Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449780 | A0A072TW30 | 99.194 | 992 | 8 | 0 | 1 | 992 | 1 | 992 | 0.0 | 2027 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa1449780 | 0.802399 | 5.715251e-49 | -8.615850e-47 |
| Msa1449780 | Msa1462740 | 0.988183 | 4.978022e-173 | -8.615850e-47 |
| Msa1259160 | Msa1449780 | 0.804563 | 2.034616e-49 | -8.615850e-47 |
| Msa1299650 | Msa1449780 | 0.804759 | 1.851291e-49 | -8.615850e-47 |
| Msa1306470 | Msa1449780 | 0.965402 | 1.475065e-124 | -8.615850e-47 |
| Msa0368640 | Msa1449780 | 0.801120 | 1.045758e-48 | -8.615850e-47 |
| Msa0480280 | Msa1449780 | 0.800102 | 1.687355e-48 | -8.615850e-47 |
| Msa1210040 | Msa1449780 | 0.805345 | 1.396247e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449780 | MtrunA17_Chr8g0387111 | 99.194 | 992 | 8 | 0 | 1 | 992 | 1 | 992 | 0.0 | 2027 |
| Msa1449780 | MtrunA17_Chr3g0079761 | 36.384 | 874 | 488 | 18 | 142 | 988 | 157 | 989 | 9.89e-179 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449780 | AT4G23440.2 | 62.714 | 995 | 321 | 17 | 8 | 992 | 7 | 961 | 0.0 | 1230 |
| Msa1449780 | AT4G23440.1 | 62.714 | 995 | 321 | 17 | 8 | 992 | 7 | 961 | 0.0 | 1230 |
| Msa1449780 | AT5G56220.2 | 35.984 | 981 | 538 | 21 | 28 | 988 | 63 | 973 | 0.0 | 589 |
| Msa1449780 | AT5G56220.1 | 35.984 | 981 | 538 | 21 | 28 | 988 | 63 | 973 | 0.0 | 589 |
Find 198 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGATGATTGCTATTC+TGG | 0.168986 | tig0032705:+11695 | Msa1449780:CDS |
| ATTCTTGTTGCTAGGCTCTT+AGG | 0.170857 | tig0032705:-13444 | None:intergenic |
| TGGATCTTCTCCCTCGTTTC+GGG | 0.175608 | tig0032705:+13046 | Msa1449780:CDS |
| CTTCAAGGGCATCCTGTTTA+TGG | 0.176325 | tig0032705:-13316 | None:intergenic |
| CTTTGGCAGCAATGAGTTTA+AGG | 0.176701 | tig0032705:+11369 | Msa1449780:CDS |
| TTGGAGAAAACAAGTATAAA+AGG | 0.233678 | tig0032705:+12898 | Msa1449780:CDS |
| CTCAGTTGAATCCTTGTCTT+TGG | 0.246198 | tig0032705:+14075 | Msa1449780:CDS |
| TTCAGCTCCTCAATGGTATA+TGG | 0.272131 | tig0032705:-12022 | None:intergenic |
| ATGGATCTTCTCCCTCGTTT+CGG | 0.280352 | tig0032705:+13045 | Msa1449780:CDS |
| AAGAGTCTGCTTGGTGTTAT+AGG | 0.281040 | tig0032705:-13288 | None:intergenic |
| ATAGCACCATCTTGTATCTT+TGG | 0.281416 | tig0032705:-12789 | None:intergenic |
| CTAAAACTTTCATACTTATC+TGG | 0.290288 | tig0032705:+13126 | Msa1449780:CDS |
| GCTCTTCGATGTTTGTTTCT+CGG | 0.293083 | tig0032705:+13401 | Msa1449780:CDS |
| CGGGACCAAATTCTTCTTGC+TGG | 0.301223 | tig0032705:-12053 | None:intergenic |
| ATGAAAGAAATGAAAGTAGT+AGG | 0.301352 | tig0032705:+12542 | Msa1449780:CDS |
| TTTCTCCAGCAAGAAGAATT+TGG | 0.305624 | tig0032705:+12048 | Msa1449780:CDS |
| GTTTGATGAGTTCATTGAAT+TGG | 0.311310 | tig0032705:-13695 | None:intergenic |
| TTCCTCCACCTTTGGACCTT+TGG | 0.313442 | tig0032705:+11352 | Msa1449780:CDS |
| AAATGACACGACGACGTTCT+TGG | 0.317499 | tig0032705:-11449 | None:intergenic |
| TCGCCGAGCATTTGAGAAAA+TGG | 0.318891 | tig0032705:+12323 | Msa1449780:CDS |
| TCTGACTCCTTCCACAAAAC+TGG | 0.337643 | tig0032705:-12577 | None:intergenic |
| TCTCCAGCTGCCTGTACTTC+AGG | 0.338303 | tig0032705:+11599 | Msa1449780:CDS |
| GCATGTGTATCAGGAGATTC+AGG | 0.348944 | tig0032705:+12721 | Msa1449780:CDS |
| CAACTGAGCATTAGTTTGAA+TGG | 0.353807 | tig0032705:-14060 | None:intergenic |
| AAAGGTATTGCATGTGTATC+AGG | 0.354608 | tig0032705:+12712 | Msa1449780:CDS |
| CTCTGCAATGACAAGCTTGT+TGG | 0.357217 | tig0032705:-11939 | None:intergenic |
| GCTAGGAAAAGAGAAGTTAT+TGG | 0.361654 | tig0032705:+13723 | Msa1449780:CDS |
| ATTCTGTCATTTGAAGCTTC+AGG | 0.363962 | tig0032705:-11488 | None:intergenic |
| GCTATGGACGTTGCTTCTTT+CGG | 0.373927 | tig0032705:+11965 | Msa1449780:CDS |
| AGAGGGGCACAATTTGATAT+AGG | 0.375105 | tig0032705:+14155 | Msa1449780:CDS |
| ATCTCTAGTAGCACCATATC+TGG | 0.376967 | tig0032705:+11662 | Msa1449780:CDS |
| GGACTCAGATCAAAGTATAT+CGG | 0.382250 | tig0032705:-12073 | None:intergenic |
| GTCCATTTGATTGTCTTGTA+AGG | 0.382998 | tig0032705:+12092 | Msa1449780:CDS |
| AAAATGGAAAGAGAAAATTA+AGG | 0.383247 | tig0032705:+12339 | Msa1449780:CDS |
| GCAAGTGCTAACAATGAAAC+TGG | 0.387890 | tig0032705:-13504 | None:intergenic |
| GAAGAAAGTTCCTCCACCTT+TGG | 0.391834 | tig0032705:+11344 | Msa1449780:CDS |
| TTCTTGTTGCTAGGCTCTTA+GGG | 0.392871 | tig0032705:-13443 | None:intergenic |
| GTATCAGGAGATTCAGGAAT+TGG | 0.394294 | tig0032705:+12727 | Msa1449780:CDS |
| GTAAAGAAGCTCACGCCTTC+CGG | 0.394828 | tig0032705:+13358 | Msa1449780:CDS |
| GAATATGTCTTCGTCGTCTT+CGG | 0.397426 | tig0032705:+11391 | Msa1449780:CDS |
| AAGGGATATAATTGAGAAAA+GGG | 0.399396 | tig0032705:+12111 | Msa1449780:CDS |
| CCTTCCTCGCGTCATGAACT+TGG | 0.399410 | tig0032705:+13098 | Msa1449780:CDS |
| TCTTGTGATCATTGATAACT+TGG | 0.400919 | tig0032705:+12987 | Msa1449780:CDS |
| TAACTCGGCACACAACCATT+TGG | 0.407147 | tig0032705:-11864 | None:intergenic |
| TCCAGAATAGCAATCATCAT+AGG | 0.409912 | tig0032705:-11696 | None:intergenic |
| AAGCTTGGAAGGTTAACTTT+AGG | 0.410083 | tig0032705:+13231 | Msa1449780:CDS |
| TGAGAAAAGGGGTGAGTTGT+GGG | 0.412661 | tig0032705:+12123 | Msa1449780:CDS |
| TAAGGGATATAATTGAGAAA+AGG | 0.414196 | tig0032705:+12110 | Msa1449780:CDS |
| TGAAAGAAATGAAAGTAGTA+GGG | 0.416453 | tig0032705:+12543 | Msa1449780:CDS |
| TGTGAGTGTTGAGAATAGTT+TGG | 0.416592 | tig0032705:+12879 | Msa1449780:CDS |
| AGGGTCAATATCTCAACATC+TGG | 0.421115 | tig0032705:+13782 | Msa1449780:CDS |
| CCCTCTCTCGGGTCGAAGAA+TGG | 0.421987 | tig0032705:+12215 | Msa1449780:CDS |
| CGACCGGTGTAACTAATGTT+TGG | 0.427622 | tig0032705:-14004 | None:intergenic |
| GAGGGGCACAATTTGATATA+GGG | 0.428606 | tig0032705:+14156 | Msa1449780:CDS |
| ACTTTAGGCCTCGCCATCAT+TGG | 0.441337 | tig0032705:+13246 | Msa1449780:CDS |
| GAAAGAGAAAATTAAGGAAG+AGG | 0.442204 | tig0032705:+12345 | Msa1449780:CDS |
| TGGAAGCTCAGGATGGAAAC+TGG | 0.442332 | tig0032705:+12242 | Msa1449780:CDS |
| CTCAACATCTGGATCATTTG+TGG | 0.442767 | tig0032705:+13793 | Msa1449780:CDS |
| AATGCTCGGCGACACTTCTT+CGG | 0.444558 | tig0032705:-12312 | None:intergenic |
| ATGCTGTCCATGCCCTCTCT+CGG | 0.444658 | tig0032705:+12203 | Msa1449780:CDS |
| TCAGTTGCTTTGTATCAGAT+AGG | 0.444844 | tig0032705:+11900 | Msa1449780:CDS |
| GCAGAAGAAAAGTGTTCTTC+CGG | 0.448634 | tig0032705:-13377 | None:intergenic |
| CCATGAAGACATCTCCTTCA+AGG | 0.448705 | tig0032705:-13331 | None:intergenic |
| CTCAGCGGCACTACCGTTCG+AGG | 0.456839 | tig0032705:+12632 | Msa1449780:CDS |
| GGAAGTGAAACCACAGGTTA+AGG | 0.459113 | tig0032705:-13586 | None:intergenic |
| CTGCATATCACCTGAAGTAC+AGG | 0.462098 | tig0032705:-11609 | None:intergenic |
| AAGATAAGGGAACTTGTTTG+TGG | 0.464392 | tig0032705:+13547 | Msa1449780:CDS |
| TGATAAAATTCCACCAATGA+TGG | 0.465348 | tig0032705:-13259 | None:intergenic |
| AAAGAAAGAGCTTTCTCAGT+TGG | 0.467486 | tig0032705:+12405 | Msa1449780:CDS |
| TCAACATCTGGATCATTTGT+GGG | 0.472212 | tig0032705:+13794 | Msa1449780:CDS |
| GACTCAGATCAAAGTATATC+GGG | 0.474481 | tig0032705:-12072 | None:intergenic |
| CCTTGAAGGAGATGTCTTCA+TGG | 0.475454 | tig0032705:+13331 | Msa1449780:CDS |
| TGCTGTCCATGCCCTCTCTC+GGG | 0.476784 | tig0032705:+12204 | Msa1449780:CDS |
| CATAAACAGGATGCCCTTGA+AGG | 0.483188 | tig0032705:+13317 | Msa1449780:CDS |
| GGGATGGCAGTAACCAGATA+TGG | 0.485467 | tig0032705:-11675 | None:intergenic |
| AATTTGTGGTGATGATCATC+CGG | 0.486755 | tig0032705:+14217 | Msa1449780:CDS |
| ACTTGGAAAGCGAAACTGAT+TGG | 0.486832 | tig0032705:+13004 | Msa1449780:CDS |
| TCCCTTACAAGACAATCAAA+TGG | 0.489954 | tig0032705:-12094 | None:intergenic |
| AAAAGAAGGCATTTGACCAT+TGG | 0.490531 | tig0032705:+12496 | Msa1449780:CDS |
| AACGCAGTGGTAAGTATAGT+AGG | 0.491664 | tig0032705:+12659 | Msa1449780:CDS |
| CCTCGAGCTCGACAACCGTT+GGG | 0.492301 | tig0032705:-13851 | None:intergenic |
| CAAGTACCATTCTTGTTGCT+AGG | 0.494073 | tig0032705:-13452 | None:intergenic |
| GACTCTTAGATACCATAAAC+AGG | 0.496175 | tig0032705:+13304 | Msa1449780:CDS |
| TTAGGCCTCGCCATCATTGG+TGG | 0.497790 | tig0032705:+13249 | Msa1449780:CDS |
| AGAATGGAAGTTGGAAGCTC+AGG | 0.498559 | tig0032705:+12231 | Msa1449780:CDS |
| TTGAGAAAAGGGGTGAGTTG+TGG | 0.498606 | tig0032705:+12122 | Msa1449780:CDS |
| TATTGGATCTTCACATGCAA+TGG | 0.498885 | tig0032705:+13740 | Msa1449780:CDS |
| CAATGAAACTGGAATGGGAC+TGG | 0.502774 | tig0032705:-13493 | None:intergenic |
| GAGCTAAGCTTATGCTAAGA+GGG | 0.503364 | tig0032705:+14138 | Msa1449780:CDS |
| ACATTGTTAGCAATGAGGTT+AGG | 0.503511 | tig0032705:+12289 | Msa1449780:CDS |
| TCCATTTGATTGTCTTGTAA+GGG | 0.506586 | tig0032705:+12093 | Msa1449780:CDS |
| AAAGAGAGGCGAAGTAAGAA+AGG | 0.508110 | tig0032705:+11722 | Msa1449780:CDS |
| GCAAGATTATATTGAACTCA+AGG | 0.511718 | tig0032705:+12465 | Msa1449780:CDS |
| TTTATCAGGAGTTCAATTTG+TGG | 0.512741 | tig0032705:+14203 | Msa1449780:CDS |
| TTTGTATGGAGGGTTGAAGC+AGG | 0.513984 | tig0032705:+12171 | Msa1449780:CDS |
| ATGGTATCTAAGAGTCTGCT+TGG | 0.515528 | tig0032705:-13297 | None:intergenic |
| AGAACAATTGAGGAGAAGCT+TGG | 0.520523 | tig0032705:+13216 | Msa1449780:CDS |
| ACCTCGAGCTCGACAACCGT+TGG | 0.521798 | tig0032705:-13852 | None:intergenic |
| CAAGCTTGTCATTGCAGAGA+AGG | 0.522391 | tig0032705:+11943 | Msa1449780:CDS |
| TAGGAAGAAAAGAGGAGTGA+AGG | 0.522607 | tig0032705:+12678 | Msa1449780:CDS |
| TAGTTACACCGGTCGATAAG+TGG | 0.525503 | tig0032705:+14012 | Msa1449780:CDS |
| TCACCTGAAGTACAGGCAGC+TGG | 0.525786 | tig0032705:-11602 | None:intergenic |
| TTGGAAAATCTTACAAGAGG+AGG | 0.526110 | tig0032705:-11845 | None:intergenic |
| AGAGCTAAGCTTATGCTAAG+AGG | 0.526272 | tig0032705:+14137 | Msa1449780:CDS |
| TGCTAACAATGAAACTGGAA+TGG | 0.528855 | tig0032705:-13499 | None:intergenic |
| CAGTTGCTTTGTATCAGATA+GGG | 0.529154 | tig0032705:+11901 | Msa1449780:CDS |
| AAGGCATTTGACCATTGGTA+GGG | 0.530952 | tig0032705:+12501 | Msa1449780:CDS |
| AGCAAAACTATCTAAACCTC+AGG | 0.532436 | tig0032705:+12839 | Msa1449780:CDS |
| TCGGTATTTGATCACGCAGA+CGG | 0.535576 | tig0032705:+13420 | Msa1449780:CDS |
| AAGTATAGTAGGAAGAAAAG+AGG | 0.535877 | tig0032705:+12670 | Msa1449780:CDS |
| TGCTAAGTTTCAACATTGCA+AGG | 0.536485 | tig0032705:+13649 | Msa1449780:CDS |
| TCGCGAGCAAATATAGTATC+CGG | 0.536849 | tig0032705:-14236 | None:intergenic |
| ACAAGAATGGTACTTGTAAG+TGG | 0.537495 | tig0032705:+13459 | Msa1449780:CDS |
| GAAGGCATTTGACCATTGGT+AGG | 0.538042 | tig0032705:+12500 | Msa1449780:CDS |
| TCAAGGCAAGATCGAAAAGA+AGG | 0.541335 | tig0032705:+12482 | Msa1449780:CDS |
| GGTTCGACAAATCACTCTGT+TGG | 0.544300 | tig0032705:+14033 | Msa1449780:CDS |
| TCGGGTCGAAGAATGGAAGT+TGG | 0.544406 | tig0032705:+12222 | Msa1449780:CDS |
| CTTAAACTCATTGCTGCCAA+AGG | 0.548486 | tig0032705:-11368 | None:intergenic |
| CAAGAATCCATATACCATTG+AGG | 0.550407 | tig0032705:+12015 | Msa1449780:CDS |
| TGATGCTCTGAGAACAATTG+AGG | 0.550856 | tig0032705:+13206 | Msa1449780:CDS |
| TGTGCCGAGTTAGAAATTCA+CGG | 0.551801 | tig0032705:+11875 | Msa1449780:CDS |
| CATGAAGACATCTCCTTCAA+GGG | 0.552668 | tig0032705:-13330 | None:intergenic |
| AACTCATCAAACTATATGCT+AGG | 0.554120 | tig0032705:+13706 | Msa1449780:CDS |
| CCAGAATAGCAATCATCATA+GGG | 0.554735 | tig0032705:-11695 | None:intergenic |
| TACCTACCGAGGAAGATATA+CGG | 0.554833 | tig0032705:-11640 | None:intergenic |
| CCCAACGGTTGTCGAGCTCG+AGG | 0.556046 | tig0032705:+13851 | Msa1449780:CDS |
| GCTAACAATGAAACTGGAAT+GGG | 0.556645 | tig0032705:-13498 | None:intergenic |
| TTGTCGAACCACTTATCGAC+CGG | 0.556695 | tig0032705:-14020 | None:intergenic |
| GATCTTCTCCCTCGTTTCGG+GGG | 0.560904 | tig0032705:+13048 | Msa1449780:CDS |
| GAATGGTACTTGTAAGTGGA+TGG | 0.561504 | tig0032705:+13463 | Msa1449780:CDS |
| GCAAGGAGTAGTGCTAAGAA+AGG | 0.562153 | tig0032705:+13666 | Msa1449780:CDS |
| CCAAGTTCATGACGCGAGGA+AGG | 0.563882 | tig0032705:-13098 | None:intergenic |
| TTATCAATGATCACAAGATA+CGG | 0.565478 | tig0032705:-12982 | None:intergenic |
| AAAGATACAAGATGGTGCTA+TGG | 0.566971 | tig0032705:+12791 | Msa1449780:CDS |
| CACTGCGTTTGAGCCTCGAA+CGG | 0.567140 | tig0032705:-12645 | None:intergenic |
| GTTCAAGCTGTGATCAGTCA+AGG | 0.567298 | tig0032705:+13762 | Msa1449780:CDS |
| CTTCGACCCGAGAGAGGGCA+TGG | 0.567829 | tig0032705:-12210 | None:intergenic |
| TGTCATTGCAGAGAAGGCTA+TGG | 0.569419 | tig0032705:+11949 | Msa1449780:CDS |
| CAATTGAGGAGAAGCTTGGA+AGG | 0.570671 | tig0032705:+13220 | Msa1449780:CDS |
| GGATCTTCTCCCTCGTTTCG+GGG | 0.572302 | tig0032705:+13047 | Msa1449780:CDS |
| AAATCATCGTCAACACCACC+AGG | 0.574336 | tig0032705:+11755 | Msa1449780:CDS |
| TATGGATAGGAGGGGAGAGT+AGG | 0.575704 | tig0032705:+12809 | Msa1449780:CDS |
| AAGATGGTGCTATGGATAGG+AGG | 0.577115 | tig0032705:+12799 | Msa1449780:CDS |
| ATGGAGGGTTGAAGCAGGAG+TGG | 0.578790 | tig0032705:+12176 | Msa1449780:CDS |
| GCGACTGTGCACGAATGCAT+TGG | 0.579329 | tig0032705:+13971 | Msa1449780:CDS |
| TGCCAAAGGTCCAAAGGTGG+AGG | 0.581637 | tig0032705:-11354 | None:intergenic |
| AAATTCTCGTTACGAGTGAA+AGG | 0.582272 | tig0032705:-12373 | None:intergenic |
| ATGAAAGATTGAATTGCAAG+AGG | 0.582620 | tig0032705:-13912 | None:intergenic |
| TAAGAGCCTAGCAACAAGAA+TGG | 0.586399 | tig0032705:+13446 | Msa1449780:CDS |
| TGTTCTCAGAGCATCAATCT+CGG | 0.587363 | tig0032705:-13199 | None:intergenic |
| TGGAAAGCGAAACTGATTGG+TGG | 0.587808 | tig0032705:+13007 | Msa1449780:CDS |
| ACTACTCTTGCCCCTACCAA+TGG | 0.588157 | tig0032705:-12512 | None:intergenic |
| AAGAAATGAAAGTAGTAGGG+AGG | 0.588494 | tig0032705:+12546 | Msa1449780:CDS |
| CATTGCTGCCAAAGGTCCAA+AGG | 0.589320 | tig0032705:-11360 | None:intergenic |
| TACAAGATGGTGCTATGGAT+AGG | 0.589655 | tig0032705:+12796 | Msa1449780:CDS |
| CCATTCTTCGACCCGAGAGA+GGG | 0.592544 | tig0032705:-12215 | None:intergenic |
| GGAAAGCGAAACTGATTGGT+GGG | 0.593200 | tig0032705:+13008 | Msa1449780:CDS |
| CTTGTTGGAGTTCTTACATG+AGG | 0.593869 | tig0032705:-11924 | None:intergenic |
| TTGCTAAAATCCTTAACCTG+TGG | 0.594864 | tig0032705:+13576 | Msa1449780:CDS |
| TCCATTCTTCGACCCGAGAG+AGG | 0.598096 | tig0032705:-12216 | None:intergenic |
| AGATGGTGCTATGGATAGGA+GGG | 0.600346 | tig0032705:+12800 | Msa1449780:CDS |
| TTCCACTAGCACAAGTTCAG+TGG | 0.605218 | tig0032705:+11535 | Msa1449780:CDS |
| CTGTCACATTGTTAGCAATG+AGG | 0.606008 | tig0032705:+12284 | Msa1449780:CDS |
| GTGGGATCACAAACTTGTGA+TGG | 0.606105 | tig0032705:+13026 | Msa1449780:CDS |
| ATTTCACCAAAGATACAAGA+TGG | 0.608975 | tig0032705:+12783 | Msa1449780:CDS |
| GAAGAAATTGATCTTGAACC+TGG | 0.609449 | tig0032705:-11773 | None:intergenic |
| AAGAAAAGTGTTCTTCCGGA+AGG | 0.610560 | tig0032705:-13373 | None:intergenic |
| AGGCATTTGACCATTGGTAG+GGG | 0.611585 | tig0032705:+12502 | Msa1449780:CDS |
| TGAATTCGGTCATAACCCAA+CGG | 0.611965 | tig0032705:+13836 | Msa1449780:CDS |
| ACTGTGTAGTCCTTTCCACT+TGG | 0.612402 | tig0032705:-13174 | None:intergenic |
| AACCACTGAACTTGTGCTAG+TGG | 0.612612 | tig0032705:-11537 | None:intergenic |
| TGCTGCCAAAGGTCCAAAGG+TGG | 0.618531 | tig0032705:-11357 | None:intergenic |
| GCTAGCTCTTGCCAAAGACA+AGG | 0.621668 | tig0032705:-14086 | None:intergenic |
| CATTACATACTCTCGATGCA+CGG | 0.622301 | tig0032705:+13932 | Msa1449780:CDS |
| TCTAATGTTACCAAGTGGAA+AGG | 0.624824 | tig0032705:+13164 | Msa1449780:CDS |
| AATAGCAATCATCATAGGGA+TGG | 0.625907 | tig0032705:-11691 | None:intergenic |
| AGCTAAGCTTATGCTAAGAG+GGG | 0.632426 | tig0032705:+14139 | Msa1449780:CDS |
| CATTTGGAAAATCTTACAAG+AGG | 0.633450 | tig0032705:-11848 | None:intergenic |
| AAAATGTACTATCTCTGATG+TGG | 0.634287 | tig0032705:+11568 | Msa1449780:CDS |
| GCTATTCTGGACAGAAAGAG+AGG | 0.635947 | tig0032705:+11708 | Msa1449780:CDS |
| ATGTCTCTAATGTTACCAAG+TGG | 0.638020 | tig0032705:+13159 | Msa1449780:CDS |
| AGGGATATAATTGAGAAAAG+GGG | 0.638282 | tig0032705:+12112 | Msa1449780:CDS |
| TGGAAGTTGGAAGCTCAGGA+TGG | 0.639529 | tig0032705:+12235 | Msa1449780:CDS |
| TTCAAGCTGTGATCAGTCAA+GGG | 0.645263 | tig0032705:+13763 | Msa1449780:CDS |
| AAATTCCACCAATGATGGCG+AGG | 0.646339 | tig0032705:-13254 | None:intergenic |
| ACTCGACCGTATATCTTCCT+CGG | 0.647338 | tig0032705:+11634 | Msa1449780:CDS |
| GATGGTGCTATGGATAGGAG+GGG | 0.647894 | tig0032705:+12801 | Msa1449780:CDS |
| AGCTCTAGTCTCAAGTACTG+TGG | 0.651245 | tig0032705:-14120 | None:intergenic |
| GGTTCCAAGTTCATGACGCG+AGG | 0.663662 | tig0032705:-13102 | None:intergenic |
| CAGTCGCAAGAGCTCGAGAG+CGG | 0.665433 | tig0032705:-13955 | None:intergenic |
| TGACCAAACATTAGTTACAC+CGG | 0.668297 | tig0032705:+14001 | Msa1449780:CDS |
| GATACCGTGAATTTCTAACT+CGG | 0.676357 | tig0032705:-11879 | None:intergenic |
| CGTTCGAGGCTCAAACGCAG+TGG | 0.676565 | tig0032705:+12646 | Msa1449780:CDS |
| GACCGTATATCTTCCTCGGT+AGG | 0.682935 | tig0032705:+11638 | Msa1449780:CDS |
| GTGTGGGGAAGTGAAACCAC+AGG | 0.689259 | tig0032705:-13592 | None:intergenic |
| GAAATTGATCTTGAACCTGG+TGG | 0.697443 | tig0032705:-11770 | None:intergenic |
| GCTACTAGAGATACCTACCG+AGG | 0.736879 | tig0032705:-11651 | None:intergenic |
| AAAGTGTTGAGTTTGCTCAG+CGG | 0.754231 | tig0032705:+12617 | Msa1449780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGGAAAGAGAAAATTA+AGG | + | tig0032705:12339-12358 | Msa1449780:CDS | 20.0% |
| !!! | TGTTTTCTGTTATTTGAATT+CGG | + | tig0032705:13822-13841 | Msa1449780:CDS | 20.0% |
| !! | ATGTTTTCATTGGATTACAT+GGG | + | tig0032705:11816-11835 | Msa1449780:CDS | 25.0% |
| ! | TAAGGGATATAATTGAGAAA+AGG | + | tig0032705:12110-12129 | Msa1449780:CDS | 25.0% |
| ! | AAGGGATATAATTGAGAAAA+GGG | + | tig0032705:12111-12130 | Msa1449780:CDS | 25.0% |
| ! | ATGAAAGAAATGAAAGTAGT+AGG | + | tig0032705:12542-12561 | Msa1449780:CDS | 25.0% |
| ! | TGAAAGAAATGAAAGTAGTA+GGG | + | tig0032705:12543-12562 | Msa1449780:CDS | 25.0% |
| ! | TTGGAGAAAACAAGTATAAA+AGG | + | tig0032705:12898-12917 | Msa1449780:CDS | 25.0% |
| ! | TTATCAATGATCACAAGATA+CGG | - | tig0032705:12985-13004 | None:intergenic | 25.0% |
| !!! | GATAAGTATGAAAGTTTTAG+CGG | - | tig0032705:13126-13145 | None:intergenic | 25.0% |
| ! | CTAAAACTTTCATACTTATC+TGG | + | tig0032705:13126-13145 | Msa1449780:CDS | 25.0% |
| ! | AAGATACCGAAAAAAGATAA+GGG | + | tig0032705:13534-13553 | Msa1449780:CDS | 25.0% |
| !!! | TGCTTCTAATTCAGATTTTT+TGG | - | tig0032705:13619-13638 | None:intergenic | 25.0% |
| ! | AATTGAACTCCTGATAAAAA+TGG | - | tig0032705:14201-14220 | None:intergenic | 25.0% |
| ! | GAGATAGTACATTTTTGTTC+TGG | - | tig0032705:11563-11582 | None:intergenic | 30.0% |
| AAAATGTACTATCTCTGATG+TGG | + | tig0032705:11568-11587 | Msa1449780:CDS | 30.0% | |
| ! | GATGTTTTCATTGGATTACA+TGG | + | tig0032705:11815-11834 | Msa1449780:CDS | 30.0% |
| CATTTGGAAAATCTTACAAG+AGG | - | tig0032705:11851-11870 | None:intergenic | 30.0% | |
| ! | CTCTTGTAAGATTTTCCAAA+TGG | + | tig0032705:11849-11868 | Msa1449780:CDS | 30.0% |
| TCCATTTGATTGTCTTGTAA+GGG | + | tig0032705:12093-12112 | Msa1449780:CDS | 30.0% | |
| AGGGATATAATTGAGAAAAG+GGG | + | tig0032705:12112-12131 | Msa1449780:CDS | 30.0% | |
| ! | TTTCCATTTTCTCAAATGCT+CGG | - | tig0032705:12329-12348 | None:intergenic | 30.0% |
| GAAAGAGAAAATTAAGGAAG+AGG | + | tig0032705:12345-12364 | Msa1449780:CDS | 30.0% | |
| ! | ACTCGTAACGAGAATTTTAT+CGG | + | tig0032705:12379-12398 | Msa1449780:CDS | 30.0% |
| ! | CAGTTGGAATTTATGCTTTT+TGG | + | tig0032705:12421-12440 | Msa1449780:CDS | 30.0% |
| GCAAGATTATATTGAACTCA+AGG | + | tig0032705:12465-12484 | Msa1449780:CDS | 30.0% | |
| AAGTATAGTAGGAAGAAAAG+AGG | + | tig0032705:12670-12689 | Msa1449780:CDS | 30.0% | |
| ATTTCACCAAAGATACAAGA+TGG | + | tig0032705:12783-12802 | Msa1449780:CDS | 30.0% | |
| ! | TCTTGTGATCATTGATAACT+TGG | + | tig0032705:12987-13006 | Msa1449780:CDS | 30.0% |
| TGATAAAATTCCACCAATGA+TGG | - | tig0032705:13262-13281 | None:intergenic | 30.0% | |
| CAAGATACCGAAAAAAGATA+AGG | + | tig0032705:13533-13552 | Msa1449780:CDS | 30.0% | |
| !!! | CAAGTTCCCTTATCTTTTTT+CGG | - | tig0032705:13543-13562 | None:intergenic | 30.0% |
| !!! | ATTCAGATTTTTTGGTGTGT+GGG | - | tig0032705:13611-13630 | None:intergenic | 30.0% |
| !!! | AATTCAGATTTTTTGGTGTG+TGG | - | tig0032705:13612-13631 | None:intergenic | 30.0% |
| GTTTGATGAGTTCATTGAAT+TGG | - | tig0032705:13698-13717 | None:intergenic | 30.0% | |
| AACTCATCAAACTATATGCT+AGG | + | tig0032705:13706-13725 | Msa1449780:CDS | 30.0% | |
| CTTGTATCTTGTGAAAAAAG+TGG | + | tig0032705:13884-13903 | Msa1449780:CDS | 30.0% | |
| ATGAAAGATTGAATTGCAAG+AGG | - | tig0032705:13915-13934 | None:intergenic | 30.0% | |
| !!! | TCAAGAAAGCCATTTTTATC+AGG | + | tig0032705:14189-14208 | Msa1449780:CDS | 30.0% |
| TTTATCAGGAGTTCAATTTG+TGG | + | tig0032705:14203-14222 | Msa1449780:CDS | 30.0% | |
| ! | ATTCTGTCATTTGAAGCTTC+AGG | - | tig0032705:11491-11510 | None:intergenic | 35.0% |
| AATAGCAATCATCATAGGGA+TGG | - | tig0032705:11694-11713 | None:intergenic | 35.0% | |
| CCAGAATAGCAATCATCATA+GGG | - | tig0032705:11698-11717 | None:intergenic | 35.0% | |
| TCCAGAATAGCAATCATCAT+AGG | - | tig0032705:11699-11718 | None:intergenic | 35.0% | |
| GAAGAAATTGATCTTGAACC+TGG | - | tig0032705:11776-11795 | None:intergenic | 35.0% | |
| ! | ACGAGTTGTGATGTTTTCAT+TGG | + | tig0032705:11806-11825 | Msa1449780:CDS | 35.0% |
| TTGGAAAATCTTACAAGAGG+AGG | - | tig0032705:11848-11867 | None:intergenic | 35.0% | |
| GATACCGTGAATTTCTAACT+CGG | - | tig0032705:11882-11901 | None:intergenic | 35.0% | |
| ! | TCAGTTGCTTTGTATCAGAT+AGG | + | tig0032705:11900-11919 | Msa1449780:CDS | 35.0% |
| ! | CAGTTGCTTTGTATCAGATA+GGG | + | tig0032705:11901-11920 | Msa1449780:CDS | 35.0% |
| CAAGAATCCATATACCATTG+AGG | + | tig0032705:12015-12034 | Msa1449780:CDS | 35.0% | |
| GAAAAATTTCAGCTCCTCAA+TGG | - | tig0032705:12032-12051 | None:intergenic | 35.0% | |
| TTTCTCCAGCAAGAAGAATT+TGG | + | tig0032705:12048-12067 | Msa1449780:CDS | 35.0% | |
| GACTCAGATCAAAGTATATC+GGG | - | tig0032705:12075-12094 | None:intergenic | 35.0% | |
| GGACTCAGATCAAAGTATAT+CGG | - | tig0032705:12076-12095 | None:intergenic | 35.0% | |
| GTCCATTTGATTGTCTTGTA+AGG | + | tig0032705:12092-12111 | Msa1449780:CDS | 35.0% | |
| TCCCTTACAAGACAATCAAA+TGG | - | tig0032705:12097-12116 | None:intergenic | 35.0% | |
| ACATTGTTAGCAATGAGGTT+AGG | + | tig0032705:12289-12308 | Msa1449780:CDS | 35.0% | |
| AAATTCTCGTTACGAGTGAA+AGG | - | tig0032705:12376-12395 | None:intergenic | 35.0% | |
| AAAGAAAGAGCTTTCTCAGT+TGG | + | tig0032705:12405-12424 | Msa1449780:CDS | 35.0% | |
| !!! | ATGCTTTTTGGTGATGTTAC+TGG | + | tig0032705:12433-12452 | Msa1449780:CDS | 35.0% |
| !! | AAAAGAAGGCATTTGACCAT+TGG | + | tig0032705:12496-12515 | Msa1449780:CDS | 35.0% |
| AAGAAATGAAAGTAGTAGGG+AGG | + | tig0032705:12546-12565 | Msa1449780:CDS | 35.0% | |
| !! | AAAGGTATTGCATGTGTATC+AGG | + | tig0032705:12712-12731 | Msa1449780:CDS | 35.0% |
| ATAGCACCATCTTGTATCTT+TGG | - | tig0032705:12792-12811 | None:intergenic | 35.0% | |
| ! | AAAGATACAAGATGGTGCTA+TGG | + | tig0032705:12791-12810 | Msa1449780:CDS | 35.0% |
| AGCAAAACTATCTAAACCTC+AGG | + | tig0032705:12839-12858 | Msa1449780:CDS | 35.0% | |
| ! | CAACTTCTAAAAATGACCTG+AGG | - | tig0032705:12858-12877 | None:intergenic | 35.0% |
| !! | TGTGAGTGTTGAGAATAGTT+TGG | + | tig0032705:12879-12898 | Msa1449780:CDS | 35.0% |
| ATGTCTCTAATGTTACCAAG+TGG | + | tig0032705:13159-13178 | Msa1449780:CDS | 35.0% | |
| TCTAATGTTACCAAGTGGAA+AGG | + | tig0032705:13164-13183 | Msa1449780:CDS | 35.0% | |
| AAGCTTGGAAGGTTAACTTT+AGG | + | tig0032705:13231-13250 | Msa1449780:CDS | 35.0% | |
| GACTCTTAGATACCATAAAC+AGG | + | tig0032705:13304-13323 | Msa1449780:CDS | 35.0% | |
| ACAAGAATGGTACTTGTAAG+TGG | + | tig0032705:13459-13478 | Msa1449780:CDS | 35.0% | |
| GCTAACAATGAAACTGGAAT+GGG | - | tig0032705:13501-13520 | None:intergenic | 35.0% | |
| TGCTAACAATGAAACTGGAA+TGG | - | tig0032705:13502-13521 | None:intergenic | 35.0% | |
| ! | AAGATAAGGGAACTTGTTTG+TGG | + | tig0032705:13547-13566 | Msa1449780:CDS | 35.0% |
| TTGCTAAAATCCTTAACCTG+TGG | + | tig0032705:13576-13595 | Msa1449780:CDS | 35.0% | |
| !!! | TTCAGATTTTTTGGTGTGTG+GGG | - | tig0032705:13610-13629 | None:intergenic | 35.0% |
| TGCTAAGTTTCAACATTGCA+AGG | + | tig0032705:13649-13668 | Msa1449780:CDS | 35.0% | |
| GCTAGGAAAAGAGAAGTTAT+TGG | + | tig0032705:13723-13742 | Msa1449780:CDS | 35.0% | |
| TATTGGATCTTCACATGCAA+TGG | + | tig0032705:13740-13759 | Msa1449780:CDS | 35.0% | |
| TCAACATCTGGATCATTTGT+GGG | + | tig0032705:13794-13813 | Msa1449780:CDS | 35.0% | |
| TGACCAAACATTAGTTACAC+CGG | + | tig0032705:14001-14020 | Msa1449780:CDS | 35.0% | |
| ! | CAACTGAGCATTAGTTTGAA+TGG | - | tig0032705:14063-14082 | None:intergenic | 35.0% |
| ! | AATTTGTGGTGATGATCATC+CGG | + | tig0032705:14217-14236 | Msa1449780:CDS | 35.0% |
| CTTAAACTCATTGCTGCCAA+AGG | - | tig0032705:11371-11390 | None:intergenic | 40.0% | |
| CTTTGGCAGCAATGAGTTTA+AGG | + | tig0032705:11369-11388 | Msa1449780:CDS | 40.0% | |
| GAATATGTCTTCGTCGTCTT+CGG | + | tig0032705:11391-11410 | Msa1449780:CDS | 40.0% | |
| AGAGAAAAACGGTGACTGAT+TGG | - | tig0032705:11429-11448 | None:intergenic | 40.0% | |
| GACGTTCTTGGAGAGAAAAA+CGG | - | tig0032705:11440-11459 | None:intergenic | 40.0% | |
| TACCTACCGAGGAAGATATA+CGG | - | tig0032705:11643-11662 | None:intergenic | 40.0% | |
| ATCTCTAGTAGCACCATATC+TGG | + | tig0032705:11662-11681 | Msa1449780:CDS | 40.0% | |
| ! | CCCTATGATGATTGCTATTC+TGG | + | tig0032705:11695-11714 | Msa1449780:CDS | 40.0% |
| AAAGAGAGGCGAAGTAAGAA+AGG | + | tig0032705:11722-11741 | Msa1449780:CDS | 40.0% | |
| !!! | GTGGTGTTGACGATGATTTT+TGG | - | tig0032705:11754-11773 | None:intergenic | 40.0% |
| GAAATTGATCTTGAACCTGG+TGG | - | tig0032705:11773-11792 | None:intergenic | 40.0% | |
| TGTGCCGAGTTAGAAATTCA+CGG | + | tig0032705:11875-11894 | Msa1449780:CDS | 40.0% | |
| CTTGTTGGAGTTCTTACATG+AGG | - | tig0032705:11927-11946 | None:intergenic | 40.0% | |
| TTCAGCTCCTCAATGGTATA+TGG | - | tig0032705:12025-12044 | None:intergenic | 40.0% | |
| AAAAACATGGAGGAGAACTC+TGG | + | tig0032705:12146-12165 | Msa1449780:CDS | 40.0% | |
| !!! | AACTCTGGCTTTTGTATGGA+GGG | + | tig0032705:12161-12180 | Msa1449780:CDS | 40.0% |
| CTGTCACATTGTTAGCAATG+AGG | + | tig0032705:12284-12303 | Msa1449780:CDS | 40.0% | |
| TCAAGGCAAGATCGAAAAGA+AGG | + | tig0032705:12482-12501 | Msa1449780:CDS | 40.0% | |
| ! | AAGGCATTTGACCATTGGTA+GGG | + | tig0032705:12501-12520 | Msa1449780:CDS | 40.0% |
| ! | AGGAGAAAGAACCAGTTTTG+TGG | + | tig0032705:12566-12585 | Msa1449780:CDS | 40.0% |
| !! | GAAAGAACCAGTTTTGTGGA+AGG | + | tig0032705:12570-12589 | Msa1449780:CDS | 40.0% |
| !! | AAAGTGTTGAGTTTGCTCAG+CGG | + | tig0032705:12617-12636 | Msa1449780:CDS | 40.0% |
| AACGCAGTGGTAAGTATAGT+AGG | + | tig0032705:12659-12678 | Msa1449780:CDS | 40.0% | |
| TAGGAAGAAAAGAGGAGTGA+AGG | + | tig0032705:12678-12697 | Msa1449780:CDS | 40.0% | |
| !! | AGAGGAGTGAAGGTTTTGTA+TGG | + | tig0032705:12688-12707 | Msa1449780:CDS | 40.0% |
| !! | GAGGAGTGAAGGTTTTGTAT+GGG | + | tig0032705:12689-12708 | Msa1449780:CDS | 40.0% |
| !! | GTGAAGGTTTTGTATGGGAA+AGG | + | tig0032705:12694-12713 | Msa1449780:CDS | 40.0% |
| GTATCAGGAGATTCAGGAAT+TGG | + | tig0032705:12727-12746 | Msa1449780:CDS | 40.0% | |
| !! | TACAAGATGGTGCTATGGAT+AGG | + | tig0032705:12796-12815 | Msa1449780:CDS | 40.0% |
| ACTTGGAAAGCGAAACTGAT+TGG | + | tig0032705:13004-13023 | Msa1449780:CDS | 40.0% | |
| ! | TGTTCTCAGAGCATCAATCT+CGG | - | tig0032705:13202-13221 | None:intergenic | 40.0% |
| !! | TGATGCTCTGAGAACAATTG+AGG | + | tig0032705:13206-13225 | Msa1449780:CDS | 40.0% |
| AGAACAATTGAGGAGAAGCT+TGG | + | tig0032705:13216-13235 | Msa1449780:CDS | 40.0% | |
| !! | AAGAGTCTGCTTGGTGTTAT+AGG | - | tig0032705:13291-13310 | None:intergenic | 40.0% |
| ATGGTATCTAAGAGTCTGCT+TGG | - | tig0032705:13300-13319 | None:intergenic | 40.0% | |
| CATGAAGACATCTCCTTCAA+GGG | - | tig0032705:13333-13352 | None:intergenic | 40.0% | |
| !! | AAGAAAAGTGTTCTTCCGGA+AGG | - | tig0032705:13376-13395 | None:intergenic | 40.0% |
| !! | GCAGAAGAAAAGTGTTCTTC+CGG | - | tig0032705:13380-13399 | None:intergenic | 40.0% |
| ! | GCTCTTCGATGTTTGTTTCT+CGG | + | tig0032705:13401-13420 | Msa1449780:CDS | 40.0% |
| TTCTTGTTGCTAGGCTCTTA+GGG | - | tig0032705:13446-13465 | None:intergenic | 40.0% | |
| ATTCTTGTTGCTAGGCTCTT+AGG | - | tig0032705:13447-13466 | None:intergenic | 40.0% | |
| TAAGAGCCTAGCAACAAGAA+TGG | + | tig0032705:13446-13465 | Msa1449780:CDS | 40.0% | |
| CAAGTACCATTCTTGTTGCT+AGG | - | tig0032705:13455-13474 | None:intergenic | 40.0% | |
| GAATGGTACTTGTAAGTGGA+TGG | + | tig0032705:13463-13482 | Msa1449780:CDS | 40.0% | |
| GCAAGTGCTAACAATGAAAC+TGG | - | tig0032705:13507-13526 | None:intergenic | 40.0% | |
| TTCAAGCTGTGATCAGTCAA+GGG | + | tig0032705:13763-13782 | Msa1449780:CDS | 40.0% | |
| AGGGTCAATATCTCAACATC+TGG | + | tig0032705:13782-13801 | Msa1449780:CDS | 40.0% | |
| CTCAACATCTGGATCATTTG+TGG | + | tig0032705:13793-13812 | Msa1449780:CDS | 40.0% | |
| TGAATTCGGTCATAACCCAA+CGG | + | tig0032705:13836-13855 | Msa1449780:CDS | 40.0% | |
| CATTACATACTCTCGATGCA+CGG | + | tig0032705:13932-13951 | Msa1449780:CDS | 40.0% | |
| CTCAGTTGAATCCTTGTCTT+TGG | + | tig0032705:14075-14094 | Msa1449780:CDS | 40.0% | |
| AGAGCTAAGCTTATGCTAAG+AGG | + | tig0032705:14137-14156 | Msa1449780:CDS | 40.0% | |
| GAGCTAAGCTTATGCTAAGA+GGG | + | tig0032705:14138-14157 | Msa1449780:CDS | 40.0% | |
| AGCTAAGCTTATGCTAAGAG+GGG | + | tig0032705:14139-14158 | Msa1449780:CDS | 40.0% | |
| ! | AGAGGGGCACAATTTGATAT+AGG | + | tig0032705:14155-14174 | Msa1449780:CDS | 40.0% |
| ! | GAGGGGCACAATTTGATATA+GGG | + | tig0032705:14156-14175 | Msa1449780:CDS | 40.0% |
| TCGCGAGCAAATATAGTATC+CGG | - | tig0032705:14239-14258 | None:intergenic | 40.0% | |
| GAAGAAAGTTCCTCCACCTT+TGG | + | tig0032705:11344-11363 | Msa1449780:CDS | 45.0% | |
| AAATGACACGACGACGTTCT+TGG | - | tig0032705:11452-11471 | None:intergenic | 45.0% | |
| TTCCACTAGCACAAGTTCAG+TGG | + | tig0032705:11535-11554 | Msa1449780:CDS | 45.0% | |
| AACCACTGAACTTGTGCTAG+TGG | - | tig0032705:11540-11559 | None:intergenic | 45.0% | |
| CTGCATATCACCTGAAGTAC+AGG | - | tig0032705:11612-11631 | None:intergenic | 45.0% | |
| ACTCGACCGTATATCTTCCT+CGG | + | tig0032705:11634-11653 | Msa1449780:CDS | 45.0% | |
| GCTATTCTGGACAGAAAGAG+AGG | + | tig0032705:11708-11727 | Msa1449780:CDS | 45.0% | |
| AAATCATCGTCAACACCACC+AGG | + | tig0032705:11755-11774 | Msa1449780:CDS | 45.0% | |
| TAACTCGGCACACAACCATT+TGG | - | tig0032705:11867-11886 | None:intergenic | 45.0% | |
| CTCTGCAATGACAAGCTTGT+TGG | - | tig0032705:11942-11961 | None:intergenic | 45.0% | |
| CAAGCTTGTCATTGCAGAGA+AGG | + | tig0032705:11943-11962 | Msa1449780:CDS | 45.0% | |
| TGTCATTGCAGAGAAGGCTA+TGG | + | tig0032705:11949-11968 | Msa1449780:CDS | 45.0% | |
| GCTATGGACGTTGCTTCTTT+CGG | + | tig0032705:11965-11984 | Msa1449780:CDS | 45.0% | |
| TTGAGAAAAGGGGTGAGTTG+TGG | + | tig0032705:12122-12141 | Msa1449780:CDS | 45.0% | |
| TGAGAAAAGGGGTGAGTTGT+GGG | + | tig0032705:12123-12142 | Msa1449780:CDS | 45.0% | |
| GGTGAGTTGTGGGAAAAACA+TGG | + | tig0032705:12133-12152 | Msa1449780:CDS | 45.0% | |
| GAGTTGTGGGAAAAACATGG+AGG | + | tig0032705:12136-12155 | Msa1449780:CDS | 45.0% | |
| !!! | GGAGAACTCTGGCTTTTGTA+TGG | + | tig0032705:12157-12176 | Msa1449780:CDS | 45.0% |
| !!! | GAACTCTGGCTTTTGTATGG+AGG | + | tig0032705:12160-12179 | Msa1449780:CDS | 45.0% |
| TTTGTATGGAGGGTTGAAGC+AGG | + | tig0032705:12171-12190 | Msa1449780:CDS | 45.0% | |
| AGAATGGAAGTTGGAAGCTC+AGG | + | tig0032705:12231-12250 | Msa1449780:CDS | 45.0% | |
| TCGCCGAGCATTTGAGAAAA+TGG | + | tig0032705:12323-12342 | Msa1449780:CDS | 45.0% | |
| !! | GAAGGCATTTGACCATTGGT+AGG | + | tig0032705:12500-12519 | Msa1449780:CDS | 45.0% |
| AGGCATTTGACCATTGGTAG+GGG | + | tig0032705:12502-12521 | Msa1449780:CDS | 45.0% | |
| TCTGACTCCTTCCACAAAAC+TGG | - | tig0032705:12580-12599 | None:intergenic | 45.0% | |
| GCATGTGTATCAGGAGATTC+AGG | + | tig0032705:12721-12740 | Msa1449780:CDS | 45.0% | |
| !! | AAGATGGTGCTATGGATAGG+AGG | + | tig0032705:12799-12818 | Msa1449780:CDS | 45.0% |
| !! | AGATGGTGCTATGGATAGGA+GGG | + | tig0032705:12800-12819 | Msa1449780:CDS | 45.0% |
| TGGAAAGCGAAACTGATTGG+TGG | + | tig0032705:13007-13026 | Msa1449780:CDS | 45.0% | |
| GGAAAGCGAAACTGATTGGT+GGG | + | tig0032705:13008-13027 | Msa1449780:CDS | 45.0% | |
| GTGGGATCACAAACTTGTGA+TGG | + | tig0032705:13026-13045 | Msa1449780:CDS | 45.0% | |
| ATGGATCTTCTCCCTCGTTT+CGG | + | tig0032705:13045-13064 | Msa1449780:CDS | 45.0% | |
| ACTGTGTAGTCCTTTCCACT+TGG | - | tig0032705:13177-13196 | None:intergenic | 45.0% | |
| CAATTGAGGAGAAGCTTGGA+AGG | + | tig0032705:13220-13239 | Msa1449780:CDS | 45.0% | |
| ! | AAATTCCACCAATGATGGCG+AGG | - | tig0032705:13257-13276 | None:intergenic | 45.0% |
| !! | CTTCAAGGGCATCCTGTTTA+TGG | - | tig0032705:13319-13338 | None:intergenic | 45.0% |
| CATAAACAGGATGCCCTTGA+AGG | + | tig0032705:13317-13336 | Msa1449780:CDS | 45.0% | |
| CCATGAAGACATCTCCTTCA+AGG | - | tig0032705:13334-13353 | None:intergenic | 45.0% | |
| CCTTGAAGGAGATGTCTTCA+TGG | + | tig0032705:13331-13350 | Msa1449780:CDS | 45.0% | |
| TCGGTATTTGATCACGCAGA+CGG | + | tig0032705:13420-13439 | Msa1449780:CDS | 45.0% | |
| CAATGAAACTGGAATGGGAC+TGG | - | tig0032705:13496-13515 | None:intergenic | 45.0% | |
| GGAAGTGAAACCACAGGTTA+AGG | - | tig0032705:13589-13608 | None:intergenic | 45.0% | |
| GCAAGGAGTAGTGCTAAGAA+AGG | + | tig0032705:13666-13685 | Msa1449780:CDS | 45.0% | |
| GTTCAAGCTGTGATCAGTCA+AGG | + | tig0032705:13762-13781 | Msa1449780:CDS | 45.0% | |
| CGACCGGTGTAACTAATGTT+TGG | - | tig0032705:14007-14026 | None:intergenic | 45.0% | |
| TAGTTACACCGGTCGATAAG+TGG | + | tig0032705:14012-14031 | Msa1449780:CDS | 45.0% | |
| TTGTCGAACCACTTATCGAC+CGG | - | tig0032705:14023-14042 | None:intergenic | 45.0% | |
| GGTTCGACAAATCACTCTGT+TGG | + | tig0032705:14033-14052 | Msa1449780:CDS | 45.0% | |
| ! | AGCTCTAGTCTCAAGTACTG+TGG | - | tig0032705:14123-14142 | None:intergenic | 45.0% |
| TTCCTCCACCTTTGGACCTT+TGG | + | tig0032705:11352-11371 | Msa1449780:CDS | 50.0% | |
| CATTGCTGCCAAAGGTCCAA+AGG | - | tig0032705:11363-11382 | None:intergenic | 50.0% | |
| GACCGTATATCTTCCTCGGT+AGG | + | tig0032705:11638-11657 | Msa1449780:CDS | 50.0% | |
| GCTACTAGAGATACCTACCG+AGG | - | tig0032705:11654-11673 | None:intergenic | 50.0% | |
| GGGATGGCAGTAACCAGATA+TGG | - | tig0032705:11678-11697 | None:intergenic | 50.0% | |
| CGGGACCAAATTCTTCTTGC+TGG | - | tig0032705:12056-12075 | None:intergenic | 50.0% | |
| TCGGGTCGAAGAATGGAAGT+TGG | + | tig0032705:12222-12241 | Msa1449780:CDS | 50.0% | |
| TGGAAGTTGGAAGCTCAGGA+TGG | + | tig0032705:12235-12254 | Msa1449780:CDS | 50.0% | |
| TGGAAGCTCAGGATGGAAAC+TGG | + | tig0032705:12242-12261 | Msa1449780:CDS | 50.0% | |
| AATGCTCGGCGACACTTCTT+CGG | - | tig0032705:12315-12334 | None:intergenic | 50.0% | |
| ACTACTCTTGCCCCTACCAA+TGG | - | tig0032705:12515-12534 | None:intergenic | 50.0% | |
| !! | GATGGTGCTATGGATAGGAG+GGG | + | tig0032705:12801-12820 | Msa1449780:CDS | 50.0% |
| TATGGATAGGAGGGGAGAGT+AGG | + | tig0032705:12809-12828 | Msa1449780:CDS | 50.0% | |
| TGGATCTTCTCCCTCGTTTC+GGG | + | tig0032705:13046-13065 | Msa1449780:CDS | 50.0% | |
| ACTTTAGGCCTCGCCATCAT+TGG | + | tig0032705:13246-13265 | Msa1449780:CDS | 50.0% | |
| GTAAAGAAGCTCACGCCTTC+CGG | + | tig0032705:13358-13377 | Msa1449780:CDS | 50.0% | |
| ! | GCTAGCTCTTGCCAAAGACA+AGG | - | tig0032705:14089-14108 | None:intergenic | 50.0% |
| TGCCAAAGGTCCAAAGGTGG+AGG | - | tig0032705:11357-11376 | None:intergenic | 55.0% | |
| TGCTGCCAAAGGTCCAAAGG+TGG | - | tig0032705:11360-11379 | None:intergenic | 55.0% | |
| TCTCCAGCTGCCTGTACTTC+AGG | + | tig0032705:11599-11618 | Msa1449780:CDS | 55.0% | |
| TCACCTGAAGTACAGGCAGC+TGG | - | tig0032705:11605-11624 | None:intergenic | 55.0% | |
| ATGGAGGGTTGAAGCAGGAG+TGG | + | tig0032705:12176-12195 | Msa1449780:CDS | 55.0% | |
| ATGCTGTCCATGCCCTCTCT+CGG | + | tig0032705:12203-12222 | Msa1449780:CDS | 55.0% | |
| CCATTCTTCGACCCGAGAGA+GGG | - | tig0032705:12218-12237 | None:intergenic | 55.0% | |
| TCCATTCTTCGACCCGAGAG+AGG | - | tig0032705:12219-12238 | None:intergenic | 55.0% | |
| CACTGCGTTTGAGCCTCGAA+CGG | - | tig0032705:12648-12667 | None:intergenic | 55.0% | |
| GGATCTTCTCCCTCGTTTCG+GGG | + | tig0032705:13047-13066 | Msa1449780:CDS | 55.0% | |
| GATCTTCTCCCTCGTTTCGG+GGG | + | tig0032705:13048-13067 | Msa1449780:CDS | 55.0% | |
| CCAAGTTCATGACGCGAGGA+AGG | - | tig0032705:13101-13120 | None:intergenic | 55.0% | |
| CCTTCCTCGCGTCATGAACT+TGG | + | tig0032705:13098-13117 | Msa1449780:CDS | 55.0% | |
| GGTTCCAAGTTCATGACGCG+AGG | - | tig0032705:13105-13124 | None:intergenic | 55.0% | |
| TTAGGCCTCGCCATCATTGG+TGG | + | tig0032705:13249-13268 | Msa1449780:CDS | 55.0% | |
| GTGTGGGGAAGTGAAACCAC+AGG | - | tig0032705:13595-13614 | None:intergenic | 55.0% | |
| GCGACTGTGCACGAATGCAT+TGG | + | tig0032705:13971-13990 | Msa1449780:CDS | 55.0% | |
| TGCTGTCCATGCCCTCTCTC+GGG | + | tig0032705:12204-12223 | Msa1449780:CDS | 60.0% | |
| CCCTCTCTCGGGTCGAAGAA+TGG | + | tig0032705:12215-12234 | Msa1449780:CDS | 60.0% | |
| CGTTCGAGGCTCAAACGCAG+TGG | + | tig0032705:12646-12665 | Msa1449780:CDS | 60.0% | |
| GAGTCTCTCCCCCGAAACGA+GGG | - | tig0032705:13059-13078 | None:intergenic | 60.0% | |
| TGAGTCTCTCCCCCGAAACG+AGG | - | tig0032705:13060-13079 | None:intergenic | 60.0% | |
| CCTCGAGCTCGACAACCGTT+GGG | - | tig0032705:13854-13873 | None:intergenic | 60.0% | |
| ACCTCGAGCTCGACAACCGT+TGG | - | tig0032705:13855-13874 | None:intergenic | 60.0% | |
| CAGTCGCAAGAGCTCGAGAG+CGG | - | tig0032705:13958-13977 | None:intergenic | 60.0% | |
| CTTCGACCCGAGAGAGGGCA+TGG | - | tig0032705:12213-12232 | None:intergenic | 65.0% | |
| CTCAGCGGCACTACCGTTCG+AGG | + | tig0032705:12632-12651 | Msa1449780:CDS | 65.0% | |
| CCCAACGGTTGTCGAGCTCG+AGG | + | tig0032705:13851-13870 | Msa1449780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032705 | gene | 11332 | 14310 | 11332 | ID=Msa1449780;Name=Msa1449780 |
| tig0032705 | mRNA | 11332 | 14310 | 11332 | ID=Msa1449780-mRNA-1;Parent=Msa1449780;Name=Msa1449780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|992 |
| tig0032705 | exon | 11332 | 14310 | 11332 | ID=Msa1449780-mRNA-1:exon:17130;Parent=Msa1449780-mRNA-1 |
| tig0032705 | CDS | 11332 | 14310 | 11332 | ID=Msa1449780-mRNA-1:cds;Parent=Msa1449780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
