AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCACGATGGAACGTTTC+TGG 0.171901 tig0045486:-1154 Msa1465760:three_prime_UTR
CTGTTTATTTCCTTCTATAA+GGG 0.277716 tig0045486:-2370 Msa1465760:three_prime_UTR
GACTTCCTTATGTCGTTTAA+TGG 0.278873 tig0045486:-883 Msa1465760:three_prime_UTR
TTTCTCTGGAGGATCCTTAA+TGG 0.279006 tig0045486:-1512 Msa1465760:three_prime_UTR
ACAGATTCTGTATCGAGTTT+AGG 0.294590 tig0045486:-1180 Msa1465760:three_prime_UTR
ACGATGCAACCTTGAGAATA+TGG 0.299157 tig0045486:-705 Msa1465760:three_prime_UTR
TTGGTTAGTAATAATAAATC+TGG 0.306326 tig0045486:-2720 Msa1465760:CDS
TTGATGGAACTGTTAAAATC+TGG 0.307851 tig0045486:-1119 Msa1465760:three_prime_UTR
ACTGTTTATTTCCTTCTATA+AGG 0.311282 tig0045486:-2371 Msa1465760:three_prime_UTR
AAATTAAATTCAGCTTGATT+TGG 0.328022 tig0045486:-2739 None:intergenic
GAATGGGCTTCCCAGCTTAA+TGG 0.341217 tig0045486:-1488 Msa1465760:intron
GGGAAGCCCATTCTCCATTA+AGG 0.345840 tig0045486:+1498 Msa1465760:intergenic
TCATCATCACTATGATGATT+TGG 0.347935 tig0045486:+2218 Msa1465760:intergenic
GGAGAGCCGCCAGGAGGATC+AGG 0.348540 tig0045486:+2065 Msa1465760:intergenic
GATGGTGATGGTGGTGGTGA+TGG 0.350066 tig0045486:-1914 Msa1465760:three_prime_UTR
ATTATCTTGCCCCTTATAGA+AGG 0.354025 tig0045486:+2360 Msa1465760:intergenic
GGTGGTGATGGTGGTGGTGG+TGG 0.357191 tig0045486:-1902 Msa1465760:three_prime_UTR
AGAGGAAATGTCCTCATTGC+TGG 0.358059 tig0045486:-949 Msa1465760:three_prime_UTR
CCGCCGTCGTCTCCATTATC+AGG 0.362459 tig0045486:-2594 Msa1465760:intron
TCTGTGAATTAAGTGGAATT+TGG 0.367696 tig0045486:+2467 Msa1465760:intergenic
GGTGGTGGTGATGGTGGTGG+TGG 0.368236 tig0045486:-1905 Msa1465760:three_prime_UTR
AATCTGAAAGGCACGTTAGA+TGG 0.390124 tig0045486:-1084 Msa1465760:three_prime_UTR
GTTAAAATCTGGGATGCGTC+TGG 0.391279 tig0045486:-1108 Msa1465760:three_prime_UTR
TGCCTCATCTGTTGGGCTGC+AGG 0.397890 tig0045486:+1568 Msa1465760:intergenic
TGTTCAATCCACTGAATGAA+TGG 0.399093 tig0045486:+2622 Msa1465760:intergenic
GGAGGATCAGGGCCACCATC+TGG 0.408902 tig0045486:+2077 Msa1465760:intergenic
GATGGTGGTGGTGATGGTGG+TGG 0.409890 tig0045486:-1908 Msa1465760:three_prime_UTR
GCCACAAGTGCCTCATCTGT+TGG 0.411659 tig0045486:+1560 Msa1465760:intergenic
GAAGGAAATAAACAGTAAAC+TGG 0.413205 tig0045486:+2378 Msa1465760:intergenic
AACAATATATACCATTAAGC+TGG 0.414279 tig0045486:+1477 Msa1465760:intergenic
GATGAGGCACTTGTGGCAAC+AGG 0.424253 tig0045486:-1554 Msa1465760:three_prime_UTR
GGTGATGGTGGTGGTGATGG+TGG 0.426374 tig0045486:-1911 Msa1465760:three_prime_UTR
CCACAAGTGCCTCATCTGTT+GGG 0.429128 tig0045486:+1561 Msa1465760:intergenic
TGGTTCAGCTTTGTAGAAGT+TGG 0.432550 tig0045486:+2398 Msa1465760:intergenic
CCTGGCGGCTCTCCCGATCC+AGG 0.435267 tig0045486:-2056 Msa1465760:intron
GAAGAGAACGCACCTGATAA+TGG 0.440351 tig0045486:+2582 Msa1465760:intergenic
GATGGTGATGGTGATGGTGG+TGG 0.443920 tig0045486:-1920 Msa1465760:three_prime_UTR
GGAGGATCCTTAATGGAGAA+TGG 0.450325 tig0045486:-1505 Msa1465760:three_prime_UTR
GATGGTGATGGTGATGGTGA+TGG 0.452355 tig0045486:-1926 Msa1465760:three_prime_UTR
GGATTGTCGTCAGGTGCATC+AGG 0.456455 tig0045486:+2098 Msa1465760:intergenic
CTATGTAGGCCACCTGGATC+GGG 0.461969 tig0045486:+2044 Msa1465760:intergenic
TTGTATTGCTTAAAGTATCA+AGG 0.475310 tig0045486:+2249 Msa1465760:intergenic
GATGGTGGCCCTGATCCTCC+TGG 0.475492 tig0045486:-2074 Msa1465760:three_prime_UTR
CCACCATCTGGATTGTCGTC+AGG 0.479833 tig0045486:+2089 Msa1465760:intergenic
GGTGATGGTGATGGTGATGG+TGG 0.481615 tig0045486:-1923 Msa1465760:three_prime_UTR
GAGGATCCTTAATGGAGAAT+GGG 0.481827 tig0045486:-1504 Msa1465760:three_prime_UTR
CATCGTCAGAGGGAACTTCA+TGG 0.482786 tig0045486:+2129 Msa1465760:intergenic
TGATGGAACTGTTAAAATCT+GGG 0.483493 tig0045486:-1118 Msa1465760:three_prime_UTR
CGTGACCATTAAACGACATA+AGG 0.485564 tig0045486:+878 Msa1465760:intergenic
GGTGGTGGTGGTAATGGTGG+TGG 0.491312 tig0045486:-1890 Msa1465760:three_prime_UTR
CCTGGATCGGGAGAGCCGCC+AGG 0.491870 tig0045486:+2056 Msa1465760:intergenic
GATGGAACGTTTCTGGCATC+AGG 0.495719 tig0045486:-1147 Msa1465760:three_prime_UTR
AGGAAGAAGTTCATCGTCAG+AGG 0.495964 tig0045486:+2118 Msa1465760:intergenic
CGGAGGTTAATATTTGCCAT+TGG 0.497479 tig0045486:+2672 Msa1465760:intergenic
GATTCTGTGCATACATTCAC+TGG 0.498391 tig0045486:-1857 Msa1465760:three_prime_UTR
ACTATGTAGGCCACCTGGAT+CGG 0.499980 tig0045486:+2043 Msa1465760:intergenic
AAGAGTGTCTGTGAATTAAG+TGG 0.502002 tig0045486:+2460 Msa1465760:intergenic
CTGAAAATCCATTCATTCAG+TGG 0.503142 tig0045486:-2630 Msa1465760:CDS
GTGATGACGTAGGATTTCTC+TGG 0.509352 tig0045486:-1526 Msa1465760:three_prime_UTR
CCCAACAGATGAGGCACTTG+TGG 0.512260 tig0045486:-1561 Msa1465760:three_prime_UTR
AATCCTCCTCAGTGTGGATG+TGG 0.512568 tig0045486:-918 Msa1465760:three_prime_UTR
GATGGTGATGGTGATGGTGA+TGG 0.515485 tig0045486:-1932 Msa1465760:three_prime_UTR
GATGGTGATGGTGATGGTGA+TGG 0.515485 tig0045486:-1938 Msa1465760:three_prime_UTR
GATGGTGATGGTGATGGTGA+TGG 0.515485 tig0045486:-1944 Msa1465760:three_prime_UTR
GTTAAATCTTACAGTGGCTC+AGG 0.519678 tig0045486:-981 Msa1465760:intron
TCCCGTTTAAAATAAACAAA+CGG 0.526782 tig0045486:+2696 Msa1465760:intergenic
GCAATGAGGACATTTCCTCT+TGG 0.527044 tig0045486:+952 Msa1465760:intergenic
TGTTTATTTCCTTCTATAAG+GGG 0.535426 tig0045486:-2369 Msa1465760:three_prime_UTR
CAGCTTTGTAGAAGTTGGAA+AGG 0.541395 tig0045486:+2403 Msa1465760:intergenic
TTAAATATCGCAGATGGTGA+TGG 0.545678 tig0045486:-1962 Msa1465760:intron
GCACTTGTGGCAACAGGAGC+TGG 0.547872 tig0045486:-1548 Msa1465760:three_prime_UTR
ACAATATATACCATTAAGCT+GGG 0.549455 tig0045486:+1478 Msa1465760:intergenic
GGCACGTTAGATGGTCCTGA+AGG 0.554207 tig0045486:-1075 Msa1465760:three_prime_UTR
AGGAGAAGAATATGAAGCAG+TGG 0.555430 tig0045486:+2423 Msa1465760:intergenic
TTAGGGAGAACAATATGTAC+TGG 0.559850 tig0045486:-733 Msa1465760:intron
GGAGAAGAATATGAAGCAGT+GGG 0.563614 tig0045486:+2424 Msa1465760:intergenic
GATAATGGAGACGACGGCGG+CGG 0.569140 tig0045486:+2597 Msa1465760:intergenic
GAGAGCCGCCAGGAGGATCA+GGG 0.578266 tig0045486:+2066 Msa1465760:intergenic
GCACGTTAGATGGTCCTGAA+GGG 0.585298 tig0045486:-1074 Msa1465760:three_prime_UTR
CACGTTAGATGGTCCTGAAG+GGG 0.591663 tig0045486:-1073 Msa1465760:three_prime_UTR
CATACATTCACTGGTCATGA+TGG 0.599726 tig0045486:-1848 Msa1465760:intron
GATGGTGATGGTGATGGTGA+TGG 0.603742 tig0045486:-1950 Msa1465760:three_prime_UTR
AAATCTTACAGTGGCTCAGG+TGG 0.615875 tig0045486:-978 Msa1465760:intron
TGCCTGCAGCCCAACAGATG+AGG 0.618221 tig0045486:-1570 Msa1465760:three_prime_UTR
ATCGGGAGTAAAATCACCAC+AGG 0.624969 tig0045486:+843 Msa1465760:intergenic
AGTTTAGGATTTAGCCACGA+TGG 0.627308 tig0045486:-1165 Msa1465760:three_prime_UTR
GATGCGTCTGGAAATCTGAA+AGG 0.634031 tig0045486:-1096 Msa1465760:three_prime_UTR
ATCGCAGATGGTGATGGTGA+TGG 0.637108 tig0045486:-1956 Msa1465760:intron
GGAAGAAGTTCATCGTCAGA+GGG 0.639941 tig0045486:+2119 Msa1465760:intergenic
ATGTCGTTTAATGGTCACGC+TGG 0.641738 tig0045486:-874 Msa1465760:three_prime_UTR
ATGACGTAGGATTTCTCTGG+AGG 0.647613 tig0045486:-1523 Msa1465760:three_prime_UTR
ACGTTAGATGGTCCTGAAGG+GGG 0.655427 tig0045486:-1072 Msa1465760:three_prime_UTR
CCTGACGACAATCCAGATGG+TGG 0.660117 tig0045486:-2089 Msa1465760:three_prime_UTR
TTGATGAATCCTCCTCAGTG+TGG 0.662951 tig0045486:-924 Msa1465760:three_prime_UTR
ATTCATCAAAACCAGCAATG+AGG 0.666974 tig0045486:+938 Msa1465760:intergenic
GAAAGCATTCATGTTGTGCG+AGG 0.671673 tig0045486:-667 Msa1465760:three_prime_UTR
ATTCCACATCCACACTGAGG+AGG 0.672492 tig0045486:+915 Msa1465760:intergenic
GCACCTGATAATGGAGACGA+CGG 0.677163 tig0045486:+2591 Msa1465760:intergenic
CCTGATAATGGAGACGACGG+CGG 0.680339 tig0045486:+2594 Msa1465760:intergenic
ACAGGAGCTGGTGATGACGT+AGG 0.681696 tig0045486:-1536 Msa1465760:three_prime_UTR
GGATCGGGAGAGCCGCCAGG+AGG 0.683258 tig0045486:+2059 Msa1465760:intergenic
GCACCTGACGACAATCCAGA+TGG 0.695484 tig0045486:-2092 Msa1465760:three_prime_UTR
TGGCTCAGGTGGCATCCAAG+AGG 0.696728 tig0045486:-967 Msa1465760:three_prime_UTR
CACGCTGGTAGTGTGACCTG+TGG 0.697317 tig0045486:-859 Msa1465760:three_prime_UTR
GGTTGGCGTCTAAAATAACA+CGG 0.705161 tig0045486:+2652 Msa1465760:intergenic
ATGCCAGAAACGTTCCATCG+TGG 0.721913 tig0045486:+1151 Msa1465760:intergenic
GCTATTCCACATCCACACTG+AGG 0.751183 tig0045486:+912 Msa1465760:intergenic
GGTGGCCCTGATCCTCCTGG+CGG 0.759172 tig0045486:-2071 Msa1465760:three_prime_UTR
TGGCGTCTAAAATAACACGG+AGG 0.847487 tig0045486:+2655 Msa1465750:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTGTTTTCTTATGAA+AGG - tig0045486:1896-1915 Msa1465760:three_prime_UTR 15.0%
!!! ATATATTGTTTTCTTATGAA+AGG - tig0045486:1896-1915 Msa1465760:three_prime_UTR 15.0%
!! TTGGTTAGTAATAATAAATC+TGG - tig0045486:640-659 Msa1465760:three_prime_UTR 20.0%
!! AAACGAGAAAATTGATTAAA+AGG + tig0045486:833-852 Msa1465760:intergenic 20.0%
!!! CTTTGTTTGTCTTATTTTAT+AGG - tig0045486:1067-1086 Msa1465760:three_prime_UTR 20.0%
!!! ATTATTTTAAATATCGCAGA+TGG - tig0045486:1392-1411 Msa1465760:intron 20.0%
!!! GATATTTTTTAATGCTTTCT+TGG - tig0045486:1739-1758 Msa1465760:intron 20.0%
!! TATCTAGTATAATATAAGTG+TGG - tig0045486:2074-2093 Msa1465760:three_prime_UTR 20.0%
!! TTGGTTAGTAATAATAAATC+TGG - tig0045486:640-659 Msa1465760:three_prime_UTR 20.0%
!! AAACGAGAAAATTGATTAAA+AGG + tig0045486:833-852 Msa1465760:intergenic 20.0%
!!! CTTTGTTTGTCTTATTTTAT+AGG - tig0045486:1067-1086 Msa1465760:three_prime_UTR 20.0%
!!! ATTATTTTAAATATCGCAGA+TGG - tig0045486:1392-1411 Msa1465760:intron 20.0%
!!! GATATTTTTTAATGCTTTCT+TGG - tig0045486:1739-1758 Msa1465760:intron 20.0%
!! TATCTAGTATAATATAAGTG+TGG - tig0045486:2074-2093 Msa1465760:three_prime_UTR 20.0%
!!! GACCGTTTGTTTATTTTAAA+CGG - tig0045486:662-681 Msa1465760:three_prime_UTR 25.0%
!!! ACCGTTTGTTTATTTTAAAC+GGG - tig0045486:663-682 Msa1465760:three_prime_UTR 25.0%
!! TCCCGTTTAAAATAAACAAA+CGG + tig0045486:667-686 Msa1465760:intergenic 25.0%
! ACTGTTTATTTCCTTCTATA+AGG - tig0045486:989-1008 Msa1465760:intron 25.0%
! CTGTTTATTTCCTTCTATAA+GGG - tig0045486:990-1009 Msa1465760:intron 25.0%
! TGTTTATTTCCTTCTATAAG+GGG - tig0045486:991-1010 Msa1465760:intron 25.0%
!! TTGTATTGCTTAAAGTATCA+AGG + tig0045486:1114-1133 Msa1465760:intergenic 25.0%
! AATCATCAATGTTACTATGT+AGG + tig0045486:1333-1352 Msa1465760:intergenic 25.0%
! ACATAAACAAATAGAGTAGA+AGG + tig0045486:1542-1561 Msa1465760:intergenic 25.0%
! ACAATATATACCATTAAGCT+GGG + tig0045486:1885-1904 Msa1465760:intergenic 25.0%
! AACAATATATACCATTAAGC+TGG + tig0045486:1886-1905 Msa1465760:intergenic 25.0%
! TTATGAAAGGCAAATATTAG+TGG - tig0045486:1909-1928 Msa1465760:three_prime_UTR 25.0%
!!! ATATTAGTGGTTAGTTTGTT+AGG - tig0045486:1922-1941 Msa1465760:three_prime_UTR 25.0%
!!! TATTAGTGGTTAGTTTGTTA+GGG - tig0045486:1923-1942 Msa1465760:three_prime_UTR 25.0%
!!! GACCGTTTGTTTATTTTAAA+CGG - tig0045486:662-681 Msa1465760:three_prime_UTR 25.0%
!!! ACCGTTTGTTTATTTTAAAC+GGG - tig0045486:663-682 Msa1465760:three_prime_UTR 25.0%
!! TCCCGTTTAAAATAAACAAA+CGG + tig0045486:667-686 Msa1465760:intergenic 25.0%
! ACTGTTTATTTCCTTCTATA+AGG - tig0045486:989-1008 Msa1465760:intron 25.0%
! CTGTTTATTTCCTTCTATAA+GGG - tig0045486:990-1009 Msa1465760:intron 25.0%
! TGTTTATTTCCTTCTATAAG+GGG - tig0045486:991-1010 Msa1465760:intron 25.0%
!! TTGTATTGCTTAAAGTATCA+AGG + tig0045486:1114-1133 Msa1465760:intergenic 25.0%
! AATCATCAATGTTACTATGT+AGG + tig0045486:1333-1352 Msa1465760:intergenic 25.0%
! ACATAAACAAATAGAGTAGA+AGG + tig0045486:1542-1561 Msa1465760:intergenic 25.0%
! ACAATATATACCATTAAGCT+GGG + tig0045486:1885-1904 Msa1465760:intergenic 25.0%
! AACAATATATACCATTAAGC+TGG + tig0045486:1886-1905 Msa1465760:intergenic 25.0%
! TTATGAAAGGCAAATATTAG+TGG - tig0045486:1909-1928 Msa1465760:three_prime_UTR 25.0%
!!! ATATTAGTGGTTAGTTTGTT+AGG - tig0045486:1922-1941 Msa1465760:three_prime_UTR 25.0%
!!! TATTAGTGGTTAGTTTGTTA+GGG - tig0045486:1923-1942 Msa1465760:three_prime_UTR 25.0%
!!! TTATTTTAAACGGGATCCAA+TGG - tig0045486:672-691 Msa1465760:three_prime_UTR 30.0%
TCTGTGAATTAAGTGGAATT+TGG + tig0045486:896-915 Msa1465760:intergenic 30.0%
GAAGGAAATAAACAGTAAAC+TGG + tig0045486:985-1004 Msa1465760:intergenic 30.0%
TCATCATCACTATGATGATT+TGG + tig0045486:1145-1164 Msa1465760:intergenic 30.0%
ACAATAACTGTTATCACATG+GGG + tig0045486:1648-1667 Msa1465760:intergenic 30.0%
CACAATAACTGTTATCACAT+GGG + tig0045486:1649-1668 Msa1465760:intergenic 30.0%
ACACAATAACTGTTATCACA+TGG + tig0045486:1650-1669 Msa1465760:intergenic 30.0%
TGTGATAACAGTTATTGTGT+TGG - tig0045486:1650-1669 Msa1465760:intron 30.0%
GTGATAACAGTTATTGTGTT+GGG - tig0045486:1651-1670 Msa1465760:intron 30.0%
ACACAAATCATATATGTGCA+AGG - tig0045486:1699-1718 Msa1465760:intron 30.0%
AATACATAGCTATTGATGTG+TGG - tig0045486:2043-2062 Msa1465760:intron 30.0%
GTATAATATAAGTGTGGCAT+TGG - tig0045486:2080-2099 Msa1465760:three_prime_UTR 30.0%
TTGATGGAACTGTTAAAATC+TGG - tig0045486:2241-2260 Msa1465760:three_prime_UTR 30.0%
TGATGGAACTGTTAAAATCT+GGG - tig0045486:2242-2261 Msa1465760:three_prime_UTR 30.0%
! GAAACTATCAAAAGCACAAA+AGG + tig0045486:2347-2366 Msa1465760:intergenic 30.0%
TGAAGATAGATTACTACCAT+CGG + tig0045486:2538-2557 Msa1465760:intergenic 30.0%
GTAGTAATCTATCTTCATCT+TGG - tig0045486:2541-2560 Msa1465760:intron 30.0%
! TTCTTTTCACTTGATACCTT+AGG - tig0045486:2609-2628 Msa1465760:CDS 30.0%
! TCTTTTCACTTGATACCTTA+GGG - tig0045486:2610-2629 Msa1465760:CDS 30.0%
!!! TTATTTTAAACGGGATCCAA+TGG - tig0045486:672-691 Msa1465760:three_prime_UTR 30.0%
TCTGTGAATTAAGTGGAATT+TGG + tig0045486:896-915 Msa1465760:intergenic 30.0%
GAAGGAAATAAACAGTAAAC+TGG + tig0045486:985-1004 Msa1465760:intergenic 30.0%
TCATCATCACTATGATGATT+TGG + tig0045486:1145-1164 Msa1465760:intergenic 30.0%
ACAATAACTGTTATCACATG+GGG + tig0045486:1648-1667 Msa1465760:intergenic 30.0%
CACAATAACTGTTATCACAT+GGG + tig0045486:1649-1668 Msa1465760:intergenic 30.0%
ACACAATAACTGTTATCACA+TGG + tig0045486:1650-1669 Msa1465760:intergenic 30.0%
TGTGATAACAGTTATTGTGT+TGG - tig0045486:1650-1669 Msa1465760:intron 30.0%
GTGATAACAGTTATTGTGTT+GGG - tig0045486:1651-1670 Msa1465760:intron 30.0%
ACACAAATCATATATGTGCA+AGG - tig0045486:1699-1718 Msa1465760:intron 30.0%
AATACATAGCTATTGATGTG+TGG - tig0045486:2043-2062 Msa1465760:intron 30.0%
GTATAATATAAGTGTGGCAT+TGG - tig0045486:2080-2099 Msa1465760:three_prime_UTR 30.0%
TTGATGGAACTGTTAAAATC+TGG - tig0045486:2241-2260 Msa1465760:three_prime_UTR 30.0%
TGATGGAACTGTTAAAATCT+GGG - tig0045486:2242-2261 Msa1465760:three_prime_UTR 30.0%
! GAAACTATCAAAAGCACAAA+AGG + tig0045486:2347-2366 Msa1465760:intergenic 30.0%
TGAAGATAGATTACTACCAT+CGG + tig0045486:2538-2557 Msa1465760:intergenic 30.0%
GTAGTAATCTATCTTCATCT+TGG - tig0045486:2541-2560 Msa1465760:intron 30.0%
! TTCTTTTCACTTGATACCTT+AGG - tig0045486:2609-2628 Msa1465760:CDS 30.0%
! TCTTTTCACTTGATACCTTA+GGG - tig0045486:2610-2629 Msa1465760:CDS 30.0%
!!! GAATGAATGGATTTTCAGGT+TGG + tig0045486:728-747 Msa1465760:intergenic 35.0%
!! CACTGAATGAATGGATTTTC+AGG + tig0045486:732-751 Msa1465760:intergenic 35.0%
CTGAAAATCCATTCATTCAG+TGG - tig0045486:730-749 Msa1465760:three_prime_UTR 35.0%
TGTTCAATCCACTGAATGAA+TGG + tig0045486:741-760 Msa1465760:intergenic 35.0%
!! AAGAGTGTCTGTGAATTAAG+TGG + tig0045486:903-922 Msa1465760:intergenic 35.0%
ATTATCTTGCCCCTTATAGA+AGG + tig0045486:1003-1022 Msa1465760:intergenic 35.0%
TTAAATATCGCAGATGGTGA+TGG - tig0045486:1398-1417 Msa1465760:intron 35.0%
CTTTCTTGGATTCTTGTGTA+GGG - tig0045486:1753-1772 Msa1465760:intron 35.0%
TTTCTTGGATTCTTGTGTAG+GGG - tig0045486:1754-1773 Msa1465760:intron 35.0%
ATGTTTCAACCCATACGATT+GGG - tig0045486:2011-2030 Msa1465760:intron 35.0%
!! GTTTGTTATCAATCTTGTGC+AGG - tig0045486:2153-2172 Msa1465760:three_prime_UTR 35.0%
ACAGATTCTGTATCGAGTTT+AGG - tig0045486:2180-2199 Msa1465760:three_prime_UTR 35.0%
TGAGCCACTGTAAGATTTAA+CGG + tig0045486:2380-2399 Msa1465760:intergenic 35.0%
ATTCATCAAAACCAGCAATG+AGG + tig0045486:2425-2444 Msa1465760:intergenic 35.0%
! GACTTCCTTATGTCGTTTAA+TGG - tig0045486:2477-2496 Msa1465760:intron 35.0%
GAAGATAGATTACTACCATC+GGG + tig0045486:2537-2556 Msa1465760:intergenic 35.0%
AGTACATATTGTTCTCCCTA+AGG + tig0045486:2628-2647 Msa1465760:intergenic 35.0%
TTAGGGAGAACAATATGTAC+TGG - tig0045486:2627-2646 Msa1465760:CDS 35.0%
!!! TTTTGGGTTCCATATTCTCA+AGG + tig0045486:2667-2686 Msa1465760:intergenic 35.0%
AGAATATGGAACCCAAAAAG+TGG - tig0045486:2669-2688 Msa1465760:CDS 35.0%
!!! GAATGCTTTCTCCACTTTTT+GGG + tig0045486:2683-2702 Msa1465760:intergenic 35.0%
!! TGAATGCTTTCTCCACTTTT+TGG + tig0045486:2684-2703 Msa1465760:intergenic 35.0%
!!! GAATGAATGGATTTTCAGGT+TGG + tig0045486:728-747 Msa1465760:intergenic 35.0%
!! CACTGAATGAATGGATTTTC+AGG + tig0045486:732-751 Msa1465760:intergenic 35.0%
CTGAAAATCCATTCATTCAG+TGG - tig0045486:730-749 Msa1465760:three_prime_UTR 35.0%
TGTTCAATCCACTGAATGAA+TGG + tig0045486:741-760 Msa1465760:intergenic 35.0%
!! AAGAGTGTCTGTGAATTAAG+TGG + tig0045486:903-922 Msa1465760:intergenic 35.0%
ATTATCTTGCCCCTTATAGA+AGG + tig0045486:1003-1022 Msa1465760:intergenic 35.0%
TTAAATATCGCAGATGGTGA+TGG - tig0045486:1398-1417 Msa1465760:intron 35.0%
CTTTCTTGGATTCTTGTGTA+GGG - tig0045486:1753-1772 Msa1465760:intron 35.0%
TTTCTTGGATTCTTGTGTAG+GGG - tig0045486:1754-1773 Msa1465760:intron 35.0%
ATGTTTCAACCCATACGATT+GGG - tig0045486:2011-2030 Msa1465760:intron 35.0%
!! GTTTGTTATCAATCTTGTGC+AGG - tig0045486:2153-2172 Msa1465760:three_prime_UTR 35.0%
ACAGATTCTGTATCGAGTTT+AGG - tig0045486:2180-2199 Msa1465760:three_prime_UTR 35.0%
TGAGCCACTGTAAGATTTAA+CGG + tig0045486:2380-2399 Msa1465760:intergenic 35.0%
ATTCATCAAAACCAGCAATG+AGG + tig0045486:2425-2444 Msa1465760:intergenic 35.0%
! GACTTCCTTATGTCGTTTAA+TGG - tig0045486:2477-2496 Msa1465760:intron 35.0%
GAAGATAGATTACTACCATC+GGG + tig0045486:2537-2556 Msa1465760:intergenic 35.0%
AGTACATATTGTTCTCCCTA+AGG + tig0045486:2628-2647 Msa1465760:intergenic 35.0%
TTAGGGAGAACAATATGTAC+TGG - tig0045486:2627-2646 Msa1465760:CDS 35.0%
!!! TTTTGGGTTCCATATTCTCA+AGG + tig0045486:2667-2686 Msa1465760:intergenic 35.0%
AGAATATGGAACCCAAAAAG+TGG - tig0045486:2669-2688 Msa1465760:CDS 35.0%
!!! GAATGCTTTCTCCACTTTTT+GGG + tig0045486:2683-2702 Msa1465760:intergenic 35.0%
!! TGAATGCTTTCTCCACTTTT+TGG + tig0045486:2684-2703 Msa1465760:intergenic 35.0%
CGGAGGTTAATATTTGCCAT+TGG + tig0045486:691-710 Msa1465760:intergenic 40.0%
! GGTTGGCGTCTAAAATAACA+CGG + tig0045486:711-730 Msa1465760:intergenic 40.0%
GGAGAAGAATATGAAGCAGT+GGG + tig0045486:939-958 Msa1465760:intergenic 40.0%
AGGAGAAGAATATGAAGCAG+TGG + tig0045486:940-959 Msa1465760:intergenic 40.0%
! CAGCTTTGTAGAAGTTGGAA+AGG + tig0045486:960-979 Msa1465760:intergenic 40.0%
! TGGTTCAGCTTTGTAGAAGT+TGG + tig0045486:965-984 Msa1465760:intergenic 40.0%
GATTCTGTGCATACATTCAC+TGG - tig0045486:1503-1522 Msa1465760:three_prime_UTR 40.0%
CATACATTCACTGGTCATGA+TGG - tig0045486:1512-1531 Msa1465760:three_prime_UTR 40.0%
! TGTTTTTCCTTTTTCCGTCC+TGG - tig0045486:1559-1578 Msa1465760:three_prime_UTR 40.0%
AATCAAACCAGGACGGAAAA+AGG + tig0045486:1569-1588 Msa1465760:intergenic 40.0%
!! TTTTTCCGTCCTGGTTTGAT+TGG - tig0045486:1568-1587 Msa1465760:three_prime_UTR 40.0%
!! TTTTCCGTCCTGGTTTGATT+GGG - tig0045486:1569-1588 Msa1465760:three_prime_UTR 40.0%
GCTTTCTTGGATTCTTGTGT+AGG - tig0045486:1752-1771 Msa1465760:intron 40.0%
! TTTCTCTGGAGGATCCTTAA+TGG - tig0045486:1848-1867 Msa1465760:intron 40.0%
GAGGATCCTTAATGGAGAAT+GGG - tig0045486:1856-1875 Msa1465760:three_prime_UTR 40.0%
!! AGTGGTTAGTTTGTTAGGGT+AGG - tig0045486:1927-1946 Msa1465760:three_prime_UTR 40.0%
!! GTGGTTAGTTTGTTAGGGTA+GGG - tig0045486:1928-1947 Msa1465760:three_prime_UTR 40.0%
!! TGGTTAGTTTGTTAGGGTAG+GGG - tig0045486:1929-1948 Msa1465760:three_prime_UTR 40.0%
TAGTAGCAGAGATTGAACTC+TGG - tig0045486:1965-1984 Msa1465760:intron 40.0%
ACATCGAAGGAGTTCAATGT+AGG + tig0045486:1995-2014 Msa1465760:intergenic 40.0%
GATGTTTCAACCCATACGAT+TGG - tig0045486:2010-2029 Msa1465760:intron 40.0%
ATGCAGATACCCAATCGTAT+GGG + tig0045486:2023-2042 Msa1465760:intergenic 40.0%
TATGCAGATACCCAATCGTA+TGG + tig0045486:2024-2043 Msa1465760:intergenic 40.0%
!! TGTGGCATTGGCATGATAAT+TGG - tig0045486:2092-2111 Msa1465760:three_prime_UTR 40.0%
! AGTTTAGGATTTAGCCACGA+TGG - tig0045486:2195-2214 Msa1465760:three_prime_UTR 40.0%
! AATCTGAAAGGCACGTTAGA+TGG - tig0045486:2276-2295 Msa1465760:three_prime_UTR 40.0%
GTTGCCGTTAAATCTTACAG+TGG - tig0045486:2373-2392 Msa1465760:three_prime_UTR 40.0%
GTTAAATCTTACAGTGGCTC+AGG - tig0045486:2379-2398 Msa1465760:three_prime_UTR 40.0%
CGTGACCATTAAACGACATA+AGG + tig0045486:2485-2504 Msa1465760:intergenic 40.0%
ACGATGCAACCTTGAGAATA+TGG - tig0045486:2655-2674 Msa1465760:CDS 40.0%
CGGAGGTTAATATTTGCCAT+TGG + tig0045486:691-710 Msa1465760:intergenic 40.0%
! GGTTGGCGTCTAAAATAACA+CGG + tig0045486:711-730 Msa1465760:intergenic 40.0%
GGAGAAGAATATGAAGCAGT+GGG + tig0045486:939-958 Msa1465760:intergenic 40.0%
AGGAGAAGAATATGAAGCAG+TGG + tig0045486:940-959 Msa1465760:intergenic 40.0%
! CAGCTTTGTAGAAGTTGGAA+AGG + tig0045486:960-979 Msa1465760:intergenic 40.0%
! TGGTTCAGCTTTGTAGAAGT+TGG + tig0045486:965-984 Msa1465760:intergenic 40.0%
GATTCTGTGCATACATTCAC+TGG - tig0045486:1503-1522 Msa1465760:three_prime_UTR 40.0%
CATACATTCACTGGTCATGA+TGG - tig0045486:1512-1531 Msa1465760:three_prime_UTR 40.0%
! TGTTTTTCCTTTTTCCGTCC+TGG - tig0045486:1559-1578 Msa1465760:three_prime_UTR 40.0%
AATCAAACCAGGACGGAAAA+AGG + tig0045486:1569-1588 Msa1465760:intergenic 40.0%
!! TTTTTCCGTCCTGGTTTGAT+TGG - tig0045486:1568-1587 Msa1465760:three_prime_UTR 40.0%
!! TTTTCCGTCCTGGTTTGATT+GGG - tig0045486:1569-1588 Msa1465760:three_prime_UTR 40.0%
GCTTTCTTGGATTCTTGTGT+AGG - tig0045486:1752-1771 Msa1465760:intron 40.0%
! TTTCTCTGGAGGATCCTTAA+TGG - tig0045486:1848-1867 Msa1465760:intron 40.0%
GAGGATCCTTAATGGAGAAT+GGG - tig0045486:1856-1875 Msa1465760:three_prime_UTR 40.0%
!! AGTGGTTAGTTTGTTAGGGT+AGG - tig0045486:1927-1946 Msa1465760:three_prime_UTR 40.0%
!! GTGGTTAGTTTGTTAGGGTA+GGG - tig0045486:1928-1947 Msa1465760:three_prime_UTR 40.0%
!! TGGTTAGTTTGTTAGGGTAG+GGG - tig0045486:1929-1948 Msa1465760:three_prime_UTR 40.0%
TAGTAGCAGAGATTGAACTC+TGG - tig0045486:1965-1984 Msa1465760:intron 40.0%
ACATCGAAGGAGTTCAATGT+AGG + tig0045486:1995-2014 Msa1465760:intergenic 40.0%
GATGTTTCAACCCATACGAT+TGG - tig0045486:2010-2029 Msa1465760:intron 40.0%
ATGCAGATACCCAATCGTAT+GGG + tig0045486:2023-2042 Msa1465760:intergenic 40.0%
TATGCAGATACCCAATCGTA+TGG + tig0045486:2024-2043 Msa1465760:intergenic 40.0%
!! TGTGGCATTGGCATGATAAT+TGG - tig0045486:2092-2111 Msa1465760:three_prime_UTR 40.0%
! AGTTTAGGATTTAGCCACGA+TGG - tig0045486:2195-2214 Msa1465760:three_prime_UTR 40.0%
! AATCTGAAAGGCACGTTAGA+TGG - tig0045486:2276-2295 Msa1465760:three_prime_UTR 40.0%
GTTGCCGTTAAATCTTACAG+TGG - tig0045486:2373-2392 Msa1465760:three_prime_UTR 40.0%
GTTAAATCTTACAGTGGCTC+AGG - tig0045486:2379-2398 Msa1465760:three_prime_UTR 40.0%
CGTGACCATTAAACGACATA+AGG + tig0045486:2485-2504 Msa1465760:intergenic 40.0%
ACGATGCAACCTTGAGAATA+TGG - tig0045486:2655-2674 Msa1465760:CDS 40.0%
! TGGCGTCTAAAATAACACGG+AGG + tig0045486:708-727 Msa1465760:intergenic 45.0%
GAAGAGAACGCACCTGATAA+TGG + tig0045486:781-800 Msa1465760:intergenic 45.0%
!! AGTGCTGCTTTCACTTGTGT+AGG - tig0045486:867-886 Msa1465760:three_prime_UTR 45.0%
GGAAGAAGTTCATCGTCAGA+GGG + tig0045486:1244-1263 Msa1465760:intergenic 45.0%
AGGAAGAAGTTCATCGTCAG+AGG + tig0045486:1245-1264 Msa1465760:intergenic 45.0%
ATGTTACTATGTAGGCCACC+TGG + tig0045486:1325-1344 Msa1465760:intergenic 45.0%
!! TTTGATTGGGTTGGGAACCT+AGG - tig0045486:1582-1601 Msa1465760:three_prime_UTR 45.0%
! AGAAGCACACTACAAGTCCT+AGG + tig0045486:1602-1621 Msa1465760:intergenic 45.0%
CTTGTAGTGTGCTTCTCTCT+AGG - tig0045486:1606-1625 Msa1465760:intron 45.0%
! GTGATGACGTAGGATTTCTC+TGG - tig0045486:1834-1853 Msa1465760:intron 45.0%
ATGACGTAGGATTTCTCTGG+AGG - tig0045486:1837-1856 Msa1465760:intron 45.0%
GGAGGATCCTTAATGGAGAA+TGG - tig0045486:1855-1874 Msa1465760:three_prime_UTR 45.0%
!! GGTTAGTTTGTTAGGGTAGG+GGG - tig0045486:1930-1949 Msa1465760:three_prime_UTR 45.0%
TCGAAGGAGTTCAATGTAGG+AGG + tig0045486:1992-2011 Msa1465760:intergenic 45.0%
! CGTATGGGTTGAAACATCGA+AGG + tig0045486:2008-2027 Msa1465760:intergenic 45.0%
!! CTGGCATCAGGAAGTTTTGA+TGG - tig0045486:2225-2244 Msa1465760:three_prime_UTR 45.0%
! GTTAAAATCTGGGATGCGTC+TGG - tig0045486:2252-2271 Msa1465760:three_prime_UTR 45.0%
GATGCGTCTGGAAATCTGAA+AGG - tig0045486:2264-2283 Msa1465760:three_prime_UTR 45.0%
AAATCTTACAGTGGCTCAGG+TGG - tig0045486:2382-2401 Msa1465760:three_prime_UTR 45.0%
GCAATGAGGACATTTCCTCT+TGG + tig0045486:2411-2430 Msa1465760:intergenic 45.0%
AGAGGAAATGTCCTCATTGC+TGG - tig0045486:2411-2430 Msa1465760:CDS 45.0%
TTGATGAATCCTCCTCAGTG+TGG - tig0045486:2436-2455 Msa1465760:CDS 45.0%
! ATGTCGTTTAATGGTCACGC+TGG - tig0045486:2486-2505 Msa1465760:intron 45.0%
ATCGGGAGTAAAATCACCAC+AGG + tig0045486:2520-2539 Msa1465760:intergenic 45.0%
! TGTGGTGATTTTACTCCCGA+TGG - tig0045486:2519-2538 Msa1465760:intron 45.0%
!! GAAAGCATTCATGTTGTGCG+AGG - tig0045486:2693-2712 Msa1465760:CDS 45.0%
! TGGCGTCTAAAATAACACGG+AGG + tig0045486:708-727 Msa1465760:intergenic 45.0%
GAAGAGAACGCACCTGATAA+TGG + tig0045486:781-800 Msa1465760:intergenic 45.0%
!! AGTGCTGCTTTCACTTGTGT+AGG - tig0045486:867-886 Msa1465760:three_prime_UTR 45.0%
GGAAGAAGTTCATCGTCAGA+GGG + tig0045486:1244-1263 Msa1465760:intergenic 45.0%
AGGAAGAAGTTCATCGTCAG+AGG + tig0045486:1245-1264 Msa1465760:intergenic 45.0%
ATGTTACTATGTAGGCCACC+TGG + tig0045486:1325-1344 Msa1465760:intergenic 45.0%
!! TTTGATTGGGTTGGGAACCT+AGG - tig0045486:1582-1601 Msa1465760:three_prime_UTR 45.0%
! AGAAGCACACTACAAGTCCT+AGG + tig0045486:1602-1621 Msa1465760:intergenic 45.0%
CTTGTAGTGTGCTTCTCTCT+AGG - tig0045486:1606-1625 Msa1465760:intron 45.0%
! GTGATGACGTAGGATTTCTC+TGG - tig0045486:1834-1853 Msa1465760:intron 45.0%
ATGACGTAGGATTTCTCTGG+AGG - tig0045486:1837-1856 Msa1465760:intron 45.0%
GGAGGATCCTTAATGGAGAA+TGG - tig0045486:1855-1874 Msa1465760:three_prime_UTR 45.0%
!! GGTTAGTTTGTTAGGGTAGG+GGG - tig0045486:1930-1949 Msa1465760:three_prime_UTR 45.0%
TCGAAGGAGTTCAATGTAGG+AGG + tig0045486:1992-2011 Msa1465760:intergenic 45.0%
! CGTATGGGTTGAAACATCGA+AGG + tig0045486:2008-2027 Msa1465760:intergenic 45.0%
!! CTGGCATCAGGAAGTTTTGA+TGG - tig0045486:2225-2244 Msa1465760:three_prime_UTR 45.0%
! GTTAAAATCTGGGATGCGTC+TGG - tig0045486:2252-2271 Msa1465760:three_prime_UTR 45.0%
GATGCGTCTGGAAATCTGAA+AGG - tig0045486:2264-2283 Msa1465760:three_prime_UTR 45.0%
AAATCTTACAGTGGCTCAGG+TGG - tig0045486:2382-2401 Msa1465760:three_prime_UTR 45.0%
GCAATGAGGACATTTCCTCT+TGG + tig0045486:2411-2430 Msa1465760:intergenic 45.0%
AGAGGAAATGTCCTCATTGC+TGG - tig0045486:2411-2430 Msa1465760:CDS 45.0%
TTGATGAATCCTCCTCAGTG+TGG - tig0045486:2436-2455 Msa1465760:CDS 45.0%
! ATGTCGTTTAATGGTCACGC+TGG - tig0045486:2486-2505 Msa1465760:intron 45.0%
ATCGGGAGTAAAATCACCAC+AGG + tig0045486:2520-2539 Msa1465760:intergenic 45.0%
! TGTGGTGATTTTACTCCCGA+TGG - tig0045486:2519-2538 Msa1465760:intron 45.0%
!! GAAAGCATTCATGTTGTGCG+AGG - tig0045486:2693-2712 Msa1465760:CDS 45.0%
!! GCACCTGATAATGGAGACGA+CGG + tig0045486:772-791 Msa1465760:intergenic 50.0%
CATCGTCAGAGGGAACTTCA+TGG + tig0045486:1234-1253 Msa1465760:intergenic 50.0%
ACTATGTAGGCCACCTGGAT+CGG + tig0045486:1320-1339 Msa1465760:intergenic 50.0%
!! ATCGCAGATGGTGATGGTGA+TGG - tig0045486:1404-1423 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
CCAACCCAATCAAACCAGGA+CGG + tig0045486:1576-1595 Msa1465760:intergenic 50.0%
! CGTCCTGGTTTGATTGGGTT+GGG - tig0045486:1574-1593 Msa1465760:three_prime_UTR 50.0%
GTTCCCAACCCAATCAAACC+AGG + tig0045486:1580-1599 Msa1465760:intergenic 50.0%
CCACAAGTGCCTCATCTGTT+GGG + tig0045486:1802-1821 Msa1465760:intergenic 50.0%
GGGAAGCCCATTCTCCATTA+AGG + tig0045486:1865-1884 Msa1465760:intergenic 50.0%
! GAATGGGCTTCCCAGCTTAA+TGG - tig0045486:1872-1891 Msa1465760:three_prime_UTR 50.0%
TAGCCACGATGGAACGTTTC+TGG - tig0045486:2206-2225 Msa1465760:three_prime_UTR 50.0%
ATGCCAGAAACGTTCCATCG+TGG + tig0045486:2212-2231 Msa1465760:intergenic 50.0%
!! GATGGAACGTTTCTGGCATC+AGG - tig0045486:2213-2232 Msa1465760:three_prime_UTR 50.0%
GCACGTTAGATGGTCCTGAA+GGG - tig0045486:2286-2305 Msa1465760:three_prime_UTR 50.0%
CACGTTAGATGGTCCTGAAG+GGG - tig0045486:2287-2306 Msa1465760:three_prime_UTR 50.0%
ACGTTAGATGGTCCTGAAGG+GGG - tig0045486:2288-2307 Msa1465760:three_prime_UTR 50.0%
AATCCTCCTCAGTGTGGATG+TGG - tig0045486:2442-2461 Msa1465760:CDS 50.0%
ATTCCACATCCACACTGAGG+AGG + tig0045486:2448-2467 Msa1465760:intergenic 50.0%
GCTATTCCACATCCACACTG+AGG + tig0045486:2451-2470 Msa1465760:intergenic 50.0%
!! GCACCTGATAATGGAGACGA+CGG + tig0045486:772-791 Msa1465760:intergenic 50.0%
CATCGTCAGAGGGAACTTCA+TGG + tig0045486:1234-1253 Msa1465760:intergenic 50.0%
ACTATGTAGGCCACCTGGAT+CGG + tig0045486:1320-1339 Msa1465760:intergenic 50.0%
!! ATCGCAGATGGTGATGGTGA+TGG - tig0045486:1404-1423 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - tig0045486:1410-1429 Msa1465760:intron 50.0%
CCAACCCAATCAAACCAGGA+CGG + tig0045486:1576-1595 Msa1465760:intergenic 50.0%
! CGTCCTGGTTTGATTGGGTT+GGG - tig0045486:1574-1593 Msa1465760:three_prime_UTR 50.0%
GTTCCCAACCCAATCAAACC+AGG + tig0045486:1580-1599 Msa1465760:intergenic 50.0%
CCACAAGTGCCTCATCTGTT+GGG + tig0045486:1802-1821 Msa1465760:intergenic 50.0%
GGGAAGCCCATTCTCCATTA+AGG + tig0045486:1865-1884 Msa1465760:intergenic 50.0%
! GAATGGGCTTCCCAGCTTAA+TGG - tig0045486:1872-1891 Msa1465760:three_prime_UTR 50.0%
TAGCCACGATGGAACGTTTC+TGG - tig0045486:2206-2225 Msa1465760:three_prime_UTR 50.0%
ATGCCAGAAACGTTCCATCG+TGG + tig0045486:2212-2231 Msa1465760:intergenic 50.0%
!! GATGGAACGTTTCTGGCATC+AGG - tig0045486:2213-2232 Msa1465760:three_prime_UTR 50.0%
GCACGTTAGATGGTCCTGAA+GGG - tig0045486:2286-2305 Msa1465760:three_prime_UTR 50.0%
CACGTTAGATGGTCCTGAAG+GGG - tig0045486:2287-2306 Msa1465760:three_prime_UTR 50.0%
ACGTTAGATGGTCCTGAAGG+GGG - tig0045486:2288-2307 Msa1465760:three_prime_UTR 50.0%
AATCCTCCTCAGTGTGGATG+TGG - tig0045486:2442-2461 Msa1465760:CDS 50.0%
ATTCCACATCCACACTGAGG+AGG + tig0045486:2448-2467 Msa1465760:intergenic 50.0%
GCTATTCCACATCCACACTG+AGG + tig0045486:2451-2470 Msa1465760:intergenic 50.0%
!! CCTGATAATGGAGACGACGG+CGG + tig0045486:769-788 Msa1465760:intergenic 55.0%
GGATTGTCGTCAGGTGCATC+AGG + tig0045486:1265-1284 Msa1465760:intergenic 55.0%
GCACCTGACGACAATCCAGA+TGG - tig0045486:1268-1287 Msa1465760:intron 55.0%
CCACCATCTGGATTGTCGTC+AGG + tig0045486:1274-1293 Msa1465760:intergenic 55.0%
CCTGACGACAATCCAGATGG+TGG - tig0045486:1271-1290 Msa1465760:intron 55.0%
CTATGTAGGCCACCTGGATC+GGG + tig0045486:1319-1338 Msa1465760:intergenic 55.0%
!! GGTGATGGTGATGGTGATGG+TGG - tig0045486:1413-1432 Msa1465760:intron 55.0%
!! GATGGTGATGGTGATGGTGG+TGG - tig0045486:1440-1459 Msa1465760:intron 55.0%
!! GATGGTGATGGTGGTGGTGA+TGG - tig0045486:1446-1465 Msa1465760:intron 55.0%
!! GATGGTGGTGGTGGTGGTAA+TGG - tig0045486:1464-1483 Msa1465760:intron 55.0%
! CCGTCCTGGTTTGATTGGGT+TGG - tig0045486:1573-1592 Msa1465760:three_prime_UTR 55.0%
! CCCAACAGATGAGGCACTTG+TGG - tig0045486:1799-1818 Msa1465760:intron 55.0%
GCCACAAGTGCCTCATCTGT+TGG + tig0045486:1803-1822 Msa1465760:intergenic 55.0%
! GATGAGGCACTTGTGGCAAC+AGG - tig0045486:1806-1825 Msa1465760:intron 55.0%
! ACAGGAGCTGGTGATGACGT+AGG - tig0045486:1824-1843 Msa1465760:intron 55.0%
!! AGTTTGTTAGGGTAGGGGGC+TGG - tig0045486:1934-1953 Msa1465760:three_prime_UTR 55.0%
GGCACGTTAGATGGTCCTGA+AGG - tig0045486:2285-2304 Msa1465760:three_prime_UTR 55.0%
CTTACCTCAACTCCCCCTTC+AGG + tig0045486:2303-2322 Msa1465760:intergenic 55.0%
AGGGGGAGTTGAGGTAAGAC+TGG - tig0045486:2305-2324 Msa1465760:three_prime_UTR 55.0%
!! CCTGATAATGGAGACGACGG+CGG + tig0045486:769-788 Msa1465760:intergenic 55.0%
GGATTGTCGTCAGGTGCATC+AGG + tig0045486:1265-1284 Msa1465760:intergenic 55.0%
GCACCTGACGACAATCCAGA+TGG - tig0045486:1268-1287 Msa1465760:intron 55.0%
CCACCATCTGGATTGTCGTC+AGG + tig0045486:1274-1293 Msa1465760:intergenic 55.0%
CCTGACGACAATCCAGATGG+TGG - tig0045486:1271-1290 Msa1465760:intron 55.0%
CTATGTAGGCCACCTGGATC+GGG + tig0045486:1319-1338 Msa1465760:intergenic 55.0%
!! GGTGATGGTGATGGTGATGG+TGG - tig0045486:1413-1432 Msa1465760:intron 55.0%
!! GATGGTGATGGTGATGGTGG+TGG - tig0045486:1440-1459 Msa1465760:intron 55.0%
!! GATGGTGATGGTGGTGGTGA+TGG - tig0045486:1446-1465 Msa1465760:intron 55.0%
!! GATGGTGGTGGTGGTGGTAA+TGG - tig0045486:1464-1483 Msa1465760:intron 55.0%
! CCGTCCTGGTTTGATTGGGT+TGG - tig0045486:1573-1592 Msa1465760:three_prime_UTR 55.0%
! CCCAACAGATGAGGCACTTG+TGG - tig0045486:1799-1818 Msa1465760:intron 55.0%
GCCACAAGTGCCTCATCTGT+TGG + tig0045486:1803-1822 Msa1465760:intergenic 55.0%
! GATGAGGCACTTGTGGCAAC+AGG - tig0045486:1806-1825 Msa1465760:intron 55.0%
! ACAGGAGCTGGTGATGACGT+AGG - tig0045486:1824-1843 Msa1465760:intron 55.0%
!! AGTTTGTTAGGGTAGGGGGC+TGG - tig0045486:1934-1953 Msa1465760:three_prime_UTR 55.0%
GGCACGTTAGATGGTCCTGA+AGG - tig0045486:2285-2304 Msa1465760:three_prime_UTR 55.0%
CTTACCTCAACTCCCCCTTC+AGG + tig0045486:2303-2322 Msa1465760:intergenic 55.0%
AGGGGGAGTTGAGGTAAGAC+TGG - tig0045486:2305-2324 Msa1465760:three_prime_UTR 55.0%
!! GATAATGGAGACGACGGCGG+CGG + tig0045486:766-785 Msa1465760:intergenic 60.0%
CCGCCGTCGTCTCCATTATC+AGG - tig0045486:766-785 Msa1465760:intron 60.0%
!! GGTGATGGTGGTGGTGATGG+TGG - tig0045486:1449-1468 Msa1465760:intron 60.0%
!! GATGGTGGTGGTGATGGTGG+TGG - tig0045486:1452-1471 Msa1465760:intron 60.0%
!! GGTGGTGGTGGTGGTAATGG+TGG - tig0045486:1467-1486 Msa1465760:intron 60.0%
!! GGTGGTGGTGGTAATGGTGG+TGG - tig0045486:1470-1489 Msa1465760:intron 60.0%
TGCCTGCAGCCCAACAGATG+AGG - tig0045486:1790-1809 Msa1465760:intron 60.0%
TGCCTCATCTGTTGGGCTGC+AGG + tig0045486:1795-1814 Msa1465760:intergenic 60.0%
GCACTTGTGGCAACAGGAGC+TGG - tig0045486:1812-1831 Msa1465760:intron 60.0%
TGGTCCTGAAGGGGGAGTTG+AGG - tig0045486:2296-2315 Msa1465760:three_prime_UTR 60.0%
TGGCTCAGGTGGCATCCAAG+AGG - tig0045486:2393-2412 Msa1465760:exon 60.0%
! CACGCTGGTAGTGTGACCTG+TGG - tig0045486:2501-2520 Msa1465760:intron 60.0%
!! GATAATGGAGACGACGGCGG+CGG + tig0045486:766-785 Msa1465760:intergenic 60.0%
CCGCCGTCGTCTCCATTATC+AGG - tig0045486:766-785 Msa1465760:intron 60.0%
!! GGTGATGGTGGTGGTGATGG+TGG - tig0045486:1449-1468 Msa1465760:intron 60.0%
!! GATGGTGGTGGTGATGGTGG+TGG - tig0045486:1452-1471 Msa1465760:intron 60.0%
!! GGTGGTGGTGGTGGTAATGG+TGG - tig0045486:1467-1486 Msa1465760:intron 60.0%
!! GGTGGTGGTGGTAATGGTGG+TGG - tig0045486:1470-1489 Msa1465760:intron 60.0%
TGCCTGCAGCCCAACAGATG+AGG - tig0045486:1790-1809 Msa1465760:intron 60.0%
TGCCTCATCTGTTGGGCTGC+AGG + tig0045486:1795-1814 Msa1465760:intergenic 60.0%
GCACTTGTGGCAACAGGAGC+TGG - tig0045486:1812-1831 Msa1465760:intron 60.0%
TGGTCCTGAAGGGGGAGTTG+AGG - tig0045486:2296-2315 Msa1465760:three_prime_UTR 60.0%
TGGCTCAGGTGGCATCCAAG+AGG - tig0045486:2393-2412 Msa1465760:exon 60.0%
! CACGCTGGTAGTGTGACCTG+TGG - tig0045486:2501-2520 Msa1465760:intron 60.0%
GGAGGATCAGGGCCACCATC+TGG + tig0045486:1286-1305 Msa1465760:intergenic 65.0%
! GATGGTGGCCCTGATCCTCC+TGG - tig0045486:1286-1305 Msa1465760:intron 65.0%
GAGAGCCGCCAGGAGGATCA+GGG + tig0045486:1297-1316 Msa1465760:intergenic 65.0%
!! GGTGGTGGTGATGGTGGTGG+TGG - tig0045486:1455-1474 Msa1465760:intron 65.0%
!! GGTGGTGATGGTGGTGGTGG+TGG - tig0045486:1458-1477 Msa1465760:intron 65.0%
GGAGGATCAGGGCCACCATC+TGG + tig0045486:1286-1305 Msa1465760:intergenic 65.0%
! GATGGTGGCCCTGATCCTCC+TGG - tig0045486:1286-1305 Msa1465760:intron 65.0%
GAGAGCCGCCAGGAGGATCA+GGG + tig0045486:1297-1316 Msa1465760:intergenic 65.0%
!! GGTGGTGGTGATGGTGGTGG+TGG - tig0045486:1455-1474 Msa1465760:intron 65.0%
!! GGTGGTGATGGTGGTGGTGG+TGG - tig0045486:1458-1477 Msa1465760:intron 65.0%
GGTGGCCCTGATCCTCCTGG+CGG - tig0045486:1289-1308 Msa1465760:intron 70.0%
GGAGAGCCGCCAGGAGGATC+AGG + tig0045486:1298-1317 Msa1465760:intergenic 70.0%
GGTGGCCCTGATCCTCCTGG+CGG - tig0045486:1289-1308 Msa1465760:intron 70.0%
GGAGAGCCGCCAGGAGGATC+AGG + tig0045486:1298-1317 Msa1465760:intergenic 70.0%
GGATCGGGAGAGCCGCCAGG+AGG + tig0045486:1304-1323 Msa1465760:intergenic 75.0%
CCTGGATCGGGAGAGCCGCC+AGG + tig0045486:1307-1326 Msa1465760:intergenic 75.0%
CCTGGCGGCTCTCCCGATCC+AGG - tig0045486:1304-1323 Msa1465760:intron 75.0%
GGCGGCTCTCCCGATCCAGG+TGG - tig0045486:1307-1326 Msa1465760:intron 75.0%
GGATCGGGAGAGCCGCCAGG+AGG + tig0045486:1304-1323 Msa1465760:intergenic 75.0%
CCTGGATCGGGAGAGCCGCC+AGG + tig0045486:1307-1326 Msa1465760:intergenic 75.0%
CCTGGCGGCTCTCCCGATCC+AGG - tig0045486:1304-1323 Msa1465760:intron 75.0%
GGCGGCTCTCCCGATCCAGG+TGG - tig0045486:1307-1326 Msa1465760:intron 75.0%
Chromosome Type Strat End Strand Name
tig0045486 gene 634 2748 634 ID=Msa1465760;Name=Msa1465760
tig0045486 mRNA 634 2748 634 ID=Msa1465760-mRNA-1;Parent=Msa1465760;Name=Msa1465760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.83|0.57|1|1|0.85|7|997|81
tig0045486 exon 634 751 634 ID=Msa1465760-mRNA-1:exon:24890;Parent=Msa1465760-mRNA-1
tig0045486 exon 842 989 842 ID=Msa1465760-mRNA-1:exon:24889;Parent=Msa1465760-mRNA-1
tig0045486 exon 1065 1207 1065 ID=Msa1465760-mRNA-1:exon:24888;Parent=Msa1465760-mRNA-1
tig0045486 exon 1489 1608 1489 ID=Msa1465760-mRNA-1:exon:24887;Parent=Msa1465760-mRNA-1
tig0045486 exon 1849 1971 1849 ID=Msa1465760-mRNA-1:exon:24886;Parent=Msa1465760-mRNA-1
tig0045486 exon 2057 2493 2057 ID=Msa1465760-mRNA-1:exon:24885;Parent=Msa1465760-mRNA-1
tig0045486 exon 2595 2748 2595 ID=Msa1465760-mRNA-1:exon:24884;Parent=Msa1465760-mRNA-1
tig0045486 CDS 2595 2748 2595 ID=Msa1465760-mRNA-1:cds;Parent=Msa1465760-mRNA-1
tig0045486 CDS 2402 2493 2402 ID=Msa1465760-mRNA-1:cds;Parent=Msa1465760-mRNA-1
tig0045486 three_prime_UTR 2057 2401 2057 ID=Msa1465760-mRNA-1:three_prime_utr;Parent=Msa1465760-mRNA-1
tig0045486 three_prime_UTR 1849 1971 1849 ID=Msa1465760-mRNA-1:three_prime_utr;Parent=Msa1465760-mRNA-1
tig0045486 three_prime_UTR 1489 1608 1489 ID=Msa1465760-mRNA-1:three_prime_utr;Parent=Msa1465760-mRNA-1
tig0045486 three_prime_UTR 1065 1207 1065 ID=Msa1465760-mRNA-1:three_prime_utr;Parent=Msa1465760-mRNA-1
tig0045486 three_prime_UTR 842 989 842 ID=Msa1465760-mRNA-1:three_prime_utr;Parent=Msa1465760-mRNA-1
tig0045486 three_prime_UTR 634 751 634 ID=Msa1465760-mRNA-1:three_prime_utr;Parent=Msa1465760-mRNA-1
Gene Sequence

>Msa1465760

CTTGATTTGGTTAGTAATAATAAATCTGGACCGTTTGTTTATTTTAAACGGGATCCAATGGCAAATATTAACCTCCGTGTTATTTTAGACGCCAACCTGAAAATCCATTCATTCAGTGGATTGAACAAGCCGCCGCCGTCGTCTCCATTATCAGGTTTCCAAATTCCACTTAATTCACAGACACTCTTGTTGCTTGCTTTTCCCACTGCTTCATATTCTTCTCCTTTCCAACTTCTACAAAGCTGA
Protein sequence

>Msa1465760

LDLVSNNKSGPFVYFKRDPMANINLRVILDANLKIHSFSGLNKPPPSSPLSGFQIPLNSQTLLLLAFPTASYSSPFQLLQS*