Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368640 | ABY76166.1 | 99.025 | 718 | 4 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368640 | sp|O04015|P5CS_ACTDE | 78.691 | 718 | 150 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368640 | B0LSX0 | 99.025 | 718 | 4 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa0368640 | 0.811065 | 8.434473e-51 | -8.615850e-47 |
| Msa0031120 | Msa0368640 | 0.809663 | 1.692907e-50 | -8.615850e-47 |
| Msa0035730 | Msa0368640 | 0.849335 | 3.454607e-60 | -8.615850e-47 |
| Msa0073210 | Msa0368640 | 0.804301 | 2.307420e-49 | -8.615850e-47 |
| Msa0089940 | Msa0368640 | 0.823174 | 1.596826e-53 | -8.615850e-47 |
| Msa0173250 | Msa0368640 | 0.809670 | 1.687395e-50 | -8.615850e-47 |
| Msa0192050 | Msa0368640 | 0.808563 | 2.913187e-50 | -8.615850e-47 |
| Msa0195230 | Msa0368640 | 0.857492 | 1.572729e-62 | -8.615850e-47 |
| Msa0195260 | Msa0368640 | 0.856257 | 3.634507e-62 | -8.615850e-47 |
| Msa0204950 | Msa0368640 | 0.800598 | 1.337121e-48 | -8.615850e-47 |
| Msa0234170 | Msa0368640 | 0.811121 | 8.204402e-51 | -8.615850e-47 |
| Msa0236940 | Msa0368640 | 0.810435 | 1.154168e-50 | -8.615850e-47 |
| Msa0368640 | Msa0389690 | 0.933668 | 1.320459e-95 | -8.615850e-47 |
| Msa0368640 | Msa0416020 | 0.883728 | 3.508738e-71 | -8.615850e-47 |
| Msa0368640 | Msa0427420 | 0.832072 | 1.164789e-55 | -8.615850e-47 |
| Msa0368640 | Msa0427480 | 0.827768 | 1.303569e-54 | -8.615850e-47 |
| Msa0368640 | Msa0437500 | 0.811302 | 7.493153e-51 | -8.615850e-47 |
| Msa0368640 | Msa0477480 | 0.802534 | 5.360306e-49 | -8.615850e-47 |
| Msa0368640 | Msa0480280 | 0.968696 | 4.791263e-129 | -8.615850e-47 |
| Msa0368640 | Msa0484210 | -0.830233 | 3.296228e-55 | -8.615850e-47 |
| Msa0368640 | Msa0506750 | 0.802115 | 6.537085e-49 | -8.615850e-47 |
| Msa0368640 | Msa0508180 | 0.883971 | 2.854203e-71 | -8.615850e-47 |
| Msa0368640 | Msa0521510 | 0.810948 | 8.939907e-51 | -8.615850e-47 |
| Msa0368640 | Msa0521530 | 0.810673 | 1.025482e-50 | -8.615850e-47 |
| Msa0368640 | Msa0540670 | 0.808078 | 3.696187e-50 | -8.615850e-47 |
| Msa0368640 | Msa0605530 | 0.804274 | 2.336872e-49 | -8.615850e-47 |
| Msa0368640 | Msa0618990 | 0.810775 | 9.744923e-51 | -8.615850e-47 |
| Msa0368640 | Msa0619750 | 0.806385 | 8.441466e-50 | -8.615850e-47 |
| Msa0368640 | Msa0621320 | 0.815136 | 1.078829e-51 | -8.615850e-47 |
| Msa0368640 | Msa0630440 | 0.822418 | 2.394496e-53 | -8.615850e-47 |
| Msa0368640 | Msa0656320 | 0.827642 | 1.397423e-54 | -8.615850e-47 |
| Msa0368640 | Msa0689830 | 0.860557 | 1.901293e-63 | -8.615850e-47 |
| Msa0368640 | Msa0700120 | 0.857283 | 1.813386e-62 | -8.615850e-47 |
| Msa0368640 | Msa0707260 | 0.819740 | 9.911818e-53 | -8.615850e-47 |
| Msa0368640 | Msa0707360 | 0.819579 | 1.078485e-52 | -8.615850e-47 |
| Msa0368640 | Msa0799450 | 0.827954 | 1.175875e-54 | -8.615850e-47 |
| Msa0368640 | Msa0827370 | 0.801369 | 9.303874e-49 | -8.615850e-47 |
| Msa0368640 | Msa0837710 | 0.826370 | 2.815464e-54 | -8.615850e-47 |
| Msa0368640 | Msa0838620 | -0.827344 | 1.648165e-54 | -8.615850e-47 |
| Msa0368640 | Msa0846900 | 0.805976 | 1.029326e-49 | -8.615850e-47 |
| Msa0368640 | Msa0926240 | 0.808050 | 3.746733e-50 | -8.615850e-47 |
| Msa0368640 | Msa0930770 | 0.849636 | 2.847556e-60 | -8.615850e-47 |
| Msa0368640 | Msa0981670 | 0.830820 | 2.368175e-55 | -8.615850e-47 |
| Msa0368640 | Msa1041170 | 0.809843 | 1.548259e-50 | -8.615850e-47 |
| Msa0368640 | Msa1078830 | 0.812555 | 3.997040e-51 | -8.615850e-47 |
| Msa0368640 | Msa1124210 | 0.863698 | 2.067461e-64 | -8.615850e-47 |
| Msa0368640 | Msa1210040 | 0.813777 | 2.155878e-51 | -8.615850e-47 |
| Msa0368640 | Msa1220580 | 0.822841 | 1.908908e-53 | -8.615850e-47 |
| Msa0368640 | Msa1226370 | 0.800919 | 1.149696e-48 | -8.615850e-47 |
| Msa0368640 | Msa1259160 | 0.829576 | 4.766285e-55 | -8.615850e-47 |
| Msa0368640 | Msa1299650 | 0.829870 | 4.040610e-55 | -8.615850e-47 |
| Msa0368640 | Msa1334560 | 0.818793 | 1.628276e-52 | -8.615850e-47 |
| Msa0368640 | Msa1361990 | 0.809250 | 2.076068e-50 | -8.615850e-47 |
| Msa0368640 | Msa1396100 | 0.853611 | 2.131526e-61 | -8.615850e-47 |
| Msa0368640 | Msa1400850 | 0.821427 | 4.062005e-53 | -8.615850e-47 |
| Msa0368640 | Msa1402010 | 0.811422 | 7.058882e-51 | -8.615850e-47 |
| Msa0368640 | Msa1406090 | 0.811520 | 6.720408e-51 | -8.615850e-47 |
| Msa0368640 | Msa1449780 | 0.801120 | 1.045758e-48 | -8.615850e-47 |
| Msa0368640 | Msa1449920 | 0.803935 | 2.748765e-49 | -8.615850e-47 |
| Msa0368640 | Msa1458790 | 0.819040 | 1.430756e-52 | -8.615850e-47 |
| Msa0368640 | Msa1462740 | 0.804476 | 2.121346e-49 | -8.615850e-47 |
| Msa0368640 | Msa1462780 | 0.803555 | 3.296716e-49 | -8.615850e-47 |
| Msa0276860 | Msa0368640 | 0.824464 | 7.956711e-54 | -8.615850e-47 |
| Msa0279000 | Msa0368640 | 0.838659 | 2.521273e-57 | -8.615850e-47 |
| Msa0320600 | Msa0368640 | 0.804872 | 1.753234e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368640 | MtrunA17_Chr3g0112411 | 97.354 | 718 | 16 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1410 |
| Msa0368640 | MtrunA17_Chr4g0008951 | 75.664 | 715 | 170 | 2 | 1 | 715 | 41 | 751 | 0.0 | 1098 |
| Msa0368640 | MtrunA17_Chr7g0239721 | 74.266 | 715 | 178 | 2 | 5 | 716 | 2 | 713 | 0.0 | 1067 |
| Msa0368640 | MtrunA17_Chr4g0053671 | 47.619 | 105 | 52 | 2 | 564 | 667 | 46 | 148 | 4.91e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368640 | AT3G55610.1 | 75.140 | 716 | 175 | 1 | 1 | 716 | 1 | 713 | 0.0 | 1078 |
| Msa0368640 | AT2G39800.1 | 74.860 | 716 | 177 | 1 | 1 | 716 | 1 | 713 | 0.0 | 1066 |
| Msa0368640 | AT2G39800.4 | 74.860 | 716 | 177 | 1 | 1 | 716 | 1 | 713 | 0.0 | 1066 |
| Msa0368640 | AT2G39800.3 | 74.441 | 716 | 177 | 2 | 1 | 716 | 1 | 710 | 0.0 | 1053 |
| Msa0368640 | AT3G55610.2 | 73.718 | 624 | 161 | 1 | 1 | 624 | 1 | 621 | 0.0 | 912 |
| Msa0368640 | AT2G39800.2 | 74.715 | 613 | 152 | 1 | 104 | 716 | 1 | 610 | 0.0 | 907 |
Find 174 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTTATGTGCATCTTTA+TGG | 0.086165 | 3_1:+65446817 | None:intergenic |
| TGTTGATAAATCTGCTAATT+TGG | 0.147585 | 3_1:-65444882 | Msa0368640:CDS |
| ATTCATCATATAAATCTTTA+TGG | 0.156682 | 3_1:-65444349 | Msa0368640:CDS |
| AGGATTCTTCTGGCATATTT+TGG | 0.157564 | 3_1:-65447453 | Msa0368640:CDS |
| AGGTTAGCAGTTGGAAAATT+AGG | 0.157979 | 3_1:-65448635 | Msa0368640:CDS |
| TCTTGGTTATGAAGTTATTT+TGG | 0.185023 | 3_1:-65448484 | Msa0368640:CDS |
| GCTTGCAGAGGGGTTAATTT+TGG | 0.208579 | 3_1:-65445913 | Msa0368640:CDS |
| CCTTCCCAACATTAGGAAAT+TGG | 0.215317 | 3_1:-65442898 | Msa0368640:three_prime_UTR |
| CATCAAAATGAAATTACTTT+TGG | 0.217780 | 3_1:-65447289 | Msa0368640:CDS |
| TATGTAGGTGTTACTTTATA+TGG | 0.224316 | 3_1:-65444481 | Msa0368640:intron |
| ACTGTTGGTTCAAAACTTAT+TGG | 0.234157 | 3_1:-65445285 | Msa0368640:CDS |
| ATTAAGGAGCTTAACATTCT+TGG | 0.257244 | 3_1:-65448501 | Msa0368640:CDS |
| CATAGAAACAAAAGTGAAAT+TGG | 0.260849 | 3_1:-65448960 | None:intergenic |
| TTTCTTCTGTGTTCAGAGTT+AGG | 0.265122 | 3_1:-65443017 | Msa0368640:three_prime_UTR |
| GGAGAAAACGTCATCTCCTT+TGG | 0.317664 | 3_1:-65445892 | Msa0368640:CDS |
| GGTTAGCAGTTGGAAAATTA+GGG | 0.319239 | 3_1:-65448634 | Msa0368640:CDS |
| CATGTTTCCTTCCCAACATT+AGG | 0.319769 | 3_1:-65442905 | Msa0368640:three_prime_UTR |
| AAACTGAACTTTGTGCAAAA+TGG | 0.325995 | 3_1:+65445421 | None:intergenic |
| GGACTGTTCCAGACGGCTTC+AGG | 0.330973 | 3_1:-65446748 | Msa0368640:intron |
| GCGTCGTTCTCATTGAATAT+TGG | 0.334868 | 3_1:+65447806 | None:intergenic |
| AAAGTTGCTTTCTAAAATCT+TGG | 0.335431 | 3_1:+65447867 | None:intergenic |
| TCGGTTTGGTGGAGAGAAAC+AGG | 0.341522 | 3_1:+65448885 | None:intergenic |
| TTTATCAGCTTTGTTGGCCT+TGG | 0.347250 | 3_1:-65447419 | Msa0368640:CDS |
| TGACAGTTTATCAGCTTTGT+TGG | 0.347433 | 3_1:-65447425 | Msa0368640:CDS |
| TTCAGCGATGGAGCACGATT+TGG | 0.347554 | 3_1:-65443900 | Msa0368640:CDS |
| TACGTTACAGGCCGTGTCTT+CGG | 0.359125 | 3_1:-65446625 | Msa0368640:intron |
| TCGACGAAAATCCCTGTTCT+AGG | 0.362437 | 3_1:-65445050 | Msa0368640:CDS |
| GGAAACACTTCTTGTTCATA+AGG | 0.364819 | 3_1:-65444711 | Msa0368640:CDS |
| ACTTCTTGTTCATAAGGATT+TGG | 0.368512 | 3_1:-65444705 | Msa0368640:CDS |
| TCATCAGGTGCTGTTGGCCT+CGG | 0.390092 | 3_1:-65448459 | Msa0368640:CDS |
| GGGTCGGCGTTCGCCATCTT+CGG | 0.394626 | 3_1:+65448866 | None:intergenic |
| AAAATCCTTGGTTGCTAGGC+TGG | 0.395053 | 3_1:-65446490 | Msa0368640:CDS |
| TTATGATGATTTGTTTAGTC+AGG | 0.400090 | 3_1:-65448091 | Msa0368640:intron |
| ATCACCAATTTCCTAATGTT+GGG | 0.401712 | 3_1:+65442894 | None:intergenic |
| CACAAGCAGGATTCATGCTC+GGG | 0.402561 | 3_1:-65443761 | Msa0368640:CDS |
| GGTAATGATAACAGGAATTC+CGG | 0.408004 | 3_1:+65447198 | None:intergenic |
| GAGAAAACGTCATCTCCTTT+GGG | 0.408409 | 3_1:-65445891 | Msa0368640:CDS |
| TTCAACAGAGAACTTGCTTT+CGG | 0.414727 | 3_1:+65444454 | None:intergenic |
| ATCAAGTAGTTAGGTCTTTG+TGG | 0.417195 | 3_1:+65443117 | None:intergenic |
| AAGCCACAAGTTGAACTTGA+TGG | 0.417920 | 3_1:-65448156 | Msa0368640:CDS |
| GGCGTTCGCCATCTTCGGTT+TGG | 0.419800 | 3_1:+65448871 | None:intergenic |
| TTTACCTGTACCAATGCATC+AGG | 0.419919 | 3_1:+65445840 | None:intergenic |
| ACAAGTTTATTGCTGCCTCT+TGG | 0.421855 | 3_1:+65445089 | None:intergenic |
| GTGCACCTGGTAATGATAAC+AGG | 0.425783 | 3_1:+65447190 | None:intergenic |
| GATCACCAATTTCCTAATGT+TGG | 0.427212 | 3_1:+65442893 | None:intergenic |
| ATTTGAACAGATAGCTTCCT+TGG | 0.437264 | 3_1:-65445504 | Msa0368640:intron |
| CATAAGGATTTGGTAGAGAA+AGG | 0.437766 | 3_1:-65444695 | Msa0368640:CDS |
| AACAATCCATCAACTCCTAC+TGG | 0.437800 | 3_1:+65443736 | None:intergenic |
| CGGGGTCCAGTAGGAGTTGA+TGG | 0.437815 | 3_1:-65443742 | Msa0368640:CDS |
| TTGGTTTCATCAGGTGCTGT+TGG | 0.442686 | 3_1:-65448465 | Msa0368640:CDS |
| TAAAGAGACCTGAAGCCGTC+TGG | 0.452613 | 3_1:+65446740 | None:intergenic |
| TGCAATAATTCGTATGTTGT+TGG | 0.453587 | 3_1:+65446324 | None:intergenic |
| TTACCAGCATGACCTAGAAC+AGG | 0.453722 | 3_1:+65445038 | None:intergenic |
| CGAGTCTCGCCCTGATGCAT+TGG | 0.455731 | 3_1:-65445850 | Msa0368640:CDS |
| GATGTAGATGGTCTTTATAA+TGG | 0.457455 | 3_1:-65447364 | Msa0368640:CDS |
| GGCAAGGCTTGTGCTGCTGT+TGG | 0.460166 | 3_1:-65448135 | Msa0368640:CDS |
| GACAAGTCTAGGGTTGGAAG+AGG | 0.461864 | 3_1:-65447265 | Msa0368640:CDS |
| GGAAGTGGACAAGTAGTAGA+TGG | 0.465008 | 3_1:-65443161 | Msa0368640:CDS |
| ATAAATAGCTCCAAATAGAA+AGG | 0.465415 | 3_1:-65442821 | Msa0368640:three_prime_UTR |
| GTGGAGAGAAACAGGGATGA+AGG | 0.465559 | 3_1:+65448893 | None:intergenic |
| CTGTTCGTTGGCTTGCACCT+TGG | 0.468448 | 3_1:-65444398 | Msa0368640:CDS |
| GATGGAGCACGATTTGGATT+AGG | 0.469235 | 3_1:-65443894 | Msa0368640:CDS |
| TTGGCAATACGAAGTGGGAA+TGG | 0.470100 | 3_1:-65445485 | Msa0368640:CDS |
| TCAAGTAGTTAGGTCTTTGT+GGG | 0.471554 | 3_1:+65443118 | None:intergenic |
| CGAGATGGCTGTTGCCGCTA+GGG | 0.472977 | 3_1:-65446769 | Msa0368640:CDS |
| TCTGTTCATGCTGCTGATGC+CGG | 0.473603 | 3_1:-65447217 | Msa0368640:CDS |
| TGAAATACCTGAGCTACTTA+AGG | 0.475896 | 3_1:-65445244 | Msa0368640:intron |
| CAACTGCTAACCTTCCATCT+TGG | 0.477604 | 3_1:+65448645 | None:intergenic |
| GTATTCACCTTAAGTAGCTC+AGG | 0.479835 | 3_1:+65445237 | None:intergenic |
| ATCTTCTGTGACAATGGAAT+CGG | 0.485571 | 3_1:+65444222 | None:intergenic |
| GTCGACAAAGGCTTAGATAT+AGG | 0.486595 | 3_1:-65448437 | Msa0368640:CDS |
| TATTTCTTCGTCAAGTCGAC+AGG | 0.492040 | 3_1:-65444183 | Msa0368640:intron |
| AATCATCATAAGTAGCCATA+AGG | 0.493336 | 3_1:+65448103 | None:intergenic |
| TGTTGGACAAAGCAGCCTTA+TGG | 0.495426 | 3_1:-65448118 | Msa0368640:CDS |
| TACAATATTCAATTGAGAGA+AGG | 0.495583 | 3_1:-65442985 | Msa0368640:three_prime_UTR |
| ATAGTATTAGTGACGATTTG+CGG | 0.497386 | 3_1:-65444664 | Msa0368640:CDS |
| ATCCCTGTTCTAGGTCATGC+TGG | 0.499422 | 3_1:-65445041 | Msa0368640:intron |
| TTCATGATCTTCTGTGACAA+TGG | 0.502299 | 3_1:+65444216 | None:intergenic |
| GCGAGATGGCTGTTGCCGCT+AGG | 0.503311 | 3_1:-65446770 | Msa0368640:CDS |
| GTTCGCCATCTTCGGTTTGG+TGG | 0.504248 | 3_1:+65448874 | None:intergenic |
| AATCAGAAACAAACCTCGTA+TGG | 0.504586 | 3_1:+65447764 | None:intergenic |
| GGGTACCAATACGCTGTCCT+TGG | 0.507124 | 3_1:+65446844 | None:intergenic |
| TGGCAATACGAAGTGGGAAT+GGG | 0.507240 | 3_1:-65445484 | Msa0368640:CDS |
| AGGCCGTGTCTTCGGAAGAA+AGG | 0.510241 | 3_1:-65446617 | Msa0368640:CDS |
| AGAACGACGCAGTCAGTACT+AGG | 0.510541 | 3_1:-65447793 | Msa0368640:CDS |
| ATTCTCCAAGGACAGCGTAT+TGG | 0.512269 | 3_1:-65446849 | Msa0368640:CDS |
| TGCAGGCTTCTCAAAGGAAG+TGG | 0.512350 | 3_1:-65443176 | Msa0368640:intron |
| TCTCTCCACCAAACCGAAGA+TGG | 0.513853 | 3_1:-65448879 | Msa0368640:exon |
| TTTGGAGACAAGTCTAGGGT+TGG | 0.514543 | 3_1:-65447271 | Msa0368640:CDS |
| TTTGATAGTGGATCACTTGG+AGG | 0.515358 | 3_1:+65447340 | None:intergenic |
| TCCATAAAGATGCACATAAG+TGG | 0.515951 | 3_1:-65446818 | Msa0368640:CDS |
| CATACGAATTATTGCAAACA+TGG | 0.516132 | 3_1:-65446317 | Msa0368640:CDS |
| CTGTTGGCCTCGGTCGACAA+AGG | 0.518196 | 3_1:-65448449 | Msa0368640:CDS |
| TATGTGCATCTTTATGGAAG+AGG | 0.518848 | 3_1:+65446823 | None:intergenic |
| AGGATTTGGTAGAGAAAGGC+TGG | 0.520318 | 3_1:-65444691 | Msa0368640:CDS |
| ATGATAGTACAGCTATGATA+AGG | 0.520932 | 3_1:+65448916 | None:intergenic |
| TAAATAGCTCCAAATAGAAA+GGG | 0.522122 | 3_1:-65442820 | Msa0368640:three_prime_UTR |
| ACAATATTCAATTGAGAGAA+GGG | 0.523371 | 3_1:-65442984 | Msa0368640:three_prime_UTR |
| ATTAGGGGCACTCTGTGAGC+AGG | 0.525812 | 3_1:-65448618 | Msa0368640:intron |
| TGAACCAACAGTATCAGGTA+TGG | 0.525984 | 3_1:+65445296 | None:intergenic |
| GACAAAATCTCTACAAGGGT+CGG | 0.530217 | 3_1:+65448850 | None:intergenic |
| CCAATTTCCTAATGTTGGGA+AGG | 0.531730 | 3_1:+65442898 | None:intergenic |
| TCGCCCTGATGCATTGGTAC+AGG | 0.531885 | 3_1:-65445844 | Msa0368640:intron |
| GTTCAACTTGTGGCTTCTGA+AGG | 0.535455 | 3_1:+65448163 | None:intergenic |
| ACAAGTCTAGGGTTGGAAGA+GGG | 0.535997 | 3_1:-65447264 | Msa0368640:CDS |
| TTTCCTTTCTTCCGAAGACA+CGG | 0.536247 | 3_1:+65446614 | None:intergenic |
| GCTGGATGATGTAATTGATC+TGG | 0.537357 | 3_1:-65445117 | Msa0368640:CDS |
| GAATTCCTGTTATCATTACC+AGG | 0.538039 | 3_1:-65447195 | Msa0368640:intron |
| TAAATCTGCTAATTTGGAGA+TGG | 0.538816 | 3_1:-65444876 | Msa0368640:CDS |
| AAGTCTAGGGTTGGAAGAGG+GGG | 0.539406 | 3_1:-65447262 | Msa0368640:CDS |
| GCATGAAGCGACGGCAGGCA+AGG | 0.541955 | 3_1:-65443076 | Msa0368640:three_prime_UTR |
| GGGAATGGGCTTCTCTTGAA+AGG | 0.542564 | 3_1:-65445470 | Msa0368640:CDS |
| TTGCCTGCCGTCGCTTCATG+CGG | 0.545263 | 3_1:+65443078 | None:intergenic |
| GCTGTTGTTACTCGCCAAGA+TGG | 0.546330 | 3_1:-65448659 | Msa0368640:CDS |
| ATCATATAAATCTTTATGGA+AGG | 0.547903 | 3_1:-65444345 | Msa0368640:intron |
| GCACAAGCAGGATTCATGCT+CGG | 0.548409 | 3_1:-65443762 | Msa0368640:CDS |
| ACATCATGAGTACTGTTCGT+TGG | 0.551298 | 3_1:-65444410 | Msa0368640:CDS |
| GTTGTTGCTGCACAAGAAGC+AGG | 0.557805 | 3_1:-65446519 | Msa0368640:CDS |
| ATGTGCATCTTTATGGAAGA+GGG | 0.558884 | 3_1:+65446824 | None:intergenic |
| CAAGTCTAGGGTTGGAAGAG+GGG | 0.559526 | 3_1:-65447263 | Msa0368640:CDS |
| AGTTAGGTCTTTGTGGGTGT+AGG | 0.560284 | 3_1:+65443124 | None:intergenic |
| ACAAGTTGAACTTGATGGCA+AGG | 0.561360 | 3_1:-65448151 | Msa0368640:CDS |
| TGAAAATCCGCATGAAGCGA+CGG | 0.563909 | 3_1:-65443085 | Msa0368640:three_prime_UTR |
| TTGTTACTCGCCAAGATGGA+AGG | 0.563949 | 3_1:-65448655 | Msa0368640:CDS |
| TGTTAAGCGCATAATCATCA+AGG | 0.564458 | 3_1:-65448822 | Msa0368640:intron |
| AGTGACGATTTGCGGTCGGA+AGG | 0.565083 | 3_1:-65444656 | Msa0368640:intron |
| ATAGGAAATTGATTCAAAGC+AGG | 0.566125 | 3_1:-65448419 | Msa0368640:intron |
| TCTTTGACAAAATCTCTACA+AGG | 0.569118 | 3_1:+65448845 | None:intergenic |
| AATCCGCATGAAGCGACGGC+AGG | 0.569163 | 3_1:-65443081 | Msa0368640:three_prime_UTR |
| AGAGGTTGATGTACGCGAGA+TGG | 0.572314 | 3_1:-65446784 | Msa0368640:CDS |
| TGCCAATGCAGGCTTCTCAA+AGG | 0.574998 | 3_1:-65443182 | Msa0368640:intron |
| TAAAACCAGCCTAGCAACCA+AGG | 0.575939 | 3_1:+65446485 | None:intergenic |
| TTGATAGTGGATCACTTGGA+GGG | 0.578228 | 3_1:+65447341 | None:intergenic |
| ACCATGGCATTGCATCCTGA+TGG | 0.580281 | 3_1:+65444818 | None:intergenic |
| GGCTTGCACCTTGGAAATCG+TGG | 0.584787 | 3_1:-65444389 | Msa0368640:CDS |
| GCTATTTATTTGAACAACTG+TGG | 0.587498 | 3_1:+65442835 | None:intergenic |
| GTAGGTGTTACTTTATATGG+AGG | 0.588299 | 3_1:-65444478 | Msa0368640:intron |
| CCATAAAGATGCACATAAGT+GGG | 0.592742 | 3_1:-65446817 | Msa0368640:CDS |
| TGATGTAATGAACGAGCAAG+TGG | 0.593696 | 3_1:+65444427 | None:intergenic |
| TAATTCGTATGTTGTTGGCA+AGG | 0.595682 | 3_1:+65446329 | None:intergenic |
| AATCACGTGAGAAAGAGATC+AGG | 0.595752 | 3_1:-65446560 | Msa0368640:CDS |
| TTGCCATCAAGTTCAACTTG+TGG | 0.596653 | 3_1:+65448153 | None:intergenic |
| ACTTATTCACACATACATCA+AGG | 0.602298 | 3_1:-65447317 | Msa0368640:CDS |
| ATCTAAGCCTTTGTCGACCG+AGG | 0.602339 | 3_1:+65448442 | None:intergenic |
| ATTCATGCTCGGGGTCCAGT+AGG | 0.607413 | 3_1:-65443751 | Msa0368640:CDS |
| ATTCCCACTTCGTATTGCCA+AGG | 0.607702 | 3_1:+65445487 | None:intergenic |
| GCTTCTCTTGAAAGGAGGCA+AGG | 0.610911 | 3_1:-65445462 | Msa0368640:CDS |
| TAAGTGGGTCCCTTCAAAAG+AGG | 0.611546 | 3_1:-65446802 | Msa0368640:CDS |
| AACATCATCCACGATTTCCA+AGG | 0.613354 | 3_1:+65444381 | None:intergenic |
| CAAGATGGAAGGTTAGCAGT+TGG | 0.616664 | 3_1:-65448644 | Msa0368640:CDS |
| AATCTCACTAAAATTCTCCA+AGG | 0.618787 | 3_1:-65446861 | Msa0368640:CDS |
| AGGTTGGAATAAGCACAAGC+AGG | 0.619676 | 3_1:-65443774 | Msa0368640:CDS |
| CGGTTTGGTGGAGAGAAACA+GGG | 0.620598 | 3_1:+65448886 | None:intergenic |
| ATGGATTGTTAACAACCAGA+TGG | 0.621962 | 3_1:-65443723 | Msa0368640:intron |
| GTTAGCAGTTGGAAAATTAG+GGG | 0.626527 | 3_1:-65448633 | Msa0368640:CDS |
| CTTCCTTGGCAATACGAAGT+GGG | 0.627539 | 3_1:-65445490 | Msa0368640:CDS |
| GCTTCCTTGGCAATACGAAG+TGG | 0.630392 | 3_1:-65445491 | Msa0368640:CDS |
| TCCATCAGGATGCAATGCCA+TGG | 0.631095 | 3_1:-65444819 | Msa0368640:intron |
| TATTAGTGACGATTTGCGGT+CGG | 0.633470 | 3_1:-65444660 | Msa0368640:CDS |
| GAAGCCATACCTGATACTGT+TGG | 0.635151 | 3_1:-65445300 | Msa0368640:CDS |
| ATAATTAAAAGAACTCCCAA+AGG | 0.641890 | 3_1:+65445876 | None:intergenic |
| GCAAACATGGAAGATCCGAT+TGG | 0.643252 | 3_1:-65446304 | Msa0368640:CDS |
| AATGGGCTTCTCTTGAAAGG+AGG | 0.649708 | 3_1:-65445467 | Msa0368640:CDS |
| GCTAGTACAAGATTCAGCGA+TGG | 0.668586 | 3_1:-65443912 | Msa0368640:CDS |
| CCGCTAGGGACTGTTCCAGA+CGG | 0.668873 | 3_1:-65446755 | Msa0368640:CDS |
| CTTTGACAAAATCTCTACAA+GGG | 0.672180 | 3_1:+65448846 | None:intergenic |
| TACTAGGAAAGCTCCATACG+AGG | 0.688400 | 3_1:-65447777 | Msa0368640:intron |
| TTACCTGTACCAATGCATCA+GGG | 0.694781 | 3_1:+65445841 | None:intergenic |
| ACAAGCAGGATTCATGCTCG+GGG | 0.697980 | 3_1:-65443760 | Msa0368640:CDS |
| ATTGATCTGGTGATTCCAAG+AGG | 0.700847 | 3_1:-65445104 | Msa0368640:CDS |
| TCTCTTGAAAGGAGGCAAGG+AGG | 0.705490 | 3_1:-65445459 | Msa0368640:CDS |
| TACCAGCATGACCTAGAACA+GGG | 0.710800 | 3_1:+65445039 | None:intergenic |
| ACGATTTGGATTAGGCGCAG+AGG | 0.714176 | 3_1:-65443886 | Msa0368640:intron |
| CCGTCTGGAACAGTCCCTAG+CGG | 0.716534 | 3_1:+65446755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAGAAAAATATAATTT+GGG | + | chr3_1:65444121-65444140 | None:intergenic | 10.0% |
| !! | TGTGTTAAAATAAAATAAAA+CGG | + | chr3_1:65444575-65444594 | None:intergenic | 10.0% |
| !!! | AATATATTTCTAATTGAAAA+TGG | + | chr3_1:65444610-65444629 | None:intergenic | 10.0% |
| !! | AATTAGAAATATATTAGTTA+GGG | - | chr3_1:65444615-65444634 | Msa0368640:intron | 10.0% |
| !!! | AATTCATTTTATCTAAAATA+AGG | + | chr3_1:65446041-65446060 | None:intergenic | 10.0% |
| !!! | TATTTATGCATTTTTTTTTT+TGG | - | chr3_1:65446350-65446369 | Msa0368640:intron | 10.0% |
| !!! | ATTTATGCATTTTTTTTTTT+GGG | - | chr3_1:65446351-65446370 | Msa0368640:intron | 10.0% |
| !! | ATTATAAAGTTTATATTGTA+AGG | - | chr3_1:65447175-65447194 | Msa0368640:intron | 10.0% |
| !! | ATTTATATATGAATAATGTT+TGG | - | chr3_1:65447743-65447762 | Msa0368640:intron | 10.0% |
| !!! | GTTAATTTATCATTATATTT+TGG | - | chr3_1:65447903-65447922 | Msa0368640:CDS | 10.0% |
| !!! | TTTATTTTGATTCATTTTCA+AGG | - | chr3_1:65443018-65443037 | Msa0368640:three_prime_UTR | 15.0% |
| !! | TATTATAAGAGAAGAAAAAT+TGG | - | chr3_1:65443140-65443159 | Msa0368640:CDS | 15.0% |
| !!! | TTTTTTCCAATTTTATTTGA+AGG | - | chr3_1:65443473-65443492 | Msa0368640:intron | 15.0% |
| !! | CAAAAGAGAAAAATATAATT+TGG | + | chr3_1:65444122-65444141 | None:intergenic | 15.0% |
| !!! | AACACTTTTAAGTATTTTTT+AGG | + | chr3_1:65444218-65444237 | None:intergenic | 15.0% |
| !!! | TTATTTTAACACATTTTTTG+TGG | - | chr3_1:65444582-65444601 | Msa0368640:intron | 15.0% |
| !! | CAATTAGAAATATATTAGTT+AGG | - | chr3_1:65444614-65444633 | Msa0368640:intron | 15.0% |
| !!! | AATTTTCAAAAAATGAGAAT+CGG | + | chr3_1:65444779-65444798 | None:intergenic | 15.0% |
| !! | TTGTCAAATTATCATTTAAT+TGG | + | chr3_1:65446313-65446332 | None:intergenic | 15.0% |
| !! | ATTCATCATATAAATCTTTA+TGG | - | chr3_1:65447359-65447378 | Msa0368640:CDS | 15.0% |
| !!! | CTTTTTTTACAATGTTATTT+AGG | - | chr3_1:65447636-65447655 | Msa0368640:intron | 15.0% |
| !! | TAAAAAGAAAAATGTTTGTT+GGG | + | chr3_1:65447679-65447698 | None:intergenic | 15.0% |
| !! | TTAAAAAGAAAAATGTTTGT+TGG | + | chr3_1:65447680-65447699 | None:intergenic | 15.0% |
| !! | ATGCTATAATTACTTAATTA+TGG | + | chr3_1:65448220-65448239 | None:intergenic | 15.0% |
| !! | TAATTAAGTAATTATAGCAT+TGG | - | chr3_1:65448220-65448239 | Msa0368640:intron | 15.0% |
| !!! | TTGATTGTAATTTATTTTCT+TGG | - | chr3_1:65448663-65448682 | Msa0368640:CDS | 15.0% |
| !!! | TGATTGTAATTTATTTTCTT+GGG | - | chr3_1:65448664-65448683 | Msa0368640:CDS | 15.0% |
| !!! | GAACACTTTGTTATAAATAT+GGG | - | chr3_1:65443335-65443354 | Msa0368640:intron | 20.0% |
| !!! | AACACTTTGTTATAAATATG+GGG | - | chr3_1:65443336-65443355 | Msa0368640:intron | 20.0% |
| !!! | TTAATTGATTTAGCATCTTA+TGG | - | chr3_1:65443658-65443677 | Msa0368640:intron | 20.0% |
| !! | TTACATCAACTTATAAACAA+TGG | + | chr3_1:65443688-65443707 | None:intergenic | 20.0% |
| !!! | TTCTTGTCAATTTCATTTTT+AGG | - | chr3_1:65443710-65443729 | Msa0368640:intron | 20.0% |
| !! | AACAAAGCATAATTTAAACT+TGG | - | chr3_1:65443971-65443990 | Msa0368640:intron | 20.0% |
| !! | TTGTGAAGAAAAAAAATTAG+TGG | - | chr3_1:65444020-65444039 | Msa0368640:intron | 20.0% |
| !!! | TTTTTTTGCTGTTATGATAT+AGG | - | chr3_1:65444072-65444091 | Msa0368640:intron | 20.0% |
| !! | TCTTTATACTGATCATTATA+TGG | - | chr3_1:65444161-65444180 | Msa0368640:intron | 20.0% |
| !!! | CATCAAAATGAAATTACTTT+TGG | - | chr3_1:65444419-65444438 | Msa0368640:CDS | 20.0% |
| !!! | GATTCTCATTTTTTGAAAAT+TGG | - | chr3_1:65444778-65444797 | Msa0368640:intron | 20.0% |
| !!! | TTTTATTTTTCTTCTTTCAG+TGG | - | chr3_1:65444811-65444830 | Msa0368640:intron | 20.0% |
| !! | GAAGAACAAAAAATATGAAA+AGG | + | chr3_1:65445899-65445918 | None:intergenic | 20.0% |
| !! | ATGATCAATCAATCTAAAAA+TGG | + | chr3_1:65446126-65446145 | None:intergenic | 20.0% |
| !!! | ATTTTATTGTCAAAATCAGA+TGG | - | chr3_1:65446788-65446807 | Msa0368640:CDS | 20.0% |
| !!! | TTTTATTGTCAAAATCAGAT+GGG | - | chr3_1:65446789-65446808 | Msa0368640:CDS | 20.0% |
| !! | AAATAACATATATTAAGGCA+TGG | + | chr3_1:65446962-65446981 | None:intergenic | 20.0% |
| !! | TTATTTAAATTTGAACTCCT+AGG | - | chr3_1:65446976-65446995 | Msa0368640:intron | 20.0% |
| !!! | AGATGATTTAAAACTTATGT+AGG | - | chr3_1:65447212-65447231 | Msa0368640:CDS | 20.0% |
| !! | ATCATATAAATCTTTATGGA+AGG | - | chr3_1:65447363-65447382 | Msa0368640:CDS | 20.0% |
| !!! | ATTATATTTTGGGCTTTAAT+AGG | - | chr3_1:65447914-65447933 | Msa0368640:CDS | 20.0% |
| !!! | AATGTTTCTAAAGTATTAGA+AGG | + | chr3_1:65448025-65448044 | None:intergenic | 20.0% |
| !! | TCAATAAATAAGCTCAAATA+AGG | - | chr3_1:65448438-65448457 | Msa0368640:CDS | 20.0% |
| !!! | AATTTTTTTCCCTTTCTATT+TGG | + | chr3_1:65448900-65448919 | None:intergenic | 20.0% |
| !!! | TTTTGATTCATTTTCAAGGT+TGG | - | chr3_1:65443022-65443041 | Msa0368640:three_prime_UTR | 25.0% |
| !!! | ATGACCCTTTTGAAAATAAA+TGG | - | chr3_1:65443181-65443200 | Msa0368640:intron | 25.0% |
| !!! | TCTGCCATTTATTTTCAAAA+GGG | + | chr3_1:65443188-65443207 | None:intergenic | 25.0% |
| !!! | ATCTGCCATTTATTTTCAAA+AGG | + | chr3_1:65443189-65443208 | None:intergenic | 25.0% |
| ! | TGAAAATAAATGGCAGATTA+AGG | - | chr3_1:65443191-65443210 | Msa0368640:intron | 25.0% |
| !! | TCTTGGTTATGAAGTTATTT+TGG | - | chr3_1:65443224-65443243 | Msa0368640:intron | 25.0% |
| !! | CGAACACTTTGTTATAAATA+TGG | - | chr3_1:65443334-65443353 | Msa0368640:intron | 25.0% |
| !! | ACACTTTGTTATAAATATGG+GGG | - | chr3_1:65443337-65443356 | Msa0368640:intron | 25.0% |
| !!! | AACAACAATGATTGCTATTT+AGG | + | chr3_1:65443384-65443403 | None:intergenic | 25.0% |
| !!! | TTATGATGATTTGTTTAGTC+AGG | - | chr3_1:65443617-65443636 | Msa0368640:intron | 25.0% |
| !!! | AAAGTTGCTTTCTAAAATCT+TGG | + | chr3_1:65443844-65443863 | None:intergenic | 25.0% |
| ! | AAAGCATAATTTAAACTTGG+AGG | - | chr3_1:65443974-65443993 | Msa0368640:intron | 25.0% |
| !!! | TTTTTTCTGTCAAACAACTA+AGG | - | chr3_1:65445532-65445551 | Msa0368640:intron | 25.0% |
| !! | GATTGATTCAGTTTAAAAAG+CGG | + | chr3_1:65445558-65445577 | None:intergenic | 25.0% |
| ! | ATAATTAAAAGAACTCCCAA+AGG | + | chr3_1:65445835-65445854 | None:intergenic | 25.0% |
| ! | TCATTTATAAATCAATCGAG+AGG | + | chr3_1:65445921-65445940 | None:intergenic | 25.0% |
| !!! | TAAATGATTCTTTTTCAGCT+CGG | - | chr3_1:65445934-65445953 | Msa0368640:intron | 25.0% |
| ! | ATTACCTGAACATTTAGATA+GGG | + | chr3_1:65446384-65446403 | None:intergenic | 25.0% |
| ! | AATTACCTGAACATTTAGAT+AGG | + | chr3_1:65446385-65446404 | None:intergenic | 25.0% |
| ! | TGCAAGTATATTAAGCTTAA+AGG | + | chr3_1:65446698-65446717 | None:intergenic | 25.0% |
| !! | TGTTGATAAATCTGCTAATT+TGG | - | chr3_1:65446826-65446845 | Msa0368640:CDS | 25.0% |
| !! | ATATTGTAAGGTTTCTGAAA+TGG | - | chr3_1:65447187-65447206 | Msa0368640:intron | 25.0% |
| !!! | TATGTAGGTGTTACTTTATA+TGG | - | chr3_1:65447227-65447246 | Msa0368640:CDS | 25.0% |
| ! | CGATGTAATATTTGATTAGA+GGG | + | chr3_1:65447585-65447604 | None:intergenic | 25.0% |
| ! | TCGATGTAATATTTGATTAG+AGG | + | chr3_1:65447586-65447605 | None:intergenic | 25.0% |
| ! | TCTAATCAAATATTACATCG+AGG | - | chr3_1:65447585-65447604 | Msa0368640:intron | 25.0% |
| ! | AAAAGCTACTGATGATAAAA+AGG | + | chr3_1:65447869-65447888 | None:intergenic | 25.0% |
| ! | TCAATAAGAAAGAAACAGAA+AGG | + | chr3_1:65448057-65448076 | None:intergenic | 25.0% |
| ! | TGTTTCTTTCTTATTGAACT+AGG | - | chr3_1:65448060-65448079 | Msa0368640:intron | 25.0% |
| ! | AATTATGGTTTATCCAAACA+AGG | + | chr3_1:65448205-65448224 | None:intergenic | 25.0% |
| ! | CAGTTTATATACCAAATAGT+TGG | + | chr3_1:65448488-65448507 | None:intergenic | 25.0% |
| ! | TACAATATTCAATTGAGAGA+AGG | - | chr3_1:65448723-65448742 | Msa0368640:intron | 25.0% |
| ! | ACAATATTCAATTGAGAGAA+GGG | - | chr3_1:65448724-65448743 | Msa0368640:intron | 25.0% |
| ! | ATAAATAGCTCCAAATAGAA+AGG | - | chr3_1:65448887-65448906 | Msa0368640:five_prime_UTR | 25.0% |
| ! | TAAATAGCTCCAAATAGAAA+GGG | - | chr3_1:65448888-65448907 | Msa0368640:five_prime_UTR | 25.0% |
| ATGATAGTACAGCTATGATA+AGG | + | chr3_1:65442795-65442814 | None:intergenic | 30.0% | |
| CTTTGACAAAATCTCTACAA+GGG | + | chr3_1:65442865-65442884 | None:intergenic | 30.0% | |
| TCTTTGACAAAATCTCTACA+AGG | + | chr3_1:65442866-65442885 | None:intergenic | 30.0% | |
| TCACAAAACTTCAATACCAA+TGG | - | chr3_1:65442971-65442990 | Msa0368640:three_prime_UTR | 30.0% | |
| !! | ATACCAATGGATTATGCAAA+TGG | - | chr3_1:65442984-65443003 | Msa0368640:three_prime_UTR | 30.0% |
| ! | ATTTTCAAAAGGGTCATTGA+TGG | + | chr3_1:65443178-65443197 | None:intergenic | 30.0% |
| ATTAAGGAGCTTAACATTCT+TGG | - | chr3_1:65443207-65443226 | Msa0368640:intron | 30.0% | |
| !!! | GAAGTTATTTTGGTTTCATC+AGG | - | chr3_1:65443234-65443253 | Msa0368640:intron | 30.0% |
| ! | ATAGGAAATTGATTCAAAGC+AGG | - | chr3_1:65443289-65443308 | Msa0368640:intron | 30.0% |
| CCTCTACCTTCAAATAAAAT+TGG | + | chr3_1:65443482-65443501 | None:intergenic | 30.0% | |
| !! | CCAATTTTATTTGAAGGTAG+AGG | - | chr3_1:65443479-65443498 | Msa0368640:intron | 30.0% |
| AATCATCATAAGTAGCCATA+AGG | + | chr3_1:65443608-65443627 | None:intergenic | 30.0% | |
| ! | TCTTTTGATAAATGTGTCCA+AGG | - | chr3_1:65444135-65444154 | Msa0368640:intron | 30.0% |
| ! | CTTTTGATAAATGTGTCCAA+GGG | - | chr3_1:65444136-65444155 | Msa0368640:intron | 30.0% |
| !! | AAGATCTGCTTTTAATTCCA+AGG | + | chr3_1:65444309-65444328 | None:intergenic | 30.0% |
| ! | ATTTTGTTGAGTGATGTAGA+TGG | - | chr3_1:65444332-65444351 | Msa0368640:intron | 30.0% |
| GATGTAGATGGTCTTTATAA+TGG | - | chr3_1:65444344-65444363 | Msa0368640:intron | 30.0% | |
| !! | GTGTGAATAAGTTTTGATAG+TGG | + | chr3_1:65444383-65444402 | None:intergenic | 30.0% |
| ACTTATTCACACATACATCA+AGG | - | chr3_1:65444391-65444410 | Msa0368640:CDS | 30.0% | |
| ! | ATGAACAGAAGCTTTTACTT+TGG | + | chr3_1:65444480-65444499 | None:intergenic | 30.0% |
| TAATGCATCAACAAAGGAAA+GGG | + | chr3_1:65444697-65444716 | None:intergenic | 30.0% | |
| TCTTACTAATGCATCAACAA+AGG | + | chr3_1:65444703-65444722 | None:intergenic | 30.0% | |
| ! | AATGGATTTCATAGTGTTCT+TGG | + | chr3_1:65444736-65444755 | None:intergenic | 30.0% |
| GGAGTATGTAACATACATAA+TGG | + | chr3_1:65444754-65444773 | None:intergenic | 30.0% | |
| TTCAAAAAATGAGAATCGGA+TGG | + | chr3_1:65444775-65444794 | None:intergenic | 30.0% | |
| AATCTCACTAAAATTCTCCA+AGG | - | chr3_1:65444847-65444866 | Msa0368640:CDS | 30.0% | |
| AACAGTTAGAAAATGTCTCT+CGG | - | chr3_1:65444998-65445017 | Msa0368640:intron | 30.0% | |
| ! | ATTAGGAGATTAGCATGTTT+TGG | + | chr3_1:65445061-65445080 | None:intergenic | 30.0% |
| TGCAATAATTCGTATGTTGT+TGG | + | chr3_1:65445387-65445406 | None:intergenic | 30.0% | |
| CATACGAATTATTGCAAACA+TGG | - | chr3_1:65445391-65445410 | Msa0368640:intron | 30.0% | |
| AGTTTGCAAACAGATTACTA+AGG | + | chr3_1:65445508-65445527 | None:intergenic | 30.0% | |
| GTAAACTGTATCTACTAGTA+TGG | + | chr3_1:65445616-65445635 | None:intergenic | 30.0% | |
| CTAGTAGATACAGTTTACAA+AGG | - | chr3_1:65445618-65445637 | Msa0368640:intron | 30.0% | |
| CAATACATGACTTTATGACA+TGG | + | chr3_1:65445689-65445708 | None:intergenic | 30.0% | |
| ! | ATCAACACTATTGATTGTAC+TGG | - | chr3_1:65445721-65445740 | Msa0368640:intron | 30.0% |
| !! | TTGATTGTACTGGTTAATGA+TGG | - | chr3_1:65445731-65445750 | Msa0368640:intron | 30.0% |
| !!! | CTTTTTATTTAGCTTGCAGA+GGG | - | chr3_1:65445784-65445803 | Msa0368640:intron | 30.0% |
| !!! | TTTTTATTTAGCTTGCAGAG+GGG | - | chr3_1:65445785-65445804 | Msa0368640:intron | 30.0% |
| AAACTGAACTTTGTGCAAAA+TGG | + | chr3_1:65446290-65446309 | None:intergenic | 30.0% | |
| !! | ACTGTTGGTTCAAAACTTAT+TGG | - | chr3_1:65446423-65446442 | Msa0368640:intron | 30.0% |
| CAACAGTGCAAATTAATTTC+TGG | - | chr3_1:65446493-65446512 | Msa0368640:CDS | 30.0% | |
| !! | CTTTCTATTTGTTTTTCAGC+TGG | - | chr3_1:65446573-65446592 | Msa0368640:CDS | 30.0% |
| TAAATCTGCTAATTTGGAGA+TGG | - | chr3_1:65446832-65446851 | Msa0368640:CDS | 30.0% | |
| ACTTCTTGTTCATAAGGATT+TGG | - | chr3_1:65447003-65447022 | Msa0368640:intron | 30.0% | |
| ATAGTATTAGTGACGATTTG+CGG | - | chr3_1:65447044-65447063 | Msa0368640:intron | 30.0% | |
| ATATGAAGAGAATTATCTGC+TGG | - | chr3_1:65447098-65447117 | Msa0368640:intron | 30.0% | |
| TGATCTGTGATCTCAAAAAA+GGG | + | chr3_1:65447711-65447730 | None:intergenic | 30.0% | |
| ATGATCTGTGATCTCAAAAA+AGG | + | chr3_1:65447712-65447731 | None:intergenic | 30.0% | |
| !! | GATCACAGATCATTTTAAAG+TGG | - | chr3_1:65447719-65447738 | Msa0368640:intron | 30.0% |
| !! | TATTTTGGGCTTTAATAGGT+TGG | - | chr3_1:65447918-65447937 | Msa0368640:CDS | 30.0% |
| ! | TAAAGTATTAGAAGGAGCAT+CGG | + | chr3_1:65448017-65448036 | None:intergenic | 30.0% |
| TAGCTAATCACAATTATACG+CGG | - | chr3_1:65448131-65448150 | Msa0368640:CDS | 30.0% | |
| TCAACGTTTATGACCATAAT+AGG | - | chr3_1:65448179-65448198 | Msa0368640:intron | 30.0% | |
| !! | CTTATTTCTATAAGCTCTCT+TGG | + | chr3_1:65448347-65448366 | None:intergenic | 30.0% |
| ! | CCAAATAGTTGGTGTTTATA+GGG | + | chr3_1:65448477-65448496 | None:intergenic | 30.0% |
| ! | ACCAAATAGTTGGTGTTTAT+AGG | + | chr3_1:65448478-65448497 | None:intergenic | 30.0% |
| TTGGTATATAAACTGATGCA+TGG | - | chr3_1:65448493-65448512 | Msa0368640:CDS | 30.0% | |
| GTAGCAAAAATCAAGTAGTT+AGG | + | chr3_1:65448603-65448622 | None:intergenic | 30.0% | |
| ATCACCAATTTCCTAATGTT+GGG | + | chr3_1:65448817-65448836 | None:intergenic | 30.0% | |
| GCTATTTATTTGAACAACTG+TGG | + | chr3_1:65448876-65448895 | None:intergenic | 30.0% | |
| TGTTAAGCGCATAATCATCA+AGG | - | chr3_1:65442886-65442905 | Msa0368640:three_prime_UTR | 35.0% | |
| TAGCCATTTGCATAATCCAT+TGG | + | chr3_1:65442990-65443009 | None:intergenic | 35.0% | |
| ! | ATGGATTATGCAAATGGCTA+AGG | - | chr3_1:65442990-65443009 | Msa0368640:three_prime_UTR | 35.0% |
| AGGTTAGCAGTTGGAAAATT+AGG | - | chr3_1:65443073-65443092 | Msa0368640:three_prime_UTR | 35.0% | |
| GGTTAGCAGTTGGAAAATTA+GGG | - | chr3_1:65443074-65443093 | Msa0368640:three_prime_UTR | 35.0% | |
| GTTAGCAGTTGGAAAATTAG+GGG | - | chr3_1:65443075-65443094 | Msa0368640:three_prime_UTR | 35.0% | |
| AATCAGAAACAAACCTCGTA+TGG | + | chr3_1:65443947-65443966 | None:intergenic | 35.0% | |
| GATCAGTATAAAGAAACCCT+TGG | + | chr3_1:65444155-65444174 | None:intergenic | 35.0% | |
| !!! | GTTACCTACTCATTTTTTGC+AGG | - | chr3_1:65444235-65444254 | Msa0368640:intron | 35.0% |
| GAATCCTGCAAAAAATGAGT+AGG | + | chr3_1:65444242-65444261 | None:intergenic | 35.0% | |
| !!! | CATTTTTTGCAGGATTCTTC+TGG | - | chr3_1:65444245-65444264 | Msa0368640:intron | 35.0% |
| ! | AGGATTCTTCTGGCATATTT+TGG | - | chr3_1:65444255-65444274 | Msa0368640:intron | 35.0% |
| ! | GGATTCTTCTGGCATATTTT+GGG | - | chr3_1:65444256-65444275 | Msa0368640:intron | 35.0% |
| ! | TGACAGTTTATCAGCTTTGT+TGG | - | chr3_1:65444283-65444302 | Msa0368640:intron | 35.0% |
| !!! | AGTTTTGATAGTGGATCACT+TGG | + | chr3_1:65444374-65444393 | None:intergenic | 35.0% |
| !! | TTACTTTTGGAGACAAGTCT+AGG | - | chr3_1:65444432-65444451 | Msa0368640:CDS | 35.0% |
| !! | TACTTTTGGAGACAAGTCTA+GGG | - | chr3_1:65444433-65444452 | Msa0368640:CDS | 35.0% |
| GGTAATGATAACAGGAATTC+CGG | + | chr3_1:65444513-65444532 | None:intergenic | 35.0% | |
| GAATTCCTGTTATCATTACC+AGG | - | chr3_1:65444513-65444532 | Msa0368640:intron | 35.0% | |
| AATGCATCAACAAAGGAAAG+GGG | + | chr3_1:65444696-65444715 | None:intergenic | 35.0% | |
| CTAATGCATCAACAAAGGAA+AGG | + | chr3_1:65444698-65444717 | None:intergenic | 35.0% | |
| ATGTGCATCTTTATGGAAGA+GGG | + | chr3_1:65444887-65444906 | None:intergenic | 35.0% | |
| TATGTGCATCTTTATGGAAG+AGG | + | chr3_1:65444888-65444907 | None:intergenic | 35.0% | |
| TCCATAAAGATGCACATAAG+TGG | - | chr3_1:65444890-65444909 | Msa0368640:CDS | 35.0% | |
| CCATAAAGATGCACATAAGT+GGG | - | chr3_1:65444891-65444910 | Msa0368640:CDS | 35.0% | |
| ! | GTACATCAACCTCTTTTGAA+GGG | + | chr3_1:65444918-65444937 | None:intergenic | 35.0% |
| ATCTCCTAATCTTACGTTAC+AGG | - | chr3_1:65445071-65445090 | Msa0368640:CDS | 35.0% | |
| CTATATAACTGACAGATCGT+AGG | - | chr3_1:65445356-65445375 | Msa0368640:intron | 35.0% | |
| TAATTCGTATGTTGTTGGCA+AGG | + | chr3_1:65445382-65445401 | None:intergenic | 35.0% | |
| !!! | CGTTTTAAAACTCGACCAAT+CGG | + | chr3_1:65445422-65445441 | None:intergenic | 35.0% |
| !!! | TCGAGTTTTAAAACGAACTG+AGG | - | chr3_1:65445427-65445446 | Msa0368640:intron | 35.0% |
| CCTCTGCAAGCTAAATAAAA+AGG | + | chr3_1:65445786-65445805 | None:intergenic | 35.0% | |
| !!! | CCTTTTTATTTAGCTTGCAG+AGG | - | chr3_1:65445783-65445802 | Msa0368640:intron | 35.0% |
| ! | CCTTACTTTAGAAAAGCTGT+GGG | - | chr3_1:65446010-65446029 | Msa0368640:intron | 35.0% |
| ATTTGAACAGATAGCTTCCT+TGG | - | chr3_1:65446204-65446223 | Msa0368640:intron | 35.0% | |
| TTGACCCTATCTAAATGTTC+AGG | - | chr3_1:65446377-65446396 | Msa0368640:intron | 35.0% | |
| !!! | AGTTTTGAACCAACAGTATC+AGG | + | chr3_1:65446420-65446439 | None:intergenic | 35.0% |
| TGAAATACCTGAGCTACTTA+AGG | - | chr3_1:65446464-65446483 | Msa0368640:CDS | 35.0% | |
| TGCTCACTTTGAATAGATTG+TGG | - | chr3_1:65446526-65446545 | Msa0368640:CDS | 35.0% | |
| TATACTTGCAGTGCTTGATA+TGG | - | chr3_1:65446708-65446727 | Msa0368640:intron | 35.0% | |
| GCAAAAACAGATTATCCATC+AGG | - | chr3_1:65446875-65446894 | Msa0368640:CDS | 35.0% | |
| TCCAACACACTAAATTACCA+TGG | + | chr3_1:65446909-65446928 | None:intergenic | 35.0% | |
| !! | ATGAACAAGAAGTGTTTCCT+AGG | + | chr3_1:65446996-65447015 | None:intergenic | 35.0% |
| GGAAACACTTCTTGTTCATA+AGG | - | chr3_1:65446997-65447016 | Msa0368640:intron | 35.0% | |
| ! | CATAAGGATTTGGTAGAGAA+AGG | - | chr3_1:65447013-65447032 | Msa0368640:intron | 35.0% |
| !! | GTAGGTGTTACTTTATATGG+AGG | - | chr3_1:65447230-65447249 | Msa0368640:CDS | 35.0% |
| ! | TTCAACAGAGAACTTGCTTT+CGG | + | chr3_1:65447257-65447276 | None:intergenic | 35.0% |
| !! | TTGTTGCTATTTCCCCATTA+TGG | - | chr3_1:65447452-65447471 | Msa0368640:CDS | 35.0% |
| ATCTTCTGTGACAATGGAAT+CGG | + | chr3_1:65447489-65447508 | None:intergenic | 35.0% | |
| TTCATGATCTTCTGTGACAA+TGG | + | chr3_1:65447495-65447514 | None:intergenic | 35.0% | |
| ! | ATCATCAGTAGCTTTTGCTA+AGG | - | chr3_1:65447873-65447892 | Msa0368640:CDS | 35.0% |
| ! | ATGGATTGTTAACAACCAGA+TGG | - | chr3_1:65447985-65448004 | Msa0368640:intron | 35.0% |
| TATCCAAACAAGGCCTATTA+TGG | + | chr3_1:65448195-65448214 | None:intergenic | 35.0% | |
| TTCTATAAGCTCTCTTGGAT+AGG | + | chr3_1:65448342-65448361 | None:intergenic | 35.0% | |
| AGAGCTATGGAAACATCTTA+TGG | + | chr3_1:65448392-65448411 | None:intergenic | 35.0% | |
| CCCTATAAACACCAACTATT+TGG | - | chr3_1:65448474-65448493 | Msa0368640:CDS | 35.0% | |
| GATTATTCATTTGCCAATGC+AGG | - | chr3_1:65448515-65448534 | Msa0368640:intron | 35.0% | |
| TCAAGTAGTTAGGTCTTTGT+GGG | + | chr3_1:65448593-65448612 | None:intergenic | 35.0% | |
| ATCAAGTAGTTAGGTCTTTG+TGG | + | chr3_1:65448594-65448613 | None:intergenic | 35.0% | |
| TTTCTTCTGTGTTCAGAGTT+AGG | - | chr3_1:65448691-65448710 | Msa0368640:intron | 35.0% | |
| GATCACCAATTTCCTAATGT+TGG | + | chr3_1:65448818-65448837 | None:intergenic | 35.0% | |
| GACAAAATCTCTACAAGGGT+CGG | + | chr3_1:65442861-65442880 | None:intergenic | 40.0% | |
| GTCGACAAAGGCTTAGATAT+AGG | - | chr3_1:65443271-65443290 | Msa0368640:intron | 40.0% | |
| ! | TACATACCGTTTGAAGTGCT+AGG | - | chr3_1:65443433-65443452 | Msa0368640:intron | 40.0% |
| ! | ACATACCGTTTGAAGTGCTA+GGG | - | chr3_1:65443434-65443453 | Msa0368640:intron | 40.0% |
| TATACCCCTAGCACTTCAAA+CGG | + | chr3_1:65443442-65443461 | None:intergenic | 40.0% | |
| ! | AAGCCACAAGTTGAACTTGA+TGG | - | chr3_1:65443552-65443571 | Msa0368640:intron | 40.0% |
| TTGCCATCAAGTTCAACTTG+TGG | + | chr3_1:65443558-65443577 | None:intergenic | 40.0% | |
| ! | ACAAGTTGAACTTGATGGCA+AGG | - | chr3_1:65443557-65443576 | Msa0368640:intron | 40.0% |
| GCGTCGTTCTCATTGAATAT+TGG | + | chr3_1:65443905-65443924 | None:intergenic | 40.0% | |
| !! | TTTATCAGCTTTGTTGGCCT+TGG | - | chr3_1:65444289-65444308 | Msa0368640:intron | 40.0% |
| !! | TTGATAGTGGATCACTTGGA+GGG | + | chr3_1:65444370-65444389 | None:intergenic | 40.0% |
| !! | TTTGATAGTGGATCACTTGG+AGG | + | chr3_1:65444371-65444390 | None:intergenic | 40.0% |
| AAATAAATCAGCAGTGCACC+TGG | + | chr3_1:65444534-65444553 | None:intergenic | 40.0% | |
| ATGCATCAACAAAGGAAAGG+GGG | + | chr3_1:65444695-65444714 | None:intergenic | 40.0% | |
| CCCACTTATGTGCATCTTTA+TGG | + | chr3_1:65444894-65444913 | None:intergenic | 40.0% | |
| ! | CGTACATCAACCTCTTTTGA+AGG | + | chr3_1:65444919-65444938 | None:intergenic | 40.0% |
| ! | ACTGAAGCTTGGTAATATCC+AGG | + | chr3_1:65445026-65445045 | None:intergenic | 40.0% |
| ACGAACGATATACTGAAGCT+TGG | + | chr3_1:65445037-65445056 | None:intergenic | 40.0% | |
| TTTCCTTTCTTCCGAAGACA+CGG | + | chr3_1:65445097-65445116 | None:intergenic | 40.0% | |
| AATCACGTGAGAAAGAGATC+AGG | - | chr3_1:65445148-65445167 | Msa0368640:intron | 40.0% | |
| AGCAGGATACGAAAAATCCT+TGG | - | chr3_1:65445206-65445225 | Msa0368640:intron | 40.0% | |
| ACGAAAAATCCTTGGTTGCT+AGG | - | chr3_1:65445214-65445233 | Msa0368640:intron | 40.0% | |
| !!! | GCTGGTTTTAAAGAGTGAGA+AGG | - | chr3_1:65445236-65445255 | Msa0368640:intron | 40.0% |
| GAGAAAACGTCATCTCCTTT+GGG | - | chr3_1:65445817-65445836 | Msa0368640:intron | 40.0% | |
| TTACCTGTACCAATGCATCA+GGG | + | chr3_1:65445870-65445889 | None:intergenic | 40.0% | |
| TTTACCTGTACCAATGCATC+AGG | + | chr3_1:65445871-65445890 | None:intergenic | 40.0% | |
| ! | GCCTTACTTTAGAAAAGCTG+TGG | - | chr3_1:65446009-65446028 | Msa0368640:intron | 40.0% |
| !!! | CCCACAGCTTTTCTAAAGTA+AGG | + | chr3_1:65446013-65446032 | None:intergenic | 40.0% |
| ! | ACTTTAGAAAAGCTGTGGGT+CGG | - | chr3_1:65446014-65446033 | Msa0368640:intron | 40.0% |
| TGAACCAACAGTATCAGGTA+TGG | + | chr3_1:65446415-65446434 | None:intergenic | 40.0% | |
| GTATTCACCTTAAGTAGCTC+AGG | + | chr3_1:65446474-65446493 | None:intergenic | 40.0% | |
| GCTGGATGATGTAATTGATC+TGG | - | chr3_1:65446591-65446610 | Msa0368640:CDS | 40.0% | |
| ATTGATCTGGTGATTCCAAG+AGG | - | chr3_1:65446604-65446623 | Msa0368640:CDS | 40.0% | |
| ACAAGTTTATTGCTGCCTCT+TGG | + | chr3_1:65446622-65446641 | None:intergenic | 40.0% | |
| TTGCAGTGCTTGATATGGTA+TGG | - | chr3_1:65446713-65446732 | Msa0368640:intron | 40.0% | |
| GCCATGGTAATTTAGTGTGT+TGG | - | chr3_1:65446905-65446924 | Msa0368640:intron | 40.0% | |
| TATTAGTGACGATTTGCGGT+CGG | - | chr3_1:65447048-65447067 | Msa0368640:intron | 40.0% | |
| TGATGTAATGAACGAGCAAG+TGG | + | chr3_1:65447284-65447303 | None:intergenic | 40.0% | |
| ! | ACATCATGAGTACTGTTCGT+TGG | - | chr3_1:65447298-65447317 | Msa0368640:CDS | 40.0% |
| AACATCATCCACGATTTCCA+AGG | + | chr3_1:65447330-65447349 | None:intergenic | 40.0% | |
| TATTTCTTCGTCAAGTCGAC+AGG | - | chr3_1:65447525-65447544 | Msa0368640:intron | 40.0% | |
| AACAATCCATCAACTCCTAC+TGG | + | chr3_1:65447975-65447994 | None:intergenic | 40.0% | |
| !! | TGACCATAATAGGCCTTGTT+TGG | - | chr3_1:65448189-65448208 | Msa0368640:intron | 40.0% |
| ! | TGGTGTTTATAGGGCTTGTT+TGG | + | chr3_1:65448468-65448487 | None:intergenic | 40.0% |
| CATGTTTCCTTCCCAACATT+AGG | - | chr3_1:65448803-65448822 | Msa0368640:intron | 40.0% | |
| CCAATTTCCTAATGTTGGGA+AGG | + | chr3_1:65448813-65448832 | None:intergenic | 40.0% | |
| CCTTCCCAACATTAGGAAAT+TGG | - | chr3_1:65448810-65448829 | Msa0368640:intron | 40.0% | |
| TTGTTACTCGCCAAGATGGA+AGG | - | chr3_1:65443053-65443072 | Msa0368640:three_prime_UTR | 45.0% | |
| CAACTGCTAACCTTCCATCT+TGG | + | chr3_1:65443066-65443085 | None:intergenic | 45.0% | |
| CAAGATGGAAGGTTAGCAGT+TGG | - | chr3_1:65443064-65443083 | Msa0368640:three_prime_UTR | 45.0% | |
| ! | TTGGTTTCATCAGGTGCTGT+TGG | - | chr3_1:65443243-65443262 | Msa0368640:intron | 45.0% |
| ! | CATACCGTTTGAAGTGCTAG+GGG | - | chr3_1:65443435-65443454 | Msa0368640:intron | 45.0% |
| GTTCAACTTGTGGCTTCTGA+AGG | + | chr3_1:65443548-65443567 | None:intergenic | 45.0% | |
| TGTTGGACAAAGCAGCCTTA+TGG | - | chr3_1:65443590-65443609 | Msa0368640:intron | 45.0% | |
| CTACCTGTTTGTCTTGTAGC+TGG | - | chr3_1:65443772-65443791 | Msa0368640:CDS | 45.0% | |
| CATCCAGCTACAAGACAAAC+AGG | + | chr3_1:65443778-65443797 | None:intergenic | 45.0% | |
| TACTAGGAAAGCTCCATACG+AGG | - | chr3_1:65443931-65443950 | Msa0368640:CDS | 45.0% | |
| ! | TTTGGAGACAAGTCTAGGGT+TGG | - | chr3_1:65444437-65444456 | Msa0368640:CDS | 45.0% |
| ! | ACAAGTCTAGGGTTGGAAGA+GGG | - | chr3_1:65444444-65444463 | Msa0368640:CDS | 45.0% |
| ! | GTGCACCTGGTAATGATAAC+AGG | + | chr3_1:65444521-65444540 | None:intergenic | 45.0% |
| ATTCTCCAAGGACAGCGTAT+TGG | - | chr3_1:65444859-65444878 | Msa0368640:CDS | 45.0% | |
| TAAGTGGGTCCCTTCAAAAG+AGG | - | chr3_1:65444906-65444925 | Msa0368640:intron | 45.0% | |
| AGAAAATGTCTCTCGGATCC+TGG | - | chr3_1:65445005-65445024 | Msa0368640:intron | 45.0% | |
| ACGGCCTGTAACGTAAGATT+AGG | + | chr3_1:65445078-65445097 | None:intergenic | 45.0% | |
| AAAATCCTTGGTTGCTAGGC+TGG | - | chr3_1:65445218-65445237 | Msa0368640:intron | 45.0% | |
| TAAAACCAGCCTAGCAACCA+AGG | + | chr3_1:65445226-65445245 | None:intergenic | 45.0% | |
| GCAAACATGGAAGATCCGAT+TGG | - | chr3_1:65445404-65445423 | Msa0368640:intron | 45.0% | |
| ! | GCTTGCAGAGGGGTTAATTT+TGG | - | chr3_1:65445795-65445814 | Msa0368640:intron | 45.0% |
| GGAGAAAACGTCATCTCCTT+TGG | - | chr3_1:65445816-65445835 | Msa0368640:intron | 45.0% | |
| AGATACTGTCTACCAAGCTG+TGG | - | chr3_1:65445981-65446000 | Msa0368640:intron | 45.0% | |
| GATACTGTCTACCAAGCTGT+GGG | - | chr3_1:65445982-65446001 | Msa0368640:intron | 45.0% | |
| CTTCCTTGGCAATACGAAGT+GGG | - | chr3_1:65446218-65446237 | Msa0368640:intron | 45.0% | |
| ATTCCCACTTCGTATTGCCA+AGG | + | chr3_1:65446224-65446243 | None:intergenic | 45.0% | |
| TTGGCAATACGAAGTGGGAA+TGG | - | chr3_1:65446223-65446242 | Msa0368640:intron | 45.0% | |
| TGGCAATACGAAGTGGGAAT+GGG | - | chr3_1:65446224-65446243 | Msa0368640:intron | 45.0% | |
| ! | AATGGGCTTCTCTTGAAAGG+AGG | - | chr3_1:65446241-65446260 | Msa0368640:intron | 45.0% |
| GAAGCCATACCTGATACTGT+TGG | - | chr3_1:65446408-65446427 | Msa0368640:intron | 45.0% | |
| TGTGGCACATTTCACTAAGC+TGG | - | chr3_1:65446544-65446563 | Msa0368640:CDS | 45.0% | |
| TCGACGAAAATCCCTGTTCT+AGG | - | chr3_1:65446658-65446677 | Msa0368640:intron | 45.0% | |
| TACCAGCATGACCTAGAACA+GGG | + | chr3_1:65446672-65446691 | None:intergenic | 45.0% | |
| TTACCAGCATGACCTAGAAC+AGG | + | chr3_1:65446673-65446692 | None:intergenic | 45.0% | |
| ! | AGGATTTGGTAGAGAAAGGC+TGG | - | chr3_1:65447017-65447036 | Msa0368640:intron | 45.0% |
| GTATGTGCACTGCCATAATG+GGG | + | chr3_1:65447467-65447486 | None:intergenic | 45.0% | |
| GGTATGTGCACTGCCATAAT+GGG | + | chr3_1:65447468-65447487 | None:intergenic | 45.0% | |
| GCTAGTACAAGATTCAGCGA+TGG | - | chr3_1:65447796-65447815 | Msa0368640:CDS | 45.0% | |
| ! | GATGGAGCACGATTTGGATT+AGG | - | chr3_1:65447814-65447833 | Msa0368640:CDS | 45.0% |
| AGGTTGGAATAAGCACAAGC+AGG | - | chr3_1:65447934-65447953 | Msa0368640:intron | 45.0% | |
| GCGACTGTTTATGAGAGCTA+TGG | + | chr3_1:65448405-65448424 | None:intergenic | 45.0% | |
| ! | TTCCTTTGAGAAGCCTGCAT+TGG | + | chr3_1:65448531-65448550 | None:intergenic | 45.0% |
| GGAAGTGGACAAGTAGTAGA+TGG | - | chr3_1:65448547-65448566 | Msa0368640:intron | 45.0% | |
| AGTTAGGTCTTTGTGGGTGT+AGG | + | chr3_1:65448587-65448606 | None:intergenic | 45.0% | |
| TGAAAATCCGCATGAAGCGA+CGG | - | chr3_1:65448623-65448642 | Msa0368640:CDS | 45.0% | |
| !! | AATTTAAATAACATATATTA+AGG | + | chr3_1:65446967-65446986 | None:intergenic | 5.0% |
| !!! | TTAATTTATCATTATATTTT+GGG | - | chr3_1:65447904-65447923 | Msa0368640:CDS | 5.0% |
| GTGGAGAGAAACAGGGATGA+AGG | + | chr3_1:65442818-65442837 | None:intergenic | 50.0% | |
| !! | CGGTTTGGTGGAGAGAAACA+GGG | + | chr3_1:65442825-65442844 | None:intergenic | 50.0% |
| !! | TCGGTTTGGTGGAGAGAAAC+AGG | + | chr3_1:65442826-65442845 | None:intergenic | 50.0% |
| TCTCTCCACCAAACCGAAGA+TGG | - | chr3_1:65442829-65442848 | Msa0368640:three_prime_UTR | 50.0% | |
| GCTGTTGTTACTCGCCAAGA+TGG | - | chr3_1:65443049-65443068 | Msa0368640:three_prime_UTR | 50.0% | |
| ATCTAAGCCTTTGTCGACCG+AGG | + | chr3_1:65443269-65443288 | None:intergenic | 50.0% | |
| ATGGGGGCTTCACAACAACA+TGG | - | chr3_1:65443353-65443372 | Msa0368640:intron | 50.0% | |
| TGGGGGCTTCACAACAACAT+GGG | - | chr3_1:65443354-65443373 | Msa0368640:intron | 50.0% | |
| AGAACGACGCAGTCAGTACT+AGG | - | chr3_1:65443915-65443934 | Msa0368640:CDS | 50.0% | |
| ! | GACAAGTCTAGGGTTGGAAG+AGG | - | chr3_1:65444443-65444462 | Msa0368640:CDS | 50.0% |
| ! | CAAGTCTAGGGTTGGAAGAG+GGG | - | chr3_1:65444445-65444464 | Msa0368640:CDS | 50.0% |
| ! | AAGTCTAGGGTTGGAAGAGG+GGG | - | chr3_1:65444446-65444465 | Msa0368640:CDS | 50.0% |
| TCTGTTCATGCTGCTGATGC+CGG | - | chr3_1:65444491-65444510 | Msa0368640:intron | 50.0% | |
| !! | AGAGGTTGATGTACGCGAGA+TGG | - | chr3_1:65444924-65444943 | Msa0368640:intron | 50.0% |
| TAAAGAGACCTGAAGCCGTC+TGG | + | chr3_1:65444971-65444990 | None:intergenic | 50.0% | |
| TACGTTACAGGCCGTGTCTT+CGG | - | chr3_1:65445083-65445102 | Msa0368640:CDS | 50.0% | |
| GTTGTTGCTGCACAAGAAGC+AGG | - | chr3_1:65445189-65445208 | Msa0368640:intron | 50.0% | |
| GCTTCCTTGGCAATACGAAG+TGG | - | chr3_1:65446217-65446236 | Msa0368640:intron | 50.0% | |
| ! | GGGAATGGGCTTCTCTTGAA+AGG | - | chr3_1:65446238-65446257 | Msa0368640:intron | 50.0% |
| GCTTCTCTTGAAAGGAGGCA+AGG | - | chr3_1:65446246-65446265 | Msa0368640:intron | 50.0% | |
| TCTCTTGAAAGGAGGCAAGG+AGG | - | chr3_1:65446249-65446268 | Msa0368640:intron | 50.0% | |
| ! | ATCCCTGTTCTAGGTCATGC+TGG | - | chr3_1:65446667-65446686 | Msa0368640:intron | 50.0% |
| TCCATCAGGATGCAATGCCA+TGG | - | chr3_1:65446889-65446908 | Msa0368640:intron | 50.0% | |
| ACCATGGCATTGCATCCTGA+TGG | + | chr3_1:65446893-65446912 | None:intergenic | 50.0% | |
| CGGTATGTGCACTGCCATAA+TGG | + | chr3_1:65447469-65447488 | None:intergenic | 50.0% | |
| TTCAGCGATGGAGCACGATT+TGG | - | chr3_1:65447808-65447827 | Msa0368640:CDS | 50.0% | |
| ! | ACGATTTGGATTAGGCGCAG+AGG | - | chr3_1:65447822-65447841 | Msa0368640:CDS | 50.0% |
| GCACAAGCAGGATTCATGCT+CGG | - | chr3_1:65447946-65447965 | Msa0368640:intron | 50.0% | |
| CACAAGCAGGATTCATGCTC+GGG | - | chr3_1:65447947-65447966 | Msa0368640:intron | 50.0% | |
| ACAAGCAGGATTCATGCTCG+GGG | - | chr3_1:65447948-65447967 | Msa0368640:intron | 50.0% | |
| !! | GAGCATCGGCTTATACCATC+TGG | + | chr3_1:65448003-65448022 | None:intergenic | 50.0% |
| TGCCAATGCAGGCTTCTCAA+AGG | - | chr3_1:65448526-65448545 | Msa0368640:intron | 50.0% | |
| TGCAGGCTTCTCAAAGGAAG+TGG | - | chr3_1:65448532-65448551 | Msa0368640:intron | 50.0% | |
| !! | GTTCGCCATCTTCGGTTTGG+TGG | + | chr3_1:65442837-65442856 | None:intergenic | 55.0% |
| !! | ATTAGGGGCACTCTGTGAGC+AGG | - | chr3_1:65443090-65443109 | Msa0368640:three_prime_UTR | 55.0% |
| !! | TCATCAGGTGCTGTTGGCCT+CGG | - | chr3_1:65443249-65443268 | Msa0368640:intron | 55.0% |
| GGGGGCTTCACAACAACATG+GGG | - | chr3_1:65443355-65443374 | Msa0368640:intron | 55.0% | |
| GGGGCTTCACAACAACATGG+GGG | - | chr3_1:65443356-65443375 | Msa0368640:intron | 55.0% | |
| GGGCTTCACAACAACATGGG+GGG | - | chr3_1:65443357-65443376 | Msa0368640:intron | 55.0% | |
| GGGTACCAATACGCTGTCCT+TGG | + | chr3_1:65444867-65444886 | None:intergenic | 55.0% | |
| AGGCCGTGTCTTCGGAAGAA+AGG | - | chr3_1:65445091-65445110 | Msa0368640:CDS | 55.0% | |
| ! | TCGCCCTGATGCATTGGTAC+AGG | - | chr3_1:65445864-65445883 | Msa0368640:CDS | 55.0% |
| CTGTCTACCAAGCTGTGGGT+CGG | - | chr3_1:65445986-65446005 | Msa0368640:intron | 55.0% | |
| TGTCTACCAAGCTGTGGGTC+GGG | - | chr3_1:65445987-65446006 | Msa0368640:intron | 55.0% | |
| AGTGACGATTTGCGGTCGGA+AGG | - | chr3_1:65447052-65447071 | Msa0368640:intron | 55.0% | |
| !! | CTGTTCGTTGGCTTGCACCT+TGG | - | chr3_1:65447310-65447329 | Msa0368640:CDS | 55.0% |
| GGCTTGCACCTTGGAAATCG+TGG | - | chr3_1:65447319-65447338 | Msa0368640:CDS | 55.0% | |
| ATTCATGCTCGGGGTCCAGT+AGG | - | chr3_1:65447957-65447976 | Msa0368640:intron | 55.0% | |
| GGCGTTCGCCATCTTCGGTT+TGG | + | chr3_1:65442840-65442859 | None:intergenic | 60.0% | |
| ! | CTGTTGGCCTCGGTCGACAA+AGG | - | chr3_1:65443259-65443278 | Msa0368640:intron | 60.0% |
| ! | GGCAAGGCTTGTGCTGCTGT+TGG | - | chr3_1:65443573-65443592 | Msa0368640:intron | 60.0% |
| CGAGATGGCTGTTGCCGCTA+GGG | - | chr3_1:65444939-65444958 | Msa0368640:intron | 60.0% | |
| ! | CCGTCTGGAACAGTCCCTAG+CGG | + | chr3_1:65444956-65444975 | None:intergenic | 60.0% |
| CCGCTAGGGACTGTTCCAGA+CGG | - | chr3_1:65444953-65444972 | Msa0368640:intron | 60.0% | |
| GGACTGTTCCAGACGGCTTC+AGG | - | chr3_1:65444960-65444979 | Msa0368640:intron | 60.0% | |
| CGAGTCTCGCCCTGATGCAT+TGG | - | chr3_1:65445858-65445877 | Msa0368640:CDS | 60.0% | |
| CGGGGTCCAGTAGGAGTTGA+TGG | - | chr3_1:65447966-65447985 | Msa0368640:intron | 60.0% | |
| AATCCGCATGAAGCGACGGC+AGG | - | chr3_1:65448627-65448646 | Msa0368640:CDS | 60.0% | |
| TTGCCTGCCGTCGCTTCATG+CGG | + | chr3_1:65448633-65448652 | None:intergenic | 60.0% | |
| GGGTCGGCGTTCGCCATCTT+CGG | + | chr3_1:65442845-65442864 | None:intergenic | 65.0% | |
| GCGAGATGGCTGTTGCCGCT+AGG | - | chr3_1:65444938-65444957 | Msa0368640:intron | 65.0% | |
| GTAAGGCCCGACCCACAGCT+TGG | + | chr3_1:65445996-65446015 | None:intergenic | 65.0% | |
| GCATGAAGCGACGGCAGGCA+AGG | - | chr3_1:65448632-65448651 | Msa0368640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65442761 | 65448969 | 65442761 | ID=Msa0368640;Name=Msa0368640 |
| chr3_1 | mRNA | 65442761 | 65448969 | 65442761 | ID=Msa0368640-mRNA-1;Parent=Msa0368640;Name=Msa0368640-mRNA-1;_AED=0.12;_eAED=0.12;_QI=87|0.94|0.95|1|1|1|20|357|718 |
| chr3_1 | exon | 65442761 | 65443193 | 65442761 | ID=Msa0368640-mRNA-1:exon:13137;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65443724 | 65443794 | 65443724 | ID=Msa0368640-mRNA-1:exon:13136;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65443887 | 65443953 | 65443887 | ID=Msa0368640-mRNA-1:exon:13135;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65444184 | 65444252 | 65444184 | ID=Msa0368640-mRNA-1:exon:13134;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65444346 | 65444496 | 65444346 | ID=Msa0368640-mRNA-1:exon:13133;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65444657 | 65444732 | 65444657 | ID=Msa0368640-mRNA-1:exon:13132;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65444820 | 65444923 | 65444820 | ID=Msa0368640-mRNA-1:exon:13131;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65445042 | 65445138 | 65445042 | ID=Msa0368640-mRNA-1:exon:13130;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65445245 | 65445331 | 65445245 | ID=Msa0368640-mRNA-1:exon:13129;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65445430 | 65445516 | 65445430 | ID=Msa0368640-mRNA-1:exon:13128;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65445845 | 65445934 | 65445845 | ID=Msa0368640-mRNA-1:exon:13127;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65446282 | 65446352 | 65446282 | ID=Msa0368640-mRNA-1:exon:13126;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65446457 | 65446637 | 65446457 | ID=Msa0368640-mRNA-1:exon:13125;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65446749 | 65446899 | 65446749 | ID=Msa0368640-mRNA-1:exon:13124;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65447196 | 65447473 | 65447196 | ID=Msa0368640-mRNA-1:exon:13123;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65447778 | 65447939 | 65447778 | ID=Msa0368640-mRNA-1:exon:13122;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65448092 | 65448194 | 65448092 | ID=Msa0368640-mRNA-1:exon:13121;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65448420 | 65448523 | 65448420 | ID=Msa0368640-mRNA-1:exon:13120;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65448619 | 65448690 | 65448619 | ID=Msa0368640-mRNA-1:exon:13119;Parent=Msa0368640-mRNA-1 |
| chr3_1 | exon | 65448823 | 65448969 | 65448823 | ID=Msa0368640-mRNA-1:exon:13118;Parent=Msa0368640-mRNA-1 |
| chr3_1 | five_prime_UTR | 65448883 | 65448969 | 65448883 | ID=Msa0368640-mRNA-1:five_prime_utr;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65448823 | 65448882 | 65448823 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65448619 | 65448690 | 65448619 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65448420 | 65448523 | 65448420 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65448092 | 65448194 | 65448092 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65447778 | 65447939 | 65447778 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65447196 | 65447473 | 65447196 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65446749 | 65446899 | 65446749 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65446457 | 65446637 | 65446457 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65446282 | 65446352 | 65446282 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65445845 | 65445934 | 65445845 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65445430 | 65445516 | 65445430 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65445245 | 65445331 | 65445245 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65445042 | 65445138 | 65445042 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65444820 | 65444923 | 65444820 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65444657 | 65444732 | 65444657 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65444346 | 65444496 | 65444346 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65444184 | 65444252 | 65444184 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65443887 | 65443953 | 65443887 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65443724 | 65443794 | 65443724 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | CDS | 65443118 | 65443193 | 65443118 | ID=Msa0368640-mRNA-1:cds;Parent=Msa0368640-mRNA-1 |
| chr3_1 | three_prime_UTR | 65442761 | 65443117 | 65442761 | ID=Msa0368640-mRNA-1:three_prime_utr;Parent=Msa0368640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
