AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460410 MtrunA17_Chr1g0191051 95.666 323 14 0 1 323 1 323 0.0 600
Msa1460410 MtrunA17_Chr1g0191061 77.437 359 35 2 11 323 25 383 0.0 512
Msa1460410 MtrunA17_Chr1g0191041 75.079 317 79 0 7 323 8 324 1.67e-158 446
Msa1460410 MtrunA17_Chr5g0394491 72.897 321 87 0 3 323 4 324 8.50e-157 441
Msa1460410 MtrunA17_Chr1g0205381 72.897 321 87 0 3 323 4 324 9.13e-156 439
Msa1460410 MtrunA17_Chr4g0045721 63.323 319 117 0 2 320 42 360 4.29e-153 433
Msa1460410 MtrunA17_Chr4g0045771 62.102 314 110 2 7 320 47 351 1.14e-142 407
Msa1460410 MtrunA17_Chr1g0191071 80.669 269 47 1 55 323 1 264 2.69e-142 402
Msa1460410 MtrunA17_Chr4g0045781 66.561 314 105 0 7 320 66 379 6.25e-142 406
Msa1460410 MtrunA17_Chr7g0248021 63.057 314 116 0 7 320 61 374 2.94e-141 404
Msa1460410 MtrunA17_Chr7g0254401 60.510 314 114 1 7 320 65 368 2.66e-126 365
Msa1460410 MtrunA17_Chr5g0446431 30.878 353 185 5 11 306 48 398 1.25e-45 160
Msa1460410 MtrunA17_Chr2g0310201 40.650 123 46 4 86 181 12 134 4.44e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460410 AT4G14880.5 70.978 317 92 0 7 323 5 321 1.46e-155 438
Msa1460410 AT4G14880.3 70.978 317 92 0 7 323 5 321 1.46e-155 438
Msa1460410 AT4G14880.4 70.978 317 92 0 7 323 5 321 1.46e-155 438
Msa1460410 AT4G14880.2 70.978 317 92 0 7 323 5 321 1.46e-155 438
Msa1460410 AT4G14880.1 70.978 317 92 0 7 323 5 321 1.46e-155 438
Msa1460410 AT3G04940.1 69.592 319 97 0 2 320 3 321 2.94e-154 435
Msa1460410 AT3G04940.2 69.592 319 97 0 2 320 3 321 2.94e-154 435
Msa1460410 AT2G43750.1 71.019 314 91 0 7 320 75 388 4.08e-153 435
Msa1460410 AT2G43750.2 71.019 314 91 0 7 320 75 388 4.08e-153 435
Msa1460410 AT3G59760.3 70.064 314 94 0 7 320 113 426 1.89e-152 434
Msa1460410 AT3G59760.1 70.064 314 94 0 7 320 113 426 3.20e-152 434
Msa1460410 AT5G28020.2 66.873 323 107 0 1 323 1 323 5.57e-145 412
Msa1460410 AT5G28020.4 66.873 323 107 0 1 323 1 323 5.57e-145 412
Msa1460410 AT5G28020.1 66.873 323 107 0 1 323 1 323 5.57e-145 412
Msa1460410 AT5G28020.3 66.873 323 107 0 1 323 1 323 5.57e-145 412
Msa1460410 AT5G28020.6 66.873 323 107 0 1 323 1 323 5.57e-145 412
Msa1460410 AT5G28030.1 68.111 323 103 0 1 323 1 323 4.03e-144 409
Msa1460410 AT5G28030.4 68.111 323 103 0 1 323 1 323 4.03e-144 409
Msa1460410 AT5G28030.5 68.111 323 103 0 1 323 1 323 4.03e-144 409
Msa1460410 AT5G28030.2 68.111 323 103 0 1 323 1 323 4.03e-144 409
Msa1460410 AT3G61440.1 61.661 313 120 0 8 320 50 362 1.64e-136 392
Msa1460410 AT3G59760.2 69.550 289 88 0 7 295 113 401 8.32e-135 390
Msa1460410 AT3G03630.1 59.633 327 116 2 2 322 88 404 9.28e-124 361
Msa1460410 AT3G22460.1 66.914 269 69 1 55 323 1 249 3.86e-123 353
Msa1460410 AT3G61440.2 62.782 266 99 0 55 320 1 266 9.17e-115 333
Msa1460410 AT5G28030.3 67.600 250 81 0 1 250 1 250 1.06e-110 322
Msa1460410 AT3G61440.4 59.316 263 107 0 8 270 50 312 7.50e-110 323
Msa1460410 AT3G61440.3 61.667 240 92 0 81 320 2 241 1.20e-100 296
Msa1460410 AT5G28020.5 65.823 237 81 0 87 323 1 237 3.43e-96 285
Msa1460410 AT3G22460.2 71.271 181 52 0 7 187 8 188 1.27e-92 274
Msa1460410 AT1G55880.1 28.453 362 199 6 3 306 36 395 2.14e-41 149
Msa1460410 AT1G55880.2 31.373 255 133 4 3 216 36 289 5.11e-36 133

Find 130 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGCAGCTGCAATAAAATT+AGG 0.184994 tig0040892:-1592 Msa1460410:CDS
CAATTCATTGTGAAGTTAAT+AGG 0.233028 tig0040892:-4684 Msa1460410:intron
GAGAGACAACATTGTGATTA+TGG 0.249845 tig0040892:-961 Msa1460410:three_prime_UTR
TCTACTAGATGAAGTTATTC+AGG 0.259370 tig0040892:-2555 Msa1460410:intron
TTGACATTGACTTGAGATTC+TGG 0.270315 tig0040892:-5311 Msa1460410:five_prime_UTR
CAAGTATCGCTCTCCAAAAC+TGG 0.276395 tig0040892:+1379 Msa1460410:intergenic
TGCCTTGAAAGAAGGTTTAC+TGG 0.283658 tig0040892:-2199 Msa1460410:intron
ATGACTATATTTAAAGTAAC+TGG 0.299376 tig0040892:+1134 Msa1460410:intergenic
TTGGTTGCAGGGATAGGAAC+TGG 0.301174 tig0040892:-3581 Msa1460410:CDS
ATTTGACTAATTACCTTTCC+AGG 0.303581 tig0040892:+4399 Msa1460410:intergenic
AGAGTTGATGCTTTGGTTGC+AGG 0.314791 tig0040892:-3593 Msa1460410:CDS
GGTAAACTAATGGTAGCTTT+TGG 0.315050 tig0040892:-5159 Msa1460410:five_prime_UTR
AGACCACTGGCCCTGAGATT+TGG 0.324065 tig0040892:-3631 Msa1460410:CDS
ACTTCACTTAATCACAGTTT+AGG 0.343364 tig0040892:+5050 Msa1460410:intergenic
CTTACTATACCAAGCTGAAT+AGG 0.354323 tig0040892:+5025 Msa1460410:intergenic
TGGAGGGAGAGTTGATGCTT+TGG 0.358657 tig0040892:-3600 Msa1460410:CDS
ACTATTCATACCTTGATCTC+TGG 0.360280 tig0040892:+3515 Msa1460410:intergenic
TGGTTAATTAATAGAAGAAC+AGG 0.369371 tig0040892:-5359 Msa1460410:five_prime_UTR
CCAGAGTCTTTCCAAATCTC+AGG 0.373679 tig0040892:+3620 Msa1460410:intergenic
CGGAGATGTGATTGAGGGTA+TGG 0.374950 tig0040892:-894 Msa1460410:three_prime_UTR
ATTTGTTGAATAATAGCGTT+TGG 0.380025 tig0040892:-1203 Msa1460410:three_prime_UTR
CATCTAGTAGATCAACTTCC+AGG 0.383555 tig0040892:+2567 Msa1460410:intergenic
AAAATTATACTGCGAGCTTT+CGG 0.393798 tig0040892:-3873 Msa1460410:CDS
TGATTGAGCATATAACTATT+AGG 0.407097 tig0040892:+3771 Msa1460410:intergenic
GTCTCTCCAGCTGTCAATCT+AGG 0.407905 tig0040892:+977 Msa1460410:intergenic
CATTACCATTTGATCAGGAT+TGG 0.408628 tig0040892:-1001 Msa1460410:three_prime_UTR
TACCAGTAAACCTTCTTTCA+AGG 0.409533 tig0040892:+2197 Msa1460410:intergenic
ATGCCGGTGTTACCACTTGT+TGG 0.412993 tig0040892:+3972 Msa1460410:intergenic
CAGGTACGTCACTCCCTCTA+TGG 0.413085 tig0040892:+926 Msa1460410:intergenic
TTGCAGATGGGAATTTCATC+AGG 0.416958 tig0040892:-1622 Msa1460410:intron
ATGGCGACTAGGCTTTCCTT+AGG 0.419902 tig0040892:-812 Msa1460410:three_prime_UTR
CACATCTCCGGAGTGTTTGC+AGG 0.419919 tig0040892:+907 Msa1460410:intergenic
CACAAAACATGGTAAACTAA+TGG 0.422031 tig0040892:-5169 Msa1460410:five_prime_UTR
GGAACCATTACCATTTGATC+AGG 0.422790 tig0040892:-1006 Msa1460410:three_prime_UTR
CAGCAGCTGCAATAAAATTA+GGG 0.431631 tig0040892:-1591 Msa1460410:CDS
CAGCACCGATCCCTTGGATT+AGG 0.432171 tig0040892:+2606 Msa1460410:intergenic
TTGATCCTTACTCGTGTGAA+TGG 0.434994 tig0040892:+1030 Msa1460410:intergenic
CTATTCATACCTTGATCTCT+GGG 0.435238 tig0040892:+3516 Msa1460410:intergenic
TTTCTCCATTCACACGAGTA+AGG 0.439368 tig0040892:-1035 Msa1460410:three_prime_UTR
AGACAGAATTTGTTAACAAA+AGG 0.440503 tig0040892:-1075 Msa1460410:three_prime_UTR
CCTGCTGCAGTGTTAAAGAT+AGG 0.441852 tig0040892:-4581 Msa1460410:intron
CTTTCAAGACTCACATAAGC+TGG 0.442324 tig0040892:+3897 Msa1460410:intergenic
CGACACCAGCACCGATCCCT+TGG 0.442965 tig0040892:+2600 Msa1460410:intergenic
TTGTTCAGCTTCATGCCTGA+TGG 0.443006 tig0040892:+1337 Msa1460410:intergenic
GACCCTGCCAAAGGAATTGA+TGG 0.448526 tig0040892:-3831 Msa1460410:CDS
GAGTTGATGCTTTGGTTGCA+GGG 0.455243 tig0040892:-3592 Msa1460410:CDS
ACACCATCAATTCCTTTGGC+AGG 0.457831 tig0040892:+3828 Msa1460410:intergenic
TAGGTCCAATCCTGATCAAA+TGG 0.460109 tig0040892:+996 Msa1460410:intergenic
GTAGATCAACTTCCAGGATA+GGG 0.464520 tig0040892:+2573 Msa1460410:intergenic
TGTAAATAACACCTTTGGAT+TGG 0.472231 tig0040892:+3734 Msa1460410:intergenic
CCTATCTTTAACACTGCAGC+AGG 0.474156 tig0040892:+4581 Msa1460410:intergenic
AAGCTGCTTGCCTTGAAAGA+AGG 0.474497 tig0040892:-2207 Msa1460410:CDS
TGGTTGCAGGGATAGGAACT+GGG 0.484341 tig0040892:-3580 Msa1460410:CDS
CAAAAGGTAAGATATTCAAT+TGG 0.485689 tig0040892:-5379 Msa1460410:five_prime_UTR
GGAGATGTGATTGAGGGTAT+GGG 0.488789 tig0040892:-893 Msa1460410:three_prime_UTR
GGGGAACAGTAACAGGTGTT+GGG 0.494810 tig0040892:-3559 Msa1460410:CDS
CAATCCTGATCAAATGGTAA+TGG 0.496170 tig0040892:+1002 Msa1460410:intergenic
CCTTCTTGATTGCAAAGTGT+TGG 0.496354 tig0040892:+4861 Msa1460410:intergenic
GATGCTTTGGTTGCAGGGAT+AGG 0.501960 tig0040892:-3587 Msa1460410:CDS
AGTAGATCAACTTCCAGGAT+AGG 0.502056 tig0040892:+2572 Msa1460410:intergenic
CACAATTGTGACAGTAGAGC+TGG 0.505735 tig0040892:+1262 Msa1460410:intergenic
ATTACAGAAGGGTGTGTAGC+TGG 0.513651 tig0040892:-4633 Msa1460410:CDS
TGGCGACTAGGCTTTCCTTA+GGG 0.513807 tig0040892:-811 Msa1460410:three_prime_UTR
TCTGAAAGTGCAGTTCTGAA+TGG 0.514085 tig0040892:-3410 Msa1460410:CDS
ATTGAAGATGCCGAGAGTAA+AGG 0.514802 tig0040892:-4432 Msa1460410:CDS
CTAATCCAAGGGATCGGTGC+TGG 0.516701 tig0040892:-2605 Msa1460410:CDS
TTACCTTTCCAGGTGTAATG+AGG 0.523442 tig0040892:+4409 Msa1460410:intergenic
CGAATTGGTGGATTTCCCTA+AGG 0.529704 tig0040892:+796 Msa1460410:intergenic
TTCAGAACTGCACTTTCAGA+TGG 0.538348 tig0040892:+3413 Msa1460410:intergenic
CCTGAGATTTGGAAAGACTC+TGG 0.544001 tig0040892:-3620 Msa1460410:CDS
ACAAGTGGTAACACCGGCAT+AGG 0.544602 tig0040892:-3969 Msa1460410:CDS
GTGAAGTCTCCTATTCAGCT+TGG 0.545114 tig0040892:-5034 Msa1460410:five_prime_UTR
GTTCTGAATGGAGGAAAGCC+AGG 0.546295 tig0040892:-3398 Msa1460410:intron
GCATTTATACGATGGCGACT+AGG 0.547954 tig0040892:-823 Msa1460410:three_prime_UTR
TAGATTCATTACGAGACCAC+TGG 0.548191 tig0040892:-3644 Msa1460410:CDS
TGTAATGAGGCCTTTACTCT+CGG 0.551658 tig0040892:+4422 Msa1460410:intergenic
CACCATCAATTCCTTTGGCA+GGG 0.555618 tig0040892:+3829 Msa1460410:intergenic
CACTCCGGAGATGTGATTGA+GGG 0.556021 tig0040892:-899 Msa1460410:three_prime_UTR
GGCGTCGATAGCAGCAATGA+GGG 0.558283 tig0040892:-3943 Msa1460410:CDS
TGGTAACACCGGCATAGGAT+TGG 0.559661 tig0040892:-3964 Msa1460410:CDS
ATTGGACCTAGATTGACAGC+TGG 0.560629 tig0040892:-983 Msa1460410:three_prime_UTR
AGGCCTCATTACACCTGGAA+AGG 0.563587 tig0040892:-4412 Msa1460410:intron
CAAATGACATTTGACTGAAG+TGG 0.564571 tig0040892:-1317 Msa1460410:exon
ATTTAAAGTTTATGTCTGCA+TGG 0.568287 tig0040892:+1160 Msa1460410:intergenic
GGATTGTGGCAGCTCCATAG+AGG 0.569117 tig0040892:-940 Msa1460410:three_prime_UTR
GGGAAGAGACCAGAAAATGC+AGG 0.570015 tig0040892:-1571 Msa1460410:CDS
TATTTAAACAACATTACAGA+AGG 0.572300 tig0040892:-4645 Msa1460410:CDS
ACACTCCGGAGATGTGATTG+AGG 0.573023 tig0040892:-900 Msa1460410:three_prime_UTR
CATACCCTCAATCACATCTC+CGG 0.573818 tig0040892:+895 Msa1460410:intergenic
CAGCTCTACTGTCACAATTG+TGG 0.575521 tig0040892:-1261 Msa1460410:three_prime_UTR
AAAGGCAAACACCTAATCCA+AGG 0.576831 tig0040892:-2617 Msa1460410:intron
TAGATCAACTTCCAGGATAG+GGG 0.577360 tig0040892:+2574 Msa1460410:intergenic
AACATTGTGATTATGGATTG+TGG 0.587206 tig0040892:-954 Msa1460410:three_prime_UTR
AGTAAAGGCCTCATTACACC+TGG 0.589255 tig0040892:-4417 Msa1460410:CDS
GTTCTTGTTGAGCCAACAAG+TGG 0.593333 tig0040892:-3984 Msa1460410:CDS
TTTCCAAATCTCAGGGCCAG+TGG 0.596982 tig0040892:+3628 Msa1460410:intergenic
GAGATGTGATTGAGGGTATG+GGG 0.597375 tig0040892:-892 Msa1460410:three_prime_UTR
TATCGACGCCAATCCTATGC+CGG 0.597404 tig0040892:+3956 Msa1460410:intergenic
GCTTTCTTCATCAGATAACA+TGG 0.598151 tig0040892:-4885 Msa1460410:exon
AGATTTGGAAAGACTCTGGA+GGG 0.598831 tig0040892:-3616 Msa1460410:CDS
TTCACACGAGTAAGGATCAA+AGG 0.601177 tig0040892:-1027 Msa1460410:three_prime_UTR
CAGAGTCTTTCCAAATCTCA+GGG 0.601201 tig0040892:+3621 Msa1460410:intergenic
GTTAATAGGAAACACACCAT+TGG 0.604534 tig0040892:-4670 Msa1460410:CDS
AAGTATCGCTCTCCAAAACT+GGG 0.605328 tig0040892:+1380 Msa1460410:intergenic
CCAACACTTTGCAATCAAGA+AGG 0.607054 tig0040892:-4861 Msa1460410:CDS
TGAAAACTCTGCCAATCCAA+AGG 0.611620 tig0040892:-3745 Msa1460410:intron
GAGATTTGGAAAGACTCTGG+AGG 0.616942 tig0040892:-3617 Msa1460410:CDS
ACTGCGAGCTTTCGGAGCCG+AGG 0.618497 tig0040892:-3865 Msa1460410:CDS
TGGCGTCGATAGCAGCAATG+AGG 0.618801 tig0040892:-3944 Msa1460410:CDS
AAACACCTAATCCAAGGGAT+CGG 0.628864 tig0040892:-2611 Msa1460410:CDS
GATTGTGGCAGCTCCATAGA+GGG 0.630144 tig0040892:-939 Msa1460410:three_prime_UTR
TGACGTACCTGCAAACACTC+CGG 0.632120 tig0040892:-914 Msa1460410:three_prime_UTR
ATTGAACTTGATGAATCGAG+AGG 0.635155 tig0040892:+5280 Msa1460410:intergenic
ATGTGTTAGCATTTATACGA+TGG 0.637615 tig0040892:-831 Msa1460410:three_prime_UTR
AGATCAACTTCCAGGATAGG+GGG 0.642892 tig0040892:+2575 Msa1460410:intergenic
AAGGCAAACACCTAATCCAA+GGG 0.643306 tig0040892:-2616 Msa1460410:CDS
AGGGTCTGTCAAATATACCT+CGG 0.651115 tig0040892:+3848 Msa1460410:intergenic
TAAATGCTAACACATGACTC+AGG 0.652861 tig0040892:+839 Msa1460410:intergenic
TAACATTTATCCACAAAACA+TGG 0.654297 tig0040892:-5180 Msa1460410:five_prime_UTR
ATGTTGTTTAAATATACCAA+TGG 0.656492 tig0040892:+4654 Msa1460410:intergenic
ATTTAAACAACATTACAGAA+GGG 0.658178 tig0040892:-4644 Msa1460410:CDS
TATTTGACAGACCCTGCCAA+AGG 0.662474 tig0040892:-3840 Msa1460410:CDS
AGGTGTTGGGAAGTTCCTCA+AGG 0.665059 tig0040892:-3546 Msa1460410:CDS
GAAAGTGCAGTTCTGAATGG+AGG 0.666727 tig0040892:-3407 Msa1460410:CDS
GGTTGCAGGGATAGGAACTG+GGG 0.673121 tig0040892:-3579 Msa1460410:CDS
GAGCCAACAAGTGGTAACAC+CGG 0.677684 tig0040892:-3975 Msa1460410:CDS
TCTTAAAATATATACACACA+CGG 0.699160 tig0040892:-5113 Msa1460410:five_prime_UTR
GCGTCGATAGCAGCAATGAG+GGG 0.705710 tig0040892:-3942 Msa1460410:CDS
GGTTAATTAATAGAAGAACA+GGG 0.707502 tig0040892:-5358 Msa1460410:five_prime_UTR
GTTGCAGGGATAGGAACTGG+GGG 0.729118 tig0040892:-3578 Msa1460410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAGTAATTTTCTTAAT+AGG - tig0040892:958-977 Msa1460410:three_prime_UTR 10.0%
!! AACATTATAAGTAATAACAT+TGG + tig0040892:2071-2090 Msa1460410:intergenic 15.0%
!! TATATATTAACAAATTATGC+AGG + tig0040892:3765-3784 Msa1460410:intergenic 15.0%
!! ATAATCAGTATGAAAAATAA+AGG + tig0040892:4528-4547 Msa1460410:intergenic 15.0%
!! TATGTTGAATAAACTTATTA+AGG + tig0040892:4662-4681 Msa1460410:intergenic 15.0%
!!! TTCATCAAGTTCAATTTTAT+CGG - tig0040892:909-928 Msa1460410:three_prime_UTR 20.0%
!!! AGTAATTTTCTTAATAGGAT+TGG - tig0040892:963-982 Msa1460410:three_prime_UTR 20.0%
!!! GTAATTTTCTTAATAGGATT+GGG - tig0040892:964-983 Msa1460410:three_prime_UTR 20.0%
!! TCTTAAAATATATACACACA+CGG - tig0040892:1068-1087 Msa1460410:three_prime_UTR 20.0%
!!! ATGTTGTTTAAATATACCAA+TGG + tig0040892:1530-1549 Msa1460410:intergenic 20.0%
!! TATTTAAACAACATTACAGA+AGG - tig0040892:1536-1555 Msa1460410:intron 20.0%
!! ATTTAAACAACATTACAGAA+GGG - tig0040892:1537-1556 Msa1460410:intron 20.0%
!! AACAATATGAACAATAGTAT+AGG + tig0040892:2122-2141 Msa1460410:intergenic 20.0%
!!! AGTGTAATCTTTTTAAACAA+TGG - tig0040892:2161-2180 Msa1460410:intron 20.0%
!!! ACAGTTCATATTTTCTAATT+TGG - tig0040892:2467-2486 Msa1460410:intron 20.0%
!!! TATTTTCTAATTTGGTTGTT+TGG - tig0040892:2475-2494 Msa1460410:intron 20.0%
!! AAAACAACGACAAAATTAAT+TGG + tig0040892:2518-2537 Msa1460410:intergenic 20.0%
!! TAGAATTGTTCTATCAAAAT+TGG - tig0040892:3244-3263 Msa1460410:intron 20.0%
!! TATTTGATTCTTCTAATTTC+TGG - tig0040892:3844-3863 Msa1460410:CDS 20.0%
!! AGTATGAAAAATAAAGGTTT+GGG + tig0040892:4522-4541 Msa1460410:intergenic 20.0%
!!! ATGACTATATTTAAAGTAAC+TGG + tig0040892:5050-5069 Msa1460410:intergenic 20.0%
! TGGTTAATTAATAGAAGAAC+AGG - tig0040892:822-841 Msa1460410:three_prime_UTR 25.0%
! GGTTAATTAATAGAAGAACA+GGG - tig0040892:823-842 Msa1460410:three_prime_UTR 25.0%
!! TCATCAAGTTCAATTTTATC+GGG - tig0040892:910-929 Msa1460410:three_prime_UTR 25.0%
! TAACATTTATCCACAAAACA+TGG - tig0040892:1001-1020 Msa1460410:three_prime_UTR 25.0%
!!! GTGTATATATTTTAAGAGAC+TGG + tig0040892:1065-1084 Msa1460410:intergenic 25.0%
! CAATTCATTGTGAAGTTAAT+AGG - tig0040892:1497-1516 Msa1460410:intron 25.0%
!! TAATATTCTTTTTCTCACTC+AGG - tig0040892:1711-1730 Msa1460410:intron 25.0%
!! AGATATCTAAGTTTTCAAAC+TGG - tig0040892:1806-1825 Msa1460410:intron 25.0%
!! GATATCTAAGTTTTCAAACT+GGG - tig0040892:1807-1826 Msa1460410:intron 25.0%
!! CAATTTTTGAATGATGAGTT+AGG + tig0040892:1886-1905 Msa1460410:intergenic 25.0%
! CTAACTCATCATTCAAAAAT+TGG - tig0040892:1884-1903 Msa1460410:intron 25.0%
!!! CTTTATGAACTCTTTTAAGT+CGG - tig0040892:1930-1949 Msa1460410:intron 25.0%
! TACTCAAACTTGTAATAGTA+TGG - tig0040892:1992-2011 Msa1460410:intron 25.0%
! AATATGAACAATAGTATAGG+TGG + tig0040892:2119-2138 Msa1460410:intergenic 25.0%
! TGATTGAGCATATAACTATT+AGG + tig0040892:2413-2432 Msa1460410:intergenic 25.0%
!!! TGATTTTGAGTATTTCTTTC+TGG - tig0040892:2814-2833 Msa1460410:intron 25.0%
! TGTGAATGTTATTGTATTCT+TGG - tig0040892:2861-2880 Msa1460410:intron 25.0%
! ACATAGACATACAACAAATT+GGG + tig0040892:3004-3023 Msa1460410:intergenic 25.0%
! TACATAGACATACAACAAAT+TGG + tig0040892:3005-3024 Msa1460410:intergenic 25.0%
!!! AATTTGTTGTATGTCTATGT+AGG - tig0040892:3004-3023 Msa1460410:intron 25.0%
!! TTTTATGTTTGGATTTTGGA+GGG + tig0040892:3163-3182 Msa1460410:intergenic 25.0%
!! AACCTTTTATGTTTGGATTT+TGG + tig0040892:3167-3186 Msa1460410:intergenic 25.0%
!! AGGTATAAACCTTTTATGTT+TGG + tig0040892:3174-3193 Msa1460410:intergenic 25.0%
! TGGAAAAATCAATCAGTTAA+CGG + tig0040892:3530-3549 Msa1460410:intergenic 25.0%
!!! TATCAGTTTTTTCTAGAATC+TGG - tig0040892:3681-3700 Msa1460410:intron 25.0%
!!! ACTCTCTTTTGTTTCTTTTT+CGG - tig0040892:3727-3746 Msa1460410:intron 25.0%
! AATACTAGCTGTTAATACAA+GGG - tig0040892:3885-3904 Msa1460410:CDS 25.0%
! GTTATATAACACAAAACTGA+AGG + tig0040892:4060-4079 Msa1460410:intergenic 25.0%
! GTTATATAACTCAGCAAATA+TGG - tig0040892:4070-4089 Msa1460410:intron 25.0%
! AGCATAACAAAATGACATTA+CGG + tig0040892:4205-4224 Msa1460410:intergenic 25.0%
!!! TTAGGAAATTATTGATGATG+TGG + tig0040892:4461-4480 Msa1460410:intergenic 25.0%
!! AAAAATAAAGGTTTGGGTTA+GGG + tig0040892:4516-4535 Msa1460410:intergenic 25.0%
! CAGTATGAAAAATAAAGGTT+TGG + tig0040892:4523-4542 Msa1460410:intergenic 25.0%
!! ATTTGTTGAATAATAGCGTT+TGG - tig0040892:4978-4997 Msa1460410:intron 25.0%
!! ATTTAAAGTTTATGTCTGCA+TGG + tig0040892:5024-5043 Msa1460410:intergenic 25.0%
!!! AGACAGAATTTGTTAACAAA+AGG - tig0040892:5106-5125 Msa1460410:five_prime_UTR 25.0%
!! CATTAGTTTACCATGTTTTG+TGG + tig0040892:1014-1033 Msa1460410:intergenic 30.0%
CACAAAACATGGTAAACTAA+TGG - tig0040892:1012-1031 Msa1460410:three_prime_UTR 30.0%
GTTGAAAAATCATTACTACG+AGG + tig0040892:1108-1127 Msa1460410:intergenic 30.0%
ACTTCACTTAATCACAGTTT+AGG + tig0040892:1134-1153 Msa1460410:intergenic 30.0%
CTCACATAAAAGACAAAACA+AGG + tig0040892:1202-1221 Msa1460410:intergenic 30.0%
!!! TCTGTTTTGAAAGATTTTGC+AGG - tig0040892:1274-1293 Msa1460410:three_prime_UTR 30.0%
! TTCACAAACTTGAACTGTTT+TGG - tig0040892:1639-1658 Msa1460410:intron 30.0%
ATTTGACTAATTACCTTTCC+AGG + tig0040892:1785-1804 Msa1460410:intergenic 30.0%
CTCATCATTCAAAAATTGGT+TGG - tig0040892:1888-1907 Msa1460410:intron 30.0%
! CATTCAAAAATTGGTTGGTA+AGG - tig0040892:1893-1912 Msa1460410:intron 30.0%
!! AAAATTGGTTGGTAAGGTAA+AGG - tig0040892:1899-1918 Msa1460410:intron 30.0%
CTATTACAAGTTTGAGTATC+AGG + tig0040892:1990-2009 Msa1460410:intergenic 30.0%
! ACTTGTAATAGTATGGACTA+TGG - tig0040892:1999-2018 Msa1460410:intron 30.0%
ATTTCATTACCACCTATGAT+TGG - tig0040892:2039-2058 Msa1460410:intron 30.0%
TTTCATTACCACCTATGATT+GGG - tig0040892:2040-2059 Msa1460410:intron 30.0%
AAAATTATACTGCGAGCTTT+CGG - tig0040892:2308-2327 Msa1460410:intron 30.0%
AAAAACACCATCAATTCCTT+TGG + tig0040892:2360-2379 Msa1460410:intergenic 30.0%
TGTAAATAACACCTTTGGAT+TGG + tig0040892:2450-2469 Msa1460410:intergenic 30.0%
TGAACTGTAAATAACACCTT+TGG + tig0040892:2455-2474 Msa1460410:intergenic 30.0%
TTTCTAATTTGGTTGTTTGG+TGG - tig0040892:2478-2497 Msa1460410:intron 30.0%
TTCTAATTTGGTTGTTTGGT+GGG - tig0040892:2479-2498 Msa1460410:intron 30.0%
CTCAAAATCATAAAATCACC+TGG + tig0040892:2804-2823 Msa1460410:intergenic 30.0%
!! TTTATGTTTGGATTTTGGAG+GGG + tig0040892:3162-3181 Msa1460410:intergenic 30.0%
! CTTTTATGTTTGGATTTTGG+AGG + tig0040892:3164-3183 Msa1460410:intergenic 30.0%
CTCCAAAATCCAAACATAAA+AGG - tig0040892:3162-3181 Msa1460410:intron 30.0%
TCTAATGTTTCTCATGATAG+TGG + tig0040892:3228-3247 Msa1460410:intergenic 30.0%
TTGTTCTATCAAAATTGGCT+TGG - tig0040892:3249-3268 Msa1460410:intron 30.0%
TATTCAAGCATAACCATTTG+AGG - tig0040892:3504-3523 Msa1460410:intron 30.0%
TCCATTTGAACACATTTCAA+AGG - tig0040892:3546-3565 Msa1460410:CDS 30.0%
TCTACTAGATGAAGTTATTC+AGG - tig0040892:3626-3645 Msa1460410:CDS 30.0%
TGCTCTCAATACTAATACAT+TGG - tig0040892:3650-3669 Msa1460410:intron 30.0%
! GAGAGTCTCATTTTATATGA+AGG + tig0040892:3713-3732 Msa1460410:intergenic 30.0%
!! CTCTCTTTTGTTTCTTTTTC+GGG - tig0040892:3728-3747 Msa1460410:intron 30.0%
CTTGTATTAACAGCTAGTAT+TGG + tig0040892:3886-3905 Msa1460410:intergenic 30.0%
CAATACTAGCTGTTAATACA+AGG - tig0040892:3884-3903 Msa1460410:CDS 30.0%
!!! GGATTTTGTTTTAACCAACA+AGG - tig0040892:3906-3925 Msa1460410:CDS 30.0%
!!! TTTTGTTATGCTGCTTTGAT+AGG - tig0040892:4213-4232 Msa1460410:intron 30.0%
CAAAATCGATATGTTACAGA+AGG - tig0040892:4279-4298 Msa1460410:intron 30.0%
! TGATAAATGTCTCTTTTCTG+AGG + tig0040892:4335-4354 Msa1460410:intergenic 30.0%
ATAGAACCCTTATTATGGTT+TGG + tig0040892:4364-4383 Msa1460410:intergenic 30.0%
! GAAAAATAAAGGTTTGGGTT+AGG + tig0040892:4517-4536 Msa1460410:intergenic 30.0%
! ATATGAATGTCTTTTGCAGA+TGG - tig0040892:4546-4565 Msa1460410:intron 30.0%
! TATGAATGTCTTTTGCAGAT+GGG - tig0040892:4547-4566 Msa1460410:intron 30.0%
AATACTCACAAGGAAACATT+AGG + tig0040892:4729-4748 Msa1460410:intergenic 30.0%
! AACATTGTGATTATGGATTG+TGG - tig0040892:5227-5246 Msa1460410:five_prime_UTR 30.0%
ATGTGTTAGCATTTATACGA+TGG - tig0040892:5350-5369 Msa1460410:five_prime_UTR 30.0%
!! TTGACATTGACTTGAGATTC+TGG - tig0040892:870-889 Msa1460410:three_prime_UTR 35.0%
ATTGAACTTGATGAATCGAG+AGG + tig0040892:904-923 Msa1460410:intergenic 35.0%
! ATTTTATCGGGTGCCAATAT+CGG - tig0040892:922-941 Msa1460410:three_prime_UTR 35.0%
! GGTAAACTAATGGTAGCTTT+TGG - tig0040892:1022-1041 Msa1460410:three_prime_UTR 35.0%
! AATGGTAGCTTTTGGATCTT+AGG - tig0040892:1030-1049 Msa1460410:three_prime_UTR 35.0%
! ATGGTAGCTTTTGGATCTTA+GGG - tig0040892:1031-1050 Msa1460410:three_prime_UTR 35.0%
CTTACTATACCAAGCTGAAT+AGG + tig0040892:1159-1178 Msa1460410:intergenic 35.0%
GCTTTCTTCATCAGATAACA+TGG - tig0040892:1296-1315 Msa1460410:three_prime_UTR 35.0%
! TTCACTGTCTTATTCAGCTA+TGG - tig0040892:1407-1426 Msa1460410:intron 35.0%
GTTAATAGGAAACACACCAT+TGG - tig0040892:1511-1530 Msa1460410:intron 35.0%
CATTGGAAAATCCCAATCAT+AGG + tig0040892:2054-2073 Msa1460410:intergenic 35.0%
CTATTCATACCTTGATCTCT+GGG + tig0040892:2668-2687 Msa1460410:intergenic 35.0%
ACTATTCATACCTTGATCTC+TGG + tig0040892:2669-2688 Msa1460410:intergenic 35.0%
ACATACAACAAATTGGGACT+CGG + tig0040892:2998-3017 Msa1460410:intergenic 35.0%
TTGTATGTCTATGTAGGAGA+GGG - tig0040892:3010-3029 Msa1460410:intron 35.0%
! GGTTTATACCTTTTCCTCTA+AGG - tig0040892:3183-3202 Msa1460410:intron 35.0%
TAAACAGTCCTTAGAGGAAA+AGG + tig0040892:3194-3213 Msa1460410:intergenic 35.0%
! TTTCCTCTAAGGACTGTTTA+AGG - tig0040892:3194-3213 Msa1460410:intron 35.0%
ATACCTTAAACAGTCCTTAG+AGG + tig0040892:3200-3219 Msa1460410:intergenic 35.0%
TTGGAGAAAACTTGAAATGC+AGG - tig0040892:3268-3287 Msa1460410:intron 35.0%
!!! TTGCTGACTTGTCTGTTTTT+TGG - tig0040892:3344-3363 Msa1460410:intron 35.0%
TAAGTCAATGACAACCCAAA+GGG + tig0040892:3390-3409 Msa1460410:intergenic 35.0%
!! GCCTTTGAAATGTGTTCAAA+TGG + tig0040892:3550-3569 Msa1460410:intergenic 35.0%
AAATTATGCAGGTTTCACGT+AGG + tig0040892:3754-3773 Msa1460410:intergenic 35.0%
TGTAATTCACAGAACCTTGT+TGG + tig0040892:3923-3942 Msa1460410:intergenic 35.0%
AACAAGGTTCTGTGAATTAC+AGG - tig0040892:3922-3941 Msa1460410:CDS 35.0%
TACCAGTAAACCTTCTTTCA+AGG + tig0040892:3987-4006 Msa1460410:intergenic 35.0%
TGAAAGAAGGTTTACTGGTA+TGG - tig0040892:3987-4006 Msa1460410:CDS 35.0%
ACATTACGGTGAGATATGAT+TGG + tig0040892:4191-4210 Msa1460410:intergenic 35.0%
ACTCAGTCCAAACCATAATA+AGG - tig0040892:4354-4373 Msa1460410:intron 35.0%
CTCAGTCCAAACCATAATAA+GGG - tig0040892:4355-4374 Msa1460410:intron 35.0%
ACCATAATAAGGGTTCTATC+TGG - tig0040892:4365-4384 Msa1460410:intron 35.0%
TCCAGATAGAACCCTTATTA+TGG + tig0040892:4369-4388 Msa1460410:intergenic 35.0%
GAAGGATGATGCAAAAGATA+AGG + tig0040892:4405-4424 Msa1460410:intergenic 35.0%
ACAGCAGCTGCAATAAAATT+AGG - tig0040892:4589-4608 Msa1460410:CDS 35.0%
CAGCAGCTGCAATAAAATTA+GGG - tig0040892:4590-4609 Msa1460410:CDS 35.0%
GACATCAACTAATACTCACA+AGG + tig0040892:4739-4758 Msa1460410:intergenic 35.0%
CAAATGACATTTGACTGAAG+TGG - tig0040892:4864-4883 Msa1460410:CDS 35.0%
CAATCCTGATCAAATGGTAA+TGG + tig0040892:5182-5201 Msa1460410:intergenic 35.0%
CATTACCATTTGATCAGGAT+TGG - tig0040892:5180-5199 Msa1460410:five_prime_UTR 35.0%
GAGAGACAACATTGTGATTA+TGG - tig0040892:5220-5239 Msa1460410:five_prime_UTR 35.0%
TAAATGCTAACACATGACTC+AGG + tig0040892:5345-5364 Msa1460410:intergenic 35.0%
GTGCCAATATCGGTGAAAAA+CGG - tig0040892:932-951 Msa1460410:three_prime_UTR 40.0%
!! ACTCCGTTTTTCACCGATAT+TGG + tig0040892:938-957 Msa1460410:intergenic 40.0%
! ACTACGAGGAATTTTCAGCT+TGG + tig0040892:1094-1113 Msa1460410:intergenic 40.0%
CCTTCTTGATTGCAAAGTGT+TGG + tig0040892:1323-1342 Msa1460410:intergenic 40.0%
CCAACACTTTGCAATCAAGA+AGG - tig0040892:1320-1339 Msa1460410:exon 40.0%
TGCAGTGTTAAAGATAGGCA+TGG - tig0040892:1605-1624 Msa1460410:CDS 40.0%
ATTGAAGATGCCGAGAGTAA+AGG - tig0040892:1749-1768 Msa1460410:intron 40.0%
TGTAATGAGGCCTTTACTCT+CGG + tig0040892:1762-1781 Msa1460410:intergenic 40.0%
TTACCTTTCCAGGTGTAATG+AGG + tig0040892:1775-1794 Msa1460410:intergenic 40.0%
! GTTTTCAAACTGGGCTTGTA+AGG - tig0040892:1816-1835 Msa1460410:intron 40.0%
AAACTGGGCTTGTAAGGTTA+GGG - tig0040892:1822-1841 Msa1460410:intron 40.0%
TGGAAAATCCCAATCATAGG+TGG + tig0040892:2051-2070 Msa1460410:intergenic 40.0%
CTTTCAAGACTCACATAAGC+TGG + tig0040892:2287-2306 Msa1460410:intergenic 40.0%
AGGGTCTGTCAAATATACCT+CGG + tig0040892:2336-2355 Msa1460410:intergenic 40.0%
TGAAAACTCTGCCAATCCAA+AGG - tig0040892:2436-2455 Msa1460410:intron 40.0%
TAGATTCATTACGAGACCAC+TGG - tig0040892:2537-2556 Msa1460410:intron 40.0%
CAGAGTCTTTCCAAATCTCA+GGG + tig0040892:2563-2582 Msa1460410:intergenic 40.0%
AGATTTGGAAAGACTCTGGA+GGG - tig0040892:2565-2584 Msa1460410:CDS 40.0%
!!! TAATGTTGCTTTTCCCCTCT+AGG - tig0040892:2731-2750 Msa1460410:intron 40.0%
TTCTACACCATACACCTAGA+GGG + tig0040892:2748-2767 Msa1460410:intergenic 40.0%
TTCAGAACTGCACTTTCAGA+TGG + tig0040892:2771-2790 Msa1460410:intergenic 40.0%
!! TCTGAAAGTGCAGTTCTGAA+TGG - tig0040892:2771-2790 Msa1460410:intron 40.0%
AATGTGATGAACGAGAGAGT+TGG - tig0040892:2970-2989 Msa1460410:intron 40.0%
GTTGTATGTCTATGTAGGAG+AGG - tig0040892:3009-3028 Msa1460410:intron 40.0%
TGTATGTCTATGTAGGAGAG+GGG - tig0040892:3011-3030 Msa1460410:intron 40.0%
! TTAGACATCTGCAGGTGTTT+TGG - tig0040892:3299-3318 Msa1460410:intron 40.0%
AGACAAGTCAGCAATCTAAC+AGG + tig0040892:3338-3357 Msa1460410:intergenic 40.0%
CTAAGTCAATGACAACCCAA+AGG + tig0040892:3391-3410 Msa1460410:intergenic 40.0%
AATCAGTTAACGGCCTCAAA+TGG + tig0040892:3520-3539 Msa1460410:intergenic 40.0%
AAAGGCAAACACCTAATCCA+AGG - tig0040892:3564-3583 Msa1460410:CDS 40.0%
AAGGCAAACACCTAATCCAA+GGG - tig0040892:3565-3584 Msa1460410:CDS 40.0%
AAACACCTAATCCAAGGGAT+CGG - tig0040892:3570-3589 Msa1460410:CDS 40.0%
TAGATCAACTTCCAGGATAG+GGG + tig0040892:3610-3629 Msa1460410:intergenic 40.0%
GTAGATCAACTTCCAGGATA+GGG + tig0040892:3611-3630 Msa1460410:intergenic 40.0%
AGTAGATCAACTTCCAGGAT+AGG + tig0040892:3612-3631 Msa1460410:intergenic 40.0%
CATCTAGTAGATCAACTTCC+AGG + tig0040892:3617-3636 Msa1460410:intergenic 40.0%
TGCCTTGAAAGAAGGTTTAC+TGG - tig0040892:3982-4001 Msa1460410:CDS 40.0%
!! TTTCTGAGGAGCTTTTGCTA+CGG + tig0040892:4321-4340 Msa1460410:intergenic 40.0%
TGAGAGGAACGTGATTATAG+GGG + tig0040892:4428-4447 Msa1460410:intergenic 40.0%
GTGAGAGGAACGTGATTATA+GGG + tig0040892:4429-4448 Msa1460410:intergenic 40.0%
TGTGAGAGGAACGTGATTAT+AGG + tig0040892:4430-4449 Msa1460410:intergenic 40.0%
ATGTGGCAGTTAATTGTGAG+AGG + tig0040892:4444-4463 Msa1460410:intergenic 40.0%
TTGCAGATGGGAATTTCATC+AGG - tig0040892:4559-4578 Msa1460410:intron 40.0%
! ATGAGCTTTCCTGCATTTTC+TGG + tig0040892:4622-4641 Msa1460410:intergenic 40.0%
! CAGGTGATTTTTCCCAGTTT+TGG - tig0040892:4789-4808 Msa1460410:intron 40.0%
! AAGTATCGCTCTCCAAAACT+GGG + tig0040892:4804-4823 Msa1460410:intergenic 40.0%
!! TGCCTGATGGATTCAAAAAG+CGG + tig0040892:4834-4853 Msa1460410:intergenic 40.0%
TTTCTCCATTCACACGAGTA+AGG - tig0040892:5146-5165 Msa1460410:five_prime_UTR 40.0%
TTGATCCTTACTCGTGTGAA+TGG + tig0040892:5154-5173 Msa1460410:intergenic 40.0%
TTCACACGAGTAAGGATCAA+AGG - tig0040892:5154-5173 Msa1460410:five_prime_UTR 40.0%
GGAACCATTACCATTTGATC+AGG - tig0040892:5175-5194 Msa1460410:five_prime_UTR 40.0%
TAGGTCCAATCCTGATCAAA+TGG + tig0040892:5188-5207 Msa1460410:intergenic 40.0%
!! ATTGAGGGTATGGGGTTTTT+AGG - tig0040892:5297-5316 Msa1460410:five_prime_UTR 40.0%
!! TTGAGGGTATGGGGTTTTTA+GGG - tig0040892:5298-5317 Msa1460410:five_prime_UTR 40.0%
GTGAAGTCTCCTATTCAGCT+TGG - tig0040892:1147-1166 Msa1460410:three_prime_UTR 45.0%
! ATTACAGAAGGGTGTGTAGC+TGG - tig0040892:1548-1567 Msa1460410:intron 45.0%
CCTATCTTTAACACTGCAGC+AGG + tig0040892:1603-1622 Msa1460410:intergenic 45.0%
CCTGCTGCAGTGTTAAAGAT+AGG - tig0040892:1600-1619 Msa1460410:CDS 45.0%
AGTAAAGGCCTCATTACACC+TGG - tig0040892:1764-1783 Msa1460410:intron 45.0%
CAAACTGGGCTTGTAAGGTT+AGG - tig0040892:1821-1840 Msa1460410:intron 45.0%
AACTGGGCTTGTAAGGTTAG+GGG - tig0040892:1823-1842 Msa1460410:intron 45.0%
GTTCTTGTTGAGCCAACAAG+TGG - tig0040892:2197-2216 Msa1460410:intron 45.0%
TATTTGACAGACCCTGCCAA+AGG - tig0040892:2341-2360 Msa1460410:intron 45.0%
CACCATCAATTCCTTTGGCA+GGG + tig0040892:2355-2374 Msa1460410:intergenic 45.0%
ACACCATCAATTCCTTTGGC+AGG + tig0040892:2356-2375 Msa1460410:intergenic 45.0%
CCAGAGTCTTTCCAAATCTC+AGG + tig0040892:2564-2583 Msa1460410:intergenic 45.0%
CCTGAGATTTGGAAAGACTC+TGG - tig0040892:2561-2580 Msa1460410:CDS 45.0%
GAGATTTGGAAAGACTCTGG+AGG - tig0040892:2564-2583 Msa1460410:CDS 45.0%
!! AGAGTTGATGCTTTGGTTGC+AGG - tig0040892:2588-2607 Msa1460410:CDS 45.0%
!! GAGTTGATGCTTTGGTTGCA+GGG - tig0040892:2589-2608 Msa1460410:CDS 45.0%
! TCTCTGGGTTTTTCTCCTTG+AGG + tig0040892:2653-2672 Msa1460410:intergenic 45.0%
GGAGAAAAACCCAGAGATCA+AGG - tig0040892:2656-2675 Msa1460410:intron 45.0%
TCTACACCATACACCTAGAG+GGG + tig0040892:2747-2766 Msa1460410:intergenic 45.0%
GTTCTACACCATACACCTAG+AGG + tig0040892:2749-2768 Msa1460410:intergenic 45.0%
!! GAAAGTGCAGTTCTGAATGG+AGG - tig0040892:2774-2793 Msa1460410:intron 45.0%
!! GATTTTGGAGGGGAGAGTTT+TGG + tig0040892:3152-3171 Msa1460410:intergenic 45.0%
CAGCACTATTAGACATCTGC+AGG - tig0040892:3291-3310 Msa1460410:intron 45.0%
AAAAGCTGCACTTAGCCCTT+TGG - tig0040892:3372-3391 Msa1460410:intron 45.0%
AAAGCTGCACTTAGCCCTTT+GGG - tig0040892:3373-3392 Msa1460410:intron 45.0%
AGATCAACTTCCAGGATAGG+GGG + tig0040892:3609-3628 Msa1460410:intergenic 45.0%
AAGCTGCTTGCCTTGAAAGA+AGG - tig0040892:3974-3993 Msa1460410:CDS 45.0%
! TTTTGCTACGGGGTTACAGT+GGG + tig0040892:4309-4328 Msa1460410:intergenic 45.0%
!! TTCTGAGGAGCTTTTGCTAC+GGG + tig0040892:4320-4339 Msa1460410:intergenic 45.0%
GAGAGGAACGTGATTATAGG+GGG + tig0040892:4427-4446 Msa1460410:intergenic 45.0%
CTTCTGAATCGTTGTTGTGC+AGG - tig0040892:4770-4789 Msa1460410:intron 45.0%
! CAAGTATCGCTCTCCAAAAC+TGG + tig0040892:4805-4824 Msa1460410:intergenic 45.0%
!!! CACCGCTTTTTGAATCCATC+AGG - tig0040892:4829-4848 Msa1460410:intron 45.0%
TTGTTCAGCTTCATGCCTGA+TGG + tig0040892:4847-4866 Msa1460410:intergenic 45.0%
CACAATTGTGACAGTAGAGC+TGG + tig0040892:4922-4941 Msa1460410:intergenic 45.0%
CAGCTCTACTGTCACAATTG+TGG - tig0040892:4920-4939 Msa1460410:intron 45.0%
ATTGGACCTAGATTGACAGC+TGG - tig0040892:5198-5217 Msa1460410:five_prime_UTR 45.0%
CATACCCTCAATCACATCTC+CGG + tig0040892:5289-5308 Msa1460410:intergenic 45.0%
! GGAGATGTGATTGAGGGTAT+GGG - tig0040892:5288-5307 Msa1460410:five_prime_UTR 45.0%
! GAGATGTGATTGAGGGTATG+GGG - tig0040892:5289-5308 Msa1460410:five_prime_UTR 45.0%
GCATTTATACGATGGCGACT+AGG - tig0040892:5358-5377 Msa1460410:five_prime_UTR 45.0%
!!! TTATTATTATTTTTTTTTGA+AGG - tig0040892:4093-4112 Msa1460410:intron 5.0%
AGGCCTCATTACACCTGGAA+AGG - tig0040892:1769-1788 Msa1460410:intron 50.0%
GAGCCAACAAGTGGTAACAC+CGG - tig0040892:2206-2225 Msa1460410:CDS 50.0%
!! ATGCCGGTGTTACCACTTGT+TGG + tig0040892:2212-2231 Msa1460410:intergenic 50.0%
ACAAGTGGTAACACCGGCAT+AGG - tig0040892:2212-2231 Msa1460410:CDS 50.0%
TGGTAACACCGGCATAGGAT+TGG - tig0040892:2217-2236 Msa1460410:CDS 50.0%
TATCGACGCCAATCCTATGC+CGG + tig0040892:2228-2247 Msa1460410:intergenic 50.0%
GACCCTGCCAAAGGAATTGA+TGG - tig0040892:2350-2369 Msa1460410:intron 50.0%
TTTCCAAATCTCAGGGCCAG+TGG + tig0040892:2556-2575 Msa1460410:intergenic 50.0%
!! TGGAGGGAGAGTTGATGCTT+TGG - tig0040892:2581-2600 Msa1460410:CDS 50.0%
GATGCTTTGGTTGCAGGGAT+AGG - tig0040892:2594-2613 Msa1460410:CDS 50.0%
TTGGTTGCAGGGATAGGAAC+TGG - tig0040892:2600-2619 Msa1460410:CDS 50.0%
TGGTTGCAGGGATAGGAACT+GGG - tig0040892:2601-2620 Msa1460410:CDS 50.0%
GGGGAACAGTAACAGGTGTT+GGG - tig0040892:2622-2641 Msa1460410:intron 50.0%
!! AGGTGTTGGGAAGTTCCTCA+AGG - tig0040892:2635-2654 Msa1460410:intron 50.0%
! GCTTTTCCCCTCTAGGTGTA+TGG - tig0040892:2738-2757 Msa1460410:intron 50.0%
! GTTCTGAATGGAGGAAAGCC+AGG - tig0040892:2783-2802 Msa1460410:intron 50.0%
!!! TCTGCAGGTGTTTTGGCATC+TGG - tig0040892:3306-3325 Msa1460410:intron 50.0%
TTTGCTACGGGGTTACAGTG+GGG + tig0040892:4308-4327 Msa1460410:intergenic 50.0%
! CTTTTGCTACGGGGTTACAG+TGG + tig0040892:4310-4329 Msa1460410:intergenic 50.0%
! TCTGAGGAGCTTTTGCTACG+GGG + tig0040892:4319-4338 Msa1460410:intergenic 50.0%
GGAACGTGATTATAGGGGGA+AGG + tig0040892:4423-4442 Msa1460410:intergenic 50.0%
ATGGGCTTGACAGCGAAGTT+AGG + tig0040892:4479-4498 Msa1460410:intergenic 50.0%
TCGCTGTCAAGCCCATTTGT+TGG - tig0040892:4483-4502 Msa1460410:intron 50.0%
CGCTGTCAAGCCCATTTGTT+GGG - tig0040892:4484-4503 Msa1460410:intron 50.0%
! CAAGCCCATTTGTTGGGCTT+AGG - tig0040892:4490-4509 Msa1460410:intron 50.0%
AGGGCCTAAGCCCAACAAAT+GGG + tig0040892:4497-4516 Msa1460410:intergenic 50.0%
TAGGGCCTAAGCCCAACAAA+TGG + tig0040892:4498-4517 Msa1460410:intergenic 50.0%
GGGAAGAGACCAGAAAATGC+AGG - tig0040892:4610-4629 Msa1460410:CDS 50.0%
GTCTCTCCAGCTGTCAATCT+AGG + tig0040892:5207-5226 Msa1460410:intergenic 50.0%
GATTGTGGCAGCTCCATAGA+GGG - tig0040892:5242-5261 Msa1460410:five_prime_UTR 50.0%
TGACGTACCTGCAAACACTC+CGG - tig0040892:5267-5286 Msa1460410:five_prime_UTR 50.0%
ACACTCCGGAGATGTGATTG+AGG - tig0040892:5281-5300 Msa1460410:five_prime_UTR 50.0%
CACTCCGGAGATGTGATTGA+GGG - tig0040892:5282-5301 Msa1460410:five_prime_UTR 50.0%
CGGAGATGTGATTGAGGGTA+TGG - tig0040892:5287-5306 Msa1460410:five_prime_UTR 50.0%
ATGGCGACTAGGCTTTCCTT+AGG - tig0040892:5369-5388 Msa1460410:five_prime_UTR 50.0%
TGGCGACTAGGCTTTCCTTA+GGG - tig0040892:5370-5389 Msa1460410:five_prime_UTR 50.0%
!! TGGCGTCGATAGCAGCAATG+AGG - tig0040892:2237-2256 Msa1460410:CDS 55.0%
!! GGCGTCGATAGCAGCAATGA+GGG - tig0040892:2238-2257 Msa1460410:CDS 55.0%
! GCGTCGATAGCAGCAATGAG+GGG - tig0040892:2239-2258 Msa1460410:CDS 55.0%
AGACCACTGGCCCTGAGATT+TGG - tig0040892:2550-2569 Msa1460410:intron 55.0%
GGTTGCAGGGATAGGAACTG+GGG - tig0040892:2602-2621 Msa1460410:CDS 55.0%
GTTGCAGGGATAGGAACTGG+GGG - tig0040892:2603-2622 Msa1460410:CDS 55.0%
GGAACTGGGGGAACAGTAAC+AGG - tig0040892:2615-2634 Msa1460410:CDS 55.0%
GGGGGAACAGTAACAGGTGT+TGG - tig0040892:2621-2640 Msa1460410:intron 55.0%
!! CAGCACCGATCCCTTGGATT+AGG + tig0040892:3578-3597 Msa1460410:intergenic 55.0%
CTAATCCAAGGGATCGGTGC+TGG - tig0040892:3576-3595 Msa1460410:CDS 55.0%
GGATTGTGGCAGCTCCATAG+AGG - tig0040892:5241-5260 Msa1460410:five_prime_UTR 55.0%
CAGGTACGTCACTCCCTCTA+TGG + tig0040892:5258-5277 Msa1460410:intergenic 55.0%
! CACATCTCCGGAGTGTTTGC+AGG + tig0040892:5277-5296 Msa1460410:intergenic 55.0%
!! TGGTGTCGTTCCCCCTATCC+TGG - tig0040892:3596-3615 Msa1460410:CDS 60.0%
ACTGCGAGCTTTCGGAGCCG+AGG - tig0040892:2316-2335 Msa1460410:intron 65.0%
!! CGACACCAGCACCGATCCCT+TGG + tig0040892:3584-3603 Msa1460410:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0040892 gene 803 5400 803 ID=Msa1460410;Name=Msa1460410
tig0040892 mRNA 803 5400 803 ID=Msa1460410-mRNA-1;Parent=Msa1460410;Name=Msa1460410-mRNA-1;_AED=0.30;_eAED=0.30;_QI=399|1|1|1|0.7|0.72|11|519|323
tig0040892 exon 803 1411 803 ID=Msa1460410-mRNA-1:exon:22722;Parent=Msa1460410-mRNA-1
tig0040892 exon 1558 1638 1558 ID=Msa1460410-mRNA-1:exon:22721;Parent=Msa1460410-mRNA-1
tig0040892 exon 2200 2259 2200 ID=Msa1460410-mRNA-1:exon:22720;Parent=Msa1460410-mRNA-1
tig0040892 exon 2556 2635 2556 ID=Msa1460410-mRNA-1:exon:22719;Parent=Msa1460410-mRNA-1
tig0040892 exon 3399 3450 3399 ID=Msa1460410-mRNA-1:exon:22718;Parent=Msa1460410-mRNA-1
tig0040892 exon 3526 3663 3526 ID=Msa1460410-mRNA-1:exon:22717;Parent=Msa1460410-mRNA-1
tig0040892 exon 3746 4009 3746 ID=Msa1460410-mRNA-1:exon:22716;Parent=Msa1460410-mRNA-1
tig0040892 exon 4413 4470 4413 ID=Msa1460410-mRNA-1:exon:22715;Parent=Msa1460410-mRNA-1
tig0040892 exon 4582 4691 4582 ID=Msa1460410-mRNA-1:exon:22714;Parent=Msa1460410-mRNA-1
tig0040892 exon 4850 4916 4850 ID=Msa1460410-mRNA-1:exon:22713;Parent=Msa1460410-mRNA-1
tig0040892 exon 5030 5400 5030 ID=Msa1460410-mRNA-1:exon:22712;Parent=Msa1460410-mRNA-1
tig0040892 five_prime_UTR 5030 5400 5030 ID=Msa1460410-mRNA-1:five_prime_utr;Parent=Msa1460410-mRNA-1
tig0040892 five_prime_UTR 4889 4916 4889 ID=Msa1460410-mRNA-1:five_prime_utr;Parent=Msa1460410-mRNA-1
tig0040892 CDS 4850 4888 4850 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 4582 4691 4582 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 4413 4470 4413 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 3746 4009 3746 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 3526 3663 3526 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 3399 3450 3399 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 2556 2635 2556 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 2200 2259 2200 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 1558 1638 1558 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 CDS 1322 1411 1322 ID=Msa1460410-mRNA-1:cds;Parent=Msa1460410-mRNA-1
tig0040892 three_prime_UTR 803 1321 803 ID=Msa1460410-mRNA-1:three_prime_utr;Parent=Msa1460410-mRNA-1
Gene Sequence

>Msa1460410

ATGGACCAACACTTTGCAATCAAGAAGGATGTAACTGAATTAATAGGAAACACACCATTGGTATATTTAAACAACATTACAGAAGGGTGTGTAGCTGGTATTGCTGCTAAGCTAGAATACTTGCAATCCTGCTGCAGTGTTAAAGATAGGATATCGTTGAGCATGATTGAAGATGCCGAGAGTAAAGGCCTCATTACACCTGGAAAGACTGTTCTTGTTGAGCCAACAAGTGGTAACACCGGCATAGGATTGGCGTCGATAGCAGCAATGAGGGGCTATAAACTTTTAGTGACTATGCCAGCTTATGTGAGTCTTGAAAGAAAAATTATACTGCGAGCTTTCGGAGCCGAGGTATATTTGACAGACCCTGCCAAAGGAATTGATGGTGTTTTTCAGAAAGCAGACGAGCTATTAACGAAGACGCCTAATAGTTATATGCTCAATCAGTTTGAAAACTCTGCCAATCCAAAGATTCATTACGAGACCACTGGCCCTGAGATTTGGAAAGACTCTGGAGGGAGAGTTGATGCTTTGGTTGCAGGGATAGGAACTGGGGGAACAGTAACAGGTGTTGGGAAGTTCCTCAAGGAGAAAAACCCAGAGATCAAGGTGTATGGTGTAGAACCATCTGAAAGTGCAGTTCTGAATGGAGGAAAGCCAGGCAAACACCTAATCCAAGGGATCGGTGCTGGTGTCGTTCCCCCTATCCTGGAAGTTGATCTACTAGATGAAGTTATTCAGGTTTCAAGTGAAGAAGCTATAAAAACTGCTAAGCTGCTTGCCTTGAAAGAAGGTTTACTGATGGGAATTTCATCAGGTGCTGCAACAGCAGCTGCAATAAAATTAGGGAAGAGACCAGAAAATGCAGGAAAGCTCATTGTTGTGATTTTTCCCAGTTTTGGAGAGCGATACTTGTCTTCACCGCTTTTTGAATCCATCAGGCATGAAGCTGAACAAATGACATTTGACTGA
Protein sequence

>Msa1460410

MDQHFAIKKDVTELIGNTPLVYLNNITEGCVAGIAAKLEYLQSCCSVKDRISLSMIEDAESKGLITPGKTVLVEPTSGNTGIGLASIAAMRGYKLLVTMPAYVSLERKIILRAFGAEVYLTDPAKGIDGVFQKADELLTKTPNSYMLNQFENSANPKIHYETTGPEIWKDSGGRVDALVAGIGTGGTVTGVGKFLKEKNPEIKVYGVEPSESAVLNGGKPGKHLIQGIGAGVVPPILEVDLLDEVIQVSSEEAIKTAKLLALKEGLLMGISSGAATAAAIKLGKRPENAGKLIVVIFPSFGERYLSSPLFESIRHEAEQMTFD*