Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462740 | XP_013447061.1 | 99.094 | 993 | 8 | 1 | 1 | 993 | 1 | 992 | 0.0 | 2023 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462740 | A0A072TW30 | 99.094 | 993 | 8 | 1 | 1 | 993 | 1 | 992 | 0.0 | 2023 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa1462740 | 0.805095 | 1.574658e-49 | -8.615850e-47 |
| Msa1449780 | Msa1462740 | 0.988183 | 4.978022e-173 | -8.615850e-47 |
| Msa1259160 | Msa1462740 | 0.802220 | 6.220963e-49 | -8.615850e-47 |
| Msa1299650 | Msa1462740 | 0.801331 | 9.470847e-49 | -8.615850e-47 |
| Msa1306470 | Msa1462740 | 0.960448 | 1.439338e-118 | -8.615850e-47 |
| Msa0368640 | Msa1462740 | 0.804476 | 2.121346e-49 | -8.615850e-47 |
| Msa1210040 | Msa1462740 | 0.801056 | 1.077864e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462740 | MtrunA17_Chr8g0387111 | 99.094 | 993 | 8 | 1 | 1 | 993 | 1 | 992 | 0.0 | 2023 |
| Msa1462740 | MtrunA17_Chr3g0079761 | 36.384 | 874 | 488 | 18 | 143 | 989 | 157 | 989 | 1.06e-178 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462740 | AT4G23440.2 | 62.651 | 996 | 321 | 17 | 8 | 993 | 7 | 961 | 0.0 | 1229 |
| Msa1462740 | AT4G23440.1 | 62.651 | 996 | 321 | 17 | 8 | 993 | 7 | 961 | 0.0 | 1229 |
| Msa1462740 | AT5G56220.2 | 35.845 | 982 | 539 | 21 | 28 | 989 | 63 | 973 | 0.0 | 591 |
| Msa1462740 | AT5G56220.1 | 35.845 | 982 | 539 | 21 | 28 | 989 | 63 | 973 | 0.0 | 591 |
Find 198 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGATGATTGCTATTC+TGG | 0.168986 | tig0042551:+3783 | Msa1462740:CDS |
| ATTCTTGTTGCTAGGCTCTT+AGG | 0.170857 | tig0042551:-5532 | Msa1462740:intergenic |
| TGGATCTTCTCCCTCGTTTC+GGG | 0.175608 | tig0042551:+5134 | Msa1462740:CDS |
| CTTCAAGGGCATCCTGTTTA+TGG | 0.176325 | tig0042551:-5404 | Msa1462740:intergenic |
| CTTTGGCAGCAATGAGTTTA+AGG | 0.176701 | tig0042551:+3454 | Msa1462740:CDS |
| TTGGAGAAAACAAGTATAAA+AGG | 0.233678 | tig0042551:+4986 | Msa1462740:CDS |
| CTCAGTTGAATCCTTGTCTT+TGG | 0.246198 | tig0042551:+6163 | Msa1462740:CDS |
| TTCAGCTCCTCAATGGTATA+TGG | 0.272131 | tig0042551:-4110 | Msa1462740:intergenic |
| ATGGATCTTCTCCCTCGTTT+CGG | 0.280352 | tig0042551:+5133 | Msa1462740:CDS |
| AAGAGTCTGCTTGGTGTTAT+AGG | 0.281040 | tig0042551:-5376 | Msa1462740:intergenic |
| ATAGCACCATCTTGTATCTT+TGG | 0.281416 | tig0042551:-4877 | Msa1462740:intergenic |
| CTAAAACTTTCATACTTATC+TGG | 0.290288 | tig0042551:+5214 | Msa1462740:CDS |
| GCTCTTCGATGTTTGTTTCT+CGG | 0.293083 | tig0042551:+5489 | Msa1462740:CDS |
| CGGGACCAAATTCTTCTTGC+TGG | 0.301223 | tig0042551:-4141 | Msa1462740:intergenic |
| ATGAAAGAAATGAAAGTAGT+AGG | 0.301352 | tig0042551:+4630 | Msa1462740:CDS |
| TTTCTCCAGCAAGAAGAATT+TGG | 0.305624 | tig0042551:+4136 | Msa1462740:CDS |
| GTTTGATGAGTTCATTGAAT+TGG | 0.311310 | tig0042551:-5783 | Msa1462740:intergenic |
| TTCCTCCACCTTTGGACCTT+TGG | 0.313442 | tig0042551:+3437 | Msa1462740:CDS |
| AAATGACACGACGACGTTCT+TGG | 0.317499 | tig0042551:-3534 | Msa1462740:intergenic |
| TCGCCGAGCATTTGAGAAAA+TGG | 0.318891 | tig0042551:+4411 | Msa1462740:CDS |
| TCTGACTCCTTCCACAAAAC+TGG | 0.337643 | tig0042551:-4665 | Msa1462740:intergenic |
| TCTCCAGCTGCCTGTACTTC+AGG | 0.338303 | tig0042551:+3687 | Msa1462740:CDS |
| GCATGTGTATCAGGAGATTC+AGG | 0.348944 | tig0042551:+4809 | Msa1462740:CDS |
| CAACTGAGCATTAGTTTGAA+TGG | 0.353807 | tig0042551:-6148 | Msa1462740:intergenic |
| AAAGGTATTGCATGTGTATC+AGG | 0.354608 | tig0042551:+4800 | Msa1462740:CDS |
| CTCTGCAATGACAAGCTTGT+TGG | 0.357217 | tig0042551:-4027 | Msa1462740:intergenic |
| GCTAGGAAAAGAGAAGTTAT+TGG | 0.361654 | tig0042551:+5811 | Msa1462740:CDS |
| ATTCTGTCATTTGAAGCTTC+AGG | 0.363962 | tig0042551:-3573 | Msa1462740:intergenic |
| GCTATGGACGTTGCTTCTTT+CGG | 0.373927 | tig0042551:+4053 | Msa1462740:CDS |
| AGAGGGGCACAATTTGATAT+AGG | 0.375105 | tig0042551:+6243 | Msa1462740:CDS |
| ATCTCTAGTAGCACCATATC+TGG | 0.376967 | tig0042551:+3750 | Msa1462740:CDS |
| GGACTCAGATCAAAGTATAT+CGG | 0.382250 | tig0042551:-4161 | Msa1462740:intergenic |
| GTCCATTTGATTGTCTTGTA+AGG | 0.382998 | tig0042551:+4180 | Msa1462740:CDS |
| AAAATGGAAAGAGAAAATTA+AGG | 0.383247 | tig0042551:+4427 | Msa1462740:CDS |
| GCAAGTGCTAACAATGAAAC+TGG | 0.387890 | tig0042551:-5592 | Msa1462740:intergenic |
| GAAGAAAGTTCCTCCACCTT+TGG | 0.391834 | tig0042551:+3429 | Msa1462740:CDS |
| TTCTTGTTGCTAGGCTCTTA+GGG | 0.392871 | tig0042551:-5531 | Msa1462740:intergenic |
| GTATCAGGAGATTCAGGAAT+TGG | 0.394294 | tig0042551:+4815 | Msa1462740:CDS |
| GTAAAGAAGCTCACGCCTTC+CGG | 0.394828 | tig0042551:+5446 | Msa1462740:CDS |
| GAATATGTCTTCGTCGTCTT+CGG | 0.397426 | tig0042551:+3476 | Msa1462740:CDS |
| AAGGGATATAATTGAGAAAA+GGG | 0.399396 | tig0042551:+4199 | Msa1462740:CDS |
| CCTTCCTCGCGTCATGAACT+TGG | 0.399410 | tig0042551:+5186 | Msa1462740:CDS |
| TCTTGTGATCATTGATAACT+TGG | 0.400919 | tig0042551:+5075 | Msa1462740:CDS |
| TAACTCGGCACACAACCATT+TGG | 0.407147 | tig0042551:-3952 | Msa1462740:intergenic |
| TCCAGAATAGCAATCATCAT+AGG | 0.409912 | tig0042551:-3784 | Msa1462740:intergenic |
| AAGCTTGGAAGGTTAACTTT+AGG | 0.410083 | tig0042551:+5319 | Msa1462740:CDS |
| TGAGAAAAGGGGTGAGTTGT+GGG | 0.412661 | tig0042551:+4211 | Msa1462740:CDS |
| TAAGGGATATAATTGAGAAA+AGG | 0.414196 | tig0042551:+4198 | Msa1462740:CDS |
| TGAAAGAAATGAAAGTAGTA+GGG | 0.416453 | tig0042551:+4631 | Msa1462740:CDS |
| TGTGAGTGTTGAGAATAGTT+TGG | 0.416592 | tig0042551:+4967 | Msa1462740:CDS |
| AGGGTCAATATCTCAACATC+TGG | 0.421115 | tig0042551:+5870 | Msa1462740:CDS |
| CCCTCTCTCGGGTCGAAGAA+TGG | 0.421987 | tig0042551:+4303 | Msa1462740:CDS |
| CGACCGGTGTAACTAATGTT+TGG | 0.427622 | tig0042551:-6092 | Msa1462740:intergenic |
| GAGGGGCACAATTTGATATA+GGG | 0.428606 | tig0042551:+6244 | Msa1462740:CDS |
| ACTTTAGGCCTCGCCATCAT+TGG | 0.441337 | tig0042551:+5334 | Msa1462740:CDS |
| GAAAGAGAAAATTAAGGAAG+AGG | 0.442204 | tig0042551:+4433 | Msa1462740:CDS |
| TGGAAGCTCAGGATGGAAAC+TGG | 0.442332 | tig0042551:+4330 | Msa1462740:CDS |
| CTCAACATCTGGATCATTTG+TGG | 0.442767 | tig0042551:+5881 | Msa1462740:CDS |
| AATGCTCGGCGACACTTCTT+CGG | 0.444558 | tig0042551:-4400 | Msa1462740:intergenic |
| ATGCTGTCCATGCCCTCTCT+CGG | 0.444658 | tig0042551:+4291 | Msa1462740:CDS |
| TCAGTTGCTTTGTATCAGAT+AGG | 0.444844 | tig0042551:+3988 | Msa1462740:CDS |
| GCAGAAGAAAAGTGTTCTTC+CGG | 0.448634 | tig0042551:-5465 | Msa1462740:intergenic |
| CCATGAAGACATCTCCTTCA+AGG | 0.448705 | tig0042551:-5419 | Msa1462740:intergenic |
| CTCAGCGGCACTACCGTTCG+AGG | 0.456839 | tig0042551:+4720 | Msa1462740:CDS |
| GGAAGTGAAACCACAGGTTA+AGG | 0.459113 | tig0042551:-5674 | Msa1462740:intergenic |
| CTGCATATCACCTGAAGTAC+AGG | 0.462098 | tig0042551:-3697 | Msa1462740:intergenic |
| AAGATAAGGGAACTTGTTTG+TGG | 0.464392 | tig0042551:+5635 | Msa1462740:CDS |
| TGATAAAATTCCACCAATGA+TGG | 0.465348 | tig0042551:-5347 | Msa1462740:intergenic |
| AAAGAAAGAGCTTTCTCAGT+TGG | 0.467486 | tig0042551:+4493 | Msa1462740:CDS |
| TCAACATCTGGATCATTTGT+GGG | 0.472212 | tig0042551:+5882 | Msa1462740:CDS |
| GACTCAGATCAAAGTATATC+GGG | 0.474481 | tig0042551:-4160 | Msa1462740:intergenic |
| CCTTGAAGGAGATGTCTTCA+TGG | 0.475454 | tig0042551:+5419 | Msa1462740:CDS |
| TGCTGTCCATGCCCTCTCTC+GGG | 0.476784 | tig0042551:+4292 | Msa1462740:CDS |
| CATAAACAGGATGCCCTTGA+AGG | 0.483188 | tig0042551:+5405 | Msa1462740:CDS |
| GGGATGGCAGTAACCAGATA+TGG | 0.485467 | tig0042551:-3763 | Msa1462740:intergenic |
| AATTTGTGGTGATGATCATC+CGG | 0.486755 | tig0042551:+6305 | Msa1462740:CDS |
| ACTTGGAAAGCGAAACTGAT+TGG | 0.486832 | tig0042551:+5092 | Msa1462740:CDS |
| TCCCTTACAAGACAATCAAA+TGG | 0.489954 | tig0042551:-4182 | Msa1462740:intergenic |
| AAAAGAAGGCATTTGACCAT+TGG | 0.490531 | tig0042551:+4584 | Msa1462740:CDS |
| AACGCAGTGGTAAGTATAGT+AGG | 0.491664 | tig0042551:+4747 | Msa1462740:CDS |
| CCTCGAGCTCGACAACCGTT+GGG | 0.492301 | tig0042551:-5939 | Msa1462740:intergenic |
| CAAGTACCATTCTTGTTGCT+AGG | 0.494073 | tig0042551:-5540 | Msa1462740:intergenic |
| GACTCTTAGATACCATAAAC+AGG | 0.496175 | tig0042551:+5392 | Msa1462740:CDS |
| TTAGGCCTCGCCATCATTGG+TGG | 0.497790 | tig0042551:+5337 | Msa1462740:CDS |
| AGAATGGAAGTTGGAAGCTC+AGG | 0.498559 | tig0042551:+4319 | Msa1462740:CDS |
| TTGAGAAAAGGGGTGAGTTG+TGG | 0.498606 | tig0042551:+4210 | Msa1462740:CDS |
| TATTGGATCTTCACATGCAA+TGG | 0.498885 | tig0042551:+5828 | Msa1462740:CDS |
| CAATGAAACTGGAATGGGAC+TGG | 0.502774 | tig0042551:-5581 | Msa1462740:intergenic |
| GAGCTAAGCTTATGCTAAGA+GGG | 0.503364 | tig0042551:+6226 | Msa1462740:CDS |
| ACATTGTTAGCAATGAGGTT+AGG | 0.503511 | tig0042551:+4377 | Msa1462740:CDS |
| TCCATTTGATTGTCTTGTAA+GGG | 0.506586 | tig0042551:+4181 | Msa1462740:CDS |
| AAAGAGAGGCGAAGTAAGAA+AGG | 0.508110 | tig0042551:+3810 | Msa1462740:CDS |
| GCAAGATTATATTGAACTCA+AGG | 0.511718 | tig0042551:+4553 | Msa1462740:CDS |
| TTTATCAGGAGTTCAATTTG+TGG | 0.512741 | tig0042551:+6291 | Msa1462740:CDS |
| TTTGTATGGAGGGTTGAAGC+AGG | 0.513984 | tig0042551:+4259 | Msa1462740:CDS |
| ATGGTATCTAAGAGTCTGCT+TGG | 0.515528 | tig0042551:-5385 | Msa1462740:intergenic |
| AGAACAATTGAGGAGAAGCT+TGG | 0.520523 | tig0042551:+5304 | Msa1462740:CDS |
| ACCTCGAGCTCGACAACCGT+TGG | 0.521798 | tig0042551:-5940 | Msa1462740:intergenic |
| CAAGCTTGTCATTGCAGAGA+AGG | 0.522391 | tig0042551:+4031 | Msa1462740:CDS |
| TAGGAAGAAAAGAGGAGTGA+AGG | 0.522607 | tig0042551:+4766 | Msa1462740:CDS |
| TAGTTACACCGGTCGATAAG+TGG | 0.525503 | tig0042551:+6100 | Msa1462740:CDS |
| TCACCTGAAGTACAGGCAGC+TGG | 0.525786 | tig0042551:-3690 | Msa1462740:intergenic |
| TTGGAAAATCTTACAAGAGG+AGG | 0.526110 | tig0042551:-3933 | Msa1462740:intergenic |
| AGAGCTAAGCTTATGCTAAG+AGG | 0.526272 | tig0042551:+6225 | Msa1462740:CDS |
| TGCTAACAATGAAACTGGAA+TGG | 0.528855 | tig0042551:-5587 | Msa1462740:intergenic |
| CAGTTGCTTTGTATCAGATA+GGG | 0.529154 | tig0042551:+3989 | Msa1462740:CDS |
| AAGGCATTTGACCATTGGTA+GGG | 0.530952 | tig0042551:+4589 | Msa1462740:CDS |
| AGCAAAACTATCTAAACCTC+AGG | 0.532436 | tig0042551:+4927 | Msa1462740:CDS |
| TCGGTATTTGATCACGCAGA+CGG | 0.535576 | tig0042551:+5508 | Msa1462740:CDS |
| AAGTATAGTAGGAAGAAAAG+AGG | 0.535877 | tig0042551:+4758 | Msa1462740:CDS |
| TGCTAAGTTTCAACATTGCA+AGG | 0.536485 | tig0042551:+5737 | Msa1462740:CDS |
| TCGCGAGCAAATATAGTATC+CGG | 0.536849 | tig0042551:-6324 | Msa1462740:intergenic |
| ACAAGAATGGTACTTGTAAG+TGG | 0.537495 | tig0042551:+5547 | Msa1462740:CDS |
| GAAGGCATTTGACCATTGGT+AGG | 0.538042 | tig0042551:+4588 | Msa1462740:CDS |
| TCAAGGCAAGATCGAAAAGA+AGG | 0.541335 | tig0042551:+4570 | Msa1462740:CDS |
| GGTTCGACAAATCACTCTGT+TGG | 0.544300 | tig0042551:+6121 | Msa1462740:CDS |
| TCGGGTCGAAGAATGGAAGT+TGG | 0.544406 | tig0042551:+4310 | Msa1462740:CDS |
| CTTAAACTCATTGCTGCCAA+AGG | 0.548486 | tig0042551:-3453 | Msa1462740:intergenic |
| CAAGAATCCATATACCATTG+AGG | 0.550407 | tig0042551:+4103 | Msa1462740:CDS |
| TGATGCTCTGAGAACAATTG+AGG | 0.550856 | tig0042551:+5294 | Msa1462740:CDS |
| TGTGCCGAGTTAGAAATTCA+CGG | 0.551801 | tig0042551:+3963 | Msa1462740:CDS |
| CATGAAGACATCTCCTTCAA+GGG | 0.552668 | tig0042551:-5418 | Msa1462740:intergenic |
| AACTCATCAAACTATATGCT+AGG | 0.554120 | tig0042551:+5794 | Msa1462740:CDS |
| CCAGAATAGCAATCATCATA+GGG | 0.554735 | tig0042551:-3783 | Msa1462740:intergenic |
| TACCTACCGAGGAAGATATA+CGG | 0.554833 | tig0042551:-3728 | Msa1462740:intergenic |
| CCCAACGGTTGTCGAGCTCG+AGG | 0.556046 | tig0042551:+5939 | Msa1462740:CDS |
| GCTAACAATGAAACTGGAAT+GGG | 0.556645 | tig0042551:-5586 | Msa1462740:intergenic |
| TTGTCGAACCACTTATCGAC+CGG | 0.556695 | tig0042551:-6108 | Msa1462740:intergenic |
| GATCTTCTCCCTCGTTTCGG+GGG | 0.560904 | tig0042551:+5136 | Msa1462740:CDS |
| GAATGGTACTTGTAAGTGGA+TGG | 0.561504 | tig0042551:+5551 | Msa1462740:CDS |
| GCAAGGAGTAGTGCTAAGAA+AGG | 0.562153 | tig0042551:+5754 | Msa1462740:CDS |
| CCAAGTTCATGACGCGAGGA+AGG | 0.563882 | tig0042551:-5186 | Msa1462740:intergenic |
| TTATCAATGATCACAAGATA+CGG | 0.565478 | tig0042551:-5070 | Msa1462740:intergenic |
| AAAGATACAAGATGGTGCTA+TGG | 0.566971 | tig0042551:+4879 | Msa1462740:CDS |
| CACTGCGTTTGAGCCTCGAA+CGG | 0.567140 | tig0042551:-4733 | Msa1462740:intergenic |
| GTTCAAGCTGTGATCAGTCA+AGG | 0.567298 | tig0042551:+5850 | Msa1462740:CDS |
| CTTCGACCCGAGAGAGGGCA+TGG | 0.567829 | tig0042551:-4298 | Msa1462740:intergenic |
| TGTCATTGCAGAGAAGGCTA+TGG | 0.569419 | tig0042551:+4037 | Msa1462740:CDS |
| CAATTGAGGAGAAGCTTGGA+AGG | 0.570671 | tig0042551:+5308 | Msa1462740:CDS |
| GGATCTTCTCCCTCGTTTCG+GGG | 0.572302 | tig0042551:+5135 | Msa1462740:CDS |
| AAATCATCGTCAACACCACC+AGG | 0.574336 | tig0042551:+3843 | Msa1462740:CDS |
| TATGGATAGGAGGGGAGAGT+AGG | 0.575704 | tig0042551:+4897 | Msa1462740:CDS |
| AAGATGGTGCTATGGATAGG+AGG | 0.577115 | tig0042551:+4887 | Msa1462740:CDS |
| ATGGAGGGTTGAAGCAGGAG+TGG | 0.578790 | tig0042551:+4264 | Msa1462740:CDS |
| GCGACTGTGCACGAATGCAT+TGG | 0.579329 | tig0042551:+6059 | Msa1462740:CDS |
| TGCCAAAGGTCCAAAGGTGG+AGG | 0.581637 | tig0042551:-3439 | Msa1462740:intergenic |
| AAATTCTCGTTACGAGTGAA+AGG | 0.582272 | tig0042551:-4461 | Msa1462740:intergenic |
| ATGAAAGATTGAATTGCAAG+AGG | 0.582620 | tig0042551:-6000 | Msa1462740:intergenic |
| TAAGAGCCTAGCAACAAGAA+TGG | 0.586399 | tig0042551:+5534 | Msa1462740:CDS |
| TGTTCTCAGAGCATCAATCT+CGG | 0.587363 | tig0042551:-5287 | Msa1462740:intergenic |
| TGGAAAGCGAAACTGATTGG+TGG | 0.587808 | tig0042551:+5095 | Msa1462740:CDS |
| ACTACTCTTGCCCCTACCAA+TGG | 0.588157 | tig0042551:-4600 | Msa1462740:intergenic |
| AAGAAATGAAAGTAGTAGGG+AGG | 0.588494 | tig0042551:+4634 | Msa1462740:CDS |
| CATTGCTGCCAAAGGTCCAA+AGG | 0.589320 | tig0042551:-3445 | Msa1462740:intergenic |
| TACAAGATGGTGCTATGGAT+AGG | 0.589655 | tig0042551:+4884 | Msa1462740:CDS |
| CCATTCTTCGACCCGAGAGA+GGG | 0.592544 | tig0042551:-4303 | Msa1462740:intergenic |
| GGAAAGCGAAACTGATTGGT+GGG | 0.593200 | tig0042551:+5096 | Msa1462740:CDS |
| CTTGTTGGAGTTCTTACATG+AGG | 0.593869 | tig0042551:-4012 | Msa1462740:intergenic |
| TTGCTAAAATCCTTAACCTG+TGG | 0.594864 | tig0042551:+5664 | Msa1462740:CDS |
| TCCATTCTTCGACCCGAGAG+AGG | 0.598096 | tig0042551:-4304 | Msa1462740:intergenic |
| AGATGGTGCTATGGATAGGA+GGG | 0.600346 | tig0042551:+4888 | Msa1462740:CDS |
| TTCCACTAGCACAAGTTCAG+TGG | 0.605218 | tig0042551:+3623 | Msa1462740:CDS |
| CTGTCACATTGTTAGCAATG+AGG | 0.606008 | tig0042551:+4372 | Msa1462740:CDS |
| GTGGGATCACAAACTTGTGA+TGG | 0.606105 | tig0042551:+5114 | Msa1462740:CDS |
| ATTTCACCAAAGATACAAGA+TGG | 0.608975 | tig0042551:+4871 | Msa1462740:CDS |
| GAAGAAATTGATCTTGAACC+TGG | 0.609449 | tig0042551:-3861 | Msa1462740:intergenic |
| AAGAAAAGTGTTCTTCCGGA+AGG | 0.610560 | tig0042551:-5461 | Msa1462740:intergenic |
| AGGCATTTGACCATTGGTAG+GGG | 0.611585 | tig0042551:+4590 | Msa1462740:CDS |
| TGAATTCGGTCATAACCCAA+CGG | 0.611965 | tig0042551:+5924 | Msa1462740:CDS |
| ACTGTGTAGTCCTTTCCACT+TGG | 0.612402 | tig0042551:-5262 | Msa1462740:intergenic |
| AACCACTGAACTTGTGCTAG+TGG | 0.612612 | tig0042551:-3625 | Msa1462740:intergenic |
| TGCTGCCAAAGGTCCAAAGG+TGG | 0.618531 | tig0042551:-3442 | Msa1462740:intergenic |
| GCTAGCTCTTGCCAAAGACA+AGG | 0.621668 | tig0042551:-6174 | Msa1462740:intergenic |
| CATTACATACTCTCGATGCA+CGG | 0.622301 | tig0042551:+6020 | Msa1462740:CDS |
| TCTAATGTTACCAAGTGGAA+AGG | 0.624824 | tig0042551:+5252 | Msa1462740:CDS |
| AATAGCAATCATCATAGGGA+TGG | 0.625907 | tig0042551:-3779 | Msa1462740:intergenic |
| AGCTAAGCTTATGCTAAGAG+GGG | 0.632426 | tig0042551:+6227 | Msa1462740:CDS |
| CATTTGGAAAATCTTACAAG+AGG | 0.633450 | tig0042551:-3936 | Msa1462740:intergenic |
| AAAATGTACTATCTCTGATG+TGG | 0.634287 | tig0042551:+3656 | Msa1462740:CDS |
| GCTATTCTGGACAGAAAGAG+AGG | 0.635947 | tig0042551:+3796 | Msa1462740:CDS |
| ATGTCTCTAATGTTACCAAG+TGG | 0.638020 | tig0042551:+5247 | Msa1462740:CDS |
| AGGGATATAATTGAGAAAAG+GGG | 0.638282 | tig0042551:+4200 | Msa1462740:CDS |
| TGGAAGTTGGAAGCTCAGGA+TGG | 0.639529 | tig0042551:+4323 | Msa1462740:CDS |
| TTCAAGCTGTGATCAGTCAA+GGG | 0.645263 | tig0042551:+5851 | Msa1462740:CDS |
| AAATTCCACCAATGATGGCG+AGG | 0.646339 | tig0042551:-5342 | Msa1462740:intergenic |
| ACTCGACCGTATATCTTCCT+CGG | 0.647338 | tig0042551:+3722 | Msa1462740:CDS |
| GATGGTGCTATGGATAGGAG+GGG | 0.647894 | tig0042551:+4889 | Msa1462740:CDS |
| AGCTCTAGTCTCAAGTACTG+TGG | 0.651245 | tig0042551:-6208 | Msa1462740:intergenic |
| GGTTCCAAGTTCATGACGCG+AGG | 0.663662 | tig0042551:-5190 | Msa1462740:intergenic |
| CAGTCGCAAGAGCTCGAGAG+CGG | 0.665433 | tig0042551:-6043 | Msa1462740:intergenic |
| TGACCAAACATTAGTTACAC+CGG | 0.668297 | tig0042551:+6089 | Msa1462740:CDS |
| GATACCGTGAATTTCTAACT+CGG | 0.676357 | tig0042551:-3967 | Msa1462740:intergenic |
| CGTTCGAGGCTCAAACGCAG+TGG | 0.676565 | tig0042551:+4734 | Msa1462740:CDS |
| GACCGTATATCTTCCTCGGT+AGG | 0.682935 | tig0042551:+3726 | Msa1462740:CDS |
| GTGTGGGGAAGTGAAACCAC+AGG | 0.689259 | tig0042551:-5680 | Msa1462740:intergenic |
| GAAATTGATCTTGAACCTGG+TGG | 0.697443 | tig0042551:-3858 | Msa1462740:intergenic |
| GCTACTAGAGATACCTACCG+AGG | 0.736879 | tig0042551:-3739 | Msa1462740:intergenic |
| AAAGTGTTGAGTTTGCTCAG+CGG | 0.754231 | tig0042551:+4705 | Msa1462740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGGAAAGAGAAAATTA+AGG | + | tig0042551:4427-4446 | Msa1462740:CDS | 20.0% |
| !!! | TGTTTTCTGTTATTTGAATT+CGG | + | tig0042551:5910-5929 | Msa1462740:CDS | 20.0% |
| !! | ATGTTTTCATTGGATTACAT+GGG | + | tig0042551:3904-3923 | Msa1462740:CDS | 25.0% |
| ! | TAAGGGATATAATTGAGAAA+AGG | + | tig0042551:4198-4217 | Msa1462740:CDS | 25.0% |
| ! | AAGGGATATAATTGAGAAAA+GGG | + | tig0042551:4199-4218 | Msa1462740:CDS | 25.0% |
| ! | ATGAAAGAAATGAAAGTAGT+AGG | + | tig0042551:4630-4649 | Msa1462740:CDS | 25.0% |
| ! | TGAAAGAAATGAAAGTAGTA+GGG | + | tig0042551:4631-4650 | Msa1462740:CDS | 25.0% |
| ! | TTGGAGAAAACAAGTATAAA+AGG | + | tig0042551:4986-5005 | Msa1462740:CDS | 25.0% |
| ! | TTATCAATGATCACAAGATA+CGG | - | tig0042551:5073-5092 | Msa1462740:intergenic | 25.0% |
| !!! | GATAAGTATGAAAGTTTTAG+CGG | - | tig0042551:5214-5233 | Msa1462740:intergenic | 25.0% |
| ! | CTAAAACTTTCATACTTATC+TGG | + | tig0042551:5214-5233 | Msa1462740:CDS | 25.0% |
| ! | AAGATACCGAAAAAAGATAA+GGG | + | tig0042551:5622-5641 | Msa1462740:CDS | 25.0% |
| !!! | TGCTTCTAATTCAGATTTTT+TGG | - | tig0042551:5707-5726 | Msa1462740:intergenic | 25.0% |
| ! | AATTGAACTCCTGATAAAAA+TGG | - | tig0042551:6289-6308 | Msa1462740:intergenic | 25.0% |
| ! | GAGATAGTACATTTTTGTTC+TGG | - | tig0042551:3651-3670 | Msa1462740:intergenic | 30.0% |
| AAAATGTACTATCTCTGATG+TGG | + | tig0042551:3656-3675 | Msa1462740:CDS | 30.0% | |
| ! | GATGTTTTCATTGGATTACA+TGG | + | tig0042551:3903-3922 | Msa1462740:CDS | 30.0% |
| CATTTGGAAAATCTTACAAG+AGG | - | tig0042551:3939-3958 | Msa1462740:intergenic | 30.0% | |
| ! | CTCTTGTAAGATTTTCCAAA+TGG | + | tig0042551:3937-3956 | Msa1462740:CDS | 30.0% |
| TCCATTTGATTGTCTTGTAA+GGG | + | tig0042551:4181-4200 | Msa1462740:CDS | 30.0% | |
| AGGGATATAATTGAGAAAAG+GGG | + | tig0042551:4200-4219 | Msa1462740:CDS | 30.0% | |
| ! | TTTCCATTTTCTCAAATGCT+CGG | - | tig0042551:4417-4436 | Msa1462740:intergenic | 30.0% |
| GAAAGAGAAAATTAAGGAAG+AGG | + | tig0042551:4433-4452 | Msa1462740:CDS | 30.0% | |
| ! | ACTCGTAACGAGAATTTTAT+CGG | + | tig0042551:4467-4486 | Msa1462740:CDS | 30.0% |
| ! | CAGTTGGAATTTATGCTTTT+TGG | + | tig0042551:4509-4528 | Msa1462740:CDS | 30.0% |
| GCAAGATTATATTGAACTCA+AGG | + | tig0042551:4553-4572 | Msa1462740:CDS | 30.0% | |
| AAGTATAGTAGGAAGAAAAG+AGG | + | tig0042551:4758-4777 | Msa1462740:CDS | 30.0% | |
| ATTTCACCAAAGATACAAGA+TGG | + | tig0042551:4871-4890 | Msa1462740:CDS | 30.0% | |
| ! | TCTTGTGATCATTGATAACT+TGG | + | tig0042551:5075-5094 | Msa1462740:CDS | 30.0% |
| TGATAAAATTCCACCAATGA+TGG | - | tig0042551:5350-5369 | Msa1462740:intergenic | 30.0% | |
| CAAGATACCGAAAAAAGATA+AGG | + | tig0042551:5621-5640 | Msa1462740:CDS | 30.0% | |
| !!! | CAAGTTCCCTTATCTTTTTT+CGG | - | tig0042551:5631-5650 | Msa1462740:intergenic | 30.0% |
| !!! | ATTCAGATTTTTTGGTGTGT+GGG | - | tig0042551:5699-5718 | Msa1462740:intergenic | 30.0% |
| !!! | AATTCAGATTTTTTGGTGTG+TGG | - | tig0042551:5700-5719 | Msa1462740:intergenic | 30.0% |
| GTTTGATGAGTTCATTGAAT+TGG | - | tig0042551:5786-5805 | Msa1462740:intergenic | 30.0% | |
| AACTCATCAAACTATATGCT+AGG | + | tig0042551:5794-5813 | Msa1462740:CDS | 30.0% | |
| CTTGTATCTTGTGAAAAAAG+TGG | + | tig0042551:5972-5991 | Msa1462740:CDS | 30.0% | |
| ATGAAAGATTGAATTGCAAG+AGG | - | tig0042551:6003-6022 | Msa1462740:intergenic | 30.0% | |
| !!! | TCAAGAAAGCCATTTTTATC+AGG | + | tig0042551:6277-6296 | Msa1462740:CDS | 30.0% |
| TTTATCAGGAGTTCAATTTG+TGG | + | tig0042551:6291-6310 | Msa1462740:CDS | 30.0% | |
| ! | ATTCTGTCATTTGAAGCTTC+AGG | - | tig0042551:3576-3595 | Msa1462740:intergenic | 35.0% |
| AATAGCAATCATCATAGGGA+TGG | - | tig0042551:3782-3801 | Msa1462740:intergenic | 35.0% | |
| CCAGAATAGCAATCATCATA+GGG | - | tig0042551:3786-3805 | Msa1462740:intergenic | 35.0% | |
| TCCAGAATAGCAATCATCAT+AGG | - | tig0042551:3787-3806 | Msa1462740:intergenic | 35.0% | |
| GAAGAAATTGATCTTGAACC+TGG | - | tig0042551:3864-3883 | Msa1462740:intergenic | 35.0% | |
| ! | ACGAGTTGTGATGTTTTCAT+TGG | + | tig0042551:3894-3913 | Msa1462740:CDS | 35.0% |
| TTGGAAAATCTTACAAGAGG+AGG | - | tig0042551:3936-3955 | Msa1462740:intergenic | 35.0% | |
| GATACCGTGAATTTCTAACT+CGG | - | tig0042551:3970-3989 | Msa1462740:intergenic | 35.0% | |
| ! | TCAGTTGCTTTGTATCAGAT+AGG | + | tig0042551:3988-4007 | Msa1462740:CDS | 35.0% |
| ! | CAGTTGCTTTGTATCAGATA+GGG | + | tig0042551:3989-4008 | Msa1462740:CDS | 35.0% |
| CAAGAATCCATATACCATTG+AGG | + | tig0042551:4103-4122 | Msa1462740:CDS | 35.0% | |
| GAAAAATTTCAGCTCCTCAA+TGG | - | tig0042551:4120-4139 | Msa1462740:intergenic | 35.0% | |
| TTTCTCCAGCAAGAAGAATT+TGG | + | tig0042551:4136-4155 | Msa1462740:CDS | 35.0% | |
| GACTCAGATCAAAGTATATC+GGG | - | tig0042551:4163-4182 | Msa1462740:intergenic | 35.0% | |
| GGACTCAGATCAAAGTATAT+CGG | - | tig0042551:4164-4183 | Msa1462740:intergenic | 35.0% | |
| GTCCATTTGATTGTCTTGTA+AGG | + | tig0042551:4180-4199 | Msa1462740:CDS | 35.0% | |
| TCCCTTACAAGACAATCAAA+TGG | - | tig0042551:4185-4204 | Msa1462740:intergenic | 35.0% | |
| ACATTGTTAGCAATGAGGTT+AGG | + | tig0042551:4377-4396 | Msa1462740:CDS | 35.0% | |
| AAATTCTCGTTACGAGTGAA+AGG | - | tig0042551:4464-4483 | Msa1462740:intergenic | 35.0% | |
| AAAGAAAGAGCTTTCTCAGT+TGG | + | tig0042551:4493-4512 | Msa1462740:CDS | 35.0% | |
| !!! | ATGCTTTTTGGTGATGTTAC+TGG | + | tig0042551:4521-4540 | Msa1462740:CDS | 35.0% |
| !! | AAAAGAAGGCATTTGACCAT+TGG | + | tig0042551:4584-4603 | Msa1462740:CDS | 35.0% |
| AAGAAATGAAAGTAGTAGGG+AGG | + | tig0042551:4634-4653 | Msa1462740:CDS | 35.0% | |
| !! | AAAGGTATTGCATGTGTATC+AGG | + | tig0042551:4800-4819 | Msa1462740:CDS | 35.0% |
| ATAGCACCATCTTGTATCTT+TGG | - | tig0042551:4880-4899 | Msa1462740:intergenic | 35.0% | |
| ! | AAAGATACAAGATGGTGCTA+TGG | + | tig0042551:4879-4898 | Msa1462740:CDS | 35.0% |
| AGCAAAACTATCTAAACCTC+AGG | + | tig0042551:4927-4946 | Msa1462740:CDS | 35.0% | |
| ! | CAACTTCTAAAAATGACCTG+AGG | - | tig0042551:4946-4965 | Msa1462740:intergenic | 35.0% |
| !! | TGTGAGTGTTGAGAATAGTT+TGG | + | tig0042551:4967-4986 | Msa1462740:CDS | 35.0% |
| ATGTCTCTAATGTTACCAAG+TGG | + | tig0042551:5247-5266 | Msa1462740:CDS | 35.0% | |
| TCTAATGTTACCAAGTGGAA+AGG | + | tig0042551:5252-5271 | Msa1462740:CDS | 35.0% | |
| AAGCTTGGAAGGTTAACTTT+AGG | + | tig0042551:5319-5338 | Msa1462740:CDS | 35.0% | |
| GACTCTTAGATACCATAAAC+AGG | + | tig0042551:5392-5411 | Msa1462740:CDS | 35.0% | |
| ACAAGAATGGTACTTGTAAG+TGG | + | tig0042551:5547-5566 | Msa1462740:CDS | 35.0% | |
| GCTAACAATGAAACTGGAAT+GGG | - | tig0042551:5589-5608 | Msa1462740:intergenic | 35.0% | |
| TGCTAACAATGAAACTGGAA+TGG | - | tig0042551:5590-5609 | Msa1462740:intergenic | 35.0% | |
| ! | AAGATAAGGGAACTTGTTTG+TGG | + | tig0042551:5635-5654 | Msa1462740:CDS | 35.0% |
| TTGCTAAAATCCTTAACCTG+TGG | + | tig0042551:5664-5683 | Msa1462740:CDS | 35.0% | |
| !!! | TTCAGATTTTTTGGTGTGTG+GGG | - | tig0042551:5698-5717 | Msa1462740:intergenic | 35.0% |
| TGCTAAGTTTCAACATTGCA+AGG | + | tig0042551:5737-5756 | Msa1462740:CDS | 35.0% | |
| GCTAGGAAAAGAGAAGTTAT+TGG | + | tig0042551:5811-5830 | Msa1462740:CDS | 35.0% | |
| TATTGGATCTTCACATGCAA+TGG | + | tig0042551:5828-5847 | Msa1462740:CDS | 35.0% | |
| TCAACATCTGGATCATTTGT+GGG | + | tig0042551:5882-5901 | Msa1462740:CDS | 35.0% | |
| TGACCAAACATTAGTTACAC+CGG | + | tig0042551:6089-6108 | Msa1462740:CDS | 35.0% | |
| ! | CAACTGAGCATTAGTTTGAA+TGG | - | tig0042551:6151-6170 | Msa1462740:intergenic | 35.0% |
| ! | AATTTGTGGTGATGATCATC+CGG | + | tig0042551:6305-6324 | Msa1462740:CDS | 35.0% |
| CTTAAACTCATTGCTGCCAA+AGG | - | tig0042551:3456-3475 | Msa1462740:intergenic | 40.0% | |
| CTTTGGCAGCAATGAGTTTA+AGG | + | tig0042551:3454-3473 | Msa1462740:CDS | 40.0% | |
| GAATATGTCTTCGTCGTCTT+CGG | + | tig0042551:3476-3495 | Msa1462740:CDS | 40.0% | |
| AGAGAAAAACGGTGACTGAT+TGG | - | tig0042551:3514-3533 | Msa1462740:intergenic | 40.0% | |
| GACGTTCTTGGAGAGAAAAA+CGG | - | tig0042551:3525-3544 | Msa1462740:intergenic | 40.0% | |
| TACCTACCGAGGAAGATATA+CGG | - | tig0042551:3731-3750 | Msa1462740:intergenic | 40.0% | |
| ATCTCTAGTAGCACCATATC+TGG | + | tig0042551:3750-3769 | Msa1462740:CDS | 40.0% | |
| ! | CCCTATGATGATTGCTATTC+TGG | + | tig0042551:3783-3802 | Msa1462740:CDS | 40.0% |
| AAAGAGAGGCGAAGTAAGAA+AGG | + | tig0042551:3810-3829 | Msa1462740:CDS | 40.0% | |
| !!! | GTGGTGTTGACGATGATTTT+TGG | - | tig0042551:3842-3861 | Msa1462740:intergenic | 40.0% |
| GAAATTGATCTTGAACCTGG+TGG | - | tig0042551:3861-3880 | Msa1462740:intergenic | 40.0% | |
| TGTGCCGAGTTAGAAATTCA+CGG | + | tig0042551:3963-3982 | Msa1462740:CDS | 40.0% | |
| CTTGTTGGAGTTCTTACATG+AGG | - | tig0042551:4015-4034 | Msa1462740:intergenic | 40.0% | |
| TTCAGCTCCTCAATGGTATA+TGG | - | tig0042551:4113-4132 | Msa1462740:intergenic | 40.0% | |
| AAAAACATGGAGGAGAACTC+TGG | + | tig0042551:4234-4253 | Msa1462740:CDS | 40.0% | |
| !!! | AACTCTGGCTTTTGTATGGA+GGG | + | tig0042551:4249-4268 | Msa1462740:CDS | 40.0% |
| CTGTCACATTGTTAGCAATG+AGG | + | tig0042551:4372-4391 | Msa1462740:CDS | 40.0% | |
| TCAAGGCAAGATCGAAAAGA+AGG | + | tig0042551:4570-4589 | Msa1462740:CDS | 40.0% | |
| ! | AAGGCATTTGACCATTGGTA+GGG | + | tig0042551:4589-4608 | Msa1462740:CDS | 40.0% |
| ! | AGGAGAAAGAACCAGTTTTG+TGG | + | tig0042551:4654-4673 | Msa1462740:CDS | 40.0% |
| !! | GAAAGAACCAGTTTTGTGGA+AGG | + | tig0042551:4658-4677 | Msa1462740:CDS | 40.0% |
| !! | AAAGTGTTGAGTTTGCTCAG+CGG | + | tig0042551:4705-4724 | Msa1462740:CDS | 40.0% |
| AACGCAGTGGTAAGTATAGT+AGG | + | tig0042551:4747-4766 | Msa1462740:CDS | 40.0% | |
| TAGGAAGAAAAGAGGAGTGA+AGG | + | tig0042551:4766-4785 | Msa1462740:CDS | 40.0% | |
| !! | AGAGGAGTGAAGGTTTTGTA+TGG | + | tig0042551:4776-4795 | Msa1462740:CDS | 40.0% |
| !! | GAGGAGTGAAGGTTTTGTAT+GGG | + | tig0042551:4777-4796 | Msa1462740:CDS | 40.0% |
| !! | GTGAAGGTTTTGTATGGGAA+AGG | + | tig0042551:4782-4801 | Msa1462740:CDS | 40.0% |
| GTATCAGGAGATTCAGGAAT+TGG | + | tig0042551:4815-4834 | Msa1462740:CDS | 40.0% | |
| !! | TACAAGATGGTGCTATGGAT+AGG | + | tig0042551:4884-4903 | Msa1462740:CDS | 40.0% |
| ACTTGGAAAGCGAAACTGAT+TGG | + | tig0042551:5092-5111 | Msa1462740:CDS | 40.0% | |
| ! | TGTTCTCAGAGCATCAATCT+CGG | - | tig0042551:5290-5309 | Msa1462740:intergenic | 40.0% |
| !! | TGATGCTCTGAGAACAATTG+AGG | + | tig0042551:5294-5313 | Msa1462740:CDS | 40.0% |
| AGAACAATTGAGGAGAAGCT+TGG | + | tig0042551:5304-5323 | Msa1462740:CDS | 40.0% | |
| !! | AAGAGTCTGCTTGGTGTTAT+AGG | - | tig0042551:5379-5398 | Msa1462740:intergenic | 40.0% |
| ATGGTATCTAAGAGTCTGCT+TGG | - | tig0042551:5388-5407 | Msa1462740:intergenic | 40.0% | |
| CATGAAGACATCTCCTTCAA+GGG | - | tig0042551:5421-5440 | Msa1462740:intergenic | 40.0% | |
| !! | AAGAAAAGTGTTCTTCCGGA+AGG | - | tig0042551:5464-5483 | Msa1462740:intergenic | 40.0% |
| !! | GCAGAAGAAAAGTGTTCTTC+CGG | - | tig0042551:5468-5487 | Msa1462740:intergenic | 40.0% |
| ! | GCTCTTCGATGTTTGTTTCT+CGG | + | tig0042551:5489-5508 | Msa1462740:CDS | 40.0% |
| TTCTTGTTGCTAGGCTCTTA+GGG | - | tig0042551:5534-5553 | Msa1462740:intergenic | 40.0% | |
| ATTCTTGTTGCTAGGCTCTT+AGG | - | tig0042551:5535-5554 | Msa1462740:intergenic | 40.0% | |
| TAAGAGCCTAGCAACAAGAA+TGG | + | tig0042551:5534-5553 | Msa1462740:CDS | 40.0% | |
| CAAGTACCATTCTTGTTGCT+AGG | - | tig0042551:5543-5562 | Msa1462740:intergenic | 40.0% | |
| GAATGGTACTTGTAAGTGGA+TGG | + | tig0042551:5551-5570 | Msa1462740:CDS | 40.0% | |
| GCAAGTGCTAACAATGAAAC+TGG | - | tig0042551:5595-5614 | Msa1462740:intergenic | 40.0% | |
| TTCAAGCTGTGATCAGTCAA+GGG | + | tig0042551:5851-5870 | Msa1462740:CDS | 40.0% | |
| AGGGTCAATATCTCAACATC+TGG | + | tig0042551:5870-5889 | Msa1462740:CDS | 40.0% | |
| CTCAACATCTGGATCATTTG+TGG | + | tig0042551:5881-5900 | Msa1462740:CDS | 40.0% | |
| TGAATTCGGTCATAACCCAA+CGG | + | tig0042551:5924-5943 | Msa1462740:CDS | 40.0% | |
| CATTACATACTCTCGATGCA+CGG | + | tig0042551:6020-6039 | Msa1462740:CDS | 40.0% | |
| CTCAGTTGAATCCTTGTCTT+TGG | + | tig0042551:6163-6182 | Msa1462740:CDS | 40.0% | |
| AGAGCTAAGCTTATGCTAAG+AGG | + | tig0042551:6225-6244 | Msa1462740:CDS | 40.0% | |
| GAGCTAAGCTTATGCTAAGA+GGG | + | tig0042551:6226-6245 | Msa1462740:CDS | 40.0% | |
| AGCTAAGCTTATGCTAAGAG+GGG | + | tig0042551:6227-6246 | Msa1462740:CDS | 40.0% | |
| ! | AGAGGGGCACAATTTGATAT+AGG | + | tig0042551:6243-6262 | Msa1462740:CDS | 40.0% |
| ! | GAGGGGCACAATTTGATATA+GGG | + | tig0042551:6244-6263 | Msa1462740:CDS | 40.0% |
| TCGCGAGCAAATATAGTATC+CGG | - | tig0042551:6327-6346 | Msa1462740:intergenic | 40.0% | |
| GAAGAAAGTTCCTCCACCTT+TGG | + | tig0042551:3429-3448 | Msa1462740:CDS | 45.0% | |
| AAATGACACGACGACGTTCT+TGG | - | tig0042551:3537-3556 | Msa1462740:intergenic | 45.0% | |
| TTCCACTAGCACAAGTTCAG+TGG | + | tig0042551:3623-3642 | Msa1462740:CDS | 45.0% | |
| AACCACTGAACTTGTGCTAG+TGG | - | tig0042551:3628-3647 | Msa1462740:intergenic | 45.0% | |
| CTGCATATCACCTGAAGTAC+AGG | - | tig0042551:3700-3719 | Msa1462740:intergenic | 45.0% | |
| ACTCGACCGTATATCTTCCT+CGG | + | tig0042551:3722-3741 | Msa1462740:CDS | 45.0% | |
| GCTATTCTGGACAGAAAGAG+AGG | + | tig0042551:3796-3815 | Msa1462740:CDS | 45.0% | |
| AAATCATCGTCAACACCACC+AGG | + | tig0042551:3843-3862 | Msa1462740:CDS | 45.0% | |
| TAACTCGGCACACAACCATT+TGG | - | tig0042551:3955-3974 | Msa1462740:intergenic | 45.0% | |
| CTCTGCAATGACAAGCTTGT+TGG | - | tig0042551:4030-4049 | Msa1462740:intergenic | 45.0% | |
| CAAGCTTGTCATTGCAGAGA+AGG | + | tig0042551:4031-4050 | Msa1462740:CDS | 45.0% | |
| TGTCATTGCAGAGAAGGCTA+TGG | + | tig0042551:4037-4056 | Msa1462740:CDS | 45.0% | |
| GCTATGGACGTTGCTTCTTT+CGG | + | tig0042551:4053-4072 | Msa1462740:CDS | 45.0% | |
| TTGAGAAAAGGGGTGAGTTG+TGG | + | tig0042551:4210-4229 | Msa1462740:CDS | 45.0% | |
| TGAGAAAAGGGGTGAGTTGT+GGG | + | tig0042551:4211-4230 | Msa1462740:CDS | 45.0% | |
| GGTGAGTTGTGGGAAAAACA+TGG | + | tig0042551:4221-4240 | Msa1462740:CDS | 45.0% | |
| GAGTTGTGGGAAAAACATGG+AGG | + | tig0042551:4224-4243 | Msa1462740:CDS | 45.0% | |
| !!! | GGAGAACTCTGGCTTTTGTA+TGG | + | tig0042551:4245-4264 | Msa1462740:CDS | 45.0% |
| !!! | GAACTCTGGCTTTTGTATGG+AGG | + | tig0042551:4248-4267 | Msa1462740:CDS | 45.0% |
| TTTGTATGGAGGGTTGAAGC+AGG | + | tig0042551:4259-4278 | Msa1462740:CDS | 45.0% | |
| AGAATGGAAGTTGGAAGCTC+AGG | + | tig0042551:4319-4338 | Msa1462740:CDS | 45.0% | |
| TCGCCGAGCATTTGAGAAAA+TGG | + | tig0042551:4411-4430 | Msa1462740:CDS | 45.0% | |
| !! | GAAGGCATTTGACCATTGGT+AGG | + | tig0042551:4588-4607 | Msa1462740:CDS | 45.0% |
| AGGCATTTGACCATTGGTAG+GGG | + | tig0042551:4590-4609 | Msa1462740:CDS | 45.0% | |
| TCTGACTCCTTCCACAAAAC+TGG | - | tig0042551:4668-4687 | Msa1462740:intergenic | 45.0% | |
| GCATGTGTATCAGGAGATTC+AGG | + | tig0042551:4809-4828 | Msa1462740:CDS | 45.0% | |
| !! | AAGATGGTGCTATGGATAGG+AGG | + | tig0042551:4887-4906 | Msa1462740:CDS | 45.0% |
| !! | AGATGGTGCTATGGATAGGA+GGG | + | tig0042551:4888-4907 | Msa1462740:CDS | 45.0% |
| TGGAAAGCGAAACTGATTGG+TGG | + | tig0042551:5095-5114 | Msa1462740:CDS | 45.0% | |
| GGAAAGCGAAACTGATTGGT+GGG | + | tig0042551:5096-5115 | Msa1462740:CDS | 45.0% | |
| GTGGGATCACAAACTTGTGA+TGG | + | tig0042551:5114-5133 | Msa1462740:CDS | 45.0% | |
| ATGGATCTTCTCCCTCGTTT+CGG | + | tig0042551:5133-5152 | Msa1462740:CDS | 45.0% | |
| ACTGTGTAGTCCTTTCCACT+TGG | - | tig0042551:5265-5284 | Msa1462740:intergenic | 45.0% | |
| CAATTGAGGAGAAGCTTGGA+AGG | + | tig0042551:5308-5327 | Msa1462740:CDS | 45.0% | |
| ! | AAATTCCACCAATGATGGCG+AGG | - | tig0042551:5345-5364 | Msa1462740:intergenic | 45.0% |
| !! | CTTCAAGGGCATCCTGTTTA+TGG | - | tig0042551:5407-5426 | Msa1462740:intergenic | 45.0% |
| CATAAACAGGATGCCCTTGA+AGG | + | tig0042551:5405-5424 | Msa1462740:CDS | 45.0% | |
| CCATGAAGACATCTCCTTCA+AGG | - | tig0042551:5422-5441 | Msa1462740:intergenic | 45.0% | |
| CCTTGAAGGAGATGTCTTCA+TGG | + | tig0042551:5419-5438 | Msa1462740:CDS | 45.0% | |
| TCGGTATTTGATCACGCAGA+CGG | + | tig0042551:5508-5527 | Msa1462740:CDS | 45.0% | |
| CAATGAAACTGGAATGGGAC+TGG | - | tig0042551:5584-5603 | Msa1462740:intergenic | 45.0% | |
| GGAAGTGAAACCACAGGTTA+AGG | - | tig0042551:5677-5696 | Msa1462740:intergenic | 45.0% | |
| GCAAGGAGTAGTGCTAAGAA+AGG | + | tig0042551:5754-5773 | Msa1462740:CDS | 45.0% | |
| GTTCAAGCTGTGATCAGTCA+AGG | + | tig0042551:5850-5869 | Msa1462740:CDS | 45.0% | |
| CGACCGGTGTAACTAATGTT+TGG | - | tig0042551:6095-6114 | Msa1462740:intergenic | 45.0% | |
| TAGTTACACCGGTCGATAAG+TGG | + | tig0042551:6100-6119 | Msa1462740:CDS | 45.0% | |
| TTGTCGAACCACTTATCGAC+CGG | - | tig0042551:6111-6130 | Msa1462740:intergenic | 45.0% | |
| GGTTCGACAAATCACTCTGT+TGG | + | tig0042551:6121-6140 | Msa1462740:CDS | 45.0% | |
| ! | AGCTCTAGTCTCAAGTACTG+TGG | - | tig0042551:6211-6230 | Msa1462740:intergenic | 45.0% |
| TTCCTCCACCTTTGGACCTT+TGG | + | tig0042551:3437-3456 | Msa1462740:CDS | 50.0% | |
| CATTGCTGCCAAAGGTCCAA+AGG | - | tig0042551:3448-3467 | Msa1462740:intergenic | 50.0% | |
| GACCGTATATCTTCCTCGGT+AGG | + | tig0042551:3726-3745 | Msa1462740:CDS | 50.0% | |
| GCTACTAGAGATACCTACCG+AGG | - | tig0042551:3742-3761 | Msa1462740:intergenic | 50.0% | |
| GGGATGGCAGTAACCAGATA+TGG | - | tig0042551:3766-3785 | Msa1462740:intergenic | 50.0% | |
| CGGGACCAAATTCTTCTTGC+TGG | - | tig0042551:4144-4163 | Msa1462740:intergenic | 50.0% | |
| TCGGGTCGAAGAATGGAAGT+TGG | + | tig0042551:4310-4329 | Msa1462740:CDS | 50.0% | |
| TGGAAGTTGGAAGCTCAGGA+TGG | + | tig0042551:4323-4342 | Msa1462740:CDS | 50.0% | |
| TGGAAGCTCAGGATGGAAAC+TGG | + | tig0042551:4330-4349 | Msa1462740:CDS | 50.0% | |
| AATGCTCGGCGACACTTCTT+CGG | - | tig0042551:4403-4422 | Msa1462740:intergenic | 50.0% | |
| ACTACTCTTGCCCCTACCAA+TGG | - | tig0042551:4603-4622 | Msa1462740:intergenic | 50.0% | |
| !! | GATGGTGCTATGGATAGGAG+GGG | + | tig0042551:4889-4908 | Msa1462740:CDS | 50.0% |
| TATGGATAGGAGGGGAGAGT+AGG | + | tig0042551:4897-4916 | Msa1462740:CDS | 50.0% | |
| TGGATCTTCTCCCTCGTTTC+GGG | + | tig0042551:5134-5153 | Msa1462740:CDS | 50.0% | |
| ACTTTAGGCCTCGCCATCAT+TGG | + | tig0042551:5334-5353 | Msa1462740:CDS | 50.0% | |
| GTAAAGAAGCTCACGCCTTC+CGG | + | tig0042551:5446-5465 | Msa1462740:CDS | 50.0% | |
| ! | GCTAGCTCTTGCCAAAGACA+AGG | - | tig0042551:6177-6196 | Msa1462740:intergenic | 50.0% |
| TGCCAAAGGTCCAAAGGTGG+AGG | - | tig0042551:3442-3461 | Msa1462740:intergenic | 55.0% | |
| TGCTGCCAAAGGTCCAAAGG+TGG | - | tig0042551:3445-3464 | Msa1462740:intergenic | 55.0% | |
| TCTCCAGCTGCCTGTACTTC+AGG | + | tig0042551:3687-3706 | Msa1462740:CDS | 55.0% | |
| TCACCTGAAGTACAGGCAGC+TGG | - | tig0042551:3693-3712 | Msa1462740:intergenic | 55.0% | |
| ATGGAGGGTTGAAGCAGGAG+TGG | + | tig0042551:4264-4283 | Msa1462740:CDS | 55.0% | |
| ATGCTGTCCATGCCCTCTCT+CGG | + | tig0042551:4291-4310 | Msa1462740:CDS | 55.0% | |
| CCATTCTTCGACCCGAGAGA+GGG | - | tig0042551:4306-4325 | Msa1462740:intergenic | 55.0% | |
| TCCATTCTTCGACCCGAGAG+AGG | - | tig0042551:4307-4326 | Msa1462740:intergenic | 55.0% | |
| CACTGCGTTTGAGCCTCGAA+CGG | - | tig0042551:4736-4755 | Msa1462740:intergenic | 55.0% | |
| GGATCTTCTCCCTCGTTTCG+GGG | + | tig0042551:5135-5154 | Msa1462740:CDS | 55.0% | |
| GATCTTCTCCCTCGTTTCGG+GGG | + | tig0042551:5136-5155 | Msa1462740:CDS | 55.0% | |
| CCAAGTTCATGACGCGAGGA+AGG | - | tig0042551:5189-5208 | Msa1462740:intergenic | 55.0% | |
| CCTTCCTCGCGTCATGAACT+TGG | + | tig0042551:5186-5205 | Msa1462740:CDS | 55.0% | |
| GGTTCCAAGTTCATGACGCG+AGG | - | tig0042551:5193-5212 | Msa1462740:intergenic | 55.0% | |
| TTAGGCCTCGCCATCATTGG+TGG | + | tig0042551:5337-5356 | Msa1462740:CDS | 55.0% | |
| GTGTGGGGAAGTGAAACCAC+AGG | - | tig0042551:5683-5702 | Msa1462740:intergenic | 55.0% | |
| GCGACTGTGCACGAATGCAT+TGG | + | tig0042551:6059-6078 | Msa1462740:CDS | 55.0% | |
| TGCTGTCCATGCCCTCTCTC+GGG | + | tig0042551:4292-4311 | Msa1462740:CDS | 60.0% | |
| CCCTCTCTCGGGTCGAAGAA+TGG | + | tig0042551:4303-4322 | Msa1462740:CDS | 60.0% | |
| CGTTCGAGGCTCAAACGCAG+TGG | + | tig0042551:4734-4753 | Msa1462740:CDS | 60.0% | |
| GAGTCTCTCCCCCGAAACGA+GGG | - | tig0042551:5147-5166 | Msa1462740:intergenic | 60.0% | |
| TGAGTCTCTCCCCCGAAACG+AGG | - | tig0042551:5148-5167 | Msa1462740:intergenic | 60.0% | |
| CCTCGAGCTCGACAACCGTT+GGG | - | tig0042551:5942-5961 | Msa1462740:intergenic | 60.0% | |
| ACCTCGAGCTCGACAACCGT+TGG | - | tig0042551:5943-5962 | Msa1462740:intergenic | 60.0% | |
| CAGTCGCAAGAGCTCGAGAG+CGG | - | tig0042551:6046-6065 | Msa1462740:intergenic | 60.0% | |
| CTTCGACCCGAGAGAGGGCA+TGG | - | tig0042551:4301-4320 | Msa1462740:intergenic | 65.0% | |
| CTCAGCGGCACTACCGTTCG+AGG | + | tig0042551:4720-4739 | Msa1462740:CDS | 65.0% | |
| CCCAACGGTTGTCGAGCTCG+AGG | + | tig0042551:5939-5958 | Msa1462740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042551 | gene | 3417 | 6398 | 3417 | ID=Msa1462740;Name=Msa1462740 |
| tig0042551 | mRNA | 3417 | 6398 | 3417 | ID=Msa1462740-mRNA-1;Parent=Msa1462740;Name=Msa1462740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|993 |
| tig0042551 | exon | 3417 | 6398 | 3417 | ID=Msa1462740-mRNA-1:exon:23784;Parent=Msa1462740-mRNA-1 |
| tig0042551 | CDS | 3417 | 6398 | 3417 | ID=Msa1462740-mRNA-1:cds;Parent=Msa1462740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
