Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079650 | sp|Q43317|CYSK_CITLA | 73.292 | 322 | 86 | 0 | 2 | 323 | 3 | 324 | 9.36e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079650 | G7I7F0 | 95.975 | 323 | 13 | 0 | 1 | 323 | 1 | 323 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0079650 | -0.821983 | 3.020007e-53 | -8.615850e-47 |
| Msa0042410 | Msa0079650 | 0.967286 | 4.552805e-127 | -8.615850e-47 |
| Msa0046820 | Msa0079650 | 0.808141 | 3.583801e-50 | -8.615850e-47 |
| Msa0055590 | Msa0079650 | 0.803994 | 2.671851e-49 | -8.615850e-47 |
| Msa0079650 | Msa0090040 | -0.814871 | 1.235323e-51 | -8.615850e-47 |
| Msa0079650 | Msa0091770 | 0.817080 | 3.970183e-52 | -8.615850e-47 |
| Msa0079650 | Msa0106370 | -0.800672 | 1.291268e-48 | -8.615850e-47 |
| Msa0079650 | Msa0129790 | -0.802744 | 4.851688e-49 | -8.615850e-47 |
| Msa0079650 | Msa0162070 | 0.803912 | 2.780028e-49 | -8.615850e-47 |
| Msa0079650 | Msa0171780 | 0.804981 | 1.664176e-49 | -8.615850e-47 |
| Msa0079650 | Msa0179280 | 0.812310 | 4.520365e-51 | -8.615850e-47 |
| Msa0079650 | Msa0185640 | -0.808369 | 3.204483e-50 | -8.615850e-47 |
| Msa0079650 | Msa0190830 | 0.821792 | 3.344480e-53 | -8.615850e-47 |
| Msa0079650 | Msa0204210 | 0.802698 | 4.959734e-49 | -8.615850e-47 |
| Msa0079650 | Msa0208390 | 0.831972 | 1.232636e-55 | -8.615850e-47 |
| Msa0079650 | Msa0233190 | 0.818253 | 2.158880e-52 | -8.615850e-47 |
| Msa0079650 | Msa0264940 | -0.817888 | 2.611002e-52 | -8.615850e-47 |
| Msa0079650 | Msa0265820 | 0.803787 | 2.950373e-49 | -8.615850e-47 |
| Msa0079650 | Msa0269360 | 0.832268 | 1.041328e-55 | -8.615850e-47 |
| Msa0079650 | Msa0271140 | 0.805357 | 1.387946e-49 | -8.615850e-47 |
| Msa0079650 | Msa0298940 | 0.817489 | 3.211165e-52 | -8.615850e-47 |
| Msa0079650 | Msa0302990 | -0.821551 | 3.801418e-53 | -8.615850e-47 |
| Msa0079650 | Msa0304740 | 0.803902 | 2.793321e-49 | -8.615850e-47 |
| Msa0079650 | Msa0311580 | 0.821909 | 3.142083e-53 | -8.615850e-47 |
| Msa0079650 | Msa0312690 | -0.801649 | 8.148903e-49 | -8.615850e-47 |
| Msa0079650 | Msa0318270 | 0.803801 | 2.931664e-49 | -8.615850e-47 |
| Msa0079650 | Msa0318310 | 0.811461 | 6.922390e-51 | -8.615850e-47 |
| Msa0079650 | Msa0342200 | 0.808510 | 2.989931e-50 | -8.615850e-47 |
| Msa0079650 | Msa0351980 | 0.812921 | 3.324577e-51 | -8.615850e-47 |
| Msa0079650 | Msa0357100 | 0.807901 | 4.029727e-50 | -8.615850e-47 |
| Msa0079650 | Msa0410750 | 0.801815 | 7.536709e-49 | -8.615850e-47 |
| Msa0079650 | Msa0412540 | 0.822788 | 1.963826e-53 | -8.615850e-47 |
| Msa0079650 | Msa0413740 | 0.816708 | 4.811661e-52 | -8.615850e-47 |
| Msa0079650 | Msa0437710 | 0.804817 | 1.800369e-49 | -8.615850e-47 |
| Msa0079650 | Msa0458790 | 0.807939 | 3.956747e-50 | -8.615850e-47 |
| Msa0079650 | Msa0480320 | 0.800838 | 1.194228e-48 | -8.615850e-47 |
| Msa0079650 | Msa0505390 | 0.816950 | 4.246010e-52 | -8.615850e-47 |
| Msa0079650 | Msa0509970 | 0.807107 | 5.940450e-50 | -8.615850e-47 |
| Msa0079650 | Msa0516450 | 0.830833 | 2.350009e-55 | -8.615850e-47 |
| Msa0079650 | Msa0524050 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
| Msa0079650 | Msa0524890 | -0.804434 | 2.164267e-49 | -8.615850e-47 |
| Msa0079650 | Msa0528970 | 0.800089 | 1.697537e-48 | -8.615850e-47 |
| Msa0079650 | Msa0538700 | 0.803434 | 3.492582e-49 | -8.615850e-47 |
| Msa0079650 | Msa0540320 | 0.838122 | 3.468727e-57 | -8.615850e-47 |
| Msa0079650 | Msa0582110 | 0.843086 | 1.739827e-58 | -8.615850e-47 |
| Msa0079650 | Msa0589150 | 0.811372 | 7.234381e-51 | -8.615850e-47 |
| Msa0079650 | Msa0589600 | 0.805026 | 1.628608e-49 | -8.615850e-47 |
| Msa0079650 | Msa0596100 | 0.846157 | 2.590190e-59 | -8.615850e-47 |
| Msa0079650 | Msa0624730 | 0.845738 | 3.367672e-59 | -8.615850e-47 |
| Msa0079650 | Msa0635470 | 0.824939 | 6.149469e-54 | -8.615850e-47 |
| Msa0079650 | Msa0647000 | 0.800569 | 1.354971e-48 | -8.615850e-47 |
| Msa0079650 | Msa0657670 | 0.831184 | 1.927868e-55 | -8.615850e-47 |
| Msa0079650 | Msa0660880 | -0.836515 | 8.945067e-57 | -8.615850e-47 |
| Msa0079650 | Msa0674220 | 0.838567 | 2.664149e-57 | -8.615850e-47 |
| Msa0079650 | Msa0674300 | 0.804794 | 1.820344e-49 | -8.615850e-47 |
| Msa0079650 | Msa0688550 | 0.808071 | 3.707615e-50 | -8.615850e-47 |
| Msa0079650 | Msa0698760 | 0.806359 | 8.548465e-50 | -8.615850e-47 |
| Msa0079650 | Msa0716740 | -0.829501 | 4.969240e-55 | -8.615850e-47 |
| Msa0079650 | Msa0722930 | 0.800118 | 1.674473e-48 | -8.615850e-47 |
| Msa0079650 | Msa0723140 | 0.814893 | 1.221892e-51 | -8.615850e-47 |
| Msa0079650 | Msa0770430 | 0.816883 | 4.394748e-52 | -8.615850e-47 |
| Msa0079650 | Msa0792510 | 0.830221 | 3.317621e-55 | -8.615850e-47 |
| Msa0079650 | Msa0799290 | -0.833432 | 5.352066e-56 | -8.615850e-47 |
| Msa0079650 | Msa0837510 | -0.832813 | 7.628491e-56 | -8.615850e-47 |
| Msa0079650 | Msa0839330 | 0.801593 | 8.367293e-49 | -8.615850e-47 |
| Msa0079650 | Msa0843280 | 0.801829 | 7.484936e-49 | -8.615850e-47 |
| Msa0079650 | Msa0902980 | 0.815578 | 8.603123e-52 | -8.615850e-47 |
| Msa0079650 | Msa0935370 | 0.820154 | 7.970148e-53 | -8.615850e-47 |
| Msa0079650 | Msa0937940 | 0.802071 | 6.676722e-49 | -8.615850e-47 |
| Msa0079650 | Msa0946680 | 0.801688 | 7.999993e-49 | -8.615850e-47 |
| Msa0079650 | Msa0951720 | 0.819087 | 1.396280e-52 | -8.615850e-47 |
| Msa0079650 | Msa0961460 | 0.813597 | 2.361751e-51 | -8.615850e-47 |
| Msa0079650 | Msa0969570 | 0.804478 | 2.118955e-49 | -8.615850e-47 |
| Msa0079650 | Msa0970050 | 0.823121 | 1.642886e-53 | -8.615850e-47 |
| Msa0079650 | Msa0980440 | 0.824232 | 9.023186e-54 | -8.615850e-47 |
| Msa0079650 | Msa0981740 | 0.851543 | 8.286718e-61 | -8.615850e-47 |
| Msa0079650 | Msa1008340 | 0.824547 | 7.608999e-54 | -8.615850e-47 |
| Msa0079650 | Msa1008490 | 0.811365 | 7.261761e-51 | -8.615850e-47 |
| Msa0079650 | Msa1016670 | 0.828290 | 9.761892e-55 | -8.615850e-47 |
| Msa0079650 | Msa1029090 | 0.817127 | 3.874405e-52 | -8.615850e-47 |
| Msa0079650 | Msa1033440 | -0.802398 | 5.718914e-49 | -8.615850e-47 |
| Msa0079650 | Msa1036390 | 0.847824 | 9.054973e-60 | -8.615850e-47 |
| Msa0079650 | Msa1038050 | 0.839467 | 1.557669e-57 | -8.615850e-47 |
| Msa0079650 | Msa1049950 | 0.835925 | 1.263437e-56 | -8.615850e-47 |
| Msa0079650 | Msa1073110 | -0.809035 | 2.308788e-50 | -8.615850e-47 |
| Msa0079650 | Msa1076680 | 0.847522 | 1.096510e-59 | -8.615850e-47 |
| Msa0079650 | Msa1080460 | 0.856914 | 2.331087e-62 | -8.615850e-47 |
| Msa0079650 | Msa1080470 | 0.814282 | 1.668137e-51 | -8.615850e-47 |
| Msa0079650 | Msa1081700 | 0.806837 | 6.776028e-50 | -8.615850e-47 |
| Msa0079650 | Msa1083410 | 0.811321 | 7.423529e-51 | -8.615850e-47 |
| Msa0079650 | Msa1087530 | 0.811333 | 7.377826e-51 | -8.615850e-47 |
| Msa0079650 | Msa1102540 | 0.814690 | 1.355037e-51 | -8.615850e-47 |
| Msa0079650 | Msa1105290 | 0.801462 | 8.901064e-49 | -8.615850e-47 |
| Msa0079650 | Msa1113200 | 0.817908 | 2.583764e-52 | -8.615850e-47 |
| Msa0079650 | Msa1121660 | 0.834269 | 3.304064e-56 | -8.615850e-47 |
| Msa0079650 | Msa1128160 | 0.835025 | 2.133258e-56 | -8.615850e-47 |
| Msa0079650 | Msa1138450 | 0.808125 | 3.611003e-50 | -8.615850e-47 |
| Msa0079650 | Msa1139240 | 0.844027 | 9.746404e-59 | -8.615850e-47 |
| Msa0079650 | Msa1140010 | 0.803235 | 3.840790e-49 | -8.615850e-47 |
| Msa0079650 | Msa1146150 | 0.811521 | 6.715316e-51 | -8.615850e-47 |
| Msa0079650 | Msa1156180 | 0.807163 | 5.779763e-50 | -8.615850e-47 |
| Msa0079650 | Msa1165360 | 0.834075 | 3.695405e-56 | -8.615850e-47 |
| Msa0079650 | Msa1166240 | -0.803425 | 3.507305e-49 | -8.615850e-47 |
| Msa0079650 | Msa1167000 | 0.845334 | 4.334096e-59 | -8.615850e-47 |
| Msa0079650 | Msa1171690 | 0.808934 | 2.425847e-50 | -8.615850e-47 |
| Msa0079650 | Msa1184730 | 0.809154 | 2.177070e-50 | -8.615850e-47 |
| Msa0079650 | Msa1195750 | 0.818872 | 1.562322e-52 | -8.615850e-47 |
| Msa0079650 | Msa1204980 | -0.801273 | 9.733324e-49 | -8.615850e-47 |
| Msa0079650 | Msa1205010 | -0.803595 | 3.233870e-49 | -8.615850e-47 |
| Msa0079650 | Msa1212840 | 0.803169 | 3.963970e-49 | -8.615850e-47 |
| Msa0079650 | Msa1221200 | -0.827677 | 1.370633e-54 | -8.615850e-47 |
| Msa0079650 | Msa1238700 | 0.801686 | 8.009518e-49 | -8.615850e-47 |
| Msa0079650 | Msa1254950 | 0.811407 | 7.111960e-51 | -8.615850e-47 |
| Msa0079650 | Msa1256540 | -0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0079650 | Msa1261470 | 0.803036 | 4.222108e-49 | -8.615850e-47 |
| Msa0079650 | Msa1295690 | 0.801902 | 7.230107e-49 | -8.615850e-47 |
| Msa0079650 | Msa1296960 | -0.808215 | 3.455522e-50 | -8.615850e-47 |
| Msa0079650 | Msa1304180 | 0.805359 | 1.386511e-49 | -8.615850e-47 |
| Msa0079650 | Msa1310110 | 0.843855 | 1.083669e-58 | -8.615850e-47 |
| Msa0079650 | Msa1326000 | 0.821645 | 3.617027e-53 | -8.615850e-47 |
| Msa0079650 | Msa1329990 | 0.804463 | 2.134132e-49 | -8.615850e-47 |
| Msa0079650 | Msa1335860 | 0.809068 | 2.271810e-50 | -8.615850e-47 |
| Msa0079650 | Msa1358870 | -0.814354 | 1.608313e-51 | -8.615850e-47 |
| Msa0079650 | Msa1371080 | -0.828754 | 7.540004e-55 | -8.615850e-47 |
| Msa0079650 | Msa1373950 | 0.838809 | 2.305996e-57 | -8.615850e-47 |
| Msa0079650 | Msa1385900 | 0.819016 | 1.449375e-52 | -8.615850e-47 |
| Msa0079650 | Msa1395230 | -0.816666 | 4.916739e-52 | -8.615850e-47 |
| Msa0079650 | Msa1438270 | 0.841132 | 5.719027e-58 | -8.615850e-47 |
| Msa0079650 | Msa1456810 | 0.835195 | 1.932679e-56 | -8.615850e-47 |
| Msa0079650 | Msa1460310 | -0.821690 | 3.531223e-53 | -8.615850e-47 |
| Msa0079650 | Msa1460410 | 0.882547 | 9.508328e-71 | -8.615850e-47 |
| Msa0079650 | Msa1464560 | 0.811958 | 5.396654e-51 | -8.615850e-47 |
| Msa0079650 | Msa1465900 | 0.818136 | 2.294727e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079650 | MtrunA17_Chr1g0191051 | 95.975 | 323 | 13 | 0 | 1 | 323 | 1 | 323 | 0.0 | 603 |
| Msa0079650 | MtrunA17_Chr1g0191061 | 77.437 | 359 | 35 | 2 | 11 | 323 | 25 | 383 | 0.0 | 513 |
| Msa0079650 | MtrunA17_Chr1g0191041 | 75.079 | 317 | 79 | 0 | 7 | 323 | 8 | 324 | 6.52e-159 | 447 |
| Msa0079650 | MtrunA17_Chr5g0394491 | 73.209 | 321 | 86 | 0 | 3 | 323 | 4 | 324 | 8.08e-158 | 444 |
| Msa0079650 | MtrunA17_Chr1g0205381 | 72.586 | 321 | 88 | 0 | 3 | 323 | 4 | 324 | 1.37e-155 | 438 |
| Msa0079650 | MtrunA17_Chr4g0045721 | 63.323 | 319 | 117 | 0 | 2 | 320 | 42 | 360 | 3.45e-153 | 434 |
| Msa0079650 | MtrunA17_Chr1g0191071 | 81.041 | 269 | 46 | 1 | 55 | 323 | 1 | 264 | 4.83e-143 | 404 |
| Msa0079650 | MtrunA17_Chr4g0045771 | 62.102 | 314 | 110 | 2 | 7 | 320 | 47 | 351 | 8.28e-143 | 407 |
| Msa0079650 | MtrunA17_Chr4g0045781 | 66.242 | 314 | 106 | 0 | 7 | 320 | 66 | 379 | 4.87e-141 | 404 |
| Msa0079650 | MtrunA17_Chr7g0248021 | 62.739 | 314 | 117 | 0 | 7 | 320 | 61 | 374 | 7.43e-141 | 403 |
| Msa0079650 | MtrunA17_Chr7g0254401 | 60.191 | 314 | 115 | 1 | 7 | 320 | 65 | 368 | 2.46e-125 | 363 |
| Msa0079650 | MtrunA17_Chr5g0446431 | 30.312 | 353 | 187 | 5 | 11 | 306 | 48 | 398 | 1.34e-44 | 157 |
| Msa0079650 | MtrunA17_Chr2g0310201 | 40.650 | 123 | 46 | 4 | 86 | 181 | 12 | 134 | 4.81e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079650 | AT4G14880.5 | 71.293 | 317 | 91 | 0 | 7 | 323 | 5 | 321 | 7.76e-157 | 442 |
| Msa0079650 | AT4G14880.3 | 71.293 | 317 | 91 | 0 | 7 | 323 | 5 | 321 | 7.76e-157 | 442 |
| Msa0079650 | AT4G14880.4 | 71.293 | 317 | 91 | 0 | 7 | 323 | 5 | 321 | 7.76e-157 | 442 |
| Msa0079650 | AT4G14880.2 | 71.293 | 317 | 91 | 0 | 7 | 323 | 5 | 321 | 7.76e-157 | 442 |
| Msa0079650 | AT4G14880.1 | 71.293 | 317 | 91 | 0 | 7 | 323 | 5 | 321 | 7.76e-157 | 442 |
| Msa0079650 | AT3G04940.1 | 69.592 | 319 | 97 | 0 | 2 | 320 | 3 | 321 | 8.17e-155 | 436 |
| Msa0079650 | AT3G04940.2 | 69.592 | 319 | 97 | 0 | 2 | 320 | 3 | 321 | 8.17e-155 | 436 |
| Msa0079650 | AT2G43750.1 | 70.701 | 314 | 92 | 0 | 7 | 320 | 75 | 388 | 2.67e-152 | 433 |
| Msa0079650 | AT2G43750.2 | 70.701 | 314 | 92 | 0 | 7 | 320 | 75 | 388 | 2.67e-152 | 433 |
| Msa0079650 | AT3G59760.3 | 69.745 | 314 | 95 | 0 | 7 | 320 | 113 | 426 | 2.02e-151 | 432 |
| Msa0079650 | AT3G59760.1 | 69.745 | 314 | 95 | 0 | 7 | 320 | 113 | 426 | 2.66e-151 | 432 |
| Msa0079650 | AT5G28020.2 | 66.873 | 323 | 107 | 0 | 1 | 323 | 1 | 323 | 1.57e-145 | 413 |
| Msa0079650 | AT5G28020.4 | 66.873 | 323 | 107 | 0 | 1 | 323 | 1 | 323 | 1.57e-145 | 413 |
| Msa0079650 | AT5G28020.1 | 66.873 | 323 | 107 | 0 | 1 | 323 | 1 | 323 | 1.57e-145 | 413 |
| Msa0079650 | AT5G28020.3 | 66.873 | 323 | 107 | 0 | 1 | 323 | 1 | 323 | 1.57e-145 | 413 |
| Msa0079650 | AT5G28020.6 | 66.873 | 323 | 107 | 0 | 1 | 323 | 1 | 323 | 1.57e-145 | 413 |
| Msa0079650 | AT5G28030.1 | 68.111 | 323 | 103 | 0 | 1 | 323 | 1 | 323 | 1.41e-144 | 410 |
| Msa0079650 | AT5G28030.4 | 68.111 | 323 | 103 | 0 | 1 | 323 | 1 | 323 | 1.41e-144 | 410 |
| Msa0079650 | AT5G28030.5 | 68.111 | 323 | 103 | 0 | 1 | 323 | 1 | 323 | 1.41e-144 | 410 |
| Msa0079650 | AT5G28030.2 | 68.111 | 323 | 103 | 0 | 1 | 323 | 1 | 323 | 1.41e-144 | 410 |
| Msa0079650 | AT3G61440.1 | 61.342 | 313 | 121 | 0 | 8 | 320 | 50 | 362 | 1.05e-135 | 390 |
| Msa0079650 | AT3G59760.2 | 69.204 | 289 | 89 | 0 | 7 | 295 | 113 | 401 | 8.77e-134 | 387 |
| Msa0079650 | AT3G22460.1 | 67.286 | 269 | 68 | 1 | 55 | 323 | 1 | 249 | 9.53e-124 | 355 |
| Msa0079650 | AT3G03630.1 | 59.327 | 327 | 117 | 2 | 2 | 322 | 88 | 404 | 5.66e-123 | 359 |
| Msa0079650 | AT3G61440.2 | 62.782 | 266 | 99 | 0 | 55 | 320 | 1 | 266 | 8.41e-115 | 333 |
| Msa0079650 | AT5G28030.3 | 67.600 | 250 | 81 | 0 | 1 | 250 | 1 | 250 | 3.67e-111 | 323 |
| Msa0079650 | AT3G61440.4 | 58.935 | 263 | 108 | 0 | 8 | 270 | 50 | 312 | 4.02e-109 | 321 |
| Msa0079650 | AT3G61440.3 | 61.667 | 240 | 92 | 0 | 81 | 320 | 2 | 241 | 1.39e-100 | 296 |
| Msa0079650 | AT5G28020.5 | 65.823 | 237 | 81 | 0 | 87 | 323 | 1 | 237 | 4.04e-96 | 284 |
| Msa0079650 | AT3G22460.2 | 71.271 | 181 | 52 | 0 | 7 | 187 | 8 | 188 | 6.59e-93 | 274 |
| Msa0079650 | AT1G55880.1 | 28.729 | 362 | 198 | 7 | 3 | 306 | 36 | 395 | 9.06e-41 | 147 |
| Msa0079650 | AT1G55880.2 | 31.765 | 255 | 132 | 5 | 3 | 216 | 36 | 289 | 2.04e-35 | 131 |
Find 99 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCAGCTGCAATAAAATT+AGG | 0.184994 | 1_2:+57588286 | Msa0079650:CDS |
| CAATTCATTGTGAAGTTAAT+AGG | 0.233028 | 1_2:+57585168 | Msa0079650:intron |
| TCTACTAGATGAAGTTATTC+AGG | 0.259370 | 1_2:+57587298 | Msa0079650:CDS |
| TTGACATTGACTTGAGATTC+TGG | 0.270315 | 1_2:+57584504 | Msa0079650:five_prime_UTR |
| CAAGTATCGCTCTCCAAAAC+TGG | 0.276395 | 1_2:-57588499 | None:intergenic |
| AACATGGTTATGGTAGCTTT+TGG | 0.277120 | 1_2:+57584650 | Msa0079650:five_prime_UTR |
| TGCCTTGAAAGAAGGTTTAC+TGG | 0.283658 | 1_2:+57587654 | Msa0079650:CDS |
| ATGACTATATTTAAAGTAAC+TGG | 0.299376 | 1_2:-57588744 | None:intergenic |
| TTGGTTGCAGGGATAGGAAC+TGG | 0.301174 | 1_2:+57586272 | Msa0079650:CDS |
| ATTTGACTAATTACCTTTCC+AGG | 0.303581 | 1_2:-57585453 | None:intergenic |
| AGAGTTGATGCTTTGGTTGC+AGG | 0.314791 | 1_2:+57586260 | Msa0079650:CDS |
| AGACCACTGGCCCTGAGATT+TGG | 0.324065 | 1_2:+57586222 | Msa0079650:CDS |
| ACTTCACTTAATCACAGTTT+AGG | 0.343364 | 1_2:-57584759 | None:intergenic |
| CTTACTATACCAAGCTGAAT+AGG | 0.354323 | 1_2:-57584784 | None:intergenic |
| TGGAGGGAGAGTTGATGCTT+TGG | 0.358657 | 1_2:+57586253 | Msa0079650:CDS |
| ACTATTCATACCTTGATCTC+TGG | 0.360280 | 1_2:-57586338 | None:intergenic |
| CCAGAGTCTTTCCAAATCTC+AGG | 0.373679 | 1_2:-57586233 | None:intergenic |
| CTTTGTTGAATAATAGCGTT+TGG | 0.382842 | 1_2:+57588675 | Msa0079650:three_prime_UTR |
| CATCTAGTAGATCAACTTCC+AGG | 0.383555 | 1_2:-57587286 | None:intergenic |
| AAAATTATACTGCGAGCTTT+CGG | 0.393798 | 1_2:+57585980 | Msa0079650:CDS |
| TGATTGAGCATATAACTATT+AGG | 0.407097 | 1_2:-57586082 | None:intergenic |
| TACCAGTAAACCTTCTTTCA+AGG | 0.409533 | 1_2:-57587656 | None:intergenic |
| ATGCCGGTGTTACCACTTGT+TGG | 0.412993 | 1_2:-57585881 | None:intergenic |
| TTGCAGATGGGAATTTCATC+AGG | 0.416958 | 1_2:+57588256 | Msa0079650:intron |
| CAGCAGCTGCAATAAAATTA+GGG | 0.431631 | 1_2:+57588287 | Msa0079650:CDS |
| CAGCACCGATCCCTTGGATT+AGG | 0.432171 | 1_2:-57587247 | None:intergenic |
| TTATCCACAAAACATGGTTA+TGG | 0.434803 | 1_2:+57584640 | Msa0079650:five_prime_UTR |
| CTATTCATACCTTGATCTCT+GGG | 0.435238 | 1_2:-57586337 | None:intergenic |
| CCTGCTGCAGTGTTAAAGAT+AGG | 0.441852 | 1_2:+57585271 | Msa0079650:CDS |
| CTTTCAAGACTCACATAAGC+TGG | 0.442324 | 1_2:-57585956 | None:intergenic |
| CGACACCAGCACCGATCCCT+TGG | 0.442965 | 1_2:-57587253 | None:intergenic |
| TTGTTCAGCTTCATGCCTGA+TGG | 0.443006 | 1_2:-57588541 | None:intergenic |
| GACCCTGCCAAAGGAATTGA+TGG | 0.448526 | 1_2:+57586022 | Msa0079650:CDS |
| GAGTTGATGCTTTGGTTGCA+GGG | 0.455243 | 1_2:+57586261 | Msa0079650:CDS |
| ACACCATCAATTCCTTTGGC+AGG | 0.457831 | 1_2:-57586025 | None:intergenic |
| AACATGACCCATAGAAGAAC+GGG | 0.462414 | 1_2:+57584457 | Msa0079650:intron |
| GTAGATCAACTTCCAGGATA+GGG | 0.464520 | 1_2:-57587280 | None:intergenic |
| TGTAAATAACACCTTTGGAT+TGG | 0.472231 | 1_2:-57586119 | None:intergenic |
| CCTATCTTTAACACTGCAGC+AGG | 0.474156 | 1_2:-57585271 | None:intergenic |
| AAGCTGCTTGCCTTGAAAGA+AGG | 0.474497 | 1_2:+57587646 | Msa0079650:CDS |
| TGGTTGCAGGGATAGGAACT+GGG | 0.484341 | 1_2:+57586273 | Msa0079650:CDS |
| CAAAAGGTAAGATATTCAAT+TGG | 0.485689 | 1_2:+57584253 | None:intergenic |
| GGGGAACAGTAACAGGTGTT+GGG | 0.494810 | 1_2:+57586294 | Msa0079650:CDS |
| CCTTCTTGATTGCAAAGTGT+TGG | 0.496354 | 1_2:-57584992 | None:intergenic |
| GATGCTTTGGTTGCAGGGAT+AGG | 0.501960 | 1_2:+57586266 | Msa0079650:CDS |
| AGTAGATCAACTTCCAGGAT+AGG | 0.502056 | 1_2:-57587281 | None:intergenic |
| CACAATTGTGACAGTAGAGC+TGG | 0.505735 | 1_2:-57588616 | None:intergenic |
| TCTGAAAGTGCAGTTCTGAA+TGG | 0.514085 | 1_2:+57586443 | Msa0079650:CDS |
| ATTGAAGATGCCGAGAGTAA+AGG | 0.514802 | 1_2:+57585420 | Msa0079650:CDS |
| CTAATCCAAGGGATCGGTGC+TGG | 0.516701 | 1_2:+57587248 | Msa0079650:CDS |
| TTACCTTTCCAGGTGTAATG+AGG | 0.523442 | 1_2:-57585443 | None:intergenic |
| TTCAGAACTGCACTTTCAGA+TGG | 0.538348 | 1_2:-57586440 | None:intergenic |
| CCTGAGATTTGGAAAGACTC+TGG | 0.544001 | 1_2:+57586233 | Msa0079650:CDS |
| ACAAGTGGTAACACCGGCAT+AGG | 0.544602 | 1_2:+57585884 | Msa0079650:CDS |
| GTGAAGTCTCCTATTCAGCT+TGG | 0.545114 | 1_2:+57584775 | Msa0079650:five_prime_UTR |
| GTTCTGAATGGAGGAAAGCC+AGG | 0.546295 | 1_2:+57586455 | Msa0079650:CDS |
| TAGATTCATTACGAGACCAC+TGG | 0.548191 | 1_2:+57586209 | Msa0079650:intron |
| TGTAATGAGGCCTTTACTCT+CGG | 0.551658 | 1_2:-57585430 | None:intergenic |
| TATTTAAGCAACATTACAGA+AGG | 0.553837 | 1_2:+57585207 | Msa0079650:CDS |
| CACCATCAATTCCTTTGGCA+GGG | 0.555618 | 1_2:-57586024 | None:intergenic |
| GGCGTCGATAGCAGCAATGA+GGG | 0.558283 | 1_2:+57585910 | Msa0079650:CDS |
| TGGTAACACCGGCATAGGAT+TGG | 0.559661 | 1_2:+57585889 | Msa0079650:CDS |
| AGGCCTCATTACACCTGGAA+AGG | 0.563587 | 1_2:+57585440 | Msa0079650:CDS |
| CAAATGACATTTGACTGAAG+TGG | 0.564571 | 1_2:+57588561 | Msa0079650:exon |
| ATTTAAAGTTTATGTCTGCA+TGG | 0.568287 | 1_2:-57588718 | None:intergenic |
| GGGAAGAGACCAGAAAATGC+AGG | 0.570015 | 1_2:+57588307 | Msa0079650:CDS |
| AAAGGCAAACACCTAATCCA+AGG | 0.576831 | 1_2:+57587236 | Msa0079650:intron |
| TAGATCAACTTCCAGGATAG+GGG | 0.577360 | 1_2:-57587279 | None:intergenic |
| AGTAAAGGCCTCATTACACC+TGG | 0.589255 | 1_2:+57585435 | Msa0079650:CDS |
| GTTCTTGTTGAGCCAACAAG+TGG | 0.593333 | 1_2:+57585869 | Msa0079650:CDS |
| TTTCCAAATCTCAGGGCCAG+TGG | 0.596982 | 1_2:-57586225 | None:intergenic |
| TATCGACGCCAATCCTATGC+CGG | 0.597404 | 1_2:-57585897 | None:intergenic |
| GCTTTCTTCATCAGATAACA+TGG | 0.598151 | 1_2:+57584968 | Msa0079650:exon |
| AGATTTGGAAAGACTCTGGA+GGG | 0.598831 | 1_2:+57586237 | Msa0079650:CDS |
| CAGAGTCTTTCCAAATCTCA+GGG | 0.601201 | 1_2:-57586232 | None:intergenic |
| GTTAATAGGAAACACACCAT+TGG | 0.604534 | 1_2:+57585182 | Msa0079650:intron |
| AAGTATCGCTCTCCAAAACT+GGG | 0.605328 | 1_2:-57588498 | None:intergenic |
| CCAACACTTTGCAATCAAGA+AGG | 0.607054 | 1_2:+57584992 | Msa0079650:CDS |
| TGAAAACTCTGCCAATCCAA+AGG | 0.611620 | 1_2:+57586108 | Msa0079650:CDS |
| GAGATTTGGAAAGACTCTGG+AGG | 0.616942 | 1_2:+57586236 | Msa0079650:CDS |
| ACTGCGAGCTTTCGGAGCCG+AGG | 0.618497 | 1_2:+57585988 | Msa0079650:CDS |
| TGGCGTCGATAGCAGCAATG+AGG | 0.618801 | 1_2:+57585909 | Msa0079650:CDS |
| TAACATGACCCATAGAAGAA+CGG | 0.624832 | 1_2:+57584456 | Msa0079650:intron |
| AAACACCTAATCCAAGGGAT+CGG | 0.628864 | 1_2:+57587242 | Msa0079650:CDS |
| TAACATTTATCCACAAAACA+TGG | 0.630555 | 1_2:+57584634 | Msa0079650:five_prime_UTR |
| ATTGAACTTGATGAATCGAG+AGG | 0.635155 | 1_2:-57584535 | None:intergenic |
| AGATCAACTTCCAGGATAGG+GGG | 0.642892 | 1_2:-57587278 | None:intergenic |
| AAGGCAAACACCTAATCCAA+GGG | 0.643306 | 1_2:+57587237 | Msa0079650:intron |
| AGGGTCTGTCAAATATACCT+CGG | 0.651115 | 1_2:-57586005 | None:intergenic |
| ATTTAAGCAACATTACAGAA+GGG | 0.654817 | 1_2:+57585208 | Msa0079650:CDS |
| TATTTGACAGACCCTGCCAA+AGG | 0.662474 | 1_2:+57586013 | Msa0079650:CDS |
| AGGTGTTGGGAAGTTCCTCA+AGG | 0.665059 | 1_2:+57586307 | Msa0079650:CDS |
| GAAAGTGCAGTTCTGAATGG+AGG | 0.666727 | 1_2:+57586446 | Msa0079650:CDS |
| GGTTGCAGGGATAGGAACTG+GGG | 0.673121 | 1_2:+57586274 | Msa0079650:CDS |
| GAGCCAACAAGTGGTAACAC+CGG | 0.677684 | 1_2:+57585878 | Msa0079650:CDS |
| ATGTTGCTTAAATATACCAA+TGG | 0.683716 | 1_2:-57585198 | None:intergenic |
| TCTTAAAATATATACACACA+CGG | 0.699160 | 1_2:+57584696 | Msa0079650:five_prime_UTR |
| GCGTCGATAGCAGCAATGAG+GGG | 0.705710 | 1_2:+57585911 | Msa0079650:CDS |
| GTTGCAGGGATAGGAACTGG+GGG | 0.729118 | 1_2:+57586275 | Msa0079650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAGTAATTTTCTTAAT+AGG | + | chr1_2:57584592-57584611 | Msa0079650:five_prime_UTR | 10.0% |
| !! | AACATTATAAGTAATAACAT+TGG | - | chr1_2:57585743-57585762 | None:intergenic | 15.0% |
| !! | TATATATTAACAAATTATGC+AGG | - | chr1_2:57587437-57587456 | None:intergenic | 15.0% |
| !! | TATGTTGAATAAACTTATTA+AGG | - | chr1_2:57588359-57588378 | None:intergenic | 15.0% |
| !! | ATTGGTTAATTAATAGTAGA+AGG | + | chr1_2:57584271-57584290 | Msa0079650:intron | 20.0% |
| !!! | TTCATCAAGTTCAATTTTAT+CGG | + | chr1_2:57584543-57584562 | Msa0079650:five_prime_UTR | 20.0% |
| !!! | AGTAATTTTCTTAATAGGAT+TGG | + | chr1_2:57584597-57584616 | Msa0079650:five_prime_UTR | 20.0% |
| !! | TCTTAAAATATATACACACA+CGG | + | chr1_2:57584696-57584715 | Msa0079650:five_prime_UTR | 20.0% |
| !! | AACAATATGAACAATAGTAT+AGG | - | chr1_2:57585794-57585813 | None:intergenic | 20.0% |
| !!! | AGTGTAATCTTTTTAAACAA+TGG | + | chr1_2:57585833-57585852 | Msa0079650:intron | 20.0% |
| !!! | ACAGTTCATATTTTCTAATT+TGG | + | chr1_2:57586139-57586158 | Msa0079650:intron | 20.0% |
| !!! | TATTTTCTAATTTGGTTGTT+TGG | + | chr1_2:57586147-57586166 | Msa0079650:intron | 20.0% |
| !! | AAAACAACGACAAAATTAAT+TGG | - | chr1_2:57586190-57586209 | None:intergenic | 20.0% |
| !! | TAGAATTGTTCTATCAAAAT+TGG | + | chr1_2:57586916-57586935 | Msa0079650:intron | 20.0% |
| !! | TATTTGATTCTTCTAATTTC+TGG | + | chr1_2:57587516-57587535 | Msa0079650:intron | 20.0% |
| !!! | ATGACTATATTTAAAGTAAC+TGG | - | chr1_2:57588747-57588766 | None:intergenic | 20.0% |
| !! | TCATCAAGTTCAATTTTATC+GGG | + | chr1_2:57584544-57584563 | Msa0079650:five_prime_UTR | 25.0% |
| ! | TAACATTTATCCACAAAACA+TGG | + | chr1_2:57584634-57584653 | Msa0079650:five_prime_UTR | 25.0% |
| !!! | GTGTATATATTTTAAGAGAC+TGG | - | chr1_2:57584693-57584712 | None:intergenic | 25.0% |
| ! | CAATTCATTGTGAAGTTAAT+AGG | + | chr1_2:57585168-57585187 | Msa0079650:intron | 25.0% |
| !! | ATGTTGCTTAAATATACCAA+TGG | - | chr1_2:57585201-57585220 | None:intergenic | 25.0% |
| ! | TATTTAAGCAACATTACAGA+AGG | + | chr1_2:57585207-57585226 | Msa0079650:CDS | 25.0% |
| ! | ATTTAAGCAACATTACAGAA+GGG | + | chr1_2:57585208-57585227 | Msa0079650:CDS | 25.0% |
| !!! | TAATATTGTTTTTCTCACTC+AGG | + | chr1_2:57585382-57585401 | Msa0079650:intron | 25.0% |
| !! | AGATATCTAAGTTTTCAAAC+TGG | + | chr1_2:57585477-57585496 | Msa0079650:intron | 25.0% |
| !! | GATATCTAAGTTTTCAAACT+GGG | + | chr1_2:57585478-57585497 | Msa0079650:intron | 25.0% |
| !! | CAATTTTTGAATGATGAGTT+AGG | - | chr1_2:57585558-57585577 | None:intergenic | 25.0% |
| ! | CTAACTCATCATTCAAAAAT+TGG | + | chr1_2:57585556-57585575 | Msa0079650:intron | 25.0% |
| !!! | CTTTATGAACTCTTTTAAGT+CGG | + | chr1_2:57585602-57585621 | Msa0079650:intron | 25.0% |
| ! | TACTCAAACTTGTAATAGTA+TGG | + | chr1_2:57585664-57585683 | Msa0079650:intron | 25.0% |
| ! | AATATGAACAATAGTATAGG+TGG | - | chr1_2:57585791-57585810 | None:intergenic | 25.0% |
| ! | TGATTGAGCATATAACTATT+AGG | - | chr1_2:57586085-57586104 | None:intergenic | 25.0% |
| !!! | TGATTTTGAGTATTTCTTTC+TGG | + | chr1_2:57586486-57586505 | Msa0079650:intron | 25.0% |
| ! | TGTGAATGTTATTGTATTCT+TGG | + | chr1_2:57586533-57586552 | Msa0079650:intron | 25.0% |
| ! | ACATAGACATACAACAAATT+GGG | - | chr1_2:57586676-57586695 | None:intergenic | 25.0% |
| ! | TACATAGACATACAACAAAT+TGG | - | chr1_2:57586677-57586696 | None:intergenic | 25.0% |
| !!! | AATTTGTTGTATGTCTATGT+AGG | + | chr1_2:57586676-57586695 | Msa0079650:intron | 25.0% |
| !! | TTTTATGTTTGGATTTTGGA+GGG | - | chr1_2:57586835-57586854 | None:intergenic | 25.0% |
| !! | AACCTTTTATGTTTGGATTT+TGG | - | chr1_2:57586839-57586858 | None:intergenic | 25.0% |
| !! | AGGTATAAACCTTTTATGTT+TGG | - | chr1_2:57586846-57586865 | None:intergenic | 25.0% |
| ! | TGGAAAAATCAATCAGTTAA+CGG | - | chr1_2:57587202-57587221 | None:intergenic | 25.0% |
| !!! | TATCAGTTTTTTCTAGAATC+TGG | + | chr1_2:57587353-57587372 | Msa0079650:intron | 25.0% |
| !!! | ACTCTCTTTTGTTTCTTTTT+CGG | + | chr1_2:57587399-57587418 | Msa0079650:intron | 25.0% |
| ! | GTTATATAACACAAAACTGA+AGG | - | chr1_2:57587732-57587751 | None:intergenic | 25.0% |
| ! | GTTATATAACTCAGCAAATA+TGG | + | chr1_2:57587742-57587761 | Msa0079650:intron | 25.0% |
| ! | AGCATAACAAAATGACATTA+CGG | - | chr1_2:57587874-57587893 | None:intergenic | 25.0% |
| !!! | TTAGGAAATTATTGATGATG+TGG | - | chr1_2:57588130-57588149 | None:intergenic | 25.0% |
| !! | AAGAGTTTAGAAAGTTTGTT+AGG | - | chr1_2:57588204-57588223 | None:intergenic | 25.0% |
| !! | ATTTAAAGTTTATGTCTGCA+TGG | - | chr1_2:57588721-57588740 | None:intergenic | 25.0% |
| TATCTTAACATGTGTCTTGA+GGG | - | chr1_2:57584313-57584332 | None:intergenic | 30.0% | |
| ! | TAGATAGAGCAATTTTGCAT+TGG | - | chr1_2:57584404-57584423 | None:intergenic | 30.0% |
| TTATCCACAAAACATGGTTA+TGG | + | chr1_2:57584640-57584659 | Msa0079650:five_prime_UTR | 30.0% | |
| GTTGAAAAATCATTACTACG+AGG | - | chr1_2:57584736-57584755 | None:intergenic | 30.0% | |
| ACTTCACTTAATCACAGTTT+AGG | - | chr1_2:57584762-57584781 | None:intergenic | 30.0% | |
| CTCACATAAAAGACAAAACA+AGG | - | chr1_2:57584830-57584849 | None:intergenic | 30.0% | |
| !!! | TCTGTTTTGAAAGATTTTGC+AGG | + | chr1_2:57584946-57584965 | Msa0079650:intron | 30.0% |
| ! | TTCACAAACTTGAACTGTTT+TGG | + | chr1_2:57585310-57585329 | Msa0079650:intron | 30.0% |
| ATTTGACTAATTACCTTTCC+AGG | - | chr1_2:57585456-57585475 | None:intergenic | 30.0% | |
| CTCATCATTCAAAAATTGGT+TGG | + | chr1_2:57585560-57585579 | Msa0079650:intron | 30.0% | |
| ! | CATTCAAAAATTGGTTGGTA+AGG | + | chr1_2:57585565-57585584 | Msa0079650:intron | 30.0% |
| !! | AAAATTGGTTGGTAAGGTAA+AGG | + | chr1_2:57585571-57585590 | Msa0079650:intron | 30.0% |
| CTATTACAAGTTTGAGTATC+AGG | - | chr1_2:57585662-57585681 | None:intergenic | 30.0% | |
| ! | ACTTGTAATAGTATGGACTA+TGG | + | chr1_2:57585671-57585690 | Msa0079650:intron | 30.0% |
| ATTTCATTACCACCTATGAT+TGG | + | chr1_2:57585711-57585730 | Msa0079650:intron | 30.0% | |
| TTTCATTACCACCTATGATT+GGG | + | chr1_2:57585712-57585731 | Msa0079650:intron | 30.0% | |
| AAAATTATACTGCGAGCTTT+CGG | + | chr1_2:57585980-57585999 | Msa0079650:CDS | 30.0% | |
| AAAAACACCATCAATTCCTT+TGG | - | chr1_2:57586032-57586051 | None:intergenic | 30.0% | |
| TGTAAATAACACCTTTGGAT+TGG | - | chr1_2:57586122-57586141 | None:intergenic | 30.0% | |
| TGAACTGTAAATAACACCTT+TGG | - | chr1_2:57586127-57586146 | None:intergenic | 30.0% | |
| TTTCTAATTTGGTTGTTTGG+TGG | + | chr1_2:57586150-57586169 | Msa0079650:intron | 30.0% | |
| TTCTAATTTGGTTGTTTGGT+GGG | + | chr1_2:57586151-57586170 | Msa0079650:intron | 30.0% | |
| CTCAAAATCATAAAATCACC+TGG | - | chr1_2:57586476-57586495 | None:intergenic | 30.0% | |
| !! | TTTATGTTTGGATTTTGGAG+GGG | - | chr1_2:57586834-57586853 | None:intergenic | 30.0% |
| ! | CTTTTATGTTTGGATTTTGG+AGG | - | chr1_2:57586836-57586855 | None:intergenic | 30.0% |
| CTCCAAAATCCAAACATAAA+AGG | + | chr1_2:57586834-57586853 | Msa0079650:intron | 30.0% | |
| TCTAATGTTTCTCATGATAG+TGG | - | chr1_2:57586900-57586919 | None:intergenic | 30.0% | |
| TTGTTCTATCAAAATTGGCT+TGG | + | chr1_2:57586921-57586940 | Msa0079650:intron | 30.0% | |
| TATTCAAGCATAACCATTTG+AGG | + | chr1_2:57587176-57587195 | Msa0079650:intron | 30.0% | |
| TCCATTTGAACACATTTCAA+AGG | + | chr1_2:57587218-57587237 | Msa0079650:intron | 30.0% | |
| TCTACTAGATGAAGTTATTC+AGG | + | chr1_2:57587298-57587317 | Msa0079650:CDS | 30.0% | |
| TGCTCTCAATACTAATACAT+TGG | + | chr1_2:57587322-57587341 | Msa0079650:intron | 30.0% | |
| ! | GAGAGTCTCATTTTATATGA+AGG | - | chr1_2:57587385-57587404 | None:intergenic | 30.0% |
| !! | CTCTCTTTTGTTTCTTTTTC+GGG | + | chr1_2:57587400-57587419 | Msa0079650:intron | 30.0% |
| AATCCTAGCTGTTAATACAA+GGG | + | chr1_2:57587557-57587576 | Msa0079650:intron | 30.0% | |
| !!! | TTTTGTTATGCTGCTTTGAT+AGG | + | chr1_2:57587882-57587901 | Msa0079650:intron | 30.0% |
| CAAAATCGATATGTTACAGA+AGG | + | chr1_2:57587948-57587967 | Msa0079650:intron | 30.0% | |
| ! | TGATAAATGTCTCTTTTCTG+AGG | - | chr1_2:57588004-57588023 | None:intergenic | 30.0% |
| ATAGAACCCTTATTATGGTT+TGG | - | chr1_2:57588033-57588052 | None:intergenic | 30.0% | |
| ! | ATATGAATGTCTTTTGCAGA+TGG | + | chr1_2:57588243-57588262 | Msa0079650:intron | 30.0% |
| ! | TATGAATGTCTTTTGCAGAT+GGG | + | chr1_2:57588244-57588263 | Msa0079650:intron | 30.0% |
| AATACTCACAAGGAAACATT+AGG | - | chr1_2:57588426-57588445 | None:intergenic | 30.0% | |
| CTTTGTTGAATAATAGCGTT+TGG | + | chr1_2:57588675-57588694 | Msa0079650:three_prime_UTR | 30.0% | |
| GTATCTTAACATGTGTCTTG+AGG | - | chr1_2:57584314-57584333 | None:intergenic | 35.0% | |
| TTGTTTAACATGTGCCCTAA+GGG | + | chr1_2:57584426-57584445 | Msa0079650:intron | 35.0% | |
| TAACATGACCCATAGAAGAA+CGG | + | chr1_2:57584456-57584475 | Msa0079650:intron | 35.0% | |
| !! | TTGACATTGACTTGAGATTC+TGG | + | chr1_2:57584504-57584523 | Msa0079650:five_prime_UTR | 35.0% |
| ATTGAACTTGATGAATCGAG+AGG | - | chr1_2:57584538-57584557 | None:intergenic | 35.0% | |
| ! | ATTTTATCGGGTGCCAATTT+CGG | + | chr1_2:57584556-57584575 | Msa0079650:five_prime_UTR | 35.0% |
| ! | AACATGGTTATGGTAGCTTT+TGG | + | chr1_2:57584650-57584669 | Msa0079650:five_prime_UTR | 35.0% |
| ! | TATGGTAGCTTTTGGATCTT+AGG | + | chr1_2:57584658-57584677 | Msa0079650:five_prime_UTR | 35.0% |
| ! | ATGGTAGCTTTTGGATCTTA+GGG | + | chr1_2:57584659-57584678 | Msa0079650:five_prime_UTR | 35.0% |
| CTTACTATACCAAGCTGAAT+AGG | - | chr1_2:57584787-57584806 | None:intergenic | 35.0% | |
| GCTTTCTTCATCAGATAACA+TGG | + | chr1_2:57584968-57584987 | Msa0079650:exon | 35.0% | |
| TTCACGTTCTTATTCAGCTA+TGG | + | chr1_2:57585078-57585097 | Msa0079650:intron | 35.0% | |
| GTTAATAGGAAACACACCAT+TGG | + | chr1_2:57585182-57585201 | Msa0079650:intron | 35.0% | |
| CATTGGAAAATCCCAATCAT+AGG | - | chr1_2:57585726-57585745 | None:intergenic | 35.0% | |
| CTATTCATACCTTGATCTCT+GGG | - | chr1_2:57586340-57586359 | None:intergenic | 35.0% | |
| ACTATTCATACCTTGATCTC+TGG | - | chr1_2:57586341-57586360 | None:intergenic | 35.0% | |
| ACATACAACAAATTGGGACT+CGG | - | chr1_2:57586670-57586689 | None:intergenic | 35.0% | |
| TTGTATGTCTATGTAGGAGA+GGG | + | chr1_2:57586682-57586701 | Msa0079650:intron | 35.0% | |
| ! | GGTTTATACCTTTTCCTCTA+AGG | + | chr1_2:57586855-57586874 | Msa0079650:intron | 35.0% |
| TAAACAGTCCTTAGAGGAAA+AGG | - | chr1_2:57586866-57586885 | None:intergenic | 35.0% | |
| ! | TTTCCTCTAAGGACTGTTTA+AGG | + | chr1_2:57586866-57586885 | Msa0079650:intron | 35.0% |
| ATACCTTAAACAGTCCTTAG+AGG | - | chr1_2:57586872-57586891 | None:intergenic | 35.0% | |
| TTGGAGAAAACTTGAAATGC+AGG | + | chr1_2:57586940-57586959 | Msa0079650:intron | 35.0% | |
| !!! | TTGCTGACTTGTCTGTTTTT+TGG | + | chr1_2:57587016-57587035 | Msa0079650:intron | 35.0% |
| TAAGTCAATGACAACCCAAA+GGG | - | chr1_2:57587062-57587081 | None:intergenic | 35.0% | |
| !! | GCCTTTGAAATGTGTTCAAA+TGG | - | chr1_2:57587222-57587241 | None:intergenic | 35.0% |
| AAATTATGCAGGTTTCACGT+AGG | - | chr1_2:57587426-57587445 | None:intergenic | 35.0% | |
| CTTGTATTAACAGCTAGGAT+TGG | - | chr1_2:57587558-57587577 | None:intergenic | 35.0% | |
| CAATCCTAGCTGTTAATACA+AGG | + | chr1_2:57587556-57587575 | Msa0079650:intron | 35.0% | |
| ATCCTAGCTGTTAATACAAG+GGG | + | chr1_2:57587558-57587577 | Msa0079650:intron | 35.0% | |
| !!! | GGGTTTTGTTTTAACCAACA+AGG | + | chr1_2:57587578-57587597 | Msa0079650:intron | 35.0% |
| TGTAATTCACAGAACCTTGT+TGG | - | chr1_2:57587595-57587614 | None:intergenic | 35.0% | |
| AACAAGGTTCTGTGAATTAC+AGG | + | chr1_2:57587594-57587613 | Msa0079650:intron | 35.0% | |
| TACCAGTAAACCTTCTTTCA+AGG | - | chr1_2:57587659-57587678 | None:intergenic | 35.0% | |
| TGAAAGAAGGTTTACTGGTA+TGG | + | chr1_2:57587659-57587678 | Msa0079650:intron | 35.0% | |
| ACATTACGGTGAGATATGAT+TGG | - | chr1_2:57587860-57587879 | None:intergenic | 35.0% | |
| ACTCAGTCCAAACCATAATA+AGG | + | chr1_2:57588023-57588042 | Msa0079650:intron | 35.0% | |
| CTCAGTCCAAACCATAATAA+GGG | + | chr1_2:57588024-57588043 | Msa0079650:intron | 35.0% | |
| ACCATAATAAGGGTTCTATC+TGG | + | chr1_2:57588034-57588053 | Msa0079650:intron | 35.0% | |
| TCCAGATAGAACCCTTATTA+TGG | - | chr1_2:57588038-57588057 | None:intergenic | 35.0% | |
| GAAGGATGATGCAAAAGATA+AGG | - | chr1_2:57588074-57588093 | None:intergenic | 35.0% | |
| !! | TAGAAAGTTTGTTAGGACAC+AGG | - | chr1_2:57588197-57588216 | None:intergenic | 35.0% |
| ACAGCAGCTGCAATAAAATT+AGG | + | chr1_2:57588286-57588305 | Msa0079650:CDS | 35.0% | |
| CAGCAGCTGCAATAAAATTA+GGG | + | chr1_2:57588287-57588306 | Msa0079650:CDS | 35.0% | |
| GACATCAACTAATACTCACA+AGG | - | chr1_2:57588436-57588455 | None:intergenic | 35.0% | |
| CAAATGACATTTGACTGAAG+TGG | + | chr1_2:57588561-57588580 | Msa0079650:exon | 35.0% | |
| GTTGTTTAACATGTGCCCTA+AGG | + | chr1_2:57584425-57584444 | Msa0079650:intron | 40.0% | |
| TGTTTAACATGTGCCCTAAG+GGG | + | chr1_2:57584427-57584446 | Msa0079650:intron | 40.0% | |
| !! | CATGTTAACTTGTCCCCTTA+GGG | - | chr1_2:57584443-57584462 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTCCCCTT+AGG | - | chr1_2:57584444-57584463 | None:intergenic | 40.0% |
| AACATGACCCATAGAAGAAC+GGG | + | chr1_2:57584457-57584476 | Msa0079650:intron | 40.0% | |
| GTGCCAATTTCGGTGAAAAA+CGG | + | chr1_2:57584566-57584585 | Msa0079650:five_prime_UTR | 40.0% | |
| !! | ACTCCGTTTTTCACCGAAAT+TGG | - | chr1_2:57584572-57584591 | None:intergenic | 40.0% |
| ! | GCTACCATAACCATGTTTTG+TGG | - | chr1_2:57584647-57584666 | None:intergenic | 40.0% |
| ! | ACTACGAGGAATTTTCAGCT+TGG | - | chr1_2:57584722-57584741 | None:intergenic | 40.0% |
| CCTTCTTGATTGCAAAGTGT+TGG | - | chr1_2:57584995-57585014 | None:intergenic | 40.0% | |
| CCAACACTTTGCAATCAAGA+AGG | + | chr1_2:57584992-57585011 | Msa0079650:CDS | 40.0% | |
| TGCAGTGTTAAAGATAGGCA+TGG | + | chr1_2:57585276-57585295 | Msa0079650:intron | 40.0% | |
| ATTGAAGATGCCGAGAGTAA+AGG | + | chr1_2:57585420-57585439 | Msa0079650:CDS | 40.0% | |
| TGTAATGAGGCCTTTACTCT+CGG | - | chr1_2:57585433-57585452 | None:intergenic | 40.0% | |
| TTACCTTTCCAGGTGTAATG+AGG | - | chr1_2:57585446-57585465 | None:intergenic | 40.0% | |
| ! | GTTTTCAAACTGGGCTTGTA+AGG | + | chr1_2:57585487-57585506 | Msa0079650:intron | 40.0% |
| AAACTGGGCTTGTAAGGTTA+GGG | + | chr1_2:57585493-57585512 | Msa0079650:intron | 40.0% | |
| TGGAAAATCCCAATCATAGG+TGG | - | chr1_2:57585723-57585742 | None:intergenic | 40.0% | |
| CTTTCAAGACTCACATAAGC+TGG | - | chr1_2:57585959-57585978 | None:intergenic | 40.0% | |
| AGGGTCTGTCAAATATACCT+CGG | - | chr1_2:57586008-57586027 | None:intergenic | 40.0% | |
| TGAAAACTCTGCCAATCCAA+AGG | + | chr1_2:57586108-57586127 | Msa0079650:CDS | 40.0% | |
| TAGATTCATTACGAGACCAC+TGG | + | chr1_2:57586209-57586228 | Msa0079650:intron | 40.0% | |
| CAGAGTCTTTCCAAATCTCA+GGG | - | chr1_2:57586235-57586254 | None:intergenic | 40.0% | |
| AGATTTGGAAAGACTCTGGA+GGG | + | chr1_2:57586237-57586256 | Msa0079650:CDS | 40.0% | |
| !!! | TAATGTTGCTTTTCCCCTCT+AGG | + | chr1_2:57586403-57586422 | Msa0079650:intron | 40.0% |
| TTCTACACCATACACCTAGA+GGG | - | chr1_2:57586420-57586439 | None:intergenic | 40.0% | |
| TTCAGAACTGCACTTTCAGA+TGG | - | chr1_2:57586443-57586462 | None:intergenic | 40.0% | |
| !! | TCTGAAAGTGCAGTTCTGAA+TGG | + | chr1_2:57586443-57586462 | Msa0079650:CDS | 40.0% |
| AATGTGATGAACGAGAGAGT+TGG | + | chr1_2:57586642-57586661 | Msa0079650:intron | 40.0% | |
| GTTGTATGTCTATGTAGGAG+AGG | + | chr1_2:57586681-57586700 | Msa0079650:intron | 40.0% | |
| TGTATGTCTATGTAGGAGAG+GGG | + | chr1_2:57586683-57586702 | Msa0079650:intron | 40.0% | |
| ! | TTAGACATCTGCAGGTGTTT+TGG | + | chr1_2:57586971-57586990 | Msa0079650:intron | 40.0% |
| AGACAAGTCAGCAATCTAAC+AGG | - | chr1_2:57587010-57587029 | None:intergenic | 40.0% | |
| CTAAGTCAATGACAACCCAA+AGG | - | chr1_2:57587063-57587082 | None:intergenic | 40.0% | |
| AATCAGTTAACGGCCTCAAA+TGG | - | chr1_2:57587192-57587211 | None:intergenic | 40.0% | |
| AAAGGCAAACACCTAATCCA+AGG | + | chr1_2:57587236-57587255 | Msa0079650:intron | 40.0% | |
| AAGGCAAACACCTAATCCAA+GGG | + | chr1_2:57587237-57587256 | Msa0079650:intron | 40.0% | |
| AAACACCTAATCCAAGGGAT+CGG | + | chr1_2:57587242-57587261 | Msa0079650:CDS | 40.0% | |
| TAGATCAACTTCCAGGATAG+GGG | - | chr1_2:57587282-57587301 | None:intergenic | 40.0% | |
| GTAGATCAACTTCCAGGATA+GGG | - | chr1_2:57587283-57587302 | None:intergenic | 40.0% | |
| AGTAGATCAACTTCCAGGAT+AGG | - | chr1_2:57587284-57587303 | None:intergenic | 40.0% | |
| CATCTAGTAGATCAACTTCC+AGG | - | chr1_2:57587289-57587308 | None:intergenic | 40.0% | |
| AACCCCTTGTATTAACAGCT+AGG | - | chr1_2:57587563-57587582 | None:intergenic | 40.0% | |
| TGCCTTGAAAGAAGGTTTAC+TGG | + | chr1_2:57587654-57587673 | Msa0079650:CDS | 40.0% | |
| !! | TTTCTGAGGAGCTTTTGCTA+CGG | - | chr1_2:57587990-57588009 | None:intergenic | 40.0% |
| TGAGAGGAACGTGATTATAG+GGG | - | chr1_2:57588097-57588116 | None:intergenic | 40.0% | |
| GTGAGAGGAACGTGATTATA+GGG | - | chr1_2:57588098-57588117 | None:intergenic | 40.0% | |
| TGTGAGAGGAACGTGATTAT+AGG | - | chr1_2:57588099-57588118 | None:intergenic | 40.0% | |
| ATGTGGCAGTTAATTGTGAG+AGG | - | chr1_2:57588113-57588132 | None:intergenic | 40.0% | |
| ! | GTTTGTTAGGACACAGGTTT+GGG | - | chr1_2:57588191-57588210 | None:intergenic | 40.0% |
| !! | AGTTTGTTAGGACACAGGTT+TGG | - | chr1_2:57588192-57588211 | None:intergenic | 40.0% |
| TTGCAGATGGGAATTTCATC+AGG | + | chr1_2:57588256-57588275 | Msa0079650:intron | 40.0% | |
| ! | ATGAGCTTTCCTGCATTTTC+TGG | - | chr1_2:57588319-57588338 | None:intergenic | 40.0% |
| ! | CAGGTGATTTTTCCCAGTTT+TGG | + | chr1_2:57588486-57588505 | Msa0079650:intron | 40.0% |
| ! | AAGTATCGCTCTCCAAAACT+GGG | - | chr1_2:57588501-57588520 | None:intergenic | 40.0% |
| !! | TGCCTGATGGATTCAAAAAG+CGG | - | chr1_2:57588531-57588550 | None:intergenic | 40.0% |
| !! | AAGAGTGCCCGTTCTTCTAT+GGG | - | chr1_2:57584467-57584486 | None:intergenic | 45.0% |
| !! | TAAGAGTGCCCGTTCTTCTA+TGG | - | chr1_2:57584468-57584487 | None:intergenic | 45.0% |
| GTGAAGTCTCCTATTCAGCT+TGG | + | chr1_2:57584775-57584794 | Msa0079650:five_prime_UTR | 45.0% | |
| CCTATCTTTAACACTGCAGC+AGG | - | chr1_2:57585274-57585293 | None:intergenic | 45.0% | |
| CCTGCTGCAGTGTTAAAGAT+AGG | + | chr1_2:57585271-57585290 | Msa0079650:CDS | 45.0% | |
| AGTAAAGGCCTCATTACACC+TGG | + | chr1_2:57585435-57585454 | Msa0079650:CDS | 45.0% | |
| CAAACTGGGCTTGTAAGGTT+AGG | + | chr1_2:57585492-57585511 | Msa0079650:intron | 45.0% | |
| AACTGGGCTTGTAAGGTTAG+GGG | + | chr1_2:57585494-57585513 | Msa0079650:intron | 45.0% | |
| GTTCTTGTTGAGCCAACAAG+TGG | + | chr1_2:57585869-57585888 | Msa0079650:CDS | 45.0% | |
| TATTTGACAGACCCTGCCAA+AGG | + | chr1_2:57586013-57586032 | Msa0079650:CDS | 45.0% | |
| CACCATCAATTCCTTTGGCA+GGG | - | chr1_2:57586027-57586046 | None:intergenic | 45.0% | |
| ACACCATCAATTCCTTTGGC+AGG | - | chr1_2:57586028-57586047 | None:intergenic | 45.0% | |
| CCAGAGTCTTTCCAAATCTC+AGG | - | chr1_2:57586236-57586255 | None:intergenic | 45.0% | |
| CCTGAGATTTGGAAAGACTC+TGG | + | chr1_2:57586233-57586252 | Msa0079650:CDS | 45.0% | |
| GAGATTTGGAAAGACTCTGG+AGG | + | chr1_2:57586236-57586255 | Msa0079650:CDS | 45.0% | |
| !! | AGAGTTGATGCTTTGGTTGC+AGG | + | chr1_2:57586260-57586279 | Msa0079650:CDS | 45.0% |
| !! | GAGTTGATGCTTTGGTTGCA+GGG | + | chr1_2:57586261-57586280 | Msa0079650:CDS | 45.0% |
| ! | TCTCTGGGTTTTTCTCCTTG+AGG | - | chr1_2:57586325-57586344 | None:intergenic | 45.0% |
| GGAGAAAAACCCAGAGATCA+AGG | + | chr1_2:57586328-57586347 | Msa0079650:CDS | 45.0% | |
| TCTACACCATACACCTAGAG+GGG | - | chr1_2:57586419-57586438 | None:intergenic | 45.0% | |
| GTTCTACACCATACACCTAG+AGG | - | chr1_2:57586421-57586440 | None:intergenic | 45.0% | |
| !! | GAAAGTGCAGTTCTGAATGG+AGG | + | chr1_2:57586446-57586465 | Msa0079650:CDS | 45.0% |
| !! | GATTTTGGAGGGGAGAGTTT+TGG | - | chr1_2:57586824-57586843 | None:intergenic | 45.0% |
| CAGCACTATTAGACATCTGC+AGG | + | chr1_2:57586963-57586982 | Msa0079650:intron | 45.0% | |
| AAAAGCTGCACTTAGCCCTT+TGG | + | chr1_2:57587044-57587063 | Msa0079650:intron | 45.0% | |
| AAAGCTGCACTTAGCCCTTT+GGG | + | chr1_2:57587045-57587064 | Msa0079650:intron | 45.0% | |
| AGATCAACTTCCAGGATAGG+GGG | - | chr1_2:57587281-57587300 | None:intergenic | 45.0% | |
| AAGCTGCTTGCCTTGAAAGA+AGG | + | chr1_2:57587646-57587665 | Msa0079650:CDS | 45.0% | |
| ! | TTTTGCTACGGGGTTACAGT+GGG | - | chr1_2:57587978-57587997 | None:intergenic | 45.0% |
| !! | TTCTGAGGAGCTTTTGCTAC+GGG | - | chr1_2:57587989-57588008 | None:intergenic | 45.0% |
| GAGAGGAACGTGATTATAGG+GGG | - | chr1_2:57588096-57588115 | None:intergenic | 45.0% | |
| ! | TAGGACACAGGTTTGGGTTA+GGG | - | chr1_2:57588185-57588204 | None:intergenic | 45.0% |
| ! | TTAGGACACAGGTTTGGGTT+AGG | - | chr1_2:57588186-57588205 | None:intergenic | 45.0% |
| CTTCTGAATCGTTGTTGTGC+AGG | + | chr1_2:57588467-57588486 | Msa0079650:intron | 45.0% | |
| ! | CAAGTATCGCTCTCCAAAAC+TGG | - | chr1_2:57588502-57588521 | None:intergenic | 45.0% |
| !!! | CACCGCTTTTTGAATCCATC+AGG | + | chr1_2:57588526-57588545 | Msa0079650:CDS | 45.0% |
| TTGTTCAGCTTCATGCCTGA+TGG | - | chr1_2:57588544-57588563 | None:intergenic | 45.0% | |
| CACAATTGTGACAGTAGAGC+TGG | - | chr1_2:57588619-57588638 | None:intergenic | 45.0% | |
| CAGCTCTACTGTCACAATTG+TGG | + | chr1_2:57588617-57588636 | Msa0079650:intron | 45.0% | |
| !! | ATAAAAATATATATATCAAA+AGG | + | chr1_2:57584339-57584358 | Msa0079650:intron | 5.0% |
| !!! | TTATTATTATTTTTTTTTGA+AGG | + | chr1_2:57587765-57587784 | Msa0079650:intron | 5.0% |
| ! | ACATGTGTCTTGAGGGCACA+AGG | - | chr1_2:57584306-57584325 | None:intergenic | 50.0% |
| AGGCCTCATTACACCTGGAA+AGG | + | chr1_2:57585440-57585459 | Msa0079650:CDS | 50.0% | |
| GAGCCAACAAGTGGTAACAC+CGG | + | chr1_2:57585878-57585897 | Msa0079650:CDS | 50.0% | |
| !! | ATGCCGGTGTTACCACTTGT+TGG | - | chr1_2:57585884-57585903 | None:intergenic | 50.0% |
| ACAAGTGGTAACACCGGCAT+AGG | + | chr1_2:57585884-57585903 | Msa0079650:CDS | 50.0% | |
| TGGTAACACCGGCATAGGAT+TGG | + | chr1_2:57585889-57585908 | Msa0079650:CDS | 50.0% | |
| TATCGACGCCAATCCTATGC+CGG | - | chr1_2:57585900-57585919 | None:intergenic | 50.0% | |
| GACCCTGCCAAAGGAATTGA+TGG | + | chr1_2:57586022-57586041 | Msa0079650:CDS | 50.0% | |
| TTTCCAAATCTCAGGGCCAG+TGG | - | chr1_2:57586228-57586247 | None:intergenic | 50.0% | |
| !! | TGGAGGGAGAGTTGATGCTT+TGG | + | chr1_2:57586253-57586272 | Msa0079650:CDS | 50.0% |
| GATGCTTTGGTTGCAGGGAT+AGG | + | chr1_2:57586266-57586285 | Msa0079650:CDS | 50.0% | |
| TTGGTTGCAGGGATAGGAAC+TGG | + | chr1_2:57586272-57586291 | Msa0079650:CDS | 50.0% | |
| TGGTTGCAGGGATAGGAACT+GGG | + | chr1_2:57586273-57586292 | Msa0079650:CDS | 50.0% | |
| GGGGAACAGTAACAGGTGTT+GGG | + | chr1_2:57586294-57586313 | Msa0079650:CDS | 50.0% | |
| !! | AGGTGTTGGGAAGTTCCTCA+AGG | + | chr1_2:57586307-57586326 | Msa0079650:CDS | 50.0% |
| ! | GCTTTTCCCCTCTAGGTGTA+TGG | + | chr1_2:57586410-57586429 | Msa0079650:intron | 50.0% |
| ! | GTTCTGAATGGAGGAAAGCC+AGG | + | chr1_2:57586455-57586474 | Msa0079650:CDS | 50.0% |
| !!! | TCTGCAGGTGTTTTGGCATC+TGG | + | chr1_2:57586978-57586997 | Msa0079650:intron | 50.0% |
| TTTGCTACGGGGTTACAGTG+GGG | - | chr1_2:57587977-57587996 | None:intergenic | 50.0% | |
| ! | CTTTTGCTACGGGGTTACAG+TGG | - | chr1_2:57587979-57587998 | None:intergenic | 50.0% |
| ! | TCTGAGGAGCTTTTGCTACG+GGG | - | chr1_2:57587988-57588007 | None:intergenic | 50.0% |
| GGAACGTGATTATAGGGGGA+AGG | - | chr1_2:57588092-57588111 | None:intergenic | 50.0% | |
| ATGGGCTTGACAGCGAAGTT+AGG | - | chr1_2:57588148-57588167 | None:intergenic | 50.0% | |
| TCGCTGTCAAGCCCATTTGT+TGG | + | chr1_2:57588152-57588171 | Msa0079650:intron | 50.0% | |
| CGCTGTCAAGCCCATTTGTT+GGG | + | chr1_2:57588153-57588172 | Msa0079650:intron | 50.0% | |
| ! | CAAGCCCATTTGTTGGGCTT+AGG | + | chr1_2:57588159-57588178 | Msa0079650:intron | 50.0% |
| AGGGCCTAAGCCCAACAAAT+GGG | - | chr1_2:57588166-57588185 | None:intergenic | 50.0% | |
| TAGGGCCTAAGCCCAACAAA+TGG | - | chr1_2:57588167-57588186 | None:intergenic | 50.0% | |
| GGGAAGAGACCAGAAAATGC+AGG | + | chr1_2:57588307-57588326 | Msa0079650:CDS | 50.0% | |
| !! | TGGCGTCGATAGCAGCAATG+AGG | + | chr1_2:57585909-57585928 | Msa0079650:CDS | 55.0% |
| !! | GGCGTCGATAGCAGCAATGA+GGG | + | chr1_2:57585910-57585929 | Msa0079650:CDS | 55.0% |
| ! | GCGTCGATAGCAGCAATGAG+GGG | + | chr1_2:57585911-57585930 | Msa0079650:CDS | 55.0% |
| AGACCACTGGCCCTGAGATT+TGG | + | chr1_2:57586222-57586241 | Msa0079650:CDS | 55.0% | |
| GGTTGCAGGGATAGGAACTG+GGG | + | chr1_2:57586274-57586293 | Msa0079650:CDS | 55.0% | |
| GTTGCAGGGATAGGAACTGG+GGG | + | chr1_2:57586275-57586294 | Msa0079650:CDS | 55.0% | |
| GGAACTGGGGGAACAGTAAC+AGG | + | chr1_2:57586287-57586306 | Msa0079650:CDS | 55.0% | |
| GGGGGAACAGTAACAGGTGT+TGG | + | chr1_2:57586293-57586312 | Msa0079650:CDS | 55.0% | |
| !! | CAGCACCGATCCCTTGGATT+AGG | - | chr1_2:57587250-57587269 | None:intergenic | 55.0% |
| CTAATCCAAGGGATCGGTGC+TGG | + | chr1_2:57587248-57587267 | Msa0079650:CDS | 55.0% | |
| !! | TGGTGTCGTTCCCCCTATCC+TGG | + | chr1_2:57587268-57587287 | Msa0079650:CDS | 60.0% |
| ACTGCGAGCTTTCGGAGCCG+AGG | + | chr1_2:57585988-57586007 | Msa0079650:CDS | 65.0% | |
| !! | CGACACCAGCACCGATCCCT+TGG | - | chr1_2:57587256-57587275 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57584254 | 57588772 | 57584254 | ID=Msa0079650;Name=Msa0079650 |
| chr1_2 | mRNA | 57584254 | 57588772 | 57584254 | ID=Msa0079650-mRNA-1;Parent=Msa0079650;Name=Msa0079650-mRNA-1;_AED=0.33;_eAED=0.33;_QI=392|1|1|1|0.58|0.53|13|167|323 |
| chr1_2 | exon | 57584254 | 57584286 | 57584254 | ID=Msa0079650-mRNA-1:exon:18229;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57584471 | 57584801 | 57584471 | ID=Msa0079650-mRNA-1:exon:18230;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57584959 | 57585025 | 57584959 | ID=Msa0079650-mRNA-1:exon:18231;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57585183 | 57585292 | 57585183 | ID=Msa0079650-mRNA-1:exon:18232;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57585404 | 57585461 | 57585404 | ID=Msa0079650-mRNA-1:exon:18233;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57585866 | 57586129 | 57585866 | ID=Msa0079650-mRNA-1:exon:18234;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57586212 | 57586349 | 57586212 | ID=Msa0079650-mRNA-1:exon:18235;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57586425 | 57586476 | 57586425 | ID=Msa0079650-mRNA-1:exon:18236;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57587240 | 57587319 | 57587240 | ID=Msa0079650-mRNA-1:exon:18237;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57587616 | 57587675 | 57587616 | ID=Msa0079650-mRNA-1:exon:18238;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57588262 | 57588342 | 57588262 | ID=Msa0079650-mRNA-1:exon:18239;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57588489 | 57588624 | 57588489 | ID=Msa0079650-mRNA-1:exon:18240;Parent=Msa0079650-mRNA-1 |
| chr1_2 | exon | 57588652 | 57588772 | 57588652 | ID=Msa0079650-mRNA-1:exon:18241;Parent=Msa0079650-mRNA-1 |
| chr1_2 | five_prime_UTR | 57584254 | 57584286 | 57584254 | ID=Msa0079650-mRNA-1:five_prime_utr;Parent=Msa0079650-mRNA-1 |
| chr1_2 | five_prime_UTR | 57584471 | 57584801 | 57584471 | ID=Msa0079650-mRNA-1:five_prime_utr;Parent=Msa0079650-mRNA-1 |
| chr1_2 | five_prime_UTR | 57584959 | 57584986 | 57584959 | ID=Msa0079650-mRNA-1:five_prime_utr;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57584987 | 57585025 | 57584987 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57585183 | 57585292 | 57585183 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57585404 | 57585461 | 57585404 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57585866 | 57586129 | 57585866 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57586212 | 57586349 | 57586212 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57586425 | 57586476 | 57586425 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57587240 | 57587319 | 57587240 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57587616 | 57587675 | 57587616 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57588262 | 57588342 | 57588262 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | CDS | 57588489 | 57588578 | 57588489 | ID=Msa0079650-mRNA-1:cds;Parent=Msa0079650-mRNA-1 |
| chr1_2 | three_prime_UTR | 57588579 | 57588624 | 57588579 | ID=Msa0079650-mRNA-1:three_prime_utr;Parent=Msa0079650-mRNA-1 |
| chr1_2 | three_prime_UTR | 57588652 | 57588772 | 57588652 | ID=Msa0079650-mRNA-1:three_prime_utr;Parent=Msa0079650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
