:intron
GCACTTGGTAGAACATGTGC+TGG 0.602448 tig0020315:+106613 Msa1379940:CDS
CTCTAAGCAAATCCACCAGA+TGG 0.604393 tig0020315:+104738 Msa1379940:CDS
AGCAGAGAGAGAGATCTCGC+TGG 0.607582 tig0020315:-104794 None:intergenic
AGTCGGAGAAAACACCATCA+AGG 0.635390 tig0020315:-108667 None:intergenic
TGGTCAACAATGATCTCTGG+TGG 0.640783 tig0020315:-106677 None:intergenic
TGAAACATATCAACTTGAGT+CGG 0.640927 tig0020315:+104659 Msa1379940:five_prime_UTR
AGATCAGACAAGAATATGAG+CGG 0.642819 tig0020315:+104986 Msa1379940:CDS
TCTCATATCGTGTATGATGG+GGG 0.650986 tig0020315:+108610 Msa1379940:three_prime_UTR
GGATAAATCTCACCATCTGG+TGG 0.662922 tig0020315:-104750 None:intergenic
CATGTAAAATATCTTCAACA+CGG 0.686965 tig0020315:-106026 None:intergenic
GTGAAAATACTCTTGATGCA+CGG 0.687449 tig0020315:+107202 Msa1379940:CDS
ATTGAGGATATGTATTCCAG+GGG 0.705670 tig0020315:-108528 None:intergenic
CAGGTGGAAGATAGACATTG+TGG 0.710884 tig0020315:-106697 None:intergenic
TCTTCTCCGAAAATGAACGA+CGG 0.753333 tig0020315:+104709 Msa1379940:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAAAAAAAAAATC+TGG + tig0020315:105659-105678 Msa1379940:intron 10.0%
!! ATCTACAAATAATATAAAAT+TGG - tig0020315:106226-106245 None:intergenic 10.0%
!!! TTTTTTTCAAAAAAAAAATC+TGG + tig0020315:105659-105678 Msa1379940:intron 10.0%
!! ATCTACAAATAATATAAAAT+TGG - tig0020315:106226-106245 None:intergenic 10.0%
!! AAGAAACAAAAAAAAAAAAC+AGG - tig0020315:104913-104932 None:intergenic 15.0%
!! ATTTCAGATATTGAATATAT+TGG + tig0020315:105186-105205 Msa1379940:intron 15.0%
!! TTTCAAATTATTATCTGTAT+CGG - tig0020315:105274-105293 None:intergenic 15.0%
!! TTCAAATGATAATTATATAC+TGG + tig0020315:106358-106377 Msa1379940:intron 15.0%
!!! TATTCTTCTGATATTATTTT+AGG + tig0020315:106469-106488 Msa1379940:intron 15.0%
!! AGACTTCTATTTAAATATTA+AGG + tig0020315:106770-106789 Msa1379940:intron 15.0%
!!! ATTCTAAACTTTTGAATTTT+TGG + tig0020315:107693-107712 Msa1379940:intron 15.0%
!!! ATTTTATGTATTTGGTTTAT+TGG + tig0020315:108236-108255 Msa1379940:intron 15.0%
!! AAGAAACAAAAAAAAAAAAC+AGG - tig0020315:104913-104932 None:intergenic 15.0%
!! ATTTCAGATATTGAATATAT+TGG + tig0020315:105186-105205 Msa1379940:intron 15.0%
!! TTTCAAATTATTATCTGTAT+CGG - tig0020315:105274-105293 None:intergenic 15.0%
!! TTCAAATGATAATTATATAC+TGG + tig0020315:106358-106377 Msa1379940:intron 15.0%
!!! TATTCTTCTGATATTATTTT+AGG + tig0020315:106469-106488 Msa1379940:intron 15.0%
!! AGACTTCTATTTAAATATTA+AGG + tig0020315:106770-106789 Msa1379940:intron 15.0%
!!! ATTCTAAACTTTTGAATTTT+TGG + tig0020315:107693-107712 Msa1379940:intron 15.0%
!!! ATTTTATGTATTTGGTTTAT+TGG + tig0020315:108236-108255 Msa1379940:intron 15.0%
!! AAGTAATTGAATGTAATCAA+AGG - tig0020315:105637-105656 None:intergenic 20.0%
!! TTGATATATTCTAATTTCTG+TGG + tig0020315:105868-105887 Msa1379940:intron 20.0%
!! CTAGTATATTCATGAAAAAT+TGG + tig0020315:106295-106314 Msa1379940:intron 20.0%
!! TTAAATATTAAGGAACTGTA+TGG + tig0020315:106780-106799 Msa1379940:intron 20.0%
!!! CATATTATTTTCAACTAGAA+AGG + tig0020315:107337-107356 Msa1379940:intron 20.0%
!! TTGTACCAAAAAAAAAAGAA+AGG + tig0020315:107370-107389 Msa1379940:intron 20.0%
!! TTGAAATATTGTACGTATTA+AGG + tig0020315:107490-107509 Msa1379940:intron 20.0%
!! TGAAATATTGTACGTATTAA+GGG + tig0020315:107491-107510 Msa1379940:intron 20.0%
!! TGAACAGAATATAATTTGAT+GGG - tig0020315:107845-107864 None:intergenic 20.0%
!!! AGATTATATTTTGTTGACTT+TGG + tig0020315:108144-108163 Msa1379940:intron 20.0%
!! ATTGTATAGAATGAAAACTT+TGG + tig0020315:108169-108188 Msa1379940:intron 20.0%
!!! ATGAAAACTTTGGTATTTTT+TGG + tig0020315:108179-108198 Msa1379940:intron 20.0%
!!! GAAATACTCCATTTTTTTAT+AGG + tig0020315:108578-108597 Msa1379940:three_prime_UTR 20.0%
!! ATATATTATTTGCAACTAGT+CGG - tig0020315:108687-108706 None:intergenic 20.0%
!! ACTAGTTGCAAATAATATAT+TGG + tig0020315:108687-108706 Msa1379940:three_prime_UTR 20.0%
!! AAGTAATTGAATGTAATCAA+AGG - tig0020315:105637-105656 None:intergenic 20.0%
!! TTGATATATTCTAATTTCTG+TGG + tig0020315:105868-105887 Msa1379940:intron 20.0%
!! CTAGTATATTCATGAAAAAT+TGG + tig0020315:106295-106314 Msa1379940:intron 20.0%
!! TTAAATATTAAGGAACTGTA+TGG + tig0020315:106780-106799 Msa1379940:intron 20.0%
!!! CATATTATTTTCAACTAGAA+AGG + tig0020315:107337-107356 Msa1379940:intron 20.0%
!! TTGTACCAAAAAAAAAAGAA+AGG + tig0020315:107370-107389 Msa1379940:intron 20.0%
!! TTGAAATATTGTACGTATTA+AGG + tig0020315:107490-107509 Msa1379940:intron 20.0%
!! TGAAATATTGTACGTATTAA+GGG + tig0020315:107491-107510 Msa1379940:intron 20.0%
!! TGAACAGAATATAATTTGAT+GGG - tig0020315:107845-107864 None:intergenic 20.0%
!!! AGATTATATTTTGTTGACTT+TGG + tig0020315:108144-108163 Msa1379940:intron 20.0%
!! ATTGTATAGAATGAAAACTT+TGG + tig0020315:108169-108188 Msa1379940:intron 20.0%
!!! ATGAAAACTTTGGTATTTTT+TGG + tig0020315:108179-108198 Msa1379940:intron 20.0%
!!! GAAATACTCCATTTTTTTAT+AGG + tig0020315:108578-108597 Msa1379940:three_prime_UTR 20.0%
!! ATATATTATTTGCAACTAGT+CGG - tig0020315:108687-108706 None:intergenic 20.0%
!! ACTAGTTGCAAATAATATAT+TGG + tig0020315:108687-108706 Msa1379940:three_prime_UTR 20.0%
! AAAGAGAATGATTAGAGAAA+TGG - tig0020315:104832-104851 None:intergenic 25.0%
!!! TTTTTTTTGTTTCTTCGTGT+AGG + tig0020315:104918-104937 Msa1379940:intron 25.0%
!! TTTTCTTTCGAATTTCAACT+TGG - tig0020315:105020-105039 None:intergenic 25.0%
! AATTGGTTGAAATTGAATTC+TGG + tig0020315:105131-105150 Msa1379940:intron 25.0%
! TATAACATTGAGATTGTGAT+CGG - tig0020315:105166-105185 None:intergenic 25.0%
! CAAAAAACACAATGAAGATA+TGG - tig0020315:105560-105579 None:intergenic 25.0%
! TACATGTCAGATTAAACTTA+AGG + tig0020315:105724-105743 Msa1379940:intron 25.0%
! TATTTCCAAAATATGATGTG+TGG + tig0020315:105752-105771 Msa1379940:intron 25.0%
! CATGTAAAATATCTTCAACA+CGG - tig0020315:106029-106048 None:intergenic 25.0%
!! TGTTGAAGATATTTTACATG+TGG + tig0020315:106029-106048 Msa1379940:CDS 25.0%
!! GTTGAAGATATTTTACATGT+GGG + tig0020315:106030-106049 Msa1379940:CDS 25.0%
! CTACAAATGATAAAGATACT+TGG - tig0020315:106153-106172 None:intergenic 25.0%
!! AGATTCTTGTTTACACTTAT+CGG + tig0020315:106171-106190 Msa1379940:intron 25.0%
!! TTTGAAACAATCAATGAGAA+TGG - tig0020315:106344-106363 None:intergenic 25.0%
! TGATAATTATATACTGGCAT+AGG + tig0020315:106364-106383 Msa1379940:intron 25.0%
!! CATGCTAACTTCAATTATTT+TGG - tig0020315:106396-106415 None:intergenic 25.0%
!!! AGTTAGCATGTTTAATTTTG+TGG + tig0020315:106406-106425 Msa1379940:intron 25.0%
!! TTGATTAGTTACACATATTC+TGG + tig0020315:106849-106868 Msa1379940:intron 25.0%
! AATCAAGAGTTTCAAACATA+AGG + tig0020315:106880-106899 Msa1379940:intron 25.0%
! CTGATATCTAATATTAATGC+AGG - tig0020315:107102-107121 None:intergenic 25.0%
! AAGAAAATACACATTGAGTA+AGG - tig0020315:107644-107663 None:intergenic 25.0%
!! TTACTCAATGTGTATTTTCT+TGG + tig0020315:107643-107662 Msa1379940:intron 25.0%
!! AATTGGTGAAAATGATCTTT+TGG - tig0020315:107782-107801 None:intergenic 25.0%
! AATATAATTTGATGGGAAGT+GGG - tig0020315:107838-107857 None:intergenic 25.0%
! GTGAACAGAATATAATTTGA+TGG - tig0020315:107846-107865 None:intergenic 25.0%
! AAATTATATTCTGTTCACCT+TGG + tig0020315:107848-107867 Msa1379940:intron 25.0%
!!! AGGAAAACTTTGGTATTTTT+TGG + tig0020315:107880-107899 Msa1379940:intron 25.0%
!!! GTTGTCTCATTTTATTTAGT+TGG + tig0020315:107929-107948 Msa1379940:intron 25.0%
!! TTTAGTTGGTTTATTAGTCT+TGG + tig0020315:107943-107962 Msa1379940:intron 25.0%
!!! TTAGTTGGTTTATTAGTCTT+GGG + tig0020315:107944-107963 Msa1379940:intron 25.0%
!! TTATTGTTTCTTCTGTTATG+TGG + tig0020315:108072-108091 Msa1379940:intron 25.0%
!! TATTGTTTCTTCTGTTATGT+GGG + tig0020315:108073-108092 Msa1379940:intron 25.0%
!! GTTGTCTCATTTTATGTATT+TGG + tig0020315:108228-108247 Msa1379940:intron 25.0%
! AGAAGAAACAAAAAAGAATG+TGG - tig0020315:108376-108395 None:intergenic 25.0%
!!! TTTGTTTCTTCTGTTTTATG+TGG + tig0020315:108384-108403 Msa1379940:intron 25.0%
!!! TTGTTTCTTCTGTTTTATGT+GGG + tig0020315:108385-108404 Msa1379940:intron 25.0%
! AAAGAGAATGATTAGAGAAA+TGG - tig0020315:104832-104851 None:intergenic 25.0%
!!! TTTTTTTTGTTTCTTCGTGT+AGG + tig0020315:104918-104937 Msa1379940:intron 25.0%
!! TTTTCTTTCGAATTTCAACT+TGG - tig0020315:105020-105039 None:intergenic 25.0%
! AATTGGTTGAAATTGAATTC+TGG + tig0020315:105131-105150 Msa1379940:intron 25.0%
! TATAACATTGAGATTGTGAT+CGG - tig0020315:105166-105185 None:intergenic 25.0%
! CAAAAAACACAATGAAGATA+TGG - tig0020315:105560-105579 None:intergenic 25.0%
! TACATGTCAGATTAAACTTA+AGG + tig0020315:105724-105743 Msa1379940:intron 25.0%
! TATTTCCAAAATATGATGTG+TGG + tig0020315:105752-105771 Msa1379940:intron 25.0%
! CATGTAAAATATCTTCAACA+CGG - tig0020315:106029-106048 None:intergenic 25.0%
!! TGTTGAAGATATTTTACATG+TGG + tig0020315:106029-106048 Msa1379940:CDS 25.0%
!! GTTGAAGATATTTTACATGT+GGG + tig0020315:106030-106049 Msa1379940:CDS 25.0%
! CTACAAATGATAAAGATACT+TGG - tig0020315:106153-106172 None:intergenic 25.0%
!! AGATTCTTGTTTACACTTAT+CGG + tig0020315:106171-106190 Msa1379940:intron 25.0%
!! TTTGAAACAATCAATGAGAA+TGG - tig0020315:106344-106363 None:intergenic 25.0%
! TGATAATTATATACTGGCAT+AGG + tig0020315:106364-106383 Msa1379940:intron 25.0%
!! CATGCTAACTTCAATTATTT+TGG - tig0020315:106396-106415 None:intergenic 25.0%
!!! AGTTAGCATGTTTAATTTTG+TGG + tig0020315:106406-106425 Msa1379940:intron 25.0%
!! TTGATTAGTTACACATATTC+TGG + tig0020315:106849-106868 Msa1379940:intron 25.0%
! AATCAAGAGTTTCAAACATA+AGG + tig0020315:106880-106899 Msa1379940:intron 25.0%
! CTGATATCTAATATTAATGC+AGG - tig0020315:107102-107121 None:intergenic 25.0%
! AAGAAAATACACATTGAGTA+AGG - tig0020315:107644-107663 None:intergenic 25.0%
!! TTACTCAATGTGTATTTTCT+TGG + tig0020315:107643-107662 Msa1379940:intron 25.0%
!! AATTGGTGAAAATGATCTTT+TGG - tig0020315:107782-107801 None:intergenic 25.0%
! AATATAATTTGATGGGAAGT+GGG - tig0020315:107838-107857 None:intergenic 25.0%
! GTGAACAGAATATAATTTGA+TGG - tig0020315:107846-107865 None:intergenic 25.0%
! AAATTATATTCTGTTCACCT+TGG + tig0020315:107848-107867 Msa1379940:intron 25.0%
!!! AGGAAAACTTTGGTATTTTT+TGG + tig0020315:107880-107899 Msa1379940:intron 25.0%
!!! GTTGTCTCATTTTATTTAGT+TGG + tig0020315:107929-107948 Msa1379940:intron 25.0%
!! TTTAGTTGGTTTATTAGTCT+TGG + tig0020315:107943-107962 Msa1379940:intron 25.0%
!!! TTAGTTGGTTTATTAGTCTT+GGG + tig0020315:107944-107963 Msa1379940:intron 25.0%
!! TTATTGTTTCTTCTGTTATG+TGG + tig0020315:108072-108091 Msa1379940:intron 25.0%
!! TATTGTTTCTTCTGTTATGT+GGG + tig0020315:108073-108092 Msa1379940:intron 25.0%
!! GTTGTCTCATTTTATGTATT+TGG + tig0020315:108228-108247 Msa1379940:intron 25.0%
! AGAAGAAACAAAAAAGAATG+TGG - tig0020315:108376-108395 None:intergenic 25.0%
!!! TTTGTTTCTTCTGTTTTATG+TGG + tig0020315:108384-108403 Msa1379940:intron 25.0%
!!! TTGTTTCTTCTGTTTTATGT+GGG + tig0020315:108385-108404 Msa1379940:intron 25.0%
TGAAACATATCAACTTGAGT+CGG + tig0020315:104659-104678 Msa1379940:five_prime_UTR 30.0%
ATTACTTTGACATTTGTCTG+TGG + tig0020315:105108-105127 Msa1379940:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + tig0020315:105305-105324 Msa1379940:intron 30.0%
AAGATATATGCTATGAAGCA+CGG - tig0020315:105394-105413 None:intergenic 30.0%
! AAGTTCCACACATCATATTT+TGG - tig0020315:105760-105779 None:intergenic 30.0%
! GAACAATGAGATCTTTTAGA+AGG - tig0020315:106074-106093 None:intergenic 30.0%
TCTAAAAGATCTCATTGTTC+AGG + tig0020315:106074-106093 Msa1379940:CDS 30.0%
TGCAAGATCAAACGATAATT+AGG - tig0020315:106125-106144 None:intergenic 30.0%
ATGAAAAATTGGAGTGATCA+GGG + tig0020315:106306-106325 Msa1379940:intron 30.0%
TCAATGAGAATGGTTCATTA+AGG - tig0020315:106334-106353 None:intergenic 30.0%
GAAGAATAAGTTCATGTAGA+GGG - tig0020315:106457-106476 None:intergenic 30.0%
AGAAGAATAAGTTCATGTAG+AGG - tig0020315:106458-106477 None:intergenic 30.0%
AAGTTGTATTAGTGTGTGTT+TGG + tig0020315:106938-106957 Msa1379940:intron 30.0%
AGTTGTATTAGTGTGTGTTT+GGG + tig0020315:106939-106958 Msa1379940:intron 30.0%
CAACTAATCACATGTTTAGA+TGG - tig0020315:107075-107094 None:intergenic 30.0%
AGCATAGCTGATTATATTTG+TGG + tig0020315:107126-107145 Msa1379940:intron 30.0%
TGCACAAAAAAAATTACCTC+CGG - tig0020315:107255-107274 None:intergenic 30.0%
!!! AGCTGCCTTTCTTTTTTTTT+TGG - tig0020315:107378-107397 None:intergenic 30.0%
AAGGATATTAGTATGCAACA+AGG + tig0020315:107543-107562 Msa1379940:intron 30.0%
AAATGTTAGAAGTTATCAGG+GGG - tig0020315:107609-107628 None:intergenic 30.0%
CAAATGTTAGAAGTTATCAG+GGG - tig0020315:107610-107629 None:intergenic 30.0%
GCAAATGTTAGAAGTTATCA+GGG - tig0020315:107611-107630 None:intergenic 30.0%
!!! AATTTTTGGCTTGAAAACCA+GGG + tig0020315:107707-107726 Msa1379940:intron 30.0%
!! TAACGGATTGATGAGAATAT+GGG - tig0020315:107811-107830 None:intergenic 30.0%
!! ATAACGGATTGATGAGAATA+TGG - tig0020315:107812-107831 None:intergenic 30.0%
ATATAATTTGATGGGAAGTG+GGG - tig0020315:107837-107856 None:intergenic 30.0%
GAATATAATTTGATGGGAAG+TGG - tig0020315:107839-107858 None:intergenic 30.0%
AAAAAACTACCACATATGTG+TGG + tig0020315:107985-108004 Msa1379940:intron 30.0%
GAAGAAACAATAAAACGATG+TGG - tig0020315:108065-108084 None:intergenic 30.0%
ATCTATAGCCAAATCTTCAT+TGG - tig0020315:108328-108347 None:intergenic 30.0%
AAAATAAACTGGTTAGCATC+CGG + tig0020315:108416-108435 Msa1379940:intron 30.0%
TTACATAAGCAATGACATTG+AGG - tig0020315:108547-108566 None:intergenic 30.0%
CAACAGGTCCTATAAAAAAA+TGG - tig0020315:108589-108608 None:intergenic 30.0%
CATCAAGGTGAAACTTATAT+TGG - tig0020315:108655-108674 None:intergenic 30.0%
CAATATAAGTTTCACCTTGA+TGG + tig0020315:108653-108672 Msa1379940:three_prime_UTR 30.0%
AACAGTAAACATCACAACAT+TGG - tig0020315:108722-108741 None:intergenic 30.0%
TGAAACATATCAACTTGAGT+CGG + tig0020315:104659-104678 Msa1379940:five_prime_UTR 30.0%
ATTACTTTGACATTTGTCTG+TGG + tig0020315:105108-105127 Msa1379940:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + tig0020315:105305-105324 Msa1379940:intron 30.0%
AAGATATATGCTATGAAGCA+CGG - tig0020315:105394-105413 None:intergenic 30.0%
! AAGTTCCACACATCATATTT+TGG - tig0020315:105760-105779 None:intergenic 30.0%
! GAACAATGAGATCTTTTAGA+AGG - tig0020315:106074-106093 None:intergenic 30.0%
TCTAAAAGATCTCATTGTTC+AGG + tig0020315:106074-106093 Msa1379940:CDS 30.0%
TGCAAGATCAAACGATAATT+AGG - tig0020315:106125-106144 None:intergenic 30.0%
ATGAAAAATTGGAGTGATCA+GGG + tig0020315:106306-106325 Msa1379940:intron 30.0%
TCAATGAGAATGGTTCATTA+AGG - tig0020315:106334-106353 None:intergenic 30.0%
GAAGAATAAGTTCATGTAGA+GGG - tig0020315:106457-106476 None:intergenic 30.0%
AGAAGAATAAGTTCATGTAG+AGG - tig0020315:106458-106477 None:intergenic 30.0%
AAGTTGTATTAGTGTGTGTT+TGG + tig0020315:106938-106957 Msa1379940:intron 30.0%
AGTTGTATTAGTGTGTGTTT+GGG + tig0020315:106939-106958 Msa1379940:intron 30.0%
CAACTAATCACATGTTTAGA+TGG - tig0020315:107075-107094 None:intergenic 30.0%
AGCATAGCTGATTATATTTG+TGG + tig0020315:107126-107145 Msa1379940:intron 30.0%
TGCACAAAAAAAATTACCTC+CGG - tig0020315:107255-107274 None:intergenic 30.0%
!!! AGCTGCCTTTCTTTTTTTTT+TGG - tig0020315:107378-107397 None:intergenic 30.0%
AAGGATATTAGTATGCAACA+AGG + tig0020315:107543-107562 Msa1379940:intron 30.0%
AAATGTTAGAAGTTATCAGG+GGG - tig0020315:107609-107628 None:intergenic 30.0%
CAAATGTTAGAAGTTATCAG+GGG - tig0020315:107610-107629 None:intergenic 30.0%
GCAAATGTTAGAAGTTATCA+GGG - tig0020315:107611-107630 None:intergenic 30.0%
!!! AATTTTTGGCTTGAAAACCA+GGG + tig0020315:107707-107726 Msa1379940:intron 30.0%
!! TAACGGATTGATGAGAATAT+GGG - tig0020315:107811-107830 None:intergenic 30.0%
!! ATAACGGATTGATGAGAATA+TGG - tig0020315:107812-107831 None:intergenic 30.0%
ATATAATTTGATGGGAAGTG+GGG - tig0020315:107837-107856 None:intergenic 30.0%
GAATATAATTTGATGGGAAG+TGG - tig0020315:107839-107858 None:intergenic 30.0%
AAAAAACTACCACATATGTG+TGG + tig0020315:107985-108004 Msa1379940:intron 30.0%
GAAGAAACAATAAAACGATG+TGG - tig0020315:108065-108084 None:intergenic 30.0%
ATCTATAGCCAAATCTTCAT+TGG - tig0020315:108328-108347 None:intergenic 30.0%
AAAATAAACTGGTTAGCATC+CGG + tig0020315:108416-108435 Msa1379940:intron 30.0%
TTACATAAGCAATGACATTG+AGG - tig0020315:108547-108566 None:intergenic 30.0%
CAACAGGTCCTATAAAAAAA+TGG - tig0020315:108589-108608 None:intergenic 30.0%
CATCAAGGTGAAACTTATAT+TGG - tig0020315:108655-108674 None:intergenic 30.0%
CAATATAAGTTTCACCTTGA+TGG + tig0020315:108653-108672 Msa1379940:three_prime_UTR 30.0%
AACAGTAAACATCACAACAT+TGG - tig0020315:108722-108741 None:intergenic 30.0%
GCATTGAAATTTGATCCTCT+CGG + tig0020315:104875-104894 Msa1379940:intron 35.0%
AGATCAGACAAGAATATGAG+CGG + tig0020315:104986-105005 Msa1379940:CDS 35.0%
TTGACATTTGTCTGTGGAAT+TGG + tig0020315:105114-105133 Msa1379940:intron 35.0%
GGCATATATCCTATTAAGCA+CGG + tig0020315:105207-105226 Msa1379940:intron 35.0%
TATCCTATTAAGCACGGATA+CGG + tig0020315:105213-105232 Msa1379940:intron 35.0%
ATTTGCCAAAGCTTGATTTC+TGG + tig0020315:105466-105485 Msa1379940:intron 35.0%
AATGACCAGAAATCAAGCTT+TGG - tig0020315:105474-105493 None:intergenic 35.0%
ATGGAAGACGTGTTATATGT+CGG + tig0020315:105600-105619 Msa1379940:intron 35.0%
GAATGTAATCAAAGGCAAGT+TGG - tig0020315:105629-105648 None:intergenic 35.0%
CATGAAAAATTGGAGTGATC+AGG + tig0020315:106305-106324 Msa1379940:intron 35.0%
TGAAAAATTGGAGTGATCAG+GGG + tig0020315:106307-106326 Msa1379940:intron 35.0%
GAACATGAACTTTACCAGTA+GGG - tig0020315:106749-106768 None:intergenic 35.0%
AGAACATGAACTTTACCAGT+AGG - tig0020315:106750-106769 None:intergenic 35.0%
ACTGTATGGATCTGTTAATC+AGG + tig0020315:106794-106813 Msa1379940:intron 35.0%
CTGTATGGATCTGTTAATCA+GGG + tig0020315:106795-106814 Msa1379940:intron 35.0%
TGCTCAGTCAACTAAAAACA+CGG - tig0020315:106909-106928 None:intergenic 35.0%
TAAATCACGACAGTACCATA+TGG + tig0020315:106970-106989 Msa1379940:intron 35.0%
ATTTGTGGAAAATTCAGCTC+TGG + tig0020315:107141-107160 Msa1379940:intron 35.0%
GTGAAAATACTCTTGATGCA+CGG + tig0020315:107202-107221 Msa1379940:CDS 35.0%
GTATTAAGGGTAAGATAGCT+GGG + tig0020315:107504-107523 Msa1379940:intron 35.0%
TATTAAGGGTAAGATAGCTG+GGG + tig0020315:107505-107524 Msa1379940:intron 35.0%
CGCAAATGTTAGAAGTTATC+AGG - tig0020315:107612-107631 None:intergenic 35.0%
!!! GAATTTTTGGCTTGAAAACC+AGG + tig0020315:107706-107725 Msa1379940:intron 35.0%
GAGCAGTATAGCAAATACAA+AGG - tig0020315:107760-107779 None:intergenic 35.0%
GAGAATATGGGAGGAATAAT+TGG - tig0020315:107799-107818 None:intergenic 35.0%
TCCTGTTTACGAGAATATGT+GGG + tig0020315:107907-107926 Msa1379940:intron 35.0%
! CAAAGGATGATTTGGCAAAT+AGG + tig0020315:108010-108029 Msa1379940:intron 35.0%
GGTCATATGACAATCAAAGT+TGG + tig0020315:108031-108050 Msa1379940:intron 35.0%
TGACAATCAAAGTTGGCAAT+AGG + tig0020315:108038-108057 Msa1379940:intron 35.0%
!!! TTTTTTGGAGTGTCCTATGT+AGG + tig0020315:108194-108213 Msa1379940:intron 35.0%
!! GGGAAGTGTTGAAAATAAAC+TGG + tig0020315:108405-108424 Msa1379940:intron 35.0%
ATTGAGGATATGTATTCCAG+GGG - tig0020315:108531-108550 None:intergenic 35.0%
CATTGAGGATATGTATTCCA+GGG - tig0020315:108532-108551 None:intergenic 35.0%
ACATTGAGGATATGTATTCC+AGG - tig0020315:108533-108552 None:intergenic 35.0%
ATACACGATATGAGAACAAC+AGG - tig0020315:108605-108624 None:intergenic 35.0%
TGTTCTCATATCGTGTATGA+TGG + tig0020315:108607-108626 Msa1379940:three_prime_UTR 35.0%
GTTCTCATATCGTGTATGAT+GGG + tig0020315:108608-108627 Msa1379940:three_prime_UTR 35.0%
TTCTCATATCGTGTATGATG+GGG + tig0020315:108609-108628 Msa1379940:three_prime_UTR 35.0%
GCATTGAAATTTGATCCTCT+CGG + tig0020315:104875-104894 Msa1379940:intron 35.0%
AGATCAGACAAGAATATGAG+CGG + tig0020315:104986-105005 Msa1379940:CDS 35.0%
TTGACATTTGTCTGTGGAAT+TGG + tig0020315:105114-105133 Msa1379940:intron 35.0%
GGCATATATCCTATTAAGCA+CGG + tig0020315:105207-105226 Msa1379940:intron 35.0%
TATCCTATTAAGCACGGATA+CGG + tig0020315:105213-105232 Msa1379940:intron 35.0%
ATTTGCCAAAGCTTGATTTC+TGG + tig0020315:105466-105485 Msa1379940:intron 35.0%
AATGACCAGAAATCAAGCTT+TGG - tig0020315:105474-105493 None:intergenic 35.0%
ATGGAAGACGTGTTATATGT+CGG + tig0020315:105600-105619 Msa1379940:intron 35.0%
GAATGTAATCAAAGGCAAGT+TGG - tig0020315:105629-105648 None:intergenic 35.0%
CATGAAAAATTGGAGTGATC+AGG + tig0020315:106305-106324 Msa1379940:intron 35.0%
TGAAAAATTGGAGTGATCAG+GGG + tig0020315:106307-106326 Msa1379940:intron 35.0%
GAACATGAACTTTACCAGTA+GGG - tig0020315:106749-106768 None:intergenic 35.0%
AGAACATGAACTTTACCAGT+AGG - tig0020315:106750-106769 None:intergenic 35.0%
ACTGTATGGATCTGTTAATC+AGG + tig0020315:106794-106813 Msa1379940:intron 35.0%
CTGTATGGATCTGTTAATCA+GGG + tig0020315:106795-106814 Msa1379940:intron 35.0%
TGCTCAGTCAACTAAAAACA+CGG - tig0020315:106909-106928 None:intergenic 35.0%
TAAATCACGACAGTACCATA+TGG + tig0020315:106970-106989 Msa1379940:intron 35.0%
ATTTGTGGAAAATTCAGCTC+TGG + tig0020315:107141-107160 Msa1379940:intron 35.0%
GTGAAAATACTCTTGATGCA+CGG + tig0020315:107202-107221 Msa1379940:CDS 35.0%
GTATTAAGGGTAAGATAGCT+GGG + tig0020315:107504-107523 Msa1379940:intron 35.0%
TATTAAGGGTAAGATAGCTG+GGG + tig0020315:107505-107524 Msa1379940:intron 35.0%
CGCAAATGTTAGAAGTTATC+AGG - tig0020315:107612-107631 None:intergenic 35.0%
!!! GAATTTTTGGCTTGAAAACC+AGG + tig0020315:107706-107725 Msa1379940:intron 35.0%
GAGCAGTATAGCAAATACAA+AGG - tig0020315:107760-107779 None:intergenic 35.0%
GAGAATATGGGAGGAATAAT+TGG - tig0020315:107799-107818 None:intergenic 35.0%
TCCTGTTTACGAGAATATGT+GGG + tig0020315:107907-107926 Msa1379940:intron 35.0%
! CAAAGGATGATTTGGCAAAT+AGG + tig0020315:108010-108029 Msa1379940:intron 35.0%
GGTCATATGACAATCAAAGT+TGG + tig0020315:108031-108050 Msa1379940:intron 35.0%
TGACAATCAAAGTTGGCAAT+AGG + tig0020315:108038-108057 Msa1379940:intron 35.0%
!!! TTTTTTGGAGTGTCCTATGT+AGG + tig0020315:108194-108213 Msa1379940:intron 35.0%
!! GGGAAGTGTTGAAAATAAAC+TGG + tig0020315:108405-108424 Msa1379940:intron 35.0%
ATTGAGGATATGTATTCCAG+GGG - tig0020315:108531-108550 None:intergenic 35.0%
CATTGAGGATATGTATTCCA+GGG - tig0020315:108532-108551 None:intergenic 35.0%
ACATTGAGGATATGTATTCC+AGG - tig0020315:108533-108552 None:intergenic 35.0%
ATACACGATATGAGAACAAC+AGG - tig0020315:108605-108624 None:intergenic 35.0%
TGTTCTCATATCGTGTATGA+TGG + tig0020315:108607-108626 Msa1379940:three_prime_UTR 35.0%
GTTCTCATATCGTGTATGAT+GGG + tig0020315:108608-108627 Msa1379940:three_prime_UTR 35.0%
TTCTCATATCGTGTATGATG+GGG + tig0020315:108609-108628 Msa1379940:three_prime_UTR 35.0%
CAGGAAAACAAGTTCGTCAA+TGG - tig0020315:104685-104704 None:intergenic 40.0%
TCTTCTCCGAAAATGAACGA+CGG + tig0020315:104709-104728 Msa1379940:exon 40.0%
! ACATCACCGTCGTTCATTTT+CGG - tig0020315:104718-104737 None:intergenic 40.0%
! CTTTTTCTTCAGCTTCTTGG+CGG - tig0020315:104774-104793 None:intergenic 40.0%
!! TGGCTTTTTCTTCAGCTTCT+TGG - tig0020315:104777-104796 None:intergenic 40.0%
CAATATCGAGAAGCTTCAGT+TGG + tig0020315:104945-104964 Msa1379940:CDS 40.0%
! TTGTGTCACTATCACATGCA+AGG - tig0020315:105428-105447 None:intergenic 40.0%
!! GATTTCTGGTCATTGTCTAG+TGG + tig0020315:105480-105499 Msa1379940:intron 40.0%
TGTAGAACTGACACTTCTGA+TGG + tig0020315:105581-105600 Msa1379940:intron 40.0%
ACTCACTGCCACAAACAATT+GGG - tig0020315:105894-105913 None:intergenic 40.0%
TACTCACTGCCACAAACAAT+TGG - tig0020315:105895-105914 None:intergenic 40.0%
AATGAAAGAAGTTGCAGCCA+AGG + tig0020315:105978-105997 Msa1379940:CDS 40.0%
GCTCACATTCAAAAGTTCCT+TGG - tig0020315:105998-106017 None:intergenic 40.0%
TATCTTCAACACGGTGATGA+CGG - tig0020315:106020-106039 None:intergenic 40.0%
AGTTCATGTAGAGGGAAAGA+GGG - tig0020315:106449-106468 None:intergenic 40.0%
AAGTTCATGTAGAGGGAAAG+AGG - tig0020315:106450-106469 None:intergenic 40.0%
ACATACTTGTGCATAGAAGG+CGG - tig0020315:106496-106515 None:intergenic 40.0%
TCCACATACTTGTGCATAGA+AGG - tig0020315:106499-106518 None:intergenic 40.0%
TATGCACAAGTATGTGGACT+AGG + tig0020315:106501-106520 Msa1379940:intron 40.0%
! CTTCTGTCTTGTTGAGATGT+CGG + tig0020315:106579-106598 Msa1379940:CDS 40.0%
!! CAGGAGTATTCTGAAAAAGC+AGG + tig0020315:106647-106666 Msa1379940:CDS 40.0%
TTGTGGTCAACAATGATCTC+TGG - tig0020315:106683-106702 None:intergenic 40.0%
TGTAGAGTCGTTTGACCATA+TGG - tig0020315:106988-107007 None:intergenic 40.0%
AGTGTTCCGTAAAAAGCTTC+CGG + tig0020315:107233-107252 Msa1379940:CDS 40.0%
! TTACCTCCGGAAGCTTTTTA+CGG - tig0020315:107242-107261 None:intergenic 40.0%
CGTATTAAGGGTAAGATAGC+TGG + tig0020315:107503-107522 Msa1379940:intron 40.0%
! AAAGGTGCAAACAGAGAGAA+GGG - tig0020315:107742-107761 None:intergenic 40.0%
TTCTGTTCACCTTGGATATC+TGG + tig0020315:107856-107875 Msa1379940:intron 40.0%
TCTGTTCACCTTGGATATCT+GGG + tig0020315:107857-107876 Msa1379940:intron 40.0%
GATATCTGGGAGGAAAACTT+TGG + tig0020315:107870-107889 Msa1379940:intron 40.0%
GTCCTGTTTACGAGAATATG+TGG + tig0020315:107906-107925 Msa1379940:intron 40.0%
ACCCACATATTCTCGTAAAC+AGG - tig0020315:107911-107930 None:intergenic 40.0%
TGGGTGATGTTGAAAATGAC+TGG + tig0020315:108092-108111 Msa1379940:intron 40.0%
! GAAAATGACTGGTTAGCATC+TGG + tig0020315:108103-108122 Msa1379940:intron 40.0%
TCCTATGTAGGAGAATACGA+GGG + tig0020315:108206-108225 Msa1379940:intron 40.0%
!!! GGTCTTCTGCTATTTTGTCT+TGG + tig0020315:108257-108276 Msa1379940:intron 40.0%
CACATGAGTGCAAACATATG+TGG - tig0020315:108300-108319 None:intergenic 40.0%
CATATGTTTGCACTCATGTG+TGG + tig0020315:108300-108319 Msa1379940:intron 40.0%
CGAGAAACTTCATTAGACAC+CGG - tig0020315:108438-108457 None:intergenic 40.0%
TCTCATATCGTGTATGATGG+GGG + tig0020315:108610-108629 Msa1379940:three_prime_UTR 40.0%
CAGGAAAACAAGTTCGTCAA+TGG - tig0020315:104685-104704 None:intergenic 40.0%
TCTTCTCCGAAAATGAACGA+CGG + tig0020315:104709-104728 Msa1379940:exon 40.0%
! ACATCACCGTCGTTCATTTT+CGG - tig0020315:104718-104737 None:intergenic 40.0%
! CTTTTTCTTCAGCTTCTTGG+CGG - tig0020315:104774-104793 None:intergenic 40.0%
!! TGGCTTTTTCTTCAGCTTCT+TGG - tig0020315:104777-104796 None:intergenic 40.0%
CAATATCGAGAAGCTTCAGT+TGG + tig0020315:104945-104964 Msa1379940:CDS 40.0%
! TTGTGTCACTATCACATGCA+AGG - tig0020315:105428-105447 None:intergenic 40.0%
!! GATTTCTGGTCATTGTCTAG+TGG + tig0020315:105480-105499 Msa1379940:intron 40.0%
TGTAGAACTGACACTTCTGA+TGG + tig0020315:105581-105600 Msa1379940:intron 40.0%
ACTCACTGCCACAAACAATT+GGG - tig0020315:105894-105913 None:intergenic 40.0%
TACTCACTGCCACAAACAAT+TGG - tig0020315:105895-105914 None:intergenic 40.0%
AATGAAAGAAGTTGCAGCCA+AGG + tig0020315:105978-105997 Msa1379940:CDS 40.0%
GCTCACATTCAAAAGTTCCT+TGG - tig0020315:105998-106017 None:intergenic 40.0%
TATCTTCAACACGGTGATGA+CGG - tig0020315:106020-106039 None:intergenic 40.0%
AGTTCATGTAGAGGGAAAGA+GGG - tig0020315:106449-106468 None:intergenic 40.0%
AAGTTCATGTAGAGGGAAAG+AGG - tig0020315:106450-106469 None:intergenic 40.0%
ACATACTTGTGCATAGAAGG+CGG - tig0020315:106496-106515 None:intergenic 40.0%
TCCACATACTTGTGCATAGA+AGG - tig0020315:106499-106518 None:intergenic 40.0%
TATGCACAAGTATGTGGACT+AGG + tig0020315:106501-106520 Msa1379940:intron 40.0%
! CTTCTGTCTTGTTGAGATGT+CGG + tig0020315:106579-106598 Msa1379940:CDS 40.0%
!! CAGGAGTATTCTGAAAAAGC+AGG + tig0020315:106647-106666 Msa1379940:CDS 40.0%
TTGTGGTCAACAATGATCTC+TGG - tig0020315:106683-106702 None:intergenic 40.0%
TGTAGAGTCGTTTGACCATA+TGG - tig0020315:106988-107007 None:intergenic 40.0%
AGTGTTCCGTAAAAAGCTTC+CGG + tig0020315:107233-107252 Msa1379940:CDS 40.0%
! TTACCTCCGGAAGCTTTTTA+CGG - tig0020315:107242-107261 None:intergenic 40.0%
CGTATTAAGGGTAAGATAGC+TGG + tig0020315:107503-107522 Msa1379940:intron 40.0%
! AAAGGTGCAAACAGAGAGAA+GGG - tig0020315:107742-107761 None:intergenic 40.0%
TTCTGTTCACCTTGGATATC+TGG + tig0020315:107856-107875 Msa1379940:intron 40.0%
TCTGTTCACCTTGGATATCT+GGG + tig0020315:107857-107876 Msa1379940:intron 40.0%
GATATCTGGGAGGAAAACTT+TGG + tig0020315:107870-107889 Msa1379940:intron 40.0%
GTCCTGTTTACGAGAATATG+TGG + tig0020315:107906-107925 Msa1379940:intron 40.0%
ACCCACATATTCTCGTAAAC+AGG - tig0020315:107911-107930 None:intergenic 40.0%
TGGGTGATGTTGAAAATGAC+TGG + tig0020315:108092-108111 Msa1379940:intron 40.0%
! GAAAATGACTGGTTAGCATC+TGG + tig0020315:108103-108122 Msa1379940:intron 40.0%
TCCTATGTAGGAGAATACGA+GGG + tig0020315:108206-108225 Msa1379940:intron 40.0%
!!! GGTCTTCTGCTATTTTGTCT+TGG + tig0020315:108257-108276 Msa1379940:intron 40.0%
CACATGAGTGCAAACATATG+TGG - tig0020315:108300-108319 None:intergenic 40.0%
CATATGTTTGCACTCATGTG+TGG + tig0020315:108300-108319 Msa1379940:intron 40.0%
CGAGAAACTTCATTAGACAC+CGG - tig0020315:108438-108457 None:intergenic 40.0%
TCTCATATCGTGTATGATGG+GGG + tig0020315:108610-108629 Msa1379940:three_prime_UTR 40.0%
! CATTTTCGGAGAAGATCGAC+AGG - tig0020315:104704-104723 None:intergenic 45.0%
CTCTAAGCAAATCCACCAGA+TGG + tig0020315:104738-104757 Msa1379940:CDS 45.0%
GGATAAATCTCACCATCTGG+TGG - tig0020315:104753-104772 None:intergenic 45.0%
AGGAGAATTACATTGCCGAG+AGG - tig0020315:104893-104912 None:intergenic 45.0%
TGTCCGTATCCGTGCTTAAT+AGG - tig0020315:105219-105238 None:intergenic 45.0%
ATTAAGCACGGATACGGACA+CGG + tig0020315:105219-105238 Msa1379940:intron 45.0%
!! ATGAAGCACTGAGAGAGACA+CGG - tig0020315:105705-105724 None:intergenic 45.0%
TTCTGTGGCCCAATTGTTTG+TGG + tig0020315:105883-105902 Msa1379940:intron 45.0%
CAATGCAGCTGAATGCTTCT+CGG + tig0020315:105917-105936 Msa1379940:CDS 45.0%
ATGTAGAGGGAAAGAGGGAA+GGG - tig0020315:106444-106463 None:intergenic 45.0%
GCCTTCTATGCACAAGTATG+TGG + tig0020315:106495-106514 Msa1379940:intron 45.0%
CGACATCTCAACAAGACAGA+AGG - tig0020315:106581-106600 None:intergenic 45.0%
TGGTCAACAATGATCTCTGG+TGG - tig0020315:106680-106699 None:intergenic 45.0%
CAGGTGGAAGATAGACATTG+TGG - tig0020315:106700-106719 None:intergenic 45.0%
! TCGTGAGTGTTGTGATGCTT+GGG - tig0020315:106725-106744 None:intergenic 45.0%
! TTCGTGAGTGTTGTGATGCT+TGG - tig0020315:106726-106745 None:intergenic 45.0%
CGTAAGAAAGCCTTCTCTGA+TGG + tig0020315:107049-107068 Msa1379940:intron 45.0%
GTTTAGATGGCCATCAGAGA+AGG - tig0020315:107062-107081 None:intergenic 45.0%
! TGTGGAAAATTCAGCTCTGG+TGG + tig0020315:107144-107163 Msa1379940:intron 45.0%
! GTGGAAAATTCAGCTCTGGT+GGG + tig0020315:107145-107164 Msa1379940:intron 45.0%
! TGGAAAATTCAGCTCTGGTG+GGG + tig0020315:107146-107165 Msa1379940:intron 45.0%
AAATACTCTTGATGCACGGC+TGG + tig0020315:107206-107225 Msa1379940:CDS 45.0%
AAGGTGCAAACAGAGAGAAG+GGG - tig0020315:107741-107760 None:intergenic 45.0%
! CAAAGGTGCAAACAGAGAGA+AGG - tig0020315:107743-107762 None:intergenic 45.0%
CGGATTGATGAGAATATGGG+AGG - tig0020315:107808-107827 None:intergenic 45.0%
! GTTTTCCTCCCAGATATCCA+AGG - tig0020315:107868-107887 None:intergenic 45.0%
ACCACATATGTGTGGCTCAA+AGG + tig0020315:107993-108012 Msa1379940:intron 45.0%
TCCTTTGAGCCACACATATG+TGG - tig0020315:107997-108016 None:intergenic 45.0%
GTGTGGCTCAAAGGATGATT+TGG + tig0020315:108002-108021 Msa1379940:intron 45.0%
GTCCTATGTAGGAGAATACG+AGG + tig0020315:108205-108224 Msa1379940:intron 45.0%
ACCCTCGTATTCTCCTACAT+AGG - tig0020315:108210-108229 None:intergenic 45.0%
GTGTGGCTCCAATGAAGATT+TGG + tig0020315:108317-108336 Msa1379940:intron 45.0%
! CTTGTCCAAAGAGCTGCTTT+CGG - tig0020315:108476-108495 None:intergenic 45.0%
! TCGATTACATTTGTTGCCCC+TGG + tig0020315:108512-108531 Msa1379940:three_prime_UTR 45.0%
AGTCGGAGAAAACACCATCA+AGG - tig0020315:108670-108689 None:intergenic 45.0%
! CATTTTCGGAGAAGATCGAC+AGG - tig0020315:104704-104723 None:intergenic 45.0%
CTCTAAGCAAATCCACCAGA+TGG + tig0020315:104738-104757 Msa1379940:CDS 45.0%
GGATAAATCTCACCATCTGG+TGG - tig0020315:104753-104772 None:intergenic 45.0%
AGGAGAATTACATTGCCGAG+AGG - tig0020315:104893-104912 None:intergenic 45.0%
TGTCCGTATCCGTGCTTAAT+AGG - tig0020315:105219-105238 None:intergenic 45.0%
ATTAAGCACGGATACGGACA+CGG + tig0020315:105219-105238 Msa1379940:intron 45.0%
!! ATGAAGCACTGAGAGAGACA+CGG - tig0020315:105705-105724 None:intergenic 45.0%
TTCTGTGGCCCAATTGTTTG+TGG + tig0020315:105883-105902 Msa1379940:intron 45.0%
CAATGCAGCTGAATGCTTCT+CGG + tig0020315:105917-105936 Msa1379940:CDS 45.0%
ATGTAGAGGGAAAGAGGGAA+GGG - tig0020315:106444-106463 None:intergenic 45.0%
GCCTTCTATGCACAAGTATG+TGG + tig0020315:106495-106514 Msa1379940:intron 45.0%
CGACATCTCAACAAGACAGA+AGG - tig0020315:106581-106600 None:intergenic 45.0%
TGGTCAACAATGATCTCTGG+TGG - tig0020315:106680-106699 None:intergenic 45.0%
CAGGTGGAAGATAGACATTG+TGG - tig0020315:106700-106719 None:intergenic 45.0%
! TCGTGAGTGTTGTGATGCTT+GGG - tig0020315:106725-106744 None:intergenic 45.0%
! TTCGTGAGTGTTGTGATGCT+TGG - tig0020315:106726-106745 None:intergenic 45.0%
CGTAAGAAAGCCTTCTCTGA+TGG + tig0020315:107049-107068 Msa1379940:intron 45.0%
GTTTAGATGGCCATCAGAGA+AGG - tig0020315:107062-107081 None:intergenic 45.0%
! TGTGGAAAATTCAGCTCTGG+TGG + tig0020315:107144-107163 Msa1379940:intron 45.0%
! GTGGAAAATTCAGCTCTGGT+GGG + tig0020315:107145-107164 Msa1379940:intron 45.0%
! TGGAAAATTCAGCTCTGGTG+GGG + tig0020315:107146-107165 Msa1379940:intron 45.0%
AAATACTCTTGATGCACGGC+TGG + tig0020315:107206-107225 Msa1379940:CDS 45.0%
AAGGTGCAAACAGAGAGAAG+GGG - tig0020315:107741-107760 None:intergenic 45.0%
! CAAAGGTGCAAACAGAGAGA+AGG - tig0020315:107743-107762 None:intergenic 45.0%
CGGATTGATGAGAATATGGG+AGG - tig0020315:107808-107827 None:intergenic 45.0%
! GTTTTCCTCCCAGATATCCA+AGG - tig0020315:107868-107887 None:intergenic 45.0%
ACCACATATGTGTGGCTCAA+AGG + tig0020315:107993-108012 Msa1379940:intron 45.0%
TCCTTTGAGCCACACATATG+TGG - tig0020315:107997-108016 None:intergenic 45.0%
GTGTGGCTCAAAGGATGATT+TGG + tig0020315:108002-108021 Msa1379940:intron 45.0%
GTCCTATGTAGGAGAATACG+AGG + tig0020315:108205-108224 Msa1379940:intron 45.0%
ACCCTCGTATTCTCCTACAT+AGG - tig0020315:108210-108229 None:intergenic 45.0%
GTGTGGCTCCAATGAAGATT+TGG + tig0020315:108317-108336 Msa1379940:intron 45.0%
! CTTGTCCAAAGAGCTGCTTT+CGG - tig0020315:108476-108495 None:intergenic 45.0%
! TCGATTACATTTGTTGCCCC+TGG + tig0020315:108512-108531 Msa1379940:three_prime_UTR 45.0%
AGTCGGAGAAAACACCATCA+AGG - tig0020315:108670-108689 None:intergenic 45.0%
GGCGGATAAATCTCACCATC+TGG - tig0020315:104756-104775 None:intergenic 50.0%
GATCTCTCTCTCTGCTGAAG+AGG + tig0020315:104801-104820 Msa1379940:CDS 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + tig0020315:105316-105335 Msa1379940:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - tig0020315:105383-105402 None:intergenic 50.0%
! ATCTGGTGTCAACGTGTGTC+TGG + tig0020315:105676-105695 Msa1379940:intron 50.0%
CATGTAGAGGGAAAGAGGGA+AGG - tig0020315:106445-106464 None:intergenic 50.0%
TCGGAAACATGACGTGCACT+TGG + tig0020315:106598-106617 Msa1379940:CDS 50.0%
GCACTTGGTAGAACATGTGC+TGG + tig0020315:106613-106632 Msa1379940:CDS 50.0%
ACAACACTCACGAACCCTAC+TGG + tig0020315:106732-106751 Msa1379940:CDS 50.0%
! AAAATTCAGCTCTGGTGGGG+TGG + tig0020315:107149-107168 Msa1379940:intron 50.0%
GTTCCGTAAAAAGCTTCCGG+AGG + tig0020315:107236-107255 Msa1379940:CDS 50.0%
TAAGGGTAAGATAGCTGGGG+AGG + tig0020315:107508-107527 Msa1379940:intron 50.0%
AAGGGTAAGATAGCTGGGGA+GGG + tig0020315:107509-107528 Msa1379940:intron 50.0%
GAGAAGGGGAAAAATCTCCC+TGG - tig0020315:107727-107746 None:intergenic 50.0%
GATGGGAAGTGGGGTGATAA+CGG - tig0020315:107828-107847 None:intergenic 50.0%
GTTCACCTTGGATATCTGGG+AGG + tig0020315:107860-107879 Msa1379940:intron 50.0%
! AAGAGCTGCTTTCGGATCTG+TGG - tig0020315:108468-108487 None:intergenic 50.0%
CAGATCCGAAAGCAGCTCTT+TGG + tig0020315:108468-108487 Msa1379940:intron 50.0%
GGCGGATAAATCTCACCATC+TGG - tig0020315:104756-104775 None:intergenic 50.0%
GATCTCTCTCTCTGCTGAAG+AGG + tig0020315:104801-104820 Msa1379940:CDS 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + tig0020315:105316-105335 Msa1379940:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - tig0020315:105383-105402 None:intergenic 50.0%
! ATCTGGTGTCAACGTGTGTC+TGG + tig0020315:105676-105695 Msa1379940:intron 50.0%
CATGTAGAGGGAAAGAGGGA+AGG - tig0020315:106445-106464 None:intergenic 50.0%
TCGGAAACATGACGTGCACT+TGG + tig0020315:106598-106617 Msa1379940:CDS 50.0%
GCACTTGGTAGAACATGTGC+TGG + tig0020315:106613-106632 Msa1379940:CDS 50.0%
ACAACACTCACGAACCCTAC+TGG + tig0020315:106732-106751 Msa1379940:CDS 50.0%
! AAAATTCAGCTCTGGTGGGG+TGG + tig0020315:107149-107168 Msa1379940:intron 50.0%
GTTCCGTAAAAAGCTTCCGG+AGG + tig0020315:107236-107255 Msa1379940:CDS 50.0%
TAAGGGTAAGATAGCTGGGG+AGG + tig0020315:107508-107527 Msa1379940:intron 50.0%
AAGGGTAAGATAGCTGGGGA+GGG + tig0020315:107509-107528 Msa1379940:intron 50.0%
GAGAAGGGGAAAAATCTCCC+TGG - tig0020315:107727-107746 None:intergenic 50.0%
GATGGGAAGTGGGGTGATAA+CGG - tig0020315:107828-107847 None:intergenic 50.0%
GTTCACCTTGGATATCTGGG+AGG + tig0020315:107860-107879 Msa1379940:intron 50.0%
! AAGAGCTGCTTTCGGATCTG+TGG - tig0020315:108468-108487 None:intergenic 50.0%
CAGATCCGAAAGCAGCTCTT+TGG + tig0020315:108468-108487 Msa1379940:intron 50.0%
AGCAGAGAGAGAGATCTCGC+TGG - tig0020315:104797-104816 None:intergenic 55.0%
!! GTGGTGTTGGCTTCTCGTGA+TGG + tig0020315:107168-107187 Msa1379940:CDS 55.0%
ATAGCTGGGGAGGGACTTCA+GGG + tig0020315:107518-107537 Msa1379940:intron 55.0%
! TCGTGTATGATGGGGGCATG+TGG + tig0020315:108617-108636 Msa1379940:three_prime_UTR 55.0%
AGCAGAGAGAGAGATCTCGC+TGG - tig0020315:104797-104816 None:intergenic 55.0%
!! GTGGTGTTGGCTTCTCGTGA+TGG + tig0020315:107168-107187 Msa1379940:CDS 55.0%
ATAGCTGGGGAGGGACTTCA+GGG + tig0020315:107518-107537 Msa1379940:intron 55.0%
! TCGTGTATGATGGGGGCATG+TGG + tig0020315:108617-108636 Msa1379940:three_prime_UTR 55.0%
ACGGATACGGACACGGACAC+CGG + tig0020315:105226-105245 Msa1379940:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG - tig0020315:105248-105267 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG + tig0020315:105322-105341 Msa1379940:intron 60.0%
ACACGACACGTGTCCGACAC+CGG + tig0020315:105345-105364 Msa1379940:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - tig0020315:105361-105380 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - tig0020315:105367-105386 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG - tig0020315:105377-105396 None:intergenic 60.0%
GAGGGAAAGAGGGAAGGGCA+GGG - tig0020315:106439-106458 None:intergenic 60.0%
AGAGGGAAAGAGGGAAGGGC+AGG - tig0020315:106440-106459 None:intergenic 60.0%
TGTGCTGGATGCAGCTGCAC+AGG + tig0020315:106628-106647 Msa1379940:CDS 60.0%
TTGTGATGCTTGGGCGCAGG+TGG - tig0020315:106716-106735 None:intergenic 60.0%
GTGTTGTGATGCTTGGGCGC+AGG - tig0020315:106719-106738 None:intergenic 60.0%
GATAGCTGGGGAGGGACTTC+AGG + tig0020315:107517-107536 Msa1379940:intron 60.0%
ACGGATACGGACACGGACAC+CGG + tig0020315:105226-105245 Msa1379940:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG - tig0020315:105248-105267 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG + tig0020315:105322-105341 Msa1379940:intron 60.0%
ACACGACACGTGTCCGACAC+CGG + tig0020315:105345-105364 Msa1379940:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - tig0020315:105361-105380 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - tig0020315:105367-105386 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG - tig0020315:105377-105396 None:intergenic 60.0%
GAGGGAAAGAGGGAAGGGCA+GGG - tig0020315:106439-106458 None:intergenic 60.0%
AGAGGGAAAGAGGGAAGGGC+AGG - tig0020315:106440-106459 None:intergenic 60.0%
TGTGCTGGATGCAGCTGCAC+AGG + tig0020315:106628-106647 Msa1379940:CDS 60.0%
TTGTGATGCTTGGGCGCAGG+TGG - tig0020315:106716-106735 None:intergenic 60.0%
GTGTTGTGATGCTTGGGCGC+AGG - tig0020315:106719-106738 None:intergenic 60.0%
GATAGCTGGGGAGGGACTTC+AGG + tig0020315:107517-107536 Msa1379940:intron 60.0%
CACGGACACCGGACACGACA+CGG + tig0020315:105237-105256 Msa1379940:intron 65.0%
CACGACACGTGTCCGACACC+GGG + tig0020315:105346-105365 Msa1379940:intron 65.0%
ACCGGGACACGCCTAATCCG+AGG + tig0020315:105363-105382 Msa1379940:intron 65.0%
! CAGCTCTGGTGGGGTGGTGT+TGG + tig0020315:107155-107174 Msa1379940:intron 65.0%
GGGGAGGGACTTCAGGGCTA+AGG + tig0020315:107524-107543 Msa1379940:intron 65.0%
CACGGACACCGGACACGACA+CGG + tig0020315:105237-105256 Msa1379940:intron 65.0%
CACGACACGTGTCCGACACC+GGG + tig0020315:105346-105365 Msa1379940:intron 65.0%
ACCGGGACACGCCTAATCCG+AGG + tig0020315:105363-105382 Msa1379940:intron 65.0%
! CAGCTCTGGTGGGGTGGTGT+TGG + tig0020315:107155-107174 Msa1379940:intron 65.0%
GGGGAGGGACTTCAGGGCTA+AGG + tig0020315:107524-107543 Msa1379940:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020315 gene 104658 108746 104658 ID=Msa1379940;Name=Msa1379940
tig0020315 mRNA 104658 108746 104658 ID=Msa1379940-mRNA-1;Parent=Msa1379940;Name=Msa1379940-mRNA-1;_AED=0.16;_eAED=0.16;_QI=63|1|1|1|1|1|6|240|240
tig0020315 exon 104658 104822 104658 ID=Msa1379940-mRNA-1:exon:6833;Parent=Msa1379940-mRNA-1
tig0020315 exon 104940 105040 104940 ID=Msa1379940-mRNA-1:exon:6834;Parent=Msa1379940-mRNA-1
tig0020315 exon 105909 106095 105909 ID=Msa1379940-mRNA-1:exon:6835;Parent=Msa1379940-mRNA-1
tig0020315 exon 106557 106753 106557 ID=Msa1379940-mRNA-1:exon:6836;Parent=Msa1379940-mRNA-1
tig0020315 exon 107158 107257 107158 ID=Msa1379940-mRNA-1:exon:6837;Parent=Msa1379940-mRNA-1
tig0020315 exon 108471 108746 108471 ID=Msa1379940-mRNA-1:exon:6838;Parent=Msa1379940-mRNA-1
tig0020315 five_prime_UTR 104658 104720 104658 ID=Msa1379940-mRNA-1:five_prime_utr;Parent=Msa1379940-mRNA-1
tig0020315 CDS 104721 104822 104721 ID=Msa1379940-mRNA-1:cds;Parent=Msa1379940-mRNA-1
tig0020315 CDS 104940 105040 104940 ID=Msa1379940-mRNA-1:cds;Parent=Msa1379940-mRNA-1
tig0020315 CDS 105909 106095 105909 ID=Msa1379940-mRNA-1:cds;Parent=Msa1379940-mRNA-1
tig0020315 CDS 106557 106753 106557 ID=Msa1379940-mRNA-1:cds;Parent=Msa1379940-mRNA-1
tig0020315 CDS 107158 107257 107158 ID=Msa1379940-mRNA-1:cds;Parent=Msa1379940-mRNA-1
tig0020315 CDS 108471 108506 108471 ID=Msa1379940-mRNA-1:cds;Parent=Msa1379940-mRNA-1
tig0020315 three_prime_UTR 108507 108746 108507 ID=Msa1379940-mRNA-1:three_prime_utr;Parent=Msa1379940-mRNA-1
Gene Sequence

>Msa1379940

ATGAACGACGGTGATGTCTCTAAGCAAATCCACCAGATGGTGAGATTTATCCGCCAAGAAGCTGAAGAAAAAGCCAGCGAGATCTCTCTCTCTGCTGAAGAGGAATTCAATATCGAGAAGCTTCAGTTGGTTGAAGCTGAGAAGAAGAAGATCAGACAAGAATATGAGCGGAAAGAGCGCCAAGTTGAAATTCGAAAGAAAATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAAGATGACATTGTTAATTCAATGAAAGAAGTTGCAGCCAAGGAACTTTTGAATGTGAGCCGTCATCACCGTGTTGAAGATATTTTACATGTGGGAAATCATGAGTACAGAAACCTTCTAAAAGATCTCATTGTTCAGAGTTTGCTAAGACTGAGAGAACCTTCTGTCTTGTTGAGATGTCGGAAACATGACGTGCACTTGGTAGAACATGTGCTGGATGCAGCTGCACAGGAGTATTCTGAAAAAGCAGGTGTTCATCCACCAGAGATCATTGTTGACCACAATGTCTATCTTCCACCTGCGCCCAAGCATCACAACACTCACGAACCCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGGCTGGATGTAGTGTTCCGTAAAAAGCTTCCGGAGATCCGAAAGCAGCTCTTTGGACAAGCTGCTGTTTGA

Protein sequence

>Msa1379940

MNDGDVSKQIHQMVRFIRQEAEEKASEISLSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDIVNSMKEVAAKELLNVSRHHRVEDILHVGNHEYRNLLKDLIVQSLLRLREPSVLLRCRKHDVHLVEHVLDAAAQEYSEKAGVHPPEIIVDHNVYLPPAPKHHNTHEPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQAAV*