AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042410 MtrunA17_Chr1g0191051 96.285 323 12 0 1 323 1 323 0.0 632
Msa0042410 MtrunA17_Chr1g0191061 77.716 359 34 2 11 323 25 383 0.0 515
Msa0042410 MtrunA17_Chr1g0191041 75.394 317 78 0 7 323 8 324 9.71e-160 449
Msa0042410 MtrunA17_Chr5g0394491 73.520 321 85 0 3 323 4 324 1.03e-158 446
Msa0042410 MtrunA17_Chr1g0205381 72.897 321 87 0 3 323 4 324 1.64e-156 441
Msa0042410 MtrunA17_Chr4g0045721 63.323 319 117 0 2 320 42 360 3.81e-153 434
Msa0042410 MtrunA17_Chr1g0191071 81.041 269 46 1 55 323 1 264 4.72e-143 404
Msa0042410 MtrunA17_Chr4g0045771 62.102 314 110 2 7 320 47 351 7.42e-143 407
Msa0042410 MtrunA17_Chr4g0045781 66.561 314 105 0 7 320 66 379 6.12e-142 406
Msa0042410 MtrunA17_Chr7g0248021 63.057 314 116 0 7 320 61 374 1.65e-141 405
Msa0042410 MtrunA17_Chr7g0254401 60.510 314 114 1 7 320 65 368 3.61e-126 365
Msa0042410 MtrunA17_Chr5g0446431 30.595 353 186 5 11 306 48 398 2.41e-45 159
Msa0042410 MtrunA17_Chr2g0310201 40.650 123 46 4 86 181 12 134 4.62e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042410 AT4G14880.5 71.609 317 90 0 7 323 5 321 1.54e-157 443
Msa0042410 AT4G14880.3 71.609 317 90 0 7 323 5 321 1.54e-157 443
Msa0042410 AT4G14880.4 71.609 317 90 0 7 323 5 321 1.54e-157 443
Msa0042410 AT4G14880.2 71.609 317 90 0 7 323 5 321 1.54e-157 443
Msa0042410 AT4G14880.1 71.609 317 90 0 7 323 5 321 1.54e-157 443
Msa0042410 AT3G04940.1 69.906 319 96 0 2 320 3 321 1.27e-155 439
Msa0042410 AT3G04940.2 69.906 319 96 0 2 320 3 321 1.27e-155 439
Msa0042410 AT2G43750.1 71.019 314 91 0 7 320 75 388 4.86e-153 435
Msa0042410 AT2G43750.2 71.019 314 91 0 7 320 75 388 4.86e-153 435
Msa0042410 AT3G59760.3 70.064 314 94 0 7 320 113 426 2.79e-152 434
Msa0042410 AT3G59760.1 70.064 314 94 0 7 320 113 426 3.45e-152 434
Msa0042410 AT5G28020.2 67.183 323 106 0 1 323 1 323 2.55e-146 415
Msa0042410 AT5G28020.4 67.183 323 106 0 1 323 1 323 2.55e-146 415
Msa0042410 AT5G28020.1 67.183 323 106 0 1 323 1 323 2.55e-146 415
Msa0042410 AT5G28020.3 67.183 323 106 0 1 323 1 323 2.55e-146 415
Msa0042410 AT5G28020.6 67.183 323 106 0 1 323 1 323 2.55e-146 415
Msa0042410 AT5G28030.1 68.421 323 102 0 1 323 1 323 2.68e-145 412
Msa0042410 AT5G28030.4 68.421 323 102 0 1 323 1 323 2.68e-145 412
Msa0042410 AT5G28030.5 68.421 323 102 0 1 323 1 323 2.68e-145 412
Msa0042410 AT5G28030.2 68.421 323 102 0 1 323 1 323 2.68e-145 412
Msa0042410 AT3G61440.1 61.661 313 120 0 8 320 50 362 1.52e-136 392
Msa0042410 AT3G59760.2 69.550 289 88 0 7 295 113 401 1.37e-134 389
Msa0042410 AT3G22460.1 67.286 269 68 1 55 323 1 249 9.22e-124 355
Msa0042410 AT3G03630.1 59.633 327 116 2 2 322 88 404 9.58e-124 361
Msa0042410 AT3G61440.2 62.782 266 99 0 55 320 1 266 9.69e-115 333
Msa0042410 AT5G28030.3 68.000 250 80 0 1 250 1 250 5.92e-112 325
Msa0042410 AT3G61440.4 59.316 263 107 0 8 270 50 312 6.51e-110 323
Msa0042410 AT3G61440.3 61.667 240 92 0 81 320 2 241 1.47e-100 296
Msa0042410 AT5G28020.5 65.823 237 81 0 87 323 1 237 4.27e-96 284
Msa0042410 AT3G22460.2 71.823 181 51 0 7 187 8 188 9.56e-94 276
Msa0042410 AT1G55880.1 29.006 362 197 7 3 306 36 395 1.18e-41 150
Msa0042410 AT1G55880.2 32.157 255 131 5 3 216 36 289 3.44e-36 134

Find 129 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGCAGCTGCAATAAAATT+AGG 0.184994 1_1:-73266017 Msa0042410:CDS
CAATTCATTGTGAAGTTAAT+AGG 0.233028 1_1:-73269121 Msa0042410:intron
GAGAGACAACATTGTGATTA+TGG 0.249845 1_1:-73265386 Msa0042410:three_prime_UTR
TCTACTAGATGAAGTTATTC+AGG 0.259370 1_1:-73267007 Msa0042410:intron
TTGACATTGACTTGAGATTC+TGG 0.270315 1_1:-73269733 Msa0042410:five_prime_UTR
CAAGTATCGCTCTCCAAAAC+TGG 0.276395 1_1:+73265804 None:intergenic
TGCCTTGAAAGAAGGTTTAC+TGG 0.283658 1_1:-73266653 Msa0042410:intron
AGTCATGTGTTAGCATTTAT+AGG 0.290392 1_1:-73265260 Msa0042410:three_prime_UTR
ATGACTATATTTAAAGTAAC+TGG 0.299376 1_1:+73265559 None:intergenic
TTGGTTGCAGGGATAGGAAC+TGG 0.301174 1_1:-73268033 Msa0042410:CDS
ATTTGACTAATTACCTTTCC+AGG 0.303581 1_1:+73268836 None:intergenic
AGAGTTGATGCTTTGGTTGC+AGG 0.314791 1_1:-73268045 Msa0042410:CDS
GGTAAACTAATGGTAGCTTT+TGG 0.315050 1_1:-73269581 Msa0042410:five_prime_UTR
AGACCACTGGCCCTGAGATT+TGG 0.324065 1_1:-73268083 Msa0042410:CDS
ACTTCACTTAATCACAGTTT+AGG 0.343364 1_1:+73269489 None:intergenic
CTTACTATACCAAGCTGAAT+AGG 0.354323 1_1:+73269464 None:intergenic
TGGAGGGAGAGTTGATGCTT+TGG 0.358657 1_1:-73268052 Msa0042410:CDS
ACTATTCATACCTTGATCTC+TGG 0.360280 1_1:+73267967 None:intergenic
TGGTTAATTAATAGAAGAAC+AGG 0.369371 1_1:-73269781 Msa0042410:five_prime_UTR
CCAGAGTCTTTCCAAATCTC+AGG 0.373679 1_1:+73268072 None:intergenic
CGGAGATGTGATTGAGGGTA+TGG 0.374950 1_1:-73265319 Msa0042410:three_prime_UTR
CTTTGTTGAATAATAGCGTT+TGG 0.382842 1_1:-73265628 Msa0042410:three_prime_UTR
CATCTAGTAGATCAACTTCC+AGG 0.383555 1_1:+73267019 None:intergenic
AAAATTATACTGCGAGCTTT+CGG 0.393798 1_1:-73268325 Msa0042410:CDS
CAGGTACATCACTCCCTCTA+TGG 0.403105 1_1:+73265351 None:intergenic
TGATTGAGCATATAACTATT+AGG 0.407097 1_1:+73268223 None:intergenic
GTCTCTCCAGCTGTCAATCT+AGG 0.407905 1_1:+73265402 None:intergenic
CATTACCATTTGATCAGGAT+TGG 0.408628 1_1:-73265426 Msa0042410:three_prime_UTR
TACCAGTAAACCTTCTTTCA+AGG 0.409533 1_1:+73266651 None:intergenic
ATGGCGACTAGGCTTTCCTT+AGG 0.412870 1_1:-73265237 Msa0042410:three_prime_UTR
ATGCCGGTGTTACCACTTGT+TGG 0.412993 1_1:+73268424 None:intergenic
TTGCAGATGGGAATTTCATC+AGG 0.416958 1_1:-73266047 Msa0042410:intron
CACATCTCCGGAGTGTTTGC+AGG 0.419919 1_1:+73265332 None:intergenic
CACAAAACATGGTAAACTAA+TGG 0.422031 1_1:-73269591 Msa0042410:five_prime_UTR
TTGTTCTGCTTCATGCCTGA+TGG 0.422452 1_1:+73265762 None:intergenic
GGAACCATTACCATTTGATC+AGG 0.422790 1_1:-73265431 Msa0042410:three_prime_UTR
CAGCAGCTGCAATAAAATTA+GGG 0.431631 1_1:-73266016 Msa0042410:CDS
CAGCACCGATCCCTTGGATT+AGG 0.432171 1_1:+73267058 None:intergenic
TTGATCCTTACTCGTGTGAA+TGG 0.434994 1_1:+73265455 None:intergenic
CTATTCATACCTTGATCTCT+GGG 0.435238 1_1:+73267968 None:intergenic
TTTCTCCATTCACACGAGTA+AGG 0.439368 1_1:-73265460 Msa0042410:three_prime_UTR
AGACAGAATTTGTTAACAAA+AGG 0.440503 1_1:-73265500 Msa0042410:three_prime_UTR
CCTGCTGCAGTGTTAAAGAT+AGG 0.441852 1_1:-73269018 Msa0042410:intron
CTTTCAAGACTCACATAAGC+TGG 0.442324 1_1:+73268349 None:intergenic
CGACACCAGCACCGATCCCT+TGG 0.442965 1_1:+73267052 None:intergenic
GACCCTGCCAAAGGAATTGA+TGG 0.448526 1_1:-73268283 Msa0042410:CDS
GAGTTGATGCTTTGGTTGCA+GGG 0.455243 1_1:-73268044 Msa0042410:CDS
ACACCATCAATTCCTTTGGC+AGG 0.457831 1_1:+73268280 None:intergenic
TAGGTCCAATCCTGATCAAA+TGG 0.460109 1_1:+73265421 None:intergenic
GTAGATCAACTTCCAGGATA+GGG 0.464520 1_1:+73267025 None:intergenic
TGTAAATAACACCTTTGGAT+TGG 0.472231 1_1:+73268186 None:intergenic
CCTATCTTTAACACTGCAGC+AGG 0.474156 1_1:+73269018 None:intergenic
AAGCTGCTTGCCTTGAAAGA+AGG 0.474497 1_1:-73266661 Msa0042410:CDS
TGGTTGCAGGGATAGGAACT+GGG 0.484341 1_1:-73268032 Msa0042410:CDS
CAAAAGGTAAGATATTCAAT+TGG 0.485689 1_1:-73269801 Msa0042410:five_prime_UTR
GGAGATGTGATTGAGGGTAT+GGG 0.488789 1_1:-73265318 Msa0042410:three_prime_UTR
GGGGAACAGTAACAGGTGTT+GGG 0.494810 1_1:-73268011 Msa0042410:CDS
CAATCCTGATCAAATGGTAA+TGG 0.496170 1_1:+73265427 None:intergenic
CCTTCTTGATTGCAAAGTGT+TGG 0.496354 1_1:+73269304 None:intergenic
GATGCTTTGGTTGCAGGGAT+AGG 0.501960 1_1:-73268039 Msa0042410:CDS
AGTAGATCAACTTCCAGGAT+AGG 0.502056 1_1:+73267024 None:intergenic
CACAATTGTGACAGTAGAGC+TGG 0.505735 1_1:+73265687 None:intergenic
TCTGAAAGTGCAGTTCTGAA+TGG 0.514085 1_1:-73267862 Msa0042410:CDS
ATTGAAGATGCCGAGAGTAA+AGG 0.514802 1_1:-73268869 Msa0042410:CDS
CTAATCCAAGGGATCGGTGC+TGG 0.516701 1_1:-73267057 Msa0042410:CDS
TGGCGACTAGGCTTTCCTTA+GGG 0.522654 1_1:-73265236 Msa0042410:three_prime_UTR
TTACCTTTCCAGGTGTAATG+AGG 0.523442 1_1:+73268846 None:intergenic
TTCAGAACTGCACTTTCAGA+TGG 0.538348 1_1:+73267865 None:intergenic
CAAATGACATTTGACTGAAG+TGG 0.543569 1_1:-73265742 Msa0042410:exon
CCTGAGATTTGGAAAGACTC+TGG 0.544001 1_1:-73268072 Msa0042410:CDS
ACAAGTGGTAACACCGGCAT+AGG 0.544602 1_1:-73268421 Msa0042410:CDS
GTGAAGTCTCCTATTCAGCT+TGG 0.545114 1_1:-73269473 Msa0042410:five_prime_UTR
GTTCTGAATGGAGGAAAGCC+AGG 0.546295 1_1:-73267850 Msa0042410:intron
TAGATTCATTACGAGACCAC+TGG 0.548191 1_1:-73268096 Msa0042410:CDS
TGTAATGAGGCCTTTACTCT+CGG 0.551658 1_1:+73268859 None:intergenic
CACCATCAATTCCTTTGGCA+GGG 0.555618 1_1:+73268281 None:intergenic
CACTCCGGAGATGTGATTGA+GGG 0.556021 1_1:-73265324 Msa0042410:three_prime_UTR
GGCGTCGATAGCAGCAATGA+GGG 0.558283 1_1:-73268395 Msa0042410:CDS
ATGTGTTAGCATTTATAGGA+TGG 0.559639 1_1:-73265256 Msa0042410:three_prime_UTR
TGGTAACACCGGCATAGGAT+TGG 0.559661 1_1:-73268416 Msa0042410:CDS
ATTGGACCTAGATTGACAGC+TGG 0.560629 1_1:-73265408 Msa0042410:three_prime_UTR
AGGCCTCATTACACCTGGAA+AGG 0.563587 1_1:-73268849 Msa0042410:intron
ATTTAAAGTTTATGTCTGCA+TGG 0.568287 1_1:+73265585 None:intergenic
GGATTGTGGCAGCTCCATAG+AGG 0.569117 1_1:-73265365 Msa0042410:three_prime_UTR
TGAATTGGTGGATTTCCCTA+AGG 0.569920 1_1:+73265221 None:intergenic
GGGAAGAGACCAGAAAATGC+AGG 0.570015 1_1:-73265996 Msa0042410:CDS
TATTTAAACAACATTACAGA+AGG 0.572300 1_1:-73269082 Msa0042410:CDS
ACACTCCGGAGATGTGATTG+AGG 0.573023 1_1:-73265325 Msa0042410:three_prime_UTR
CATACCCTCAATCACATCTC+CGG 0.573818 1_1:+73265320 None:intergenic
CAGCTCTACTGTCACAATTG+TGG 0.575521 1_1:-73265686 Msa0042410:three_prime_UTR
AAAGGCAAACACCTAATCCA+AGG 0.576831 1_1:-73267069 Msa0042410:intron
TAGATCAACTTCCAGGATAG+GGG 0.577360 1_1:+73267026 None:intergenic
AACATTGTGATTATGGATTG+TGG 0.587206 1_1:-73265379 Msa0042410:three_prime_UTR
AGTAAAGGCCTCATTACACC+TGG 0.589255 1_1:-73268854 Msa0042410:CDS
GCATTTATAGGATGGCGACT+AGG 0.592649 1_1:-73265248 Msa0042410:three_prime_UTR
GTTCTTGTTGAGCCAACAAG+TGG 0.593333 1_1:-73268436 Msa0042410:CDS
TTTCCAAATCTCAGGGCCAG+TGG 0.596982 1_1:+73268080 None:intergenic
GAGATGTGATTGAGGGTATG+GGG 0.597375 1_1:-73265317 Msa0042410:three_prime_UTR
TATCGACGCCAATCCTATGC+CGG 0.597404 1_1:+73268408 None:intergenic
GCTTTCTTCATCAGATAACA+TGG 0.598151 1_1:-73269328 Msa0042410:exon
AGATTTGGAAAGACTCTGGA+GGG 0.598831 1_1:-73268068 Msa0042410:CDS
TTCACACGAGTAAGGATCAA+AGG 0.601177 1_1:-73265452 Msa0042410:three_prime_UTR
CAGAGTCTTTCCAAATCTCA+GGG 0.601201 1_1:+73268073 None:intergenic
GTTAATAGGAAACACACCAT+TGG 0.604534 1_1:-73269107 Msa0042410:CDS
AAGTATCGCTCTCCAAAACT+GGG 0.605328 1_1:+73265805 None:intergenic
CCAACACTTTGCAATCAAGA+AGG 0.607054 1_1:-73269304 Msa0042410:CDS
TGAAAACTCTGCCAATCCAA+AGG 0.611620 1_1:-73268197 Msa0042410:intron
GAGATTTGGAAAGACTCTGG+AGG 0.616942 1_1:-73268069 Msa0042410:CDS
ACTGCGAGCTTTCGGAGCCG+AGG 0.618497 1_1:-73268317 Msa0042410:CDS
TGGCGTCGATAGCAGCAATG+AGG 0.618801 1_1:-73268396 Msa0042410:CDS
AAACACCTAATCCAAGGGAT+CGG 0.628864 1_1:-73267063 Msa0042410:CDS
TGATGTACCTGCAAACACTC+CGG 0.629681 1_1:-73265339 Msa0042410:three_prime_UTR
GATTGTGGCAGCTCCATAGA+GGG 0.630144 1_1:-73265364 Msa0042410:three_prime_UTR
ATTGAACTTGATGAATCGAG+AGG 0.635155 1_1:+73269702 None:intergenic
TAAATGCTAACACATGACTC+AGG 0.638286 1_1:+73265264 None:intergenic
AGATCAACTTCCAGGATAGG+GGG 0.642892 1_1:+73267027 None:intergenic
AAGGCAAACACCTAATCCAA+GGG 0.643306 1_1:-73267068 Msa0042410:CDS
AGGGTCTGTCAAATATACCT+CGG 0.651115 1_1:+73268300 None:intergenic
TAACATTTATCCACAAAACA+TGG 0.654297 1_1:-73269602 Msa0042410:five_prime_UTR
ATGTTGTTTAAATATACCAA+TGG 0.656492 1_1:+73269091 None:intergenic
ATTTAAACAACATTACAGAA+GGG 0.658178 1_1:-73269081 Msa0042410:CDS
TATTTGACAGACCCTGCCAA+AGG 0.662474 1_1:-73268292 Msa0042410:CDS
AGGTGTTGGGAAGTTCCTCA+AGG 0.665059 1_1:-73267998 Msa0042410:CDS
GAAAGTGCAGTTCTGAATGG+AGG 0.666727 1_1:-73267859 Msa0042410:CDS
GGTTGCAGGGATAGGAACTG+GGG 0.673121 1_1:-73268031 Msa0042410:CDS
GAGCCAACAAGTGGTAACAC+CGG 0.677684 1_1:-73268427 Msa0042410:CDS
GCGTCGATAGCAGCAATGAG+GGG 0.705710 1_1:-73268394 Msa0042410:CDS
GGTTAATTAATAGAAGAACA+GGG 0.707502 1_1:-73269780 Msa0042410:five_prime_UTR
GTTGCAGGGATAGGAACTGG+GGG 0.729118 1_1:-73268030 Msa0042410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAGTAATTTTCTTAAT+AGG - chr1_1:73265383-73265402 Msa0042410:three_prime_UTR 10.0%
!! AAATTCTTAATTTCTTACTA+AGG + chr1_1:73266094-73266113 None:intergenic 15.0%
!! AACATTATAAGTAATAACAT+TGG + chr1_1:73266466-73266485 None:intergenic 15.0%
!! TATATATTAACAAATTATGC+AGG + chr1_1:73268160-73268179 None:intergenic 15.0%
!! TATGTTGAATAAACTTATTA+AGG + chr1_1:73269084-73269103 None:intergenic 15.0%
!!! TTCATCAAGTTCAATTTTAT+CGG - chr1_1:73265334-73265353 Msa0042410:three_prime_UTR 20.0%
!!! AGTAATTTTCTTAATAGGAT+TGG - chr1_1:73265388-73265407 Msa0042410:three_prime_UTR 20.0%
!!! GTAATTTTCTTAATAGGATT+GGG - chr1_1:73265389-73265408 Msa0042410:three_prime_UTR 20.0%
!!! ATGTTGTTTAAATATACCAA+TGG + chr1_1:73265940-73265959 None:intergenic 20.0%
!! TATTTAAACAACATTACAGA+AGG - chr1_1:73265946-73265965 Msa0042410:intron 20.0%
!! ATTTAAACAACATTACAGAA+GGG - chr1_1:73265947-73265966 Msa0042410:intron 20.0%
!!! AATCGAGTTATTCAAATTTT+GGG - chr1_1:73266435-73266454 Msa0042410:intron 20.0%
!! AACAATATGAACAATAGTAT+AGG + chr1_1:73266517-73266536 None:intergenic 20.0%
!!! AGTGTAATCTTTTTAAACAA+TGG - chr1_1:73266556-73266575 Msa0042410:intron 20.0%
!!! ACAGTTCATATTTTCTAATT+TGG - chr1_1:73266862-73266881 Msa0042410:intron 20.0%
!!! TATTTTCTAATTTGGTTGTT+TGG - chr1_1:73266870-73266889 Msa0042410:intron 20.0%
!! AAAACAACGACAAAATTAAT+TGG + chr1_1:73266913-73266932 None:intergenic 20.0%
!! TAGAATTGTTCTATCAAAAT+TGG - chr1_1:73267639-73267658 Msa0042410:intron 20.0%
!! TATTTGATTCTTCTAATTTC+TGG - chr1_1:73268239-73268258 Msa0042410:CDS 20.0%
!!! GACAGTATACAATTTTTTTA+CGG - chr1_1:73268553-73268572 Msa0042410:intron 20.0%
!!! ATGACTATATTTAAAGTAAC+TGG + chr1_1:73269472-73269491 None:intergenic 20.0%
! TGGTTAATTAATAGAAGAAC+AGG - chr1_1:73265247-73265266 Msa0042410:three_prime_UTR 25.0%
! GGTTAATTAATAGAAGAACA+GGG - chr1_1:73265248-73265267 Msa0042410:three_prime_UTR 25.0%
!! TCATCAAGTTCAATTTTATC+GGG - chr1_1:73265335-73265354 Msa0042410:three_prime_UTR 25.0%
! TAACATTTATCCACAAAACA+TGG - chr1_1:73265426-73265445 Msa0042410:three_prime_UTR 25.0%
!!! GTGTATATATTTTAAGAGAC+TGG + chr1_1:73265490-73265509 None:intergenic 25.0%
! CAATTCATTGTGAAGTTAAT+AGG - chr1_1:73265907-73265926 Msa0042410:intron 25.0%
!!! TAATATTGTTTTTCTCACTC+AGG - chr1_1:73266121-73266140 Msa0042410:intron 25.0%
!! AGATATCTAAGTTTTCAAAC+TGG - chr1_1:73266216-73266235 Msa0042410:intron 25.0%
!! GATATCTAAGTTTTCAAACT+GGG - chr1_1:73266217-73266236 Msa0042410:intron 25.0%
! CTAACTCATCATTCAAAAAT+TGG - chr1_1:73266295-73266314 Msa0042410:intron 25.0%
!!! CTTTATGAACTCTTTTAAGT+CGG - chr1_1:73266341-73266360 Msa0042410:intron 25.0%
! TACTCAAACTTGTAATAGTA+TGG - chr1_1:73266403-73266422 Msa0042410:intron 25.0%
!! GAATCGAGTTATTCAAATTT+TGG - chr1_1:73266434-73266453 Msa0042410:intron 25.0%
! AATATGAACAATAGTATAGG+TGG + chr1_1:73266514-73266533 None:intergenic 25.0%
! TGATTGAGCATATAACTATT+AGG + chr1_1:73266808-73266827 None:intergenic 25.0%
!!! TGATTTTGAGTATTTCTTTC+TGG - chr1_1:73267209-73267228 Msa0042410:intron 25.0%
! TGTGAATGTTATTGTATTCT+TGG - chr1_1:73267256-73267275 Msa0042410:intron 25.0%
! ACATAGACATACAACAAATT+GGG + chr1_1:73267399-73267418 None:intergenic 25.0%
! TACATAGACATACAACAAAT+TGG + chr1_1:73267400-73267419 None:intergenic 25.0%
!!! AATTTGTTGTATGTCTATGT+AGG - chr1_1:73267399-73267418 Msa0042410:intron 25.0%
!! TTTTATGTTTGGATTTTGGA+GGG + chr1_1:73267558-73267577 None:intergenic 25.0%
!! AACCTTTTATGTTTGGATTT+TGG + chr1_1:73267562-73267581 None:intergenic 25.0%
!! AGGTATAAACCTTTTATGTT+TGG + chr1_1:73267569-73267588 None:intergenic 25.0%
! TGGAAAAATCAATCAGTTAA+CGG + chr1_1:73267925-73267944 None:intergenic 25.0%
!!! TATCAGTTTTTTCTAGAATC+TGG - chr1_1:73268076-73268095 Msa0042410:CDS 25.0%
!!! ACTCTCTTTTGTTTCTTTTT+CGG - chr1_1:73268122-73268141 Msa0042410:intron 25.0%
! AATACTAGCTGTTAATACAA+GGG - chr1_1:73268278-73268297 Msa0042410:CDS 25.0%
! GTTATATAACACAAAACTGA+AGG + chr1_1:73268453-73268472 None:intergenic 25.0%
! GTTATATAACTCAGCAAATA+TGG - chr1_1:73268463-73268482 Msa0042410:intron 25.0%
! AGCATAACAAAATGACATTA+CGG + chr1_1:73268599-73268618 None:intergenic 25.0%
!!! TTAGGAAATTATTGATGATG+TGG + chr1_1:73268855-73268874 None:intergenic 25.0%
!! AAGAGTTTAGAAAGTTTGTT+AGG + chr1_1:73268929-73268948 None:intergenic 25.0%
!! ATTTAAAGTTTATGTCTGCA+TGG + chr1_1:73269446-73269465 None:intergenic 25.0%
!!! AGACAGAATTTGTTAACAAA+AGG - chr1_1:73269528-73269547 Msa0042410:five_prime_UTR 25.0%
!! CATTAGTTTACCATGTTTTG+TGG + chr1_1:73265439-73265458 None:intergenic 30.0%
CACAAAACATGGTAAACTAA+TGG - chr1_1:73265437-73265456 Msa0042410:three_prime_UTR 30.0%
GTTGAAAAATCATTACTACG+AGG + chr1_1:73265516-73265535 None:intergenic 30.0%
ACTTCACTTAATCACAGTTT+AGG + chr1_1:73265542-73265561 None:intergenic 30.0%
CTCACATAAAAGACAAAACA+AGG + chr1_1:73265610-73265629 None:intergenic 30.0%
!!! TCTGTTTTGAAAGATTTTGC+AGG - chr1_1:73265678-73265697 Msa0042410:three_prime_UTR 30.0%
! TTCACAAACTTGAACTGTTT+TGG - chr1_1:73266049-73266068 Msa0042410:intron 30.0%
ATTTGACTAATTACCTTTCC+AGG + chr1_1:73266195-73266214 None:intergenic 30.0%
CTCATCATTCAAAAATTGGT+TGG - chr1_1:73266299-73266318 Msa0042410:intron 30.0%
! CATTCAAAAATTGGTTGGTA+TGG - chr1_1:73266304-73266323 Msa0042410:intron 30.0%
! AAAATTGGTTGGTATGGTAA+AGG - chr1_1:73266310-73266329 Msa0042410:intron 30.0%
CTATTACAAGTTTGAGTATC+AGG + chr1_1:73266401-73266420 None:intergenic 30.0%
! ACTTGTAATAGTATGGACTA+TGG - chr1_1:73266410-73266429 Msa0042410:intron 30.0%
AAAATTATACTGCGAGCTTT+CGG - chr1_1:73266703-73266722 Msa0042410:intron 30.0%
AAAAACACCATCAATTCCTT+TGG + chr1_1:73266755-73266774 None:intergenic 30.0%
TGTAAATAACACCTTTGGAT+TGG + chr1_1:73266845-73266864 None:intergenic 30.0%
TGAACTGTAAATAACACCTT+TGG + chr1_1:73266850-73266869 None:intergenic 30.0%
TTTCTAATTTGGTTGTTTGG+TGG - chr1_1:73266873-73266892 Msa0042410:intron 30.0%
TTCTAATTTGGTTGTTTGGT+GGG - chr1_1:73266874-73266893 Msa0042410:intron 30.0%
CTCAAAATCATAAAATCACC+TGG + chr1_1:73267199-73267218 None:intergenic 30.0%
!! TTTATGTTTGGATTTTGGAG+GGG + chr1_1:73267557-73267576 None:intergenic 30.0%
! CTTTTATGTTTGGATTTTGG+AGG + chr1_1:73267559-73267578 None:intergenic 30.0%
CTCCAAAATCCAAACATAAA+AGG - chr1_1:73267557-73267576 Msa0042410:intron 30.0%
TCTAATGTTTCTCATGATAG+TGG + chr1_1:73267623-73267642 None:intergenic 30.0%
TTGTTCTATCAAAATTGGCT+TGG - chr1_1:73267644-73267663 Msa0042410:intron 30.0%
TATTCAAGCATAACCATTTG+AGG - chr1_1:73267899-73267918 Msa0042410:intron 30.0%
TCCATTTGAACACATTTCAA+AGG - chr1_1:73267941-73267960 Msa0042410:intron 30.0%
TCTACTAGATGAAGTTATTC+AGG - chr1_1:73268021-73268040 Msa0042410:CDS 30.0%
TGCTCTCAATACTAATACAT+TGG - chr1_1:73268045-73268064 Msa0042410:CDS 30.0%
! GAGAGTCTCATTTTATATGA+AGG + chr1_1:73268108-73268127 None:intergenic 30.0%
!! CTCTCTTTTGTTTCTTTTTC+GGG - chr1_1:73268123-73268142 Msa0042410:intron 30.0%
! AAATTATGCAGGTTTCAAGT+AGG + chr1_1:73268149-73268168 None:intergenic 30.0%
CTTGTATTAACAGCTAGTAT+TGG + chr1_1:73268279-73268298 None:intergenic 30.0%
CAATACTAGCTGTTAATACA+AGG - chr1_1:73268277-73268296 Msa0042410:CDS 30.0%
!!! GGATTTTGTTTTAACCAACA+AGG - chr1_1:73268299-73268318 Msa0042410:CDS 30.0%
!!! TTTTGTTATGCTGCTTTGAT+AGG - chr1_1:73268607-73268626 Msa0042410:intron 30.0%
CAAAATCGATATGTTACAGA+AGG - chr1_1:73268673-73268692 Msa0042410:intron 30.0%
! TGATAAATGTCTCTTTTCTG+AGG + chr1_1:73268729-73268748 None:intergenic 30.0%
ATAGAACCCTTATTATGGTT+TGG + chr1_1:73268758-73268777 None:intergenic 30.0%
! ATATGAATGTCTTTTGCAGA+TGG - chr1_1:73268968-73268987 Msa0042410:intron 30.0%
! TATGAATGTCTTTTGCAGAT+GGG - chr1_1:73268969-73268988 Msa0042410:intron 30.0%
AATACTCACAAGGAAACATT+AGG + chr1_1:73269151-73269170 None:intergenic 30.0%
CTTTGTTGAATAATAGCGTT+TGG - chr1_1:73269400-73269419 Msa0042410:intron 30.0%
! AACATTGTGATTATGGATTG+TGG - chr1_1:73269649-73269668 Msa0042410:five_prime_UTR 30.0%
AGTCATGTGTTAGCATTTAT+AGG - chr1_1:73269768-73269787 Msa0042410:five_prime_UTR 30.0%
ATGTGTTAGCATTTATAGGA+TGG - chr1_1:73269772-73269791 Msa0042410:five_prime_UTR 30.0%
!! TTGACATTGACTTGAGATTC+TGG - chr1_1:73265295-73265314 Msa0042410:three_prime_UTR 35.0%
ATTGAACTTGATGAATCGAG+AGG + chr1_1:73265329-73265348 None:intergenic 35.0%
! ATTTTATCGGGTGCCAATTT+CGG - chr1_1:73265347-73265366 Msa0042410:three_prime_UTR 35.0%
! GGTAAACTAATGGTAGCTTT+TGG - chr1_1:73265447-73265466 Msa0042410:three_prime_UTR 35.0%
! AATGGTAGCTTTTGGATCTT+AGG - chr1_1:73265455-73265474 Msa0042410:three_prime_UTR 35.0%
! ATGGTAGCTTTTGGATCTTA+GGG - chr1_1:73265456-73265475 Msa0042410:three_prime_UTR 35.0%
CTTACTATACCAAGCTGAAT+AGG + chr1_1:73265567-73265586 None:intergenic 35.0%
GCTTTCTTCATCAGATAACA+TGG - chr1_1:73265700-73265719 Msa0042410:three_prime_UTR 35.0%
! TTCACTGTCTTATTCAGCTA+TGG - chr1_1:73265817-73265836 Msa0042410:CDS 35.0%
GTTAATAGGAAACACACCAT+TGG - chr1_1:73265921-73265940 Msa0042410:intron 35.0%
CTATTCATACCTTGATCTCT+GGG + chr1_1:73267063-73267082 None:intergenic 35.0%
ACTATTCATACCTTGATCTC+TGG + chr1_1:73267064-73267083 None:intergenic 35.0%
ACATACAACAAATTGGGACT+CGG + chr1_1:73267393-73267412 None:intergenic 35.0%
TTGTATGTCTATGTAGGAGA+GGG - chr1_1:73267405-73267424 Msa0042410:intron 35.0%
! GGTTTATACCTTTTCCTCTA+AGG - chr1_1:73267578-73267597 Msa0042410:intron 35.0%
TAAACAGTCCTTAGAGGAAA+AGG + chr1_1:73267589-73267608 None:intergenic 35.0%
! TTTCCTCTAAGGACTGTTTA+AGG - chr1_1:73267589-73267608 Msa0042410:intron 35.0%
ATACCTTAAACAGTCCTTAG+AGG + chr1_1:73267595-73267614 None:intergenic 35.0%
TTGGAGAAAACTTGAAATGC+AGG - chr1_1:73267663-73267682 Msa0042410:intron 35.0%
!!! TTGCTGACTTGTCTGTTTTT+TGG - chr1_1:73267739-73267758 Msa0042410:intron 35.0%
TAAGTCAATGACAACCCAAA+GGG + chr1_1:73267785-73267804 None:intergenic 35.0%
!! GCCTTTGAAATGTGTTCAAA+TGG + chr1_1:73267945-73267964 None:intergenic 35.0%
TGTAATTCACAGAACCTTGT+TGG + chr1_1:73268316-73268335 None:intergenic 35.0%
AACAAGGTTCTGTGAATTAC+AGG - chr1_1:73268315-73268334 Msa0042410:CDS 35.0%
TACCAGTAAACCTTCTTTCA+AGG + chr1_1:73268380-73268399 None:intergenic 35.0%
TGAAAGAAGGTTTACTGGTA+TGG - chr1_1:73268380-73268399 Msa0042410:CDS 35.0%
ACATTACGGTGAGATATGAT+TGG + chr1_1:73268585-73268604 None:intergenic 35.0%
ACTCAGTCCAAACCATAATA+AGG - chr1_1:73268748-73268767 Msa0042410:intron 35.0%
CTCAGTCCAAACCATAATAA+GGG - chr1_1:73268749-73268768 Msa0042410:intron 35.0%
ACCATAATAAGGGTTCTATC+TGG - chr1_1:73268759-73268778 Msa0042410:intron 35.0%
TCCAGATAGAACCCTTATTA+TGG + chr1_1:73268763-73268782 None:intergenic 35.0%
GAAGGATGATGCAAAAGATA+AGG + chr1_1:73268799-73268818 None:intergenic 35.0%
!! GGAAATTATTGATGATGTGG+CGG + chr1_1:73268852-73268871 None:intergenic 35.0%
!! TAGAAAGTTTGTTAGGACAC+AGG + chr1_1:73268922-73268941 None:intergenic 35.0%
ACAGCAGCTGCAATAAAATT+AGG - chr1_1:73269011-73269030 Msa0042410:intron 35.0%
CAGCAGCTGCAATAAAATTA+GGG - chr1_1:73269012-73269031 Msa0042410:intron 35.0%
GACATCAACTAATACTCACA+AGG + chr1_1:73269161-73269180 None:intergenic 35.0%
CAAATGACATTTGACTGAAG+TGG - chr1_1:73269286-73269305 Msa0042410:intron 35.0%
CAATCCTGATCAAATGGTAA+TGG + chr1_1:73269604-73269623 None:intergenic 35.0%
CATTACCATTTGATCAGGAT+TGG - chr1_1:73269602-73269621 Msa0042410:five_prime_UTR 35.0%
GAGAGACAACATTGTGATTA+TGG - chr1_1:73269642-73269661 Msa0042410:five_prime_UTR 35.0%
TAAATGCTAACACATGACTC+AGG + chr1_1:73269767-73269786 None:intergenic 35.0%
GTGCCAATTTCGGTGAAAAA+CGG - chr1_1:73265357-73265376 Msa0042410:three_prime_UTR 40.0%
!! ACTCCGTTTTTCACCGAAAT+TGG + chr1_1:73265363-73265382 None:intergenic 40.0%
CCTTCTTGATTGCAAAGTGT+TGG + chr1_1:73265727-73265746 None:intergenic 40.0%
CCAACACTTTGCAATCAAGA+AGG - chr1_1:73265724-73265743 Msa0042410:three_prime_UTR 40.0%
ATTGAAGATGCCGAGAGTAA+AGG - chr1_1:73266159-73266178 Msa0042410:intron 40.0%
TGTAATGAGGCCTTTACTCT+CGG + chr1_1:73266172-73266191 None:intergenic 40.0%
TTACCTTTCCAGGTGTAATG+AGG + chr1_1:73266185-73266204 None:intergenic 40.0%
! GTTTTCAAACTGGGCTTGTA+AGG - chr1_1:73266226-73266245 Msa0042410:intron 40.0%
AAACTGGGCTTGTAAGGTTA+GGG - chr1_1:73266232-73266251 Msa0042410:intron 40.0%
CTTTCAAGACTCACATAAGC+TGG + chr1_1:73266682-73266701 None:intergenic 40.0%
AGGGTCTGTCAAATATACCT+CGG + chr1_1:73266731-73266750 None:intergenic 40.0%
TGAAAACTCTGCCAATCCAA+AGG - chr1_1:73266831-73266850 Msa0042410:intron 40.0%
TAGATTCATTACGAGACCAC+TGG - chr1_1:73266932-73266951 Msa0042410:intron 40.0%
CAGAGTCTTTCCAAATCTCA+GGG + chr1_1:73266958-73266977 None:intergenic 40.0%
AGATTTGGAAAGACTCTGGA+GGG - chr1_1:73266960-73266979 Msa0042410:intron 40.0%
!!! TAATGTTGCTTTTCCCCTCT+AGG - chr1_1:73267126-73267145 Msa0042410:intron 40.0%
TTCTACACCATACACCTAGA+GGG + chr1_1:73267143-73267162 None:intergenic 40.0%
TTCAGAACTGCACTTTCAGA+TGG + chr1_1:73267166-73267185 None:intergenic 40.0%
!! TCTGAAAGTGCAGTTCTGAA+TGG - chr1_1:73267166-73267185 Msa0042410:intron 40.0%
AATGTGATGAACGAGAGAGT+TGG - chr1_1:73267365-73267384 Msa0042410:intron 40.0%
GTTGTATGTCTATGTAGGAG+AGG - chr1_1:73267404-73267423 Msa0042410:intron 40.0%
TGTATGTCTATGTAGGAGAG+GGG - chr1_1:73267406-73267425 Msa0042410:intron 40.0%
! TTAGACATCTGCAGGTGTTT+TGG - chr1_1:73267694-73267713 Msa0042410:intron 40.0%
AGACAAGTCAGCAATCTAAC+AGG + chr1_1:73267733-73267752 None:intergenic 40.0%
CTAAGTCAATGACAACCCAA+AGG + chr1_1:73267786-73267805 None:intergenic 40.0%
AATCAGTTAACGGCCTCAAA+TGG + chr1_1:73267915-73267934 None:intergenic 40.0%
AAAGGCAAACACCTAATCCA+AGG - chr1_1:73267959-73267978 Msa0042410:intron 40.0%
AAGGCAAACACCTAATCCAA+GGG - chr1_1:73267960-73267979 Msa0042410:intron 40.0%
AAACACCTAATCCAAGGGAT+CGG - chr1_1:73267965-73267984 Msa0042410:intron 40.0%
TAGATCAACTTCCAGGATAG+GGG + chr1_1:73268005-73268024 None:intergenic 40.0%
GTAGATCAACTTCCAGGATA+GGG + chr1_1:73268006-73268025 None:intergenic 40.0%
AGTAGATCAACTTCCAGGAT+AGG + chr1_1:73268007-73268026 None:intergenic 40.0%
CATCTAGTAGATCAACTTCC+AGG + chr1_1:73268012-73268031 None:intergenic 40.0%
TGCCTTGAAAGAAGGTTTAC+TGG - chr1_1:73268375-73268394 Msa0042410:CDS 40.0%
!! TTTCTGAGGAGCTTTTGCTA+CGG + chr1_1:73268715-73268734 None:intergenic 40.0%
TGAGAGGAACGTGATTATAG+GGG + chr1_1:73268822-73268841 None:intergenic 40.0%
GTGAGAGGAACGTGATTATA+GGG + chr1_1:73268823-73268842 None:intergenic 40.0%
TGTGAGAGGAACGTGATTAT+AGG + chr1_1:73268824-73268843 None:intergenic 40.0%
! GTTTGTTAGGACACAGGTTT+GGG + chr1_1:73268916-73268935 None:intergenic 40.0%
!! AGTTTGTTAGGACACAGGTT+TGG + chr1_1:73268917-73268936 None:intergenic 40.0%
TTGCAGATGGGAATTTCATC+AGG - chr1_1:73268981-73269000 Msa0042410:intron 40.0%
! ATGAGCTTTCCTGCATTTTC+TGG + chr1_1:73269044-73269063 None:intergenic 40.0%
! CAGGTGATTTTTCCCAGTTT+TGG - chr1_1:73269211-73269230 Msa0042410:intron 40.0%
! AAGTATCGCTCTCCAAAACT+GGG + chr1_1:73269226-73269245 None:intergenic 40.0%
!! TGCCTGATGGATTCAAAAAG+CGG + chr1_1:73269256-73269275 None:intergenic 40.0%
TTTCTCCATTCACACGAGTA+AGG - chr1_1:73269568-73269587 Msa0042410:five_prime_UTR 40.0%
TTGATCCTTACTCGTGTGAA+TGG + chr1_1:73269576-73269595 None:intergenic 40.0%
TTCACACGAGTAAGGATCAA+AGG - chr1_1:73269576-73269595 Msa0042410:five_prime_UTR 40.0%
GGAACCATTACCATTTGATC+AGG - chr1_1:73269597-73269616 Msa0042410:five_prime_UTR 40.0%
TAGGTCCAATCCTGATCAAA+TGG + chr1_1:73269610-73269629 None:intergenic 40.0%
!! ATTGAGGGTATGGGGTTTTT+AGG - chr1_1:73269719-73269738 Msa0042410:five_prime_UTR 40.0%
!! TTGAGGGTATGGGGTTTTTA+GGG - chr1_1:73269720-73269739 Msa0042410:five_prime_UTR 40.0%
GTGAAGTCTCCTATTCAGCT+TGG - chr1_1:73265555-73265574 Msa0042410:three_prime_UTR 45.0%
CCTATCTTTAACACTGCAGC+AGG + chr1_1:73266013-73266032 None:intergenic 45.0%
CCTGCTGCAGTGTTAAAGAT+AGG - chr1_1:73266010-73266029 Msa0042410:CDS 45.0%
AGTAAAGGCCTCATTACACC+TGG - chr1_1:73266174-73266193 Msa0042410:intron 45.0%
CAAACTGGGCTTGTAAGGTT+AGG - chr1_1:73266231-73266250 Msa0042410:intron 45.0%
AACTGGGCTTGTAAGGTTAG+GGG - chr1_1:73266233-73266252 Msa0042410:intron 45.0%
GTTCTTGTTGAGCCAACAAG+TGG - chr1_1:73266592-73266611 Msa0042410:intron 45.0%
TATTTGACAGACCCTGCCAA+AGG - chr1_1:73266736-73266755 Msa0042410:intron 45.0%
CACCATCAATTCCTTTGGCA+GGG + chr1_1:73266750-73266769 None:intergenic 45.0%
ACACCATCAATTCCTTTGGC+AGG + chr1_1:73266751-73266770 None:intergenic 45.0%
CCAGAGTCTTTCCAAATCTC+AGG + chr1_1:73266959-73266978 None:intergenic 45.0%
CCTGAGATTTGGAAAGACTC+TGG - chr1_1:73266956-73266975 Msa0042410:intron 45.0%
GAGATTTGGAAAGACTCTGG+AGG - chr1_1:73266959-73266978 Msa0042410:intron 45.0%
!! AGAGTTGATGCTTTGGTTGC+AGG - chr1_1:73266983-73267002 Msa0042410:intron 45.0%
!! GAGTTGATGCTTTGGTTGCA+GGG - chr1_1:73266984-73267003 Msa0042410:intron 45.0%
! TCTCTGGGTTTTTCTCCTTG+AGG + chr1_1:73267048-73267067 None:intergenic 45.0%
GGAGAAAAACCCAGAGATCA+AGG - chr1_1:73267051-73267070 Msa0042410:CDS 45.0%
TCTACACCATACACCTAGAG+GGG + chr1_1:73267142-73267161 None:intergenic 45.0%
GTTCTACACCATACACCTAG+AGG + chr1_1:73267144-73267163 None:intergenic 45.0%
!! GAAAGTGCAGTTCTGAATGG+AGG - chr1_1:73267169-73267188 Msa0042410:intron 45.0%
!! GATTTTGGAGGGGAGAGTTT+TGG + chr1_1:73267547-73267566 None:intergenic 45.0%
CAGCACTATTAGACATCTGC+AGG - chr1_1:73267686-73267705 Msa0042410:intron 45.0%
AAAAGCAGCACTTAGCCCTT+TGG - chr1_1:73267767-73267786 Msa0042410:intron 45.0%
AAAGCAGCACTTAGCCCTTT+GGG - chr1_1:73267768-73267787 Msa0042410:intron 45.0%
AGATCAACTTCCAGGATAGG+GGG + chr1_1:73268004-73268023 None:intergenic 45.0%
AAGCTGCTTGCCTTGAAAGA+AGG - chr1_1:73268367-73268386 Msa0042410:CDS 45.0%
! TTTTGCTACGGGGTTACAGT+GGG + chr1_1:73268703-73268722 None:intergenic 45.0%
!! TTCTGAGGAGCTTTTGCTAC+GGG + chr1_1:73268714-73268733 None:intergenic 45.0%
GAGAGGAACGTGATTATAGG+GGG + chr1_1:73268821-73268840 None:intergenic 45.0%
ATGTGGCGGTTAATTGTGAG+AGG + chr1_1:73268838-73268857 None:intergenic 45.0%
! TAGGACACAGGTTTGGGTTA+GGG + chr1_1:73268910-73268929 None:intergenic 45.0%
! TTAGGACACAGGTTTGGGTT+AGG + chr1_1:73268911-73268930 None:intergenic 45.0%
CTTCTGAATCGTTGTTGTGC+AGG - chr1_1:73269192-73269211 Msa0042410:intron 45.0%
! CAAGTATCGCTCTCCAAAAC+TGG + chr1_1:73269227-73269246 None:intergenic 45.0%
!!! CACCGCTTTTTGAATCCATC+AGG - chr1_1:73269251-73269270 Msa0042410:intron 45.0%
TTGTTCTGCTTCATGCCTGA+TGG + chr1_1:73269269-73269288 None:intergenic 45.0%
CACAATTGTGACAGTAGAGC+TGG + chr1_1:73269344-73269363 None:intergenic 45.0%
CAGCTCTACTGTCACAATTG+TGG - chr1_1:73269342-73269361 Msa0042410:intron 45.0%
ATTGGACCTAGATTGACAGC+TGG - chr1_1:73269620-73269639 Msa0042410:five_prime_UTR 45.0%
TGATGTACCTGCAAACACTC+CGG - chr1_1:73269689-73269708 Msa0042410:five_prime_UTR 45.0%
CATACCCTCAATCACATCTC+CGG + chr1_1:73269711-73269730 None:intergenic 45.0%
! GGAGATGTGATTGAGGGTAT+GGG - chr1_1:73269710-73269729 Msa0042410:five_prime_UTR 45.0%
! GAGATGTGATTGAGGGTATG+GGG - chr1_1:73269711-73269730 Msa0042410:five_prime_UTR 45.0%
GCATTTATAGGATGGCGACT+AGG - chr1_1:73269780-73269799 Msa0042410:five_prime_UTR 45.0%
!!! TATTATTTTTTTTTTTTTGA+AGG - chr1_1:73268487-73268506 Msa0042410:intron 5.0%
AGGCCTCATTACACCTGGAA+AGG - chr1_1:73266179-73266198 Msa0042410:intron 50.0%
GAGCCAACAAGTGGTAACAC+CGG - chr1_1:73266601-73266620 Msa0042410:intron 50.0%
!! ATGCCGGTGTTACCACTTGT+TGG + chr1_1:73266607-73266626 None:intergenic 50.0%
ACAAGTGGTAACACCGGCAT+AGG - chr1_1:73266607-73266626 Msa0042410:intron 50.0%
TGGTAACACCGGCATAGGAT+TGG - chr1_1:73266612-73266631 Msa0042410:intron 50.0%
TATCGACGCCAATCCTATGC+CGG + chr1_1:73266623-73266642 None:intergenic 50.0%
GACCCTGCCAAAGGAATTGA+TGG - chr1_1:73266745-73266764 Msa0042410:intron 50.0%
TTTCCAAATCTCAGGGCCAG+TGG + chr1_1:73266951-73266970 None:intergenic 50.0%
!! TGGAGGGAGAGTTGATGCTT+TGG - chr1_1:73266976-73266995 Msa0042410:intron 50.0%
GATGCTTTGGTTGCAGGGAT+AGG - chr1_1:73266989-73267008 Msa0042410:intron 50.0%
TTGGTTGCAGGGATAGGAAC+TGG - chr1_1:73266995-73267014 Msa0042410:intron 50.0%
TGGTTGCAGGGATAGGAACT+GGG - chr1_1:73266996-73267015 Msa0042410:intron 50.0%
GGGGAACAGTAACAGGTGTT+GGG - chr1_1:73267017-73267036 Msa0042410:CDS 50.0%
!! AGGTGTTGGGAAGTTCCTCA+AGG - chr1_1:73267030-73267049 Msa0042410:CDS 50.0%
! GCTTTTCCCCTCTAGGTGTA+TGG - chr1_1:73267133-73267152 Msa0042410:intron 50.0%
! GTTCTGAATGGAGGAAAGCC+AGG - chr1_1:73267178-73267197 Msa0042410:intron 50.0%
!!! TCTGCAGGTGTTTTGGCATC+TGG - chr1_1:73267701-73267720 Msa0042410:intron 50.0%
TTTGCTACGGGGTTACAGTG+GGG + chr1_1:73268702-73268721 None:intergenic 50.0%
! CTTTTGCTACGGGGTTACAG+TGG + chr1_1:73268704-73268723 None:intergenic 50.0%
! TCTGAGGAGCTTTTGCTACG+GGG + chr1_1:73268713-73268732 None:intergenic 50.0%
GGAACGTGATTATAGGGGGA+AGG + chr1_1:73268817-73268836 None:intergenic 50.0%
ATGGGCTTGACAGCGAAGTT+AGG + chr1_1:73268873-73268892 None:intergenic 50.0%
TCGCTGTCAAGCCCATTTGT+TGG - chr1_1:73268877-73268896 Msa0042410:CDS 50.0%
CGCTGTCAAGCCCATTTGTT+GGG - chr1_1:73268878-73268897 Msa0042410:CDS 50.0%
! CAAGCCCATTTGTTGGGCTT+AGG - chr1_1:73268884-73268903 Msa0042410:CDS 50.0%
AGGGCCTAAGCCCAACAAAT+GGG + chr1_1:73268891-73268910 None:intergenic 50.0%
TAGGGCCTAAGCCCAACAAA+TGG + chr1_1:73268892-73268911 None:intergenic 50.0%
GGGAAGAGACCAGAAAATGC+AGG - chr1_1:73269032-73269051 Msa0042410:CDS 50.0%
GTCTCTCCAGCTGTCAATCT+AGG + chr1_1:73269629-73269648 None:intergenic 50.0%
GATTGTGGCAGCTCCATAGA+GGG - chr1_1:73269664-73269683 Msa0042410:five_prime_UTR 50.0%
CAGGTACATCACTCCCTCTA+TGG + chr1_1:73269680-73269699 None:intergenic 50.0%
ACACTCCGGAGATGTGATTG+AGG - chr1_1:73269703-73269722 Msa0042410:five_prime_UTR 50.0%
CACTCCGGAGATGTGATTGA+GGG - chr1_1:73269704-73269723 Msa0042410:five_prime_UTR 50.0%
CGGAGATGTGATTGAGGGTA+TGG - chr1_1:73269709-73269728 Msa0042410:five_prime_UTR 50.0%
ATGGCGACTAGGCTTTCCTT+AGG - chr1_1:73269791-73269810 Msa0042410:five_prime_UTR 50.0%
TGGCGACTAGGCTTTCCTTA+GGG - chr1_1:73269792-73269811 Msa0042410:five_prime_UTR 50.0%
!! TGGCGTCGATAGCAGCAATG+AGG - chr1_1:73266632-73266651 Msa0042410:intron 55.0%
!! GGCGTCGATAGCAGCAATGA+GGG - chr1_1:73266633-73266652 Msa0042410:intron 55.0%
! GCGTCGATAGCAGCAATGAG+GGG - chr1_1:73266634-73266653 Msa0042410:intron 55.0%
AGACCACTGGCCCTGAGATT+TGG - chr1_1:73266945-73266964 Msa0042410:intron 55.0%
GGTTGCAGGGATAGGAACTG+GGG - chr1_1:73266997-73267016 Msa0042410:intron 55.0%
GTTGCAGGGATAGGAACTGG+GGG - chr1_1:73266998-73267017 Msa0042410:intron 55.0%
GGAACTGGGGGAACAGTAAC+AGG - chr1_1:73267010-73267029 Msa0042410:CDS 55.0%
GGGGGAACAGTAACAGGTGT+TGG - chr1_1:73267016-73267035 Msa0042410:CDS 55.0%
!! CAGCACCGATCCCTTGGATT+AGG + chr1_1:73267973-73267992 None:intergenic 55.0%
CTAATCCAAGGGATCGGTGC+TGG - chr1_1:73267971-73267990 Msa0042410:intron 55.0%
GGATTGTGGCAGCTCCATAG+AGG - chr1_1:73269663-73269682 Msa0042410:five_prime_UTR 55.0%
! CACATCTCCGGAGTGTTTGC+AGG + chr1_1:73269699-73269718 None:intergenic 55.0%
!! TGGTGTCGTTCCCCCTATCC+TGG - chr1_1:73267991-73268010 Msa0042410:CDS 60.0%
ACTGCGAGCTTTCGGAGCCG+AGG - chr1_1:73266711-73266730 Msa0042410:intron 65.0%
!! CGACACCAGCACCGATCCCT+TGG + chr1_1:73267979-73267998 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73265228 73269822 73265228 ID=Msa0042410;Name=Msa0042410
chr1_1 mRNA 73265228 73269822 73265228 ID=Msa0042410-mRNA-1;Parent=Msa0042410;Name=Msa0042410-mRNA-1;_AED=0.31;_eAED=0.31;_QI=382|1|1|1|0.7|0.72|11|519|323
chr1_1 exon 73265228 73265836 73265228 ID=Msa0042410-mRNA-1:exon:24487;Parent=Msa0042410-mRNA-1
chr1_1 exon 73265983 73266063 73265983 ID=Msa0042410-mRNA-1:exon:24486;Parent=Msa0042410-mRNA-1
chr1_1 exon 73266654 73266713 73266654 ID=Msa0042410-mRNA-1:exon:24485;Parent=Msa0042410-mRNA-1
chr1_1 exon 73267008 73267087 73267008 ID=Msa0042410-mRNA-1:exon:24484;Parent=Msa0042410-mRNA-1
chr1_1 exon 73267851 73267902 73267851 ID=Msa0042410-mRNA-1:exon:24483;Parent=Msa0042410-mRNA-1
chr1_1 exon 73267978 73268115 73267978 ID=Msa0042410-mRNA-1:exon:24482;Parent=Msa0042410-mRNA-1
chr1_1 exon 73268198 73268461 73268198 ID=Msa0042410-mRNA-1:exon:24481;Parent=Msa0042410-mRNA-1
chr1_1 exon 73268850 73268907 73268850 ID=Msa0042410-mRNA-1:exon:24480;Parent=Msa0042410-mRNA-1
chr1_1 exon 73269019 73269128 73269019 ID=Msa0042410-mRNA-1:exon:24479;Parent=Msa0042410-mRNA-1
chr1_1 exon 73269293 73269359 73269293 ID=Msa0042410-mRNA-1:exon:24478;Parent=Msa0042410-mRNA-1
chr1_1 exon 73269469 73269822 73269469 ID=Msa0042410-mRNA-1:exon:24477;Parent=Msa0042410-mRNA-1
chr1_1 five_prime_UTR 73269469 73269822 73269469 ID=Msa0042410-mRNA-1:five_prime_utr;Parent=Msa0042410-mRNA-1
chr1_1 five_prime_UTR 73269332 73269359 73269332 ID=Msa0042410-mRNA-1:five_prime_utr;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73269293 73269331 73269293 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73269019 73269128 73269019 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73268850 73268907 73268850 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73268198 73268461 73268198 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73267978 73268115 73267978 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73267851 73267902 73267851 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73267008 73267087 73267008 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73266654 73266713 73266654 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73265983 73266063 73265983 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 CDS 73265747 73265836 73265747 ID=Msa0042410-mRNA-1:cds;Parent=Msa0042410-mRNA-1
chr1_1 three_prime_UTR 73265228 73265746 73265228 ID=Msa0042410-mRNA-1:three_prime_utr;Parent=Msa0042410-mRNA-1
Gene Sequence

>Msa0042410

ATGGACCAACACTTTGCAATCAAGAAGGATGTAACTGAATTAATAGGAAACACACCATTGGTATATTTAAACAACATTACAGAAGGGTGTGTAGCTCGTATTGCTGCTAAGCTAGAATACTTGCAATCCTGCTGCAGTGTTAAAGATAGGATATCGTTGAGCATGATTGAAGATGCCGAGAGTAAAGGCCTCATTACACCTGGAAAGACTGTTCTTGTTGAGCCAACAAGTGGTAACACCGGCATAGGATTGGCGTCGATAGCAGCAATGAGGGGCTATAAACTTTTAGTGACTATGCCAGCTTATGTGAGTCTTGAAAGAAAAATTATACTGCGAGCTTTCGGAGCCGAGGTATATTTGACAGACCCTGCCAAAGGAATTGATGGTGTTTTTCAGAAAGCAGACGAGCTATTAGCGAAGACGCCTAATAGTTATATGCTCAATCAGTTTGAAAACTCTGCCAATCCAAAGATTCATTACGAGACCACTGGCCCTGAGATTTGGAAAGACTCTGGAGGGAGAGTTGATGCTTTGGTTGCAGGGATAGGAACTGGGGGAACAGTAACAGGTGTTGGGAAGTTCCTCAAGGAGAAAAACCCAGAGATCAAGGTGTATGGTGTAGAACCATCTGAAAGTGCAGTTCTGAATGGAGGAAAGCCAGGCAAACACCTAATCCAAGGGATCGGTGCTGGTGTCGTTCCCCCTATCCTGGAAGTTGATCTACTAGATGAAGTTATTCAGGTTTCAAGTGAAGAAGCTATAAAAACTGCTAAGCTGCTTGCCTTGAAAGAAGGTTTACTGATGGGAATTTCATCAGGTGCTGCAACAGCAGCTGCAATAAAATTAGGGAAGAGACCAGAAAATGCAGGAAAGCTCATTGTTGTGATTTTTCCCAGTTTTGGAGAGCGATACTTGTCTTCACCGCTTTTTGAATCCATCAGGCATGAAGCAGAACAAATGACATTTGACTGA
Protein sequence

>Msa0042410

MDQHFAIKKDVTELIGNTPLVYLNNITEGCVARIAAKLEYLQSCCSVKDRISLSMIEDAESKGLITPGKTVLVEPTSGNTGIGLASIAAMRGYKLLVTMPAYVSLERKIILRAFGAEVYLTDPAKGIDGVFQKADELLAKTPNSYMLNQFENSANPKIHYETTGPEIWKDSGGRVDALVAGIGTGGTVTGVGKFLKEKNPEIKVYGVEPSESAVLNGGKPGKHLIQGIGAGVVPPILEVDLLDEVIQVSSEEAIKTAKLLALKEGLLMGISSGAATAAAIKLGKRPENAGKLIVVIFPSFGERYLSSPLFESIRHEAEQMTFD*