AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003270 MtrunA17_Chr1g0155911 98.494 1195 0 2 1 1177 1 1195 0.0 2449
Msa0003270 MtrunA17_Chr8g0345421 37.341 1181 645 20 20 1161 3 1127 0.0 745
Msa0003270 MtrunA17_Chr3g0136911 34.812 1195 652 28 36 1164 53 1186 0.0 658
Msa0003270 MtrunA17_Chr8g0375171 34.146 1230 682 29 1 1164 17 1184 0.0 656
Msa0003270 MtrunA17_Chr4g0069391 27.066 1234 712 39 40 1157 29 1190 2.84e-102 351
Msa0003270 MtrunA17_Chr3g0142431 47.234 235 117 1 930 1157 2 236 4.54e-68 229
Msa0003270 MtrunA17_Chr3g0142441 36.552 290 157 6 534 810 2 277 1.12e-47 172
Msa0003270 MtrunA17_Chr4g0016641 26.829 369 235 6 764 1102 653 1016 4.37e-35 145
Msa0003270 MtrunA17_CPg0493041 26.829 369 235 6 764 1102 653 1016 4.37e-35 145
Msa0003270 MtrunA17_Chr1g0154941 35.393 178 96 5 28 196 15 182 4.88e-27 109
Msa0003270 MtrunA17_Chr1g0159041 25.407 307 184 9 691 995 53 316 1.09e-20 94.7
Msa0003270 MtrunA17_Chr1g0156761 62.712 59 13 1 401 459 21 70 3.54e-12 68.6
Msa0003270 MtrunA17_Chr4g0015541 30.233 129 75 2 967 1080 1 129 3.60e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003270 AT4G21710.1 92.905 1184 66 2 8 1173 5 1188 0.0 2291
Msa0003270 AT5G45140.2 36.234 1195 688 21 4 1165 7 1160 0.0 724
Msa0003270 AT5G45140.1 36.234 1195 688 21 4 1165 7 1160 0.0 724
Msa0003270 AT3G23780.1 34.722 1224 673 27 4 1164 10 1170 0.0 645
Msa0003270 AT3G23780.2 34.722 1224 673 27 4 1164 10 1170 0.0 645
Msa0003270 AT3G18090.1 35.669 1113 594 25 113 1164 2 1053 0.0 611
Msa0003270 AT3G18090.2 33.718 952 516 24 113 1010 2 892 1.88e-145 461
Msa0003270 AT3G18090.3 33.825 949 513 24 113 1007 2 889 4.33e-145 461
Msa0003270 AT5G45140.3 34.332 801 467 15 28 805 31 795 2.28e-140 446
Msa0003270 AT1G29940.1 26.150 1239 736 33 36 1171 16 1178 6.10e-107 364
Msa0003270 ATCG00190.1 28.267 375 228 9 764 1105 650 1016 5.59e-34 142

Find 322 sgRNAs with CRISPR-Local

Find 693 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCATCCATCACTGATTT+TGG 0.116658 1_1:+5780632 Msa0003270:CDS
TCCTATCATTATTGTGTTTC+GGG 0.145166 1_1:+5776607 Msa0003270:CDS
ATCAGGCTCCTTTCTTCTTT+TGG 0.174870 1_1:-5783332 None:intergenic
ACTCACTTGCTACTGGTAAT+TGG 0.182380 1_1:+5778204 Msa0003270:CDS
ACTCTTGTCAAAGAAGATTT+TGG 0.189211 1_1:+5781366 Msa0003270:CDS
ACCTCTTTAGTAAGCATTCT+TGG 0.208895 1_1:-5783294 None:intergenic
TATTCCTACCAGGGTTCTTC+AGG 0.232935 1_1:+5776542 Msa0003270:intron
GGAGGTTATTTCATTATTAA+TGG 0.245615 1_1:+5776230 Msa0003270:CDS
TGGGTTAAGAGGTATGTTTC+AGG 0.247868 1_1:-5783586 None:intergenic
ATGCTTCAACCTTTGGTAAT+AGG 0.250696 1_1:-5782816 None:intergenic
GCATGGTTCTTATGATAAAT+TGG 0.252027 1_1:+5781494 Msa0003270:CDS
TATTGTTCATTGTATTTATA+CGG 0.254638 1_1:-5783773 None:intergenic
GTGGCCATTTCATGTTATTC+TGG 0.256038 1_1:+5781146 Msa0003270:CDS
TTCCTATCATTATTGTGTTT+CGG 0.257329 1_1:+5776606 Msa0003270:CDS
GTATCAGAATATGCTTCTTC+TGG 0.269361 1_1:-5780594 None:intergenic
AAAATACTCACTTGTCCTTC+TGG 0.287121 1_1:-5779029 None:intergenic
CAGGTTGCACTTGATTATAT+TGG 0.290828 1_1:+5777474 Msa0003270:intron
TAACTAGACCGAAGCATAAT+AGG 0.291712 1_1:-5776143 None:intergenic
ATTATTGTGTTTCGGGCATT+GGG 0.302301 1_1:+5776614 Msa0003270:CDS
CTCACTTGCTACTGGTAATT+GGG 0.304657 1_1:+5778205 Msa0003270:CDS
GATCAAACAGTCTTTCCTTT+AGG 0.305989 1_1:-5782985 None:intergenic
TTCAGCAGCATATCCTATTC+TGG 0.311071 1_1:+5779189 Msa0003270:CDS
TACCCAAACAAAACGCATTC+AGG 0.312533 1_1:-5783722 None:intergenic
CATTATTGTGTTTCGGGCAT+TGG 0.315005 1_1:+5776613 Msa0003270:CDS
TCTGGTGAGGATGTTATTAT+TGG 0.320139 1_1:+5781640 Msa0003270:CDS
TGTTTATCCACAATGAATAA+AGG 0.325748 1_1:-5780201 None:intergenic
CTGCGCATATATACAGATTA+TGG 0.328114 1_1:+5780165 Msa0003270:CDS
TTCCTAAGCCTAGCAGCTTT+AGG 0.332431 1_1:-5775297 None:intergenic
CTTACAGTAACATCTGTAAA+AGG 0.337964 1_1:-5782255 None:intergenic
TCACAGCCCAAGCATCTTCT+TGG 0.340662 1_1:-5774077 None:intergenic
GTATCACAAATGCTTCTTCC+AGG 0.341847 1_1:-5776718 None:intergenic
TGTGGATTGACAATAATATC+AGG 0.342341 1_1:-5782141 None:intergenic
CAATAGACCGTGGCTTCTTT+CGG 0.354605 1_1:+5781207 Msa0003270:CDS
CCCACATAAGCATACTTGTT+AGG 0.355406 1_1:-5776323 None:intergenic
GACCTGGCAGGTCCTTTACT+TGG 0.355932 1_1:+5777868 Msa0003270:CDS
CGGCTACTTCTGTGCGCACT+TGG 0.356082 1_1:+5777799 Msa0003270:CDS
CAACCATATGCTTCAACCTT+TGG 0.356626 1_1:-5782823 None:intergenic
AATGTCCTAACCAACATATC+AGG 0.360678 1_1:-5779408 None:intergenic
CCAGGATTGTGCTGAGATTC+GGG 0.370484 1_1:-5774216 None:intergenic
TGTTTGTGCGCATGCTCTCT+CGG 0.371135 1_1:+5776393 Msa0003270:CDS
CGTGATGGAGGTCTTCGATT+TGG 0.372874 1_1:+5782917 Msa0003270:CDS
TTGCTTTGATAGCAAATTGC+AGG 0.373151 1_1:-5778157 None:intergenic
GGCAAAATAACGAGGAAAAC+TGG 0.376797 1_1:-5783888 None:intergenic
GAAGATGATAGGGATCATTA+TGG 0.380040 1_1:+5777832 Msa0003270:CDS
CCATCAGATTCCGTCATCAT+TGG 0.381582 1_1:-5775255 None:intergenic
TCATGCCATCCACCATCTTC+CGG 0.381665 1_1:-5780360 None:intergenic
ACCAGGATTGTGCTGAGATT+CGG 0.382183 1_1:-5774217 None:intergenic
GGTGAAGAATCTGGCCTTGA+TGG 0.390834 1_1:+5779150 Msa0003270:CDS
AGTTTACGCCATAGTGAAAC+TGG 0.391101 1_1:+5781736 Msa0003270:CDS
TTGATGTTAATACTGAAGTT+GGG 0.392600 1_1:+5780115 Msa0003270:CDS
TTACCAAAGGTTGAAGCATA+TGG 0.395470 1_1:+5782820 Msa0003270:CDS
GGAATTTCAGTTCGAATGTA+AGG 0.396044 1_1:-5776587 None:intergenic
CTACTATTCCAGTTTCACTA+TGG 0.397112 1_1:-5781744 None:intergenic
GGCGGAGGGCTGAAGATGAT+AGG 0.397377 1_1:+5777821 Msa0003270:CDS
CGAAGATTGAATTCTCCTAT+AGG 0.398531 1_1:+5778410 Msa0003270:CDS
GGAGTTGCTTCGTCCTTCCC+TGG 0.399636 1_1:+5776700 Msa0003270:CDS
CTGTGGACTGGTGAAGAATC+TGG 0.401471 1_1:+5779141 Msa0003270:CDS
TTCTGTGCGCACTTGGGCGG+AGG 0.402357 1_1:+5777806 Msa0003270:CDS
GTTTATTTCTTGAACTAGAA+AGG 0.402999 1_1:-5783564 None:intergenic
ACCTGATTGTGGTCAGGAAA+TGG 0.407698 1_1:-5780675 None:intergenic
GAGAAGGATTTGACTGAGCT+TGG 0.410570 1_1:+5776188 Msa0003270:CDS
GACATGCCCTGGACTGTAGA+AGG 0.418551 1_1:+5782111 Msa0003270:CDS
TACATTACCAGATGCGATAT+AGG 0.422509 1_1:-5783632 None:intergenic
CAATTACCTTCACGTCCTAT+AGG 0.424102 1_1:-5778425 None:intergenic
GGTTGAGATTCGTGAAAGTA+AGG 0.425517 1_1:+5781998 Msa0003270:CDS
ACCATGGTGTTGGCTCTATC+CGG 0.425755 1_1:-5781393 None:intergenic
ATAACCAGAATAACATGAAA+TGG 0.429288 1_1:-5781150 None:intergenic
ATTAGGTTCCTATTATGCTT+CGG 0.429514 1_1:+5776135 Msa0003270:intron
CATGCCATCCACCATCTTCC+GGG 0.430865 1_1:-5780359 None:intergenic
GAATTTGAACAAAATGATGA+TGG 0.431624 1_1:+5773990 Msa0003270:exon
TCAGTAGCCTTTCAAGTGTT+GGG 0.432696 1_1:+5783486 Msa0003270:three_prime_UTR
CTTAAAGACATAGACATGAT+TGG 0.434546 1_1:-5776291 None:intergenic
CTCGCTTCCTATATCGCATC+TGG 0.435756 1_1:+5783625 Msa0003270:three_prime_UTR
GTTGATGTTAATACTGAAGT+TGG 0.437128 1_1:+5780114 Msa0003270:CDS
GAACAAAACTGACATTGTTC+AGG 0.439610 1_1:+5783102 Msa0003270:CDS
CATTCATTCTTTGCAGCAAA+GGG 0.440049 1_1:+5780248 Msa0003270:CDS
TTGTCTCAAAACCACGCATT+TGG 0.441327 1_1:-5782739 None:intergenic
TCAGTCTGCTATGGGAAAAC+AGG 0.442211 1_1:+5780802 Msa0003270:CDS
TCTAAGAGGGTCATTAAGAA+AGG 0.442549 1_1:+5775354 Msa0003270:CDS
TTCGTAAATGGTTGCTGGAT+GGG 0.443022 1_1:+5779372 Msa0003270:CDS
ATTATGCAGCTGTCTTGGTT+TGG 0.447375 1_1:-5778973 None:intergenic
CTCTCTCGGGCTAGTGCCAA+AGG 0.447596 1_1:+5776407 Msa0003270:CDS
CGAGGTAGTGATGAGGCTAC+TGG 0.448765 1_1:-5783606 None:intergenic
ACATATATGCTATGACTTTG+CGG 0.448778 1_1:+5776664 Msa0003270:CDS
GGGGAAGGTGGCTGCCCACA+TGG 0.449187 1_1:+5782212 Msa0003270:CDS
ATTTGTGATACAAAATCAAC+AGG 0.449429 1_1:+5776730 Msa0003270:CDS
TGAACAATACCATTCGAAAC+TGG 0.450071 1_1:-5780850 None:intergenic
TCACGTGACCGCCCCTCAGC+AGG 0.450469 1_1:-5782899 None:intergenic
GAATGTCATTTCCCAACAAA+AGG 0.450473 1_1:-5783519 None:intergenic
TCAAAATTTACAATTCCAGC+AGG 0.453217 1_1:-5781040 None:intergenic
ATGGTGCAGTGTGTTGATAA+TGG 0.455789 1_1:+5778122 Msa0003270:intron
GCTGCTCTTCCAAGAGCTAA+TGG 0.455955 1_1:+5783257 Msa0003270:CDS
TCTCAACCCATCAGCATTTG+TGG 0.456068 1_1:-5781983 None:intergenic
ATCAGTAGCCTTTCAAGTGT+TGG 0.458400 1_1:+5783485 Msa0003270:three_prime_UTR
GATGAGGCTACTGGGTTAAG+AGG 0.459410 1_1:-5783597 None:intergenic
GGTGATGCCTTCTACAGTCC+AGG 0.461573 1_1:-5782118 None:intergenic
ACGATTTATAAGATAAGCTT+CGG 0.462716 1_1:+5775213 Msa0003270:intron
TGTTGCTCTTCCTGAGATAG+AGG 0.464497 1_1:-5781673 None:intergenic
AGTAAGCATTCTTGGAGCTA+TGG 0.468466 1_1:-5783286 None:intergenic
GCCCGAAACACAATAATGAT+AGG 0.468885 1_1:-5776608 None:intergenic
AGCCACGGTCTATTGATGAT+TGG 0.469458 1_1:-5781199 None:intergenic
ATACCTTCTCGAATGACAAT+TGG 0.469660 1_1:+5782168 Msa0003270:CDS
TCCAAGAATGCTTACTAAAG+AGG 0.470301 1_1:+5783293 Msa0003270:CDS
TGGTGCAGTGTGTTGATAAT+GGG 0.471555 1_1:+5778123 Msa0003270:intron
TGGCCATAGCCATTAGCTCT+TGG 0.472606 1_1:-5783266 None:intergenic
AATACAATGAACAATACATA+TGG 0.473339 1_1:+5783780 Msa0003270:three_prime_UTR
GAAAGTTGACTAGAGATGTC+AGG 0.473617 1_1:+5778013 Msa0003270:CDS
TGGAAATAAGAGGCTGGACC+TGG 0.473901 1_1:+5777852 Msa0003270:CDS
TGTCCTTCTGGTGTTTCTGC+CGG 0.475033 1_1:-5779017 None:intergenic
AAACAGGGCACAAGAGTGTC+TGG 0.475708 1_1:+5781622 Msa0003270:intron
TGAGAAGGTTCTTATTGCTC+AGG 0.475780 1_1:+5776256 Msa0003270:CDS
CTTCATTGCTTAGGATACCT+TGG 0.476392 1_1:+5780943 Msa0003270:intron
ACCATTTCCTGACCACAATC+AGG 0.477185 1_1:+5780674 Msa0003270:CDS
AAATCACCCAAGAAGATGCT+TGG 0.478143 1_1:+5774070 Msa0003270:CDS
AGTCATAGCATATATGTTCA+AGG 0.478209 1_1:-5776658 None:intergenic
ACCTAACAAGTATGCTTATG+TGG 0.478358 1_1:+5776322 Msa0003270:CDS
CAGTCGTCCTTTATTCATTG+TGG 0.479150 1_1:+5780194 Msa0003270:CDS
TGTGAATTATGCAGCTGTCT+TGG 0.480800 1_1:-5778978 None:intergenic
TGCTAAGGACATCCTTCAAA+AGG 0.481337 1_1:+5777631 Msa0003270:CDS
ACAGCTGCATAATTCACAAT+GGG 0.482151 1_1:+5778983 Msa0003270:CDS
CAGGCCCTCGTCCACGAGAA+TGG 0.484101 1_1:-5782856 None:intergenic
TCTTCGCAAGTGTGATAAAG+TGG 0.484935 1_1:-5778393 None:intergenic
ATATTTACCTGATTGTGGTC+AGG 0.486379 1_1:-5780681 None:intergenic
GACATTCCATTTATATGTCA+AGG 0.489193 1_1:+5783535 Msa0003270:three_prime_UTR
TTCCTAAAGCTGCTAGGCTT+AGG 0.490381 1_1:+5775295 Msa0003270:CDS
CATTGAGAAAGCTGAGACGT+CGG 0.490993 1_1:+5779427 Msa0003270:CDS
CCCGAATCTCAGCACAATCC+TGG 0.491788 1_1:+5774216 Msa0003270:CDS
CTTCAGGAATCCCCGGAAGA+TGG 0.493231 1_1:+5780348 Msa0003270:intron
CACAGCCCAAGCATCTTCTT+GGG 0.493374 1_1:-5774076 None:intergenic
TAATACGTATCAGTCTGCTA+TGG 0.493398 1_1:+5780793 Msa0003270:CDS
ATGCTTCCCCATGTTGGTGT+TGG 0.495081 1_1:+5777656 Msa0003270:CDS
AATCACCCAAGAAGATGCTT+GGG 0.495727 1_1:+5774071 Msa0003270:CDS
GATATATTCTATAAAGCCCT+TGG 0.497908 1_1:-5780391 None:intergenic
TACTAGAGCTGGAGTGTCAC+AGG 0.497939 1_1:+5778247 Msa0003270:CDS
ATTCCTACCAGGGTTCTTCA+GGG 0.499140 1_1:+5776543 Msa0003270:intron
AAACGAATTCGATCAGCAAA+TGG 0.500946 1_1:+5774026 Msa0003270:CDS
GTTTGTGCGCATGCTCTCTC+GGG 0.501249 1_1:+5776394 Msa0003270:CDS
TATTATTTAGGCCTGTGGAC+TGG 0.503091 1_1:+5779129 Msa0003270:intron
AATGCTGCGGGTACTAGAGC+TGG 0.503185 1_1:+5778236 Msa0003270:CDS
TGCTATGGGAAAACAGGCAA+TGG 0.504068 1_1:+5780808 Msa0003270:CDS
CTAAAGAGTCCGCCAAGTAA+AGG 0.504424 1_1:-5777880 None:intergenic
CAGCTTATCGAGTGTATCAT+GGG 0.504678 1_1:+5782192 Msa0003270:CDS
CATTGTTTCCTAAAGCTGCT+AGG 0.505265 1_1:+5775289 Msa0003270:CDS
AGTACTGACATTAATTGTCA+TGG 0.507465 1_1:-5780445 None:intergenic
GCGACCCTGATATGTTGGTT+AGG 0.509462 1_1:+5779403 Msa0003270:CDS
TTTCGTAAATGGTTGCTGGA+TGG 0.509610 1_1:+5779371 Msa0003270:CDS
TCAGCTTATCGAGTGTATCA+TGG 0.509852 1_1:+5782191 Msa0003270:CDS
TGTCAGGGGTTATGTGCAAA+AGG 0.510229 1_1:+5778029 Msa0003270:CDS
ATGCTTATGTGGGTGAAGTT+CGG 0.510668 1_1:+5776333 Msa0003270:CDS
TCTGTGCGCACTTGGGCGGA+GGG 0.511484 1_1:+5777807 Msa0003270:CDS
ACAATGTACAATGGTCATAC+AGG 0.512140 1_1:+5782758 Msa0003270:CDS
AAGATCCATTCTCGTGGACG+AGG 0.512805 1_1:+5782851 Msa0003270:CDS
CTTAAGTACTCACTTGCTAC+TGG 0.514903 1_1:+5778197 Msa0003270:CDS
TATGATAAATTGGATGATGA+TGG 0.515681 1_1:+5781504 Msa0003270:CDS
GGCTACTTCTGTGCGCACTT+GGG 0.516303 1_1:+5777800 Msa0003270:CDS
AAGAGCAGCTTACAAGCATA+AGG 0.518433 1_1:-5783243 None:intergenic
TGGGCTATTATTTAGGCCTG+TGG 0.518601 1_1:+5779124 Msa0003270:intron
GGGATCATTATGGAAATAAG+AGG 0.519050 1_1:+5777842 Msa0003270:CDS
TCCATTTCTTCAGGAATCCC+CGG 0.520597 1_1:+5780341 Msa0003270:intron
ACTTGGCGGACTCTTTAGAA+TGG 0.520767 1_1:+5777885 Msa0003270:CDS
CTAAGAGGGTCATTAAGAAA+GGG 0.522466 1_1:+5775355 Msa0003270:CDS
ATAAAAGACCAAAAGAAGAA+AGG 0.524792 1_1:+5783324 Msa0003270:CDS
ATTGAGAAAGCTGAGACGTC+GGG 0.524806 1_1:+5779428 Msa0003270:CDS
AAATAACCTCCTTGATCATA+CGG 0.525242 1_1:-5776218 None:intergenic
GTATGTTGATGTTTCTAAGA+GGG 0.526036 1_1:+5775341 Msa0003270:CDS
ATATTATCCTCAGAAGCCAC+TGG 0.528062 1_1:+5780976 Msa0003270:CDS
AATAAGAGGCTGGACCTGGC+AGG 0.528479 1_1:+5777856 Msa0003270:CDS
GTCATTTCCCAACACTTGAA+AGG 0.528559 1_1:-5783493 None:intergenic
GCTGAGGGGCGGTCACGTGA+TGG 0.528589 1_1:+5782902 Msa0003270:CDS
GCGAAATCAGACTGATGACC+AGG 0.530018 1_1:-5774234 None:intergenic
ATGTTCAAGGATATCCTTGT+CGG 0.531866 1_1:-5776645 None:intergenic
AGCAAAGCTTTACACAAATG+TGG 0.532243 1_1:+5782713 Msa0003270:CDS
TGTATGTTGATGTTTCTAAG+AGG 0.534291 1_1:+5775340 Msa0003270:CDS
CTGGCAGGTCCTTTACTTGG+CGG 0.536896 1_1:+5777871 Msa0003270:CDS
ATGGCATGATCTTGTGTCCA+AGG 0.537210 1_1:+5780374 Msa0003270:CDS
CTTCCAAGAGCTAATGGCTA+TGG 0.539070 1_1:+5783263 Msa0003270:CDS
TCTCTCGGGCTAGTGCCAAA+GGG 0.540161 1_1:+5776408 Msa0003270:CDS
GGAGAGTGTCCGTATGATCA+AGG 0.540440 1_1:+5776209 Msa0003270:CDS
ACATTCATTCTTTGCAGCAA+AGG 0.540642 1_1:+5780247 Msa0003270:CDS
AATACGTATCAGTCTGCTAT+GGG 0.541188 1_1:+5780794 Msa0003270:CDS
AATTCGAAGTTCAAATTATG+CGG 0.541633 1_1:-5773972 None:intergenic
ATACTCTCCAACACCAACAT+GGG 0.542034 1_1:-5777663 None:intergenic
CGTGATTGCATGATTGCTCA+TGG 0.542766 1_1:+5782950 Msa0003270:CDS
CTGTTGACCACAAATGCTGA+TGG 0.543482 1_1:+5781976 Msa0003270:CDS
GCTATGGGAAAACAGGCAAT+GGG 0.544962 1_1:+5780809 Msa0003270:CDS
GGGAAGGTGGCTGCCCACAT+GGG 0.545068 1_1:+5782213 Msa0003270:CDS
CAGTAGTAGACACGGTCAGA+AGG 0.545602 1_1:+5782059 Msa0003270:CDS
CAAAGGAATCAAGCTGTTGA+CGG 0.546151 1_1:-5774131 None:intergenic
CTTTGCGGATACTCAAATGA+TGG 0.546341 1_1:+5776679 Msa0003270:CDS
GCTGCCCACATGGGAAAAGA+AGG 0.546470 1_1:+5782222 Msa0003270:CDS
TCTTACAAGGCAACCTGCTG+AGG 0.547845 1_1:+5782886 Msa0003270:CDS
CAGATTCTTCACCAGTCCAC+AGG 0.550341 1_1:-5779140 None:intergenic
GTCATTAAGAAAGGGCATGA+TGG 0.550930 1_1:+5775363 Msa0003270:CDS
TATCACAAATGCTTCTTCCA+GGG 0.552036 1_1:-5776717 None:intergenic
AACAGGATCTTGTACAAGCA+AGG 0.552112 1_1:+5780565 Msa0003270:intron
ATACCATATTTACCTGATTG+TGG 0.553223 1_1:-5780686 None:intergenic
CACCCAAAATCAGTGATGGA+TGG 0.554350 1_1:-5780635 None:intergenic
GTGTGATAAAGTGGAAGCAT+AGG 0.555572 1_1:-5778384 None:intergenic
TACCATTCGAAACTGGTAGT+TGG 0.555979 1_1:-5780843 None:intergenic
ATGTCTATGTCTTTAAGAAG+AGG 0.558200 1_1:+5776297 Msa0003270:CDS
AACTGTAATGTATACCATCA+AGG 0.558598 1_1:-5779164 None:intergenic
TTGATGGTATACATTACAGT+TGG 0.558896 1_1:+5779166 Msa0003270:CDS
GTAGCTTGGGGAATCACCGC+AGG 0.559718 1_1:-5779342 None:intergenic
CATTATTAATGGCAGTGAGA+AGG 0.561304 1_1:+5776241 Msa0003270:CDS
ACGAAAATGAAGATGCTCCA+TGG 0.561361 1_1:-5781011 None:intergenic
TCATCGCGACCCTGATATGT+TGG 0.561873 1_1:+5779398 Msa0003270:CDS
TGGAGCCGCTCACTTCCTAA+AGG 0.562196 1_1:+5782970 Msa0003270:CDS
AATACTCTCCAACACCAACA+TGG 0.562396 1_1:-5777664 None:intergenic
TGTGGGTGAAGTTCGGTCCA+TGG 0.562592 1_1:+5776340 Msa0003270:CDS
CACGGTCAGAAGGGGACTGT+TGG 0.562916 1_1:+5782069 Msa0003270:CDS
TCTGTTCGAATACCACAGAT+TGG 0.563843 1_1:+5782027 Msa0003270:CDS
AAAGTTGACTAGAGATGTCA+GGG 0.564452 1_1:+5778014 Msa0003270:CDS
GTGGATTGACAATAATATCA+GGG 0.564760 1_1:-5782140 None:intergenic
TACTTCTGTGCGCACTTGGG+CGG 0.565950 1_1:+5777803 Msa0003270:CDS
TATTCATTGTGGATAAACAA+AGG 0.566213 1_1:+5780205 Msa0003270:CDS
TTTGAGTAAGCCAATGATGA+CGG 0.566626 1_1:+5775245 Msa0003270:CDS
AGGTCTTCGATTTGGAGAGA+TGG 0.567077 1_1:+5782925 Msa0003270:CDS
ATTCATTCAGAACACGATGC+AGG 0.568875 1_1:+5774158 Msa0003270:CDS
CCTAATCTGCAGGTATGCTA+AGG 0.570029 1_1:+5777616 Msa0003270:intron
CTCTTCCTGAGATAGAGGAG+TGG 0.573182 1_1:-5781668 None:intergenic
ATACACAAGAAGACATGCCC+TGG 0.575210 1_1:+5782100 Msa0003270:CDS
TCATTATGGAAATAAGAGGC+TGG 0.580811 1_1:+5777846 Msa0003270:CDS
CGAGTGTATCATGGGGAAGG+TGG 0.580823 1_1:+5782200 Msa0003270:CDS
TCACTTGCTACTGGTAATTG+GGG 0.581100 1_1:+5778206 Msa0003270:CDS
GAGGGGCGGTCACGTGATGG+AGG 0.582017 1_1:+5782905 Msa0003270:CDS
GTTCTGAATGAATTCATCAA+AGG 0.582724 1_1:-5774148 None:intergenic
CGCCAAGTAAAGGACCTGCC+AGG 0.582885 1_1:-5777870 None:intergenic
AGTAGTAGACACGGTCAGAA+GGG 0.585599 1_1:+5782060 Msa0003270:CDS
ATGCGCACAAACATAGTGCT+AGG 0.586320 1_1:-5776383 None:intergenic
GAGGTAGTGATGAGGCTACT+GGG 0.588391 1_1:-5783605 None:intergenic
GCAAAGCTTTACACAAATGT+GGG 0.589460 1_1:+5782714 Msa0003270:CDS
GTACTTAAGTCCACTTGTGA+TGG 0.591849 1_1:-5778183 None:intergenic
ATCCACAGCGTTCACACACG+TGG 0.592592 1_1:-5783027 None:intergenic
TTCAACCTTTGGTAATAGGT+AGG 0.593041 1_1:-5782812 None:intergenic
TTGGGCCTACCTATTACCAA+AGG 0.594097 1_1:+5782807 Msa0003270:CDS
ATATGCGCAGTTCTTTAAGA+CGG 0.594553 1_1:-5780152 None:intergenic
CAGGAATCCCCGGAAGATGG+TGG 0.596838 1_1:+5780351 Msa0003270:intron
TCCACAGATATATCATTCAC+CGG 0.598759 1_1:+5777779 Msa0003270:intron
GACAGCTGCATAATTCACAA+TGG 0.600518 1_1:+5778982 Msa0003270:CDS
ACAATGGGGAATGATGTGTC+CGG 0.600917 1_1:+5778998 Msa0003270:CDS
CTTACAAGGCAACCTGCTGA+GGG 0.601495 1_1:+5782887 Msa0003270:CDS
AAGGAGATGCTTCCCCATGT+TGG 0.602787 1_1:+5777650 Msa0003270:CDS
ACTGCTTCCTCTCGTGAACG+TGG 0.603906 1_1:+5783396 Msa0003270:three_prime_UTR
TGACCAATTGTCATTCGAGA+AGG 0.604159 1_1:-5782171 None:intergenic
GAAAGGGCATGATGGTGAAG+AGG 0.604192 1_1:+5775371 Msa0003270:CDS
ATGTCCTAACCAACATATCA+GGG 0.604790 1_1:-5779407 None:intergenic
AGAATATATCGACACAGAAG+AGG 0.605449 1_1:+5780404 Msa0003270:CDS
ATTGGGGTTTGTCGCCGACA+AGG 0.606610 1_1:+5776631 Msa0003270:CDS
TTAGAAACATCAACATACAA+AGG 0.606950 1_1:-5775336 None:intergenic
AGTCAACATGGAATAAAGAC+TGG 0.607208 1_1:-5783376 None:intergenic
TGGCATGATCTTGTGTCCAA+GGG 0.607611 1_1:+5780375 Msa0003270:CDS
CCAATGATGACGGAATCTGA+TGG 0.608626 1_1:+5775255 Msa0003270:CDS
ACGAGAGGAAGCAGTCAACA+TGG 0.608706 1_1:-5783388 None:intergenic
GCGGAGGGCTGAAGATGATA+GGG 0.609839 1_1:+5777822 Msa0003270:CDS
TGATGTTAATACTGAAGTTG+GGG 0.611461 1_1:+5780116 Msa0003270:CDS
CTGAATTTGTCACCAATCTG+TGG 0.613238 1_1:-5782039 None:intergenic
AATCCCCGGAAGATGGTGGA+TGG 0.615234 1_1:+5780355 Msa0003270:CDS
ACAAATGCTTCTTCCAGGGA+AGG 0.617068 1_1:-5776713 None:intergenic
TATCGAGTGTATCATGGGGA+AGG 0.618510 1_1:+5782197 Msa0003270:CDS
GTAGTGACCAGTGGCTTCTG+AGG 0.619018 1_1:-5780983 None:intergenic
ATAATATAAAACATACGCCA+AGG 0.620175 1_1:-5780960 None:intergenic
TGCCTTGTAAGAATCTGCAC+AGG 0.620516 1_1:-5782875 None:intergenic
GTGGTCAGGAAATGGTATGA+TGG 0.622245 1_1:-5780667 None:intergenic
TCTTTCCTTTAGGAAGTGAG+CGG 0.624165 1_1:-5782975 None:intergenic
GTAGTAGACACGGTCAGAAG+GGG 0.624190 1_1:+5782061 Msa0003270:CDS
GGGTCGAATTTCGATATCAG+CGG 0.625955 1_1:-5774196 None:intergenic
TGTTGACCACAAATGCTGAT+GGG 0.626117 1_1:+5781977 Msa0003270:CDS
GGCCTGTGCAGATTCTTACA+AGG 0.626814 1_1:+5782873 Msa0003270:CDS
AATTCTCCTATAGGACGTGA+AGG 0.626912 1_1:+5778419 Msa0003270:CDS
ATAACATGAAATGGCCACAA+TGG 0.627397 1_1:-5781141 None:intergenic
ACTATATCAGAATTCAGAGA+AGG 0.627949 1_1:+5776172 Msa0003270:CDS
CATACACCCAAAATCAGTGA+TGG 0.628250 1_1:-5780639 None:intergenic
ATTCGAGAAGGTATAGCATG+TGG 0.628340 1_1:-5782159 None:intergenic
ATCAACTGTAGGTGTAACCA+AGG 0.629048 1_1:+5777506 Msa0003270:CDS
ACTGGTCACTACGAGAGCCA+TGG 0.630859 1_1:+5780994 Msa0003270:CDS
ATGGCTCTCGTAGTGACCAG+TGG 0.632635 1_1:-5780992 None:intergenic
TACCAACTACCAGTTTCGAA+TGG 0.633775 1_1:+5780841 Msa0003270:CDS
AGCAAACAGACCTATATGAA+CGG 0.634285 1_1:-5781241 None:intergenic
CCTAACAAGTATGCTTATGT+GGG 0.634295 1_1:+5776323 Msa0003270:CDS
GTGATGCCTTCTACAGTCCA+GGG 0.636479 1_1:-5782117 None:intergenic
CAAGGCAACCTGCTGAGGGG+CGG 0.636674 1_1:+5782891 Msa0003270:CDS
GTTGAGATTCGTGAAAGTAA+GGG 0.638402 1_1:+5781999 Msa0003270:CDS
CGAATTCGATCAGCAAATGG+AGG 0.639060 1_1:+5774029 Msa0003270:CDS
CTCTCGGGCTAGTGCCAAAG+GGG 0.643628 1_1:+5776409 Msa0003270:CDS
TATGTAGGAAATTTCTCCTG+CGG 0.653804 1_1:+5779326 Msa0003270:intron
CAGATGCGATATAGGAAGCG+AGG 0.657139 1_1:-5783624 None:intergenic
CTATCTCAGGAAGAGCAACA+AGG 0.657616 1_1:+5781676 Msa0003270:CDS
CAAGTGCGCACAGAAGTAGC+CGG 0.657947 1_1:-5777798 None:intergenic
CAAAATTTACAATTCCAGCA+GGG 0.661317 1_1:-5781039 None:intergenic
GATGACAAGATCCATTCTCG+TGG 0.663053 1_1:+5782845 Msa0003270:CDS
ATAGAGACCGAAAGAAGCCA+CGG 0.663349 1_1:-5781214 None:intergenic
AATGGAGGAAGAAGACGATG+AGG 0.663630 1_1:+5774044 Msa0003270:CDS
GTGTGATCCACGTTCACGAG+AGG 0.663833 1_1:-5783403 None:intergenic
TAGGAAGCGAGGTAGTGATG+AGG 0.663942 1_1:-5783613 None:intergenic
GACAAATTCAGTAGTAGACA+CGG 0.664921 1_1:+5782051 Msa0003270:CDS
TTATTGTGTTTCGGGCATTG+GGG 0.667801 1_1:+5776615 Msa0003270:CDS
ATGCCATCCACCATCTTCCG+GGG 0.669278 1_1:-5780358 None:intergenic
AAATGTGGGTACCAAATGCG+TGG 0.670341 1_1:+5782728 Msa0003270:CDS
GAACGTGGATCACACACACA+TGG 0.670875 1_1:+5783411 Msa0003270:three_prime_UTR
TGTACAATGGTCATACAGGA+AGG 0.673197 1_1:+5782762 Msa0003270:CDS
TGGATTGACAATAATATCAG+GGG 0.673711 1_1:-5782139 None:intergenic
TTTGGTAATAGGTAGGCCCA+AGG 0.674216 1_1:-5782805 None:intergenic
GCAGACTGATACGTATTACG+AGG 0.679371 1_1:-5780788 None:intergenic
CAGACTGATACGTATTACGA+GGG 0.679597 1_1:-5780787 None:intergenic
TGTGCCATAGAATGCCATTG+TGG 0.679926 1_1:+5781127 Msa0003270:intron
AGATCCATTCTCGTGGACGA+GGG 0.680250 1_1:+5782852 Msa0003270:CDS
TACTCTCCAACACCAACATG+GGG 0.682957 1_1:-5777662 None:intergenic
GGGCACAAGAGTGTCTGGTG+AGG 0.687347 1_1:+5781627 Msa0003270:intron
CGCACAAACATAGTGCTAGG+TGG 0.691615 1_1:-5776380 None:intergenic
GCAGTGTGTTGATAATGGGA+AGG 0.696609 1_1:+5778127 Msa0003270:intron
CACTTGCTACTGGTAATTGG+GGG 0.696854 1_1:+5778207 Msa0003270:CDS
AGCTTATCGAGTGTATCATG+GGG 0.704452 1_1:+5782193 Msa0003270:CDS
TCATCAGTCTGATTTCGCTG+AGG 0.705532 1_1:+5774239 Msa0003270:CDS
TGTCCGGCAGAAACACCAGA+AGG 0.711936 1_1:+5779014 Msa0003270:CDS
AACCAATCATCAATAGACCG+TGG 0.713532 1_1:+5781197 Msa0003270:CDS
GCCGGATAGAGCCAACACCA+TGG 0.715047 1_1:+5781392 Msa0003270:CDS
TTACAAGGCAACCTGCTGAG+GGG 0.720916 1_1:+5782888 Msa0003270:CDS
CAGCTGCATAATTCACAATG+GGG 0.732440 1_1:+5778984 Msa0003270:CDS
AGACTGATACGTATTACGAG+GGG 0.743924 1_1:-5780786 None:intergenic
GTCCACGTGTGTGAACGCTG+TGG 0.744978 1_1:+5783025 Msa0003270:CDS
GAGTGTCCGTATGATCAAGG+AGG 0.751164 1_1:+5776212 Msa0003270:CDS
AAGTTGACTAGAGATGTCAG+GGG 0.803386 1_1:+5778015 Msa0003270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAACCTATTTTATTATTA+CGG + chr1_1:5778751-5778770 Msa0003270:intron 10.0%
!! AACTATTATTATAAGTTAAA+TGG + chr1_1:5779865-5779884 Msa0003270:intron 10.0%
!! ATTATCAATATAATAACAAA+AGG - chr1_1:5781082-5781101 None:intergenic 10.0%
!!! TATTATTAGATCTTATTTAA+TGG + chr1_1:5781820-5781839 Msa0003270:intron 10.0%
!!! ATTATTAGATCTTATTTAAT+GGG + chr1_1:5781821-5781840 Msa0003270:intron 10.0%
!!! TTTCAATTTTCAATATAACT+TGG + chr1_1:5774334-5774353 Msa0003270:intron 15.0%
!! AGTTACAGATTATAAAAAAA+GGG - chr1_1:5775137-5775156 None:intergenic 15.0%
!! TAGTTACAGATTATAAAAAA+AGG - chr1_1:5775138-5775157 None:intergenic 15.0%
!!! TTTTTATAATCTGTAACTAA+CGG + chr1_1:5775139-5775158 Msa0003270:intron 15.0%
!! TAGTTTAGTATATTAGTATT+TGG + chr1_1:5775731-5775750 Msa0003270:intron 15.0%
!!! TTTTAAGTTATTTTATGATG+TGG + chr1_1:5776049-5776068 Msa0003270:intron 15.0%
!!! TTGTTATTATTCTACTTATT+TGG + chr1_1:5777924-5777943 Msa0003270:intron 15.0%
!!! GTAACTTTGATTTTTTTAAT+TGG - chr1_1:5778600-5778619 None:intergenic 15.0%
!! AAAAAATCAAAGTTACTTAA+TGG + chr1_1:5778604-5778623 Msa0003270:intron 15.0%
!!! TTATTATTTTTTGAGCAATT+TGG - chr1_1:5778645-5778664 None:intergenic 15.0%
!! AATAACCGTAATAATAAAAT+AGG - chr1_1:5778759-5778778 None:intergenic 15.0%
!! TATATAACAAGTAGTAATAT+AGG - chr1_1:5779068-5779087 None:intergenic 15.0%
!!! ACAAATTATTACTTTTATGA+AGG - chr1_1:5779263-5779282 None:intergenic 15.0%
!! TATTAAGTATTCTATATTTC+TGG + chr1_1:5779741-5779760 Msa0003270:intron 15.0%
!!! TATCATATTACATTTTTAAG+AGG + chr1_1:5780007-5780026 Msa0003270:intron 15.0%
!! TAAATAATTTCAAACAATGA+TGG - chr1_1:5780036-5780055 None:intergenic 15.0%
!!! TTATTAGATCTTATTTAATG+GGG + chr1_1:5781822-5781841 Msa0003270:intron 15.0%
!! TATTGTTCATTGTATTTATA+CGG - chr1_1:5783776-5783795 None:intergenic 15.0%
!!! TAATGAGTTAATAGTTTTTT+TGG + chr1_1:5783840-5783859 Msa0003270:three_prime_UTR 15.0%
!! TTCAATTAGATGATTAAATC+TGG + chr1_1:5774297-5774316 Msa0003270:intron 20.0%
!! TTGGATACTTCAAAAAAATA+TGG + chr1_1:5774441-5774460 Msa0003270:intron 20.0%
!!! TTTTGAAAATCTGTAACTAA+AGG + chr1_1:5774921-5774940 Msa0003270:intron 20.0%
!! TCAATGAAATAATCACTTAT+AGG - chr1_1:5774956-5774975 None:intergenic 20.0%
!!! TTCTTTAGAAAATCATTTTG+TGG + chr1_1:5775027-5775046 Msa0003270:intron 20.0%
!!! TTTTATAATCTGTAACTAAC+GGG + chr1_1:5775140-5775159 Msa0003270:intron 20.0%
!!! TGTTGATGTTAATATGATTT+TGG + chr1_1:5775178-5775197 Msa0003270:intron 20.0%
!! TAAACTACAACTATAACAAT+TGG - chr1_1:5775718-5775737 None:intergenic 20.0%
!! TAACAACAAAACCATTATTT+AGG - chr1_1:5776116-5776135 None:intergenic 20.0%
!!! ATAATGGTTTTGTTGTTATT+AGG + chr1_1:5776118-5776137 Msa0003270:intron 20.0%
!! TATTATTTATACTCGAATGA+AGG + chr1_1:5776909-5776928 Msa0003270:intron 20.0%
!!! AGAGATCTTTTAAACTTATT+AGG + chr1_1:5777094-5777113 Msa0003270:intron 20.0%
!!! GAGATCTTTTAAACTTATTA+GGG + chr1_1:5777095-5777114 Msa0003270:intron 20.0%
!! AGAATTTAAATTAGTACATG+TGG - chr1_1:5777230-5777249 None:intergenic 20.0%
!!! ACTAAAAAAGCATACTATTT+TGG + chr1_1:5777692-5777711 Msa0003270:CDS 20.0%
!!! CTAAAAAAGCATACTATTTT+GGG + chr1_1:5777693-5777712 Msa0003270:CDS 20.0%
!!! GATTTTTTTAATTGGTAAAC+CGG - chr1_1:5778592-5778611 None:intergenic 20.0%
!! ATTGCTCAAAAAATAATAAC+CGG + chr1_1:5778646-5778665 Msa0003270:intron 20.0%
!!! AATTTCTAGTAATGTAATAC+CGG - chr1_1:5778668-5778687 None:intergenic 20.0%
!! TTTACAATATCAATTCAATC+TGG + chr1_1:5778779-5778798 Msa0003270:intron 20.0%
!!! CCTTATTAAGATAATCTTTT+GGG + chr1_1:5779810-5779829 Msa0003270:intron 20.0%
!! TGCATTTATGTACTAATAAA+GGG - chr1_1:5780498-5780517 None:intergenic 20.0%
!! TTGCATTTATGTACTAATAA+AGG - chr1_1:5780499-5780518 None:intergenic 20.0%
!! TGATTATGAATGTATTTAAC+AGG + chr1_1:5780548-5780567 Msa0003270:intron 20.0%
!!! CAAAAGGATTTTAATAAAGA+AGG - chr1_1:5781066-5781085 None:intergenic 20.0%
!!! AGTGAATTTTCAATTAATTC+GGG - chr1_1:5781268-5781287 None:intergenic 20.0%
!!! CAGTGAATTTTCAATTAATT+CGG - chr1_1:5781269-5781288 None:intergenic 20.0%
!!! TTACATATTTCCTATTTTGT+AGG + chr1_1:5781951-5781970 Msa0003270:intron 20.0%
!! AACAACATACAAAATACAAT+AGG - chr1_1:5782372-5782391 None:intergenic 20.0%
!! TACCTATTTAGAAAATATCA+TGG + chr1_1:5782604-5782623 Msa0003270:intron 20.0%
!!! TACCATGATATTTTCTAAAT+AGG - chr1_1:5782609-5782628 None:intergenic 20.0%
!! AAAAATCCTTGACATATAAA+TGG - chr1_1:5783544-5783563 None:intergenic 20.0%
!!! TTGTACTAAAAAAGTATATC+CGG - chr1_1:5783753-5783772 None:intergenic 20.0%
!! AATACAATGAACAATACATA+TGG + chr1_1:5783780-5783799 Msa0003270:three_prime_UTR 20.0%
!!! TATTAACTCATTATTTTGCA+TGG - chr1_1:5783833-5783852 None:intergenic 20.0%
! AATTCGAAGTTCAAATTATG+CGG - chr1_1:5773975-5773994 None:intergenic 25.0%
! GAATTTGAACAAAATGATGA+TGG + chr1_1:5773990-5774009 Msa0003270:exon 25.0%
!!! TCTGCTTATTTTGAAGAAAA+AGG + chr1_1:5774102-5774121 Msa0003270:CDS 25.0%
!!! TTACAATGAGAAGTGTTTTT+AGG + chr1_1:5774386-5774405 Msa0003270:intron 25.0%
!!! TACAATGAGAAGTGTTTTTA+GGG + chr1_1:5774387-5774406 Msa0003270:intron 25.0%
!!! TTTTTAGGGTTTGTTTGTTA+CGG + chr1_1:5774401-5774420 Msa0003270:intron 25.0%
! GGATTGTAAAATAAGTGATT+TGG + chr1_1:5774422-5774441 Msa0003270:intron 25.0%
! GATACTTCAAAAAAATATGG+CGG + chr1_1:5774444-5774463 Msa0003270:intron 25.0%
!! AAAATATGGCGGTTAATTTT+TGG + chr1_1:5774455-5774474 Msa0003270:intron 25.0%
!!! TTTTGAAGTGATTTTCATTC+TGG - chr1_1:5774530-5774549 None:intergenic 25.0%
! AAGATACTAAGTGTTATGTT+AGG + chr1_1:5774575-5774594 Msa0003270:intron 25.0%
!!! AATTTTGACCCATTTAAAAG+TGG - chr1_1:5774603-5774622 None:intergenic 25.0%
!!! TGGTGACAATAATTGATTTT+GGG - chr1_1:5774839-5774858 None:intergenic 25.0%
! ACGATTTATAAGATAAGCTT+CGG + chr1_1:5775213-5775232 Msa0003270:intron 25.0%
! TTAGAAACATCAACATACAA+AGG - chr1_1:5775339-5775358 None:intergenic 25.0%
! TAAGCATGTATCTTAGAATT+CGG - chr1_1:5775668-5775687 None:intergenic 25.0%
!!! TTCTAAGATACATGCTTAAA+AGG + chr1_1:5775670-5775689 Msa0003270:intron 25.0%
!! TCTAAGATACATGCTTAAAA+GGG + chr1_1:5775671-5775690 Msa0003270:intron 25.0%
! AACTGAAAAAGACTTCTTAT+AGG - chr1_1:5775784-5775803 None:intergenic 25.0%
! ATAAGCTTAAGCTTCTATTT+AGG + chr1_1:5775819-5775838 Msa0003270:intron 25.0%
! AGTAAACTGAAAATGACAAA+AGG - chr1_1:5775846-5775865 None:intergenic 25.0%
! TGTTACTGAATAAATGTGTT+AGG + chr1_1:5775935-5775954 Msa0003270:intron 25.0%
! GTTACTGAATAAATGTGTTA+GGG + chr1_1:5775936-5775955 Msa0003270:intron 25.0%
! ATGTTATTCTAACTTGAAGA+AGG - chr1_1:5775962-5775981 None:intergenic 25.0%
!!! TAAGTTATTTTATGATGTGG+TGG + chr1_1:5776052-5776071 Msa0003270:intron 25.0%
!! GGAGGTTATTTCATTATTAA+TGG + chr1_1:5776230-5776249 Msa0003270:CDS 25.0%
! TTCCTATCATTATTGTGTTT+CGG + chr1_1:5776606-5776625 Msa0003270:CDS 25.0%
! ATTTGTGATACAAAATCAAC+AGG + chr1_1:5776730-5776749 Msa0003270:CDS 25.0%
!!! TTTTTTGCTTACAGTCAAAA+TGG + chr1_1:5776775-5776794 Msa0003270:intron 25.0%
!! TGAACAGTCTGAAATATATT+TGG - chr1_1:5776856-5776875 None:intergenic 25.0%
! CAAAATCATATGACACAATA+TGG - chr1_1:5777308-5777327 None:intergenic 25.0%
! TTGAATCATCTAAGCTTATA+TGG - chr1_1:5777348-5777367 None:intergenic 25.0%
! AAAATCAAAACCGTTCTTTA+GGG + chr1_1:5777366-5777385 Msa0003270:intron 25.0%
!! TGAAGTATCAAGAAAATTGT+GGG - chr1_1:5777410-5777429 None:intergenic 25.0%
!! TTGAAGTATCAAGAAAATTG+TGG - chr1_1:5777411-5777430 None:intergenic 25.0%
! TTATTTATCAATTTCACTCC+AGG + chr1_1:5777455-5777474 Msa0003270:intron 25.0%
! CTTGATTATATTGGAAAAAG+AGG + chr1_1:5777483-5777502 Msa0003270:CDS 25.0%
! ATACTTGAAATTCAAGTAAC+AGG - chr1_1:5777739-5777758 None:intergenic 25.0%
!!! ACTTATTTGGTCTTGTTATT+TGG + chr1_1:5777937-5777956 Msa0003270:intron 25.0%
!! TCTTTCTATTTCTTAATTCC+TGG + chr1_1:5777962-5777981 Msa0003270:intron 25.0%
! ATTATGAATAAATTGGCACT+AGG + chr1_1:5778521-5778540 Msa0003270:intron 25.0%
! TTATGAATAAATTGGCACTA+GGG + chr1_1:5778522-5778541 Msa0003270:intron 25.0%
!!! CAAAACCATTTTTTACAAAC+CGG + chr1_1:5778570-5778589 Msa0003270:intron 25.0%
! GGTATTACATTACTAGAAAT+TGG + chr1_1:5778667-5778686 Msa0003270:intron 25.0%
! ACTAGAAATTGGTTATAACT+AGG + chr1_1:5778678-5778697 Msa0003270:intron 25.0%
! CTAGAAATTGGTTATAACTA+GGG + chr1_1:5778679-5778698 Msa0003270:intron 25.0%
! TAGAAATTGGTTATAACTAG+GGG + chr1_1:5778680-5778699 Msa0003270:intron 25.0%
! TTGATACAATCAATGGAATA+TGG + chr1_1:5778852-5778871 Msa0003270:intron 25.0%
!!! TGTCTAAGTTGTATTTTTGT+TGG + chr1_1:5778922-5778941 Msa0003270:intron 25.0%
!! TTTTACTATTTCAGGAAAGT+TGG + chr1_1:5778950-5778969 Msa0003270:intron 25.0%
!! AATTTGTTTCTTTCTGTGTA+TGG + chr1_1:5779276-5779295 Msa0003270:intron 25.0%
!! TACGAAAATTTTTGTAGCTT+GGG - chr1_1:5779358-5779377 None:intergenic 25.0%
!! TTACGAAAATTTTTGTAGCT+TGG - chr1_1:5779359-5779378 None:intergenic 25.0%
!! GCTACAAAAATTTTCGTAAA+TGG + chr1_1:5779360-5779379 Msa0003270:CDS 25.0%
!! ATGTCGTTCTTTTATAAGAA+GGG - chr1_1:5779603-5779622 None:intergenic 25.0%
! TTCTTATAAAAGAACGACAT+GGG + chr1_1:5779603-5779622 Msa0003270:intron 25.0%
!!! GCCTTATTAAGATAATCTTT+TGG + chr1_1:5779809-5779828 Msa0003270:intron 25.0%
! CCCAAAAGATTATCTTAATA+AGG - chr1_1:5779813-5779832 None:intergenic 25.0%
!! TGATAATTCTTCTACCTTTT+TGG - chr1_1:5779909-5779928 None:intergenic 25.0%
!! GCTTTTATAAAAATGAGTCT+AGG - chr1_1:5779984-5780003 None:intergenic 25.0%
! TTGATGTTAATACTGAAGTT+GGG + chr1_1:5780115-5780134 Msa0003270:CDS 25.0%
! TGTTTATCCACAATGAATAA+AGG - chr1_1:5780204-5780223 None:intergenic 25.0%
! TATTCATTGTGGATAAACAA+AGG + chr1_1:5780205-5780224 Msa0003270:CDS 25.0%
! CAGTACTATAATTCTAGATT+TGG + chr1_1:5780461-5780480 Msa0003270:intron 25.0%
!! ATCAGGTAAATATGGTATTT+TGG + chr1_1:5780691-5780710 Msa0003270:intron 25.0%
!! TCAGGTAAATATGGTATTTT+GGG + chr1_1:5780692-5780711 Msa0003270:intron 25.0%
! ATAATATAAAACATACGCCA+AGG - chr1_1:5780963-5780982 None:intergenic 25.0%
! ATAACCAGAATAACATGAAA+TGG - chr1_1:5781153-5781172 None:intergenic 25.0%
!! GTGAATTTTCAATTAATTCG+GGG - chr1_1:5781267-5781286 None:intergenic 25.0%
! AGAGATGAAGAGAAAAAAAT+GGG + chr1_1:5781342-5781361 Msa0003270:intron 25.0%
!!! TATAAAAAGTGTTGTTTTGC+AGG + chr1_1:5781464-5781483 Msa0003270:intron 25.0%
!!! ATAAAAAGTGTTGTTTTGCA+GGG + chr1_1:5781465-5781484 Msa0003270:intron 25.0%
! TATGATAAATTGGATGATGA+TGG + chr1_1:5781504-5781523 Msa0003270:CDS 25.0%
! CAATTTATCACTATGAAACA+GGG + chr1_1:5781607-5781626 Msa0003270:intron 25.0%
! CATACAAAATACAATAGGTA+CGG - chr1_1:5782367-5782386 None:intergenic 25.0%
!! GTTTTGCATTTAAAAAACGT+CGG + chr1_1:5782459-5782478 Msa0003270:intron 25.0%
! ATAGCACATTGTTAAACTTT+GGG - chr1_1:5782485-5782504 None:intergenic 25.0%
! AATAGCACATTGTTAAACTT+TGG - chr1_1:5782486-5782505 None:intergenic 25.0%
!! ATGGTAGAATTTTTGCTTTA+TGG + chr1_1:5782623-5782642 Msa0003270:intron 25.0%
!! ATTTTAAACACAAGCTAGAA+AGG - chr1_1:5782655-5782674 None:intergenic 25.0%
! ATAAAAGACCAAAAGAAGAA+AGG + chr1_1:5783324-5783343 Msa0003270:CDS 25.0%
!! GTTTATTTCTTGAACTAGAA+AGG - chr1_1:5783567-5783586 None:intergenic 25.0%
! ATATTGATCGAAAAATTAGC+TGG + chr1_1:5783668-5783687 Msa0003270:three_prime_UTR 25.0%
! TATTGATCGAAAAATTAGCT+GGG + chr1_1:5783669-5783688 Msa0003270:three_prime_UTR 25.0%
!!! TAATAGTTTTTTTGGTCGAA+TGG + chr1_1:5783848-5783867 Msa0003270:three_prime_UTR 25.0%
!! AGTGATTTGATTTTCGAAAG+AGG - chr1_1:5773875-5773894 None:intergenic 30.0%
! GTTCTGAATGAATTCATCAA+AGG - chr1_1:5774151-5774170 None:intergenic 30.0%
!! TGTTAGGTTCCACTTTTAAA+TGG + chr1_1:5774591-5774610 Msa0003270:intron 30.0%
!! GTTAGGTTCCACTTTTAAAT+GGG + chr1_1:5774592-5774611 Msa0003270:intron 30.0%
! AAATGGGTCAAAATTGATTC+TGG + chr1_1:5774608-5774627 Msa0003270:intron 30.0%
AATTCACTCTACTTGAAGTT+AGG + chr1_1:5774674-5774693 Msa0003270:intron 30.0%
! GTGAGTTGAACTATCAATTT+GGG - chr1_1:5774735-5774754 None:intergenic 30.0%
! AGTGAGTTGAACTATCAATT+TGG - chr1_1:5774736-5774755 None:intergenic 30.0%
! AAGGTAAAGTGATTTGTGTT+TGG - chr1_1:5774774-5774793 None:intergenic 30.0%
!! GTGGTGACAATAATTGATTT+TGG - chr1_1:5774840-5774859 None:intergenic 30.0%
TTAGTGTATGTTTGGTTATG+TGG - chr1_1:5774859-5774878 None:intergenic 30.0%
!!! AGCAGTTTTTAGTGTATGTT+TGG - chr1_1:5774867-5774886 None:intergenic 30.0%
TACACTAAAAACTGCTTCAA+AGG + chr1_1:5774871-5774890 Msa0003270:intron 30.0%
TTAACATCAACATCACATTC+AGG - chr1_1:5775170-5775189 None:intergenic 30.0%
! TGTATGTTGATGTTTCTAAG+AGG + chr1_1:5775340-5775359 Msa0003270:CDS 30.0%
! GTATGTTGATGTTTCTAAGA+GGG + chr1_1:5775341-5775360 Msa0003270:CDS 30.0%
! GATTTCACCAAAGTTTTCAT+TGG + chr1_1:5775408-5775427 Msa0003270:intron 30.0%
AATACTAGAATTGAGAGGAA+GGG - chr1_1:5775442-5775461 None:intergenic 30.0%
TGTAGAATACTAGAATTGAG+AGG - chr1_1:5775447-5775466 None:intergenic 30.0%
TACAGATTCTGATTTCATTG+CGG + chr1_1:5775463-5775482 Msa0003270:intron 30.0%
! TACATGCTTAAAAGGGTTTT+TGG + chr1_1:5775678-5775697 Msa0003270:intron 30.0%
TAGAAGCTTAAGCTTATCAT+TGG - chr1_1:5775816-5775835 None:intergenic 30.0%
AACACCACAAACAACAAAAA+AGG - chr1_1:5775891-5775910 None:intergenic 30.0%
! ATGTGGTGGTGAAATATAAT+TGG + chr1_1:5776066-5776085 Msa0003270:intron 30.0%
GTGGTGAAATATAATTGGAT+CGG + chr1_1:5776071-5776090 Msa0003270:intron 30.0%
! AACCATTATTTAGGTTACTC+AGG - chr1_1:5776107-5776126 None:intergenic 30.0%
ATTAGGTTCCTATTATGCTT+CGG + chr1_1:5776135-5776154 Msa0003270:intron 30.0%
ACTATATCAGAATTCAGAGA+AGG + chr1_1:5776172-5776191 Msa0003270:CDS 30.0%
AAATAACCTCCTTGATCATA+CGG - chr1_1:5776221-5776240 None:intergenic 30.0%
CTTAAAGACATAGACATGAT+TGG - chr1_1:5776294-5776313 None:intergenic 30.0%
! ATGTCTATGTCTTTAAGAAG+AGG + chr1_1:5776297-5776316 Msa0003270:CDS 30.0%
! TATGCATTTTTATTCCTACC+AGG + chr1_1:5776532-5776551 Msa0003270:intron 30.0%
! ATGCATTTTTATTCCTACCA+GGG + chr1_1:5776533-5776552 Msa0003270:intron 30.0%
TCCTATCATTATTGTGTTTC+GGG + chr1_1:5776607-5776626 Msa0003270:CDS 30.0%
AGTCATAGCATATATGTTCA+AGG - chr1_1:5776661-5776680 None:intergenic 30.0%
ACATATATGCTATGACTTTG+CGG + chr1_1:5776664-5776683 Msa0003270:CDS 30.0%
AACAGCTCTTATAAGGTTAT+AGG + chr1_1:5777001-5777020 Msa0003270:intron 30.0%
! CTTTTGCACAAGTACTTATA+GGG - chr1_1:5777173-5777192 None:intergenic 30.0%
! TCTTTTGCACAAGTACTTAT+AGG - chr1_1:5777174-5777193 None:intergenic 30.0%
CAAAATCAAAACCGTTCTTT+AGG + chr1_1:5777365-5777384 Msa0003270:intron 30.0%
TGCAATATTTCCCTAAAGAA+CGG - chr1_1:5777379-5777398 None:intergenic 30.0%
ACTTCAATGTCTTCTGTATA+TGG + chr1_1:5777424-5777443 Msa0003270:intron 30.0%
! TCACTTAATTCTCTTTTCCT+TGG - chr1_1:5777526-5777545 None:intergenic 30.0%
TGTAACAGTTGCTTCATAAT+GGG - chr1_1:5777589-5777608 None:intergenic 30.0%
ATAGCTGCATCACAAATTAT+AGG - chr1_1:5777990-5778009 None:intergenic 30.0%
! TCTGTCTTCTAAAGATGAAA+TGG + chr1_1:5778308-5778327 Msa0003270:intron 30.0%
TATGAATAAATTGGCACTAG+GGG + chr1_1:5778523-5778542 Msa0003270:intron 30.0%
! CGGTTTGTAAAAAATGGTTT+TGG - chr1_1:5778572-5778591 None:intergenic 30.0%
!! GTAAACCGGTTTGTAAAAAA+TGG - chr1_1:5778578-5778597 None:intergenic 30.0%
!!! TTTTTTGAGCAATTTGGTTG+TGG - chr1_1:5778639-5778658 None:intergenic 30.0%
! AATTCAATCTGGTTCAAAAC+CGG + chr1_1:5778790-5778809 Msa0003270:intron 30.0%
! TCCATTGATTGTATCAACTA+CGG - chr1_1:5778849-5778868 None:intergenic 30.0%
GGAATATGGTAATATGTTCT+CGG + chr1_1:5778866-5778885 Msa0003270:intron 30.0%
!! ATGTTCTCGGTTATTTCTTT+AGG + chr1_1:5778879-5778898 Msa0003270:intron 30.0%
! TGGTTCTCTTTTACTATTTC+AGG + chr1_1:5778942-5778961 Msa0003270:intron 30.0%
ATAATGAACTCATCTTTCTC+TGG + chr1_1:5779085-5779104 Msa0003270:intron 30.0%
TCATCTTTCTCTGGTATTTA+TGG + chr1_1:5779094-5779113 Msa0003270:intron 30.0%
TGGTATTTATGGACGTTATT+GGG + chr1_1:5779105-5779124 Msa0003270:intron 30.0%
ACGTTATTGGGCTATTATTT+AGG + chr1_1:5779117-5779136 Msa0003270:intron 30.0%
! TTGATGGTATACATTACAGT+TGG + chr1_1:5779166-5779185 Msa0003270:CDS 30.0%
! TCTTCTAAAAACTCCAGAAT+AGG - chr1_1:5779205-5779224 None:intergenic 30.0%
!!! TTCTGGAGTTTTTAGAAGAA+TGG + chr1_1:5779206-5779225 Msa0003270:CDS 30.0%
!! TCTGGAGTTTTTAGAAGAAT+GGG + chr1_1:5779207-5779226 Msa0003270:CDS 30.0%
! TCCTACATAGTGGAAAAAAA+AGG - chr1_1:5779315-5779334 None:intergenic 30.0%
! ACGAAAATTTTTGTAGCTTG+GGG - chr1_1:5779357-5779376 None:intergenic 30.0%
! AAATTTTCGTAAATGGTTGC+TGG + chr1_1:5779367-5779386 Msa0003270:CDS 30.0%
! TGATTTTGTCTTGAGTCTTT+TGG + chr1_1:5779472-5779491 Msa0003270:intron 30.0%
! AGTTTCAAAGACAGCTTTTT+AGG - chr1_1:5779501-5779520 None:intergenic 30.0%
AGTGTAGTAGATACAATCAT+TGG + chr1_1:5779549-5779568 Msa0003270:intron 30.0%
! CATGTCGTTCTTTTATAAGA+AGG - chr1_1:5779604-5779623 None:intergenic 30.0%
CTTCTTATAAAAGAACGACA+TGG + chr1_1:5779602-5779621 Msa0003270:intron 30.0%
AAATACTATTGTGTGCCTTA+AGG + chr1_1:5779636-5779655 Msa0003270:intron 30.0%
GTAGTCTATATTACTTAGCA+AGG + chr1_1:5779787-5779806 Msa0003270:intron 30.0%
!! AATCTTTTGGGTGAGATATT+TGG + chr1_1:5779822-5779841 Msa0003270:intron 30.0%
ATTTGGAGAGAATTCTTGTA+TGG + chr1_1:5779839-5779858 Msa0003270:intron 30.0%
! ACGAGATCTTTTAACCAAAA+AGG + chr1_1:5779892-5779911 Msa0003270:intron 30.0%
! TAATCATAGTTTAGTGCTGA+TGG + chr1_1:5780075-5780094 Msa0003270:intron 30.0%
GTTGATGTTAATACTGAAGT+TGG + chr1_1:5780114-5780133 Msa0003270:CDS 30.0%
TGATGTTAATACTGAAGTTG+GGG + chr1_1:5780116-5780135 Msa0003270:CDS 30.0%
!! ACTTGTTTTTCCATTTCTTC+AGG + chr1_1:5780332-5780351 Msa0003270:intron 30.0%
GATATATTCTATAAAGCCCT+TGG - chr1_1:5780394-5780413 None:intergenic 30.0%
!! AGTACTGACATTAATTGTCA+TGG - chr1_1:5780448-5780467 None:intergenic 30.0%
ATACCATATTTACCTGATTG+TGG - chr1_1:5780689-5780708 None:intergenic 30.0%
AATCTCTATCTTCTTACCTT+TGG + chr1_1:5780750-5780769 Msa0003270:intron 30.0%
CAAAATTTACAATTCCAGCA+GGG - chr1_1:5781042-5781061 None:intergenic 30.0%
TCAAAATTTACAATTCCAGC+AGG - chr1_1:5781043-5781062 None:intergenic 30.0%
!! CTCTATTTTTCCGTTCATAT+AGG + chr1_1:5781231-5781250 Msa0003270:CDS 30.0%
CAGAGATGAAGAGAAAAAAA+TGG + chr1_1:5781341-5781360 Msa0003270:intron 30.0%
! ACTCTTGTCAAAGAAGATTT+TGG + chr1_1:5781366-5781385 Msa0003270:CDS 30.0%
!! TTGTCAAAGAAGATTTTGGT+CGG + chr1_1:5781370-5781389 Msa0003270:CDS 30.0%
ATAGCAAATCAACAACATGT+AGG - chr1_1:5781435-5781454 None:intergenic 30.0%
!! CATGTTGTTGATTTGCTATT+TGG + chr1_1:5781436-5781455 Msa0003270:intron 30.0%
GCATGGTTCTTATGATAAAT+TGG + chr1_1:5781494-5781513 Msa0003270:CDS 30.0%
TCAAAATATATGCTTACAGG+TGG - chr1_1:5781537-5781556 None:intergenic 30.0%
CTGTCAAAATATATGCTTAC+AGG - chr1_1:5781540-5781559 None:intergenic 30.0%
AACTTTCAGACATGTTATTC+AGG - chr1_1:5781566-5781585 None:intergenic 30.0%
GCAATTTATCACTATGAAAC+AGG + chr1_1:5781606-5781625 Msa0003270:intron 30.0%
ATACCAAAATCCTGAATTTC+TGG + chr1_1:5781904-5781923 Msa0003270:intron 30.0%
TGGATTGACAATAATATCAG+GGG - chr1_1:5782142-5782161 None:intergenic 30.0%
! GTGGATTGACAATAATATCA+GGG - chr1_1:5782143-5782162 None:intergenic 30.0%
! TGTGGATTGACAATAATATC+AGG - chr1_1:5782144-5782163 None:intergenic 30.0%
CTTACAGTAACATCTGTAAA+AGG - chr1_1:5782258-5782277 None:intergenic 30.0%
AAAACAATTTCCTTGTGTAC+TGG - chr1_1:5782444-5782463 None:intergenic 30.0%
! ATTGTTTTCTACTGTAATCC+AGG + chr1_1:5782679-5782698 Msa0003270:intron 30.0%
!! AGAAGAATTCTTTTGAGTGT+AGG + chr1_1:5783071-5783090 Msa0003270:CDS 30.0%
!! GAAGAATTCTTTTGAGTGTA+GGG + chr1_1:5783072-5783091 Msa0003270:CDS 30.0%
!! AAGAATTCTTTTGAGTGTAG+GGG + chr1_1:5783073-5783092 Msa0003270:CDS 30.0%
! AGATTCTTAGTTTCTCGTTT+TGG + chr1_1:5783192-5783211 Msa0003270:intron 30.0%
! GAAATGACATTCCTTTTGTT+GGG + chr1_1:5783508-5783527 Msa0003270:three_prime_UTR 30.0%
GACATTCCATTTATATGTCA+AGG + chr1_1:5783535-5783554 Msa0003270:three_prime_UTR 30.0%
!!! TATGGTGTCTTTGTTTTGTA+TGG + chr1_1:5783798-5783817 Msa0003270:three_prime_UTR 30.0%
!!! ATGGTGTCTTTGTTTTGTAT+GGG + chr1_1:5783799-5783818 Msa0003270:three_prime_UTR 30.0%
!!! AATCACTTTTTCTCTCTGCT+AGG + chr1_1:5773888-5773907 Msa0003270:five_prime_UTR 35.0%
!!! ATCACTTTTTCTCTCTGCTA+GGG + chr1_1:5773889-5773908 Msa0003270:five_prime_UTR 35.0%
AAACGAATTCGATCAGCAAA+TGG + chr1_1:5774026-5774045 Msa0003270:CDS 35.0%
!! ACCTTCAACTCACTTTTAGT+TGG + chr1_1:5774789-5774808 Msa0003270:intron 35.0%
! TCCAACTAAAAGTGAGTTGA+AGG - chr1_1:5774793-5774812 None:intergenic 35.0%
TTTGAGTAAGCCAATGATGA+CGG + chr1_1:5775245-5775264 Msa0003270:CDS 35.0%
TCTAAGAGGGTCATTAAGAA+AGG + chr1_1:5775354-5775373 Msa0003270:CDS 35.0%
CTAAGAGGGTCATTAAGAAA+GGG + chr1_1:5775355-5775374 Msa0003270:CDS 35.0%
TACCTTGCCAATGAAAACTT+TGG - chr1_1:5775418-5775437 None:intergenic 35.0%
ATACTAGAATTGAGAGGAAG+GGG - chr1_1:5775441-5775460 None:intergenic 35.0%
GAATACTAGAATTGAGAGGA+AGG - chr1_1:5775443-5775462 None:intergenic 35.0%
AAACTTCCTAAACACTACAC+AGG - chr1_1:5775594-5775613 None:intergenic 35.0%
TGTGTAGTGTTTAGGAAGTT+TGG + chr1_1:5775593-5775612 Msa0003270:intron 35.0%
GTGTAGTGTTTAGGAAGTTT+GGG + chr1_1:5775594-5775613 Msa0003270:intron 35.0%
!!! TGGTTTTGTAAGGTTGAGTT+AGG + chr1_1:5775636-5775655 Msa0003270:intron 35.0%
!!! TAGGCCTTTTTTGTTGTTTG+TGG + chr1_1:5775884-5775903 Msa0003270:intron 35.0%
TAACTAGACCGAAGCATAAT+AGG - chr1_1:5776146-5776165 None:intergenic 35.0%
CATTATTAATGGCAGTGAGA+AGG + chr1_1:5776241-5776260 Msa0003270:CDS 35.0%
ACCTAACAAGTATGCTTATG+TGG + chr1_1:5776322-5776341 Msa0003270:CDS 35.0%
CCTAACAAGTATGCTTATGT+GGG + chr1_1:5776323-5776342 Msa0003270:CDS 35.0%
!! TTTGTGTAGTTTTTGCTGTG+TGG + chr1_1:5776461-5776480 Msa0003270:intron 35.0%
GGAATTTCAGTTCGAATGTA+AGG - chr1_1:5776590-5776609 None:intergenic 35.0%
ATTATTGTGTTTCGGGCATT+GGG + chr1_1:5776614-5776633 Msa0003270:CDS 35.0%
ATGTTCAAGGATATCCTTGT+CGG - chr1_1:5776648-5776667 None:intergenic 35.0%
TATCACAAATGCTTCTTCCA+GGG - chr1_1:5776720-5776739 None:intergenic 35.0%
GTGATACAAAATCAACAGGT+TGG + chr1_1:5776734-5776753 Msa0003270:intron 35.0%
ATTTCAGACTGTTCAGAAGA+TGG + chr1_1:5776861-5776880 Msa0003270:intron 35.0%
GCTAGAAACTAATCCAAACT+GGG - chr1_1:5776935-5776954 None:intergenic 35.0%
AGCTAGAAACTAATCCAAAC+TGG - chr1_1:5776936-5776955 None:intergenic 35.0%
! CCTTATAAGAGCTGTTTCAT+GGG - chr1_1:5776997-5777016 None:intergenic 35.0%
! ACCTTATAAGAGCTGTTTCA+TGG - chr1_1:5776998-5777017 None:intergenic 35.0%
ATAGGCGTTTGTGAAGTTAA+AGG + chr1_1:5777019-5777038 Msa0003270:intron 35.0%
! CGTTTGTGTAGAAGCTTTAT+AGG + chr1_1:5777049-5777068 Msa0003270:intron 35.0%
TGTTGCAATAACCATCTGTA+TGG - chr1_1:5777134-5777153 None:intergenic 35.0%
TAGGGAAATATTGCACTCTT+TGG + chr1_1:5777384-5777403 Msa0003270:intron 35.0%
CAATATAATCAAGTGCAACC+TGG - chr1_1:5777476-5777495 None:intergenic 35.0%
CAGGTTGCACTTGATTATAT+TGG + chr1_1:5777474-5777493 Msa0003270:intron 35.0%
GTGTAACAGTTGCTTCATAA+TGG - chr1_1:5777590-5777609 None:intergenic 35.0%
TCCACAGATATATCATTCAC+CGG + chr1_1:5777779-5777798 Msa0003270:intron 35.0%
GAAGATGATAGGGATCATTA+TGG + chr1_1:5777832-5777851 Msa0003270:CDS 35.0%
GGGATCATTATGGAAATAAG+AGG + chr1_1:5777842-5777861 Msa0003270:CDS 35.0%
TCATTATGGAAATAAGAGGC+TGG + chr1_1:5777846-5777865 Msa0003270:CDS 35.0%
CATCACAAATTATAGGAACC+AGG - chr1_1:5777983-5778002 None:intergenic 35.0%
AAAGTTGACTAGAGATGTCA+GGG + chr1_1:5778014-5778033 Msa0003270:CDS 35.0%
TTCAAGAGGTAGAAGGTTAT+AGG - chr1_1:5778103-5778122 None:intergenic 35.0%
ATAACCTTCTACCTCTTGAA+TGG + chr1_1:5778103-5778122 Msa0003270:intron 35.0%
! TTGCTTTGATAGCAAATTGC+AGG - chr1_1:5778160-5778179 None:intergenic 35.0%
AAAGCAAAAACCATCACAAG+TGG + chr1_1:5778173-5778192 Msa0003270:CDS 35.0%
CGAAGATTGAATTCTCCTAT+AGG + chr1_1:5778410-5778429 Msa0003270:CDS 35.0%
TTATGCAACAATGCACAAAG+AGG - chr1_1:5778497-5778516 None:intergenic 35.0%
GGTTCAAAACCGGTTATATT+CGG + chr1_1:5778800-5778819 Msa0003270:intron 35.0%
AAAACCGGTTATATTCGGTT+TGG + chr1_1:5778805-5778824 Msa0003270:intron 35.0%
TGAACCAAACCGAATATAAC+CGG - chr1_1:5778812-5778831 None:intergenic 35.0%
! CCATTGATTGTATCAACTAC+GGG - chr1_1:5778848-5778867 None:intergenic 35.0%
ACAGCTGCATAATTCACAAT+GGG + chr1_1:5778983-5779002 Msa0003270:CDS 35.0%
AAAATACTCACTTGTCCTTC+TGG - chr1_1:5779032-5779051 None:intergenic 35.0%
CTGGTATTTATGGACGTTAT+TGG + chr1_1:5779104-5779123 Msa0003270:intron 35.0%
!! CTGGAGTTTTTAGAAGAATG+GGG + chr1_1:5779208-5779227 Msa0003270:CDS 35.0%
!!! GCCTTTTTTTTCCACTATGT+AGG + chr1_1:5779311-5779330 Msa0003270:intron 35.0%
AGGAGAAATTTCCTACATAG+TGG - chr1_1:5779325-5779344 None:intergenic 35.0%
TATGTAGGAAATTTCTCCTG+CGG + chr1_1:5779326-5779345 Msa0003270:intron 35.0%
ATGTCCTAACCAACATATCA+GGG - chr1_1:5779410-5779429 None:intergenic 35.0%
AATGTCCTAACCAACATATC+AGG - chr1_1:5779411-5779430 None:intergenic 35.0%
!! AAAGCTGTCTTTGAAACTGT+TGG + chr1_1:5779503-5779522 Msa0003270:intron 35.0%
TTCCTTAAGCAATGTCCTTA+AGG - chr1_1:5779654-5779673 None:intergenic 35.0%
! ATATGCGCAGTTCTTTAAGA+CGG - chr1_1:5780155-5780174 None:intergenic 35.0%
CTGCGCATATATACAGATTA+TGG + chr1_1:5780165-5780184 Msa0003270:CDS 35.0%
ACATTCATTCTTTGCAGCAA+AGG + chr1_1:5780247-5780266 Msa0003270:CDS 35.0%
CATTCATTCTTTGCAGCAAA+GGG + chr1_1:5780248-5780267 Msa0003270:CDS 35.0%
AGAATATATCGACACAGAAG+AGG + chr1_1:5780404-5780423 Msa0003270:CDS 35.0%
GTATCAGAATATGCTTCTTC+TGG - chr1_1:5780597-5780616 None:intergenic 35.0%
!!! AATCCATCCATCACTGATTT+TGG + chr1_1:5780632-5780651 Msa0003270:CDS 35.0%
!!! ATCCATCCATCACTGATTTT+GGG + chr1_1:5780633-5780652 Msa0003270:CDS 35.0%
ATATTTACCTGATTGTGGTC+AGG - chr1_1:5780684-5780703 None:intergenic 35.0%
TGACCACAATCAGGTAAATA+TGG + chr1_1:5780683-5780702 Msa0003270:intron 35.0%
!! TATGGTATTTTGGGTGTATG+AGG + chr1_1:5780701-5780720 Msa0003270:intron 35.0%
!! ATGGTATTTTGGGTGTATGA+GGG + chr1_1:5780702-5780721 Msa0003270:intron 35.0%
TAATACGTATCAGTCTGCTA+TGG + chr1_1:5780793-5780812 Msa0003270:CDS 35.0%
AATACGTATCAGTCTGCTAT+GGG + chr1_1:5780794-5780813 Msa0003270:CDS 35.0%
TGAACAATACCATTCGAAAC+TGG - chr1_1:5780853-5780872 None:intergenic 35.0%
TAATGTGCCATACTTGATTC+TGG + chr1_1:5780901-5780920 Msa0003270:intron 35.0%
! ATGCTTTTGCTTCATTGCTT+AGG + chr1_1:5780934-5780953 Msa0003270:intron 35.0%
ATAACATGAAATGGCCACAA+TGG - chr1_1:5781144-5781163 None:intergenic 35.0%
AGCAAACAGACCTATATGAA+CGG - chr1_1:5781244-5781263 None:intergenic 35.0%
! CAAAATTTTCACCATGGTGT+TGG - chr1_1:5781406-5781425 None:intergenic 35.0%
! CAACACCATGGTGAAAATTT+TGG + chr1_1:5781404-5781423 Msa0003270:intron 35.0%
! AAGAGCCAAAATTTTCACCA+TGG - chr1_1:5781412-5781431 None:intergenic 35.0%
TCTGGTGAGGATGTTATTAT+TGG + chr1_1:5781640-5781659 Msa0003270:CDS 35.0%
CTACTATTCCAGTTTCACTA+TGG - chr1_1:5781747-5781766 None:intergenic 35.0%
! AAGCCAGAAATTCAGGATTT+TGG - chr1_1:5781910-5781929 None:intergenic 35.0%
AAGAGTAAAGCCAGAAATTC+AGG - chr1_1:5781917-5781936 None:intergenic 35.0%
GTCAACAGAACCTACAAAAT+AGG - chr1_1:5781964-5781983 None:intergenic 35.0%
GTTGAGATTCGTGAAAGTAA+GGG + chr1_1:5781999-5782018 Msa0003270:CDS 35.0%
GACAAATTCAGTAGTAGACA+CGG + chr1_1:5782051-5782070 Msa0003270:CDS 35.0%
ATACCTTCTCGAATGACAAT+TGG + chr1_1:5782168-5782187 Msa0003270:CDS 35.0%
TGTTACCCTTCCACTTAAAT+AGG + chr1_1:5782391-5782410 Msa0003270:intron 35.0%
GTTACCCTTCCACTTAAATA+GGG + chr1_1:5782392-5782411 Msa0003270:intron 35.0%
TTGTCCCTATTTAAGTGGAA+GGG - chr1_1:5782399-5782418 None:intergenic 35.0%
AGCAAAGCTTTACACAAATG+TGG + chr1_1:5782713-5782732 Msa0003270:CDS 35.0%
GCAAAGCTTTACACAAATGT+GGG + chr1_1:5782714-5782733 Msa0003270:CDS 35.0%
!!! GGTTTTGAGACAATGTACAA+TGG + chr1_1:5782749-5782768 Msa0003270:CDS 35.0%
ACAATGTACAATGGTCATAC+AGG + chr1_1:5782758-5782777 Msa0003270:CDS 35.0%
! TCAGTGCAATGATTTTCCTT+GGG + chr1_1:5782789-5782808 Msa0003270:CDS 35.0%
! TTCAACCTTTGGTAATAGGT+AGG - chr1_1:5782815-5782834 None:intergenic 35.0%
! ATGCTTCAACCTTTGGTAAT+AGG - chr1_1:5782819-5782838 None:intergenic 35.0%
TTACCAAAGGTTGAAGCATA+TGG + chr1_1:5782820-5782839 Msa0003270:CDS 35.0%
GATCAAACAGTCTTTCCTTT+AGG - chr1_1:5782988-5783007 None:intergenic 35.0%
GAACAAAACTGACATTGTTC+AGG + chr1_1:5783102-5783121 Msa0003270:CDS 35.0%
TCCAAGAATGCTTACTAAAG+AGG + chr1_1:5783293-5783312 Msa0003270:CDS 35.0%
ACCTCTTTAGTAAGCATTCT+TGG - chr1_1:5783297-5783316 None:intergenic 35.0%
!! TTTTCTCAAACTTGCTCATC+AGG - chr1_1:5783352-5783371 None:intergenic 35.0%
AGTCAACATGGAATAAAGAC+TGG - chr1_1:5783379-5783398 None:intergenic 35.0%
! GGAAATGACATTCCTTTTGT+TGG + chr1_1:5783507-5783526 Msa0003270:three_prime_UTR 35.0%
! GAATGTCATTTCCCAACAAA+AGG - chr1_1:5783522-5783541 None:intergenic 35.0%
TACATTACCAGATGCGATAT+AGG - chr1_1:5783635-5783654 None:intergenic 35.0%
!!! GTTTTGTTTGGGTAAAGTAC+CGG + chr1_1:5783731-5783750 Msa0003270:three_prime_UTR 35.0%
!!! TCTTTGTTTTGTATGGGTGA+AGG + chr1_1:5783805-5783824 Msa0003270:three_prime_UTR 35.0%
AAATCACCCAAGAAGATGCT+TGG + chr1_1:5774070-5774089 Msa0003270:CDS 40.0%
AATCACCCAAGAAGATGCTT+GGG + chr1_1:5774071-5774090 Msa0003270:CDS 40.0%
CAAAGGAATCAAGCTGTTGA+CGG - chr1_1:5774134-5774153 None:intergenic 40.0%
ATTCATTCAGAACACGATGC+AGG + chr1_1:5774158-5774177 Msa0003270:CDS 40.0%
! TGGGTCAAAATTGATTCTGG+AGG + chr1_1:5774611-5774630 Msa0003270:intron 40.0%
! ATAATCTGTAACTAACGGGC+TGG + chr1_1:5775144-5775163 Msa0003270:intron 40.0%
CATTGTTTCCTAAAGCTGCT+AGG + chr1_1:5775289-5775308 Msa0003270:CDS 40.0%
! GTCATTAAGAAAGGGCATGA+TGG + chr1_1:5775363-5775382 Msa0003270:CDS 40.0%
! CACCAAAGTTTTCATTGGCA+AGG + chr1_1:5775413-5775432 Msa0003270:intron 40.0%
ACACAAATGCCACAATTAGG+AGG - chr1_1:5775500-5775519 None:intergenic 40.0%
GCAACACAAATGCCACAATT+AGG - chr1_1:5775503-5775522 None:intergenic 40.0%
! GGTGTTGGATGCTTTAATGA+AGG - chr1_1:5775525-5775544 None:intergenic 40.0%
ATCCAACACCTTCATTGTGT+TGG + chr1_1:5775535-5775554 Msa0003270:intron 40.0%
TCCAACACCTTCATTGTGTT+GGG + chr1_1:5775536-5775555 Msa0003270:intron 40.0%
AAATCCACCCAACACAATGA+AGG - chr1_1:5775546-5775565 None:intergenic 40.0%
AAATCGCCTGTGTAGTGTTT+AGG + chr1_1:5775585-5775604 Msa0003270:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG - chr1_1:5775623-5775642 None:intergenic 40.0%
CCTTACAAAACCAGCTTGTA+AGG - chr1_1:5775629-5775648 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG + chr1_1:5775626-5775645 Msa0003270:intron 40.0%
TTCAGTGATAAGCTCACAGT+AGG + chr1_1:5775865-5775884 Msa0003270:intron 40.0%
ATAATTGGATCGGACTTCTG+AGG + chr1_1:5776081-5776100 Msa0003270:intron 40.0%
GGCCTGAGTAACCTAAATAA+TGG + chr1_1:5776102-5776121 Msa0003270:intron 40.0%
TGAGAAGGTTCTTATTGCTC+AGG + chr1_1:5776256-5776275 Msa0003270:CDS 40.0%
CCCACATAAGCATACTTGTT+AGG - chr1_1:5776326-5776345 None:intergenic 40.0%
ATGCTTATGTGGGTGAAGTT+CGG + chr1_1:5776333-5776352 Msa0003270:CDS 40.0%
! GCGATTTTCATTTACCCCTT+TGG - chr1_1:5776426-5776445 None:intergenic 40.0%
GCCCGAAACACAATAATGAT+AGG - chr1_1:5776611-5776630 None:intergenic 40.0%
CATTATTGTGTTTCGGGCAT+TGG + chr1_1:5776613-5776632 Msa0003270:CDS 40.0%
! TTATTGTGTTTCGGGCATTG+GGG + chr1_1:5776615-5776634 Msa0003270:CDS 40.0%
CTTTGCGGATACTCAAATGA+TGG + chr1_1:5776679-5776698 Msa0003270:CDS 40.0%
GTATCACAAATGCTTCTTCC+AGG - chr1_1:5776721-5776740 None:intergenic 40.0%
CCCATGAAACAGCTCTTATA+AGG + chr1_1:5776994-5777013 Msa0003270:intron 40.0%
GCTCTTTGTTACCATACAGA+TGG + chr1_1:5777120-5777139 Msa0003270:intron 40.0%
GGAAAAAGAGGATCAACTGT+AGG + chr1_1:5777495-5777514 Msa0003270:CDS 40.0%
ATCAACTGTAGGTGTAACCA+AGG + chr1_1:5777506-5777525 Msa0003270:CDS 40.0%
ACACTTGTATCCTAATCTGC+AGG + chr1_1:5777606-5777625 Msa0003270:intron 40.0%
TGCTAAGGACATCCTTCAAA+AGG + chr1_1:5777631-5777650 Msa0003270:CDS 40.0%
ATACTCTCCAACACCAACAT+GGG - chr1_1:5777666-5777685 None:intergenic 40.0%
AATACTCTCCAACACCAACA+TGG - chr1_1:5777667-5777686 None:intergenic 40.0%
GAAAGTTGACTAGAGATGTC+AGG + chr1_1:5778013-5778032 Msa0003270:CDS 40.0%
AAGTTGACTAGAGATGTCAG+GGG + chr1_1:5778015-5778034 Msa0003270:CDS 40.0%
! ATGGTGCAGTGTGTTGATAA+TGG + chr1_1:5778122-5778141 Msa0003270:intron 40.0%
!! TGGTGCAGTGTGTTGATAAT+GGG + chr1_1:5778123-5778142 Msa0003270:intron 40.0%
GTACTTAAGTCCACTTGTGA+TGG - chr1_1:5778186-5778205 None:intergenic 40.0%
! CTTAAGTACTCACTTGCTAC+TGG + chr1_1:5778197-5778216 Msa0003270:CDS 40.0%
! ACTCACTTGCTACTGGTAAT+TGG + chr1_1:5778204-5778223 Msa0003270:CDS 40.0%
! CTCACTTGCTACTGGTAATT+GGG + chr1_1:5778205-5778224 Msa0003270:CDS 40.0%
! TCACTTGCTACTGGTAATTG+GGG + chr1_1:5778206-5778225 Msa0003270:CDS 40.0%
! GTGTGATAAAGTGGAAGCAT+AGG - chr1_1:5778387-5778406 None:intergenic 40.0%
TCTTCGCAAGTGTGATAAAG+TGG - chr1_1:5778396-5778415 None:intergenic 40.0%
AATTCTCCTATAGGACGTGA+AGG + chr1_1:5778419-5778438 Msa0003270:CDS 40.0%
CAATTACCTTCACGTCCTAT+AGG - chr1_1:5778428-5778447 None:intergenic 40.0%
!!! AATGGTTTTGGTTCTGAACC+AGG - chr1_1:5778560-5778579 None:intergenic 40.0%
TGAGCAATTTGGTTGTGGAT+TGG - chr1_1:5778634-5778653 None:intergenic 40.0%
CATGAACCAAACCAAACTGA+TGG + chr1_1:5778714-5778733 Msa0003270:intron 40.0%
ACCAAACCAAACTGATGGTT+TGG + chr1_1:5778719-5778738 Msa0003270:intron 40.0%
ACCAAACCATCAGTTTGGTT+TGG - chr1_1:5778723-5778742 None:intergenic 40.0%
ACTGAACCAAACCATCAGTT+TGG - chr1_1:5778728-5778747 None:intergenic 40.0%
! CCCGTAGTTGATACAATCAA+TGG + chr1_1:5778845-5778864 Msa0003270:intron 40.0%
ATTATGCAGCTGTCTTGGTT+TGG - chr1_1:5778976-5778995 None:intergenic 40.0%
TGTGAATTATGCAGCTGTCT+TGG - chr1_1:5778981-5779000 None:intergenic 40.0%
GACAGCTGCATAATTCACAA+TGG + chr1_1:5778982-5779001 Msa0003270:CDS 40.0%
CAGCTGCATAATTCACAATG+GGG + chr1_1:5778984-5779003 Msa0003270:CDS 40.0%
TATTATTTAGGCCTGTGGAC+TGG + chr1_1:5779129-5779148 Msa0003270:intron 40.0%
TTCAGCAGCATATCCTATTC+TGG + chr1_1:5779189-5779208 Msa0003270:CDS 40.0%
! ATGGGGCACAGAAAATTTTG+AGG + chr1_1:5779225-5779244 Msa0003270:CDS 40.0%
TTTCGTAAATGGTTGCTGGA+TGG + chr1_1:5779371-5779390 Msa0003270:CDS 40.0%
TTCGTAAATGGTTGCTGGAT+GGG + chr1_1:5779372-5779391 Msa0003270:CDS 40.0%
TGCCTTAAGGACATTGCTTA+AGG + chr1_1:5779649-5779668 Msa0003270:intron 40.0%
CAACCACATCTGACTTTGTT+GGG - chr1_1:5779953-5779972 None:intergenic 40.0%
ACAACCACATCTGACTTTGT+TGG - chr1_1:5779954-5779973 None:intergenic 40.0%
CAGTCGTCCTTTATTCATTG+TGG + chr1_1:5780194-5780213 Msa0003270:CDS 40.0%
AACAGGATCTTGTACAAGCA+AGG + chr1_1:5780565-5780584 Msa0003270:intron 40.0%
CATACACCCAAAATCAGTGA+TGG - chr1_1:5780642-5780661 None:intergenic 40.0%
CTCTATCTTCTTACCTTTGG+TGG + chr1_1:5780753-5780772 Msa0003270:intron 40.0%
AGACTGATACGTATTACGAG+GGG - chr1_1:5780789-5780808 None:intergenic 40.0%
CAGACTGATACGTATTACGA+GGG - chr1_1:5780790-5780809 None:intergenic 40.0%
TACCAACTACCAGTTTCGAA+TGG + chr1_1:5780841-5780860 Msa0003270:CDS 40.0%
TACCATTCGAAACTGGTAGT+TGG - chr1_1:5780846-5780865 None:intergenic 40.0%
GTGGAATCCAGAATCAAGTA+TGG - chr1_1:5780911-5780930 None:intergenic 40.0%
!! AATGAAGCAAAAGCATCAGG+TGG - chr1_1:5780930-5780949 None:intergenic 40.0%
!! AGCAATGAAGCAAAAGCATC+AGG - chr1_1:5780933-5780952 None:intergenic 40.0%
CTTCATTGCTTAGGATACCT+TGG + chr1_1:5780943-5780962 Msa0003270:intron 40.0%
ATATTATCCTCAGAAGCCAC+TGG + chr1_1:5780976-5780995 Msa0003270:CDS 40.0%
ACGAAAATGAAGATGCTCCA+TGG - chr1_1:5781014-5781033 None:intergenic 40.0%
GTGGCCATTTCATGTTATTC+TGG + chr1_1:5781146-5781165 Msa0003270:CDS 40.0%
AACCAATCATCAATAGACCG+TGG + chr1_1:5781197-5781216 Msa0003270:CDS 40.0%
AAAAACCACTCCTCTATCTC+AGG + chr1_1:5781663-5781682 Msa0003270:CDS 40.0%
AGTTTACGCCATAGTGAAAC+TGG + chr1_1:5781736-5781755 Msa0003270:CDS 40.0%
!!! GCTTTACTCTTTTTTGCTGC+TGG + chr1_1:5781926-5781945 Msa0003270:intron 40.0%
TGTTGACCACAAATGCTGAT+GGG + chr1_1:5781977-5781996 Msa0003270:CDS 40.0%
GGTTGAGATTCGTGAAAGTA+AGG + chr1_1:5781998-5782017 Msa0003270:CDS 40.0%
TCTGTTCGAATACCACAGAT+TGG + chr1_1:5782027-5782046 Msa0003270:CDS 40.0%
CTGAATTTGTCACCAATCTG+TGG - chr1_1:5782042-5782061 None:intergenic 40.0%
! ATTCGAGAAGGTATAGCATG+TGG - chr1_1:5782162-5782181 None:intergenic 40.0%
TGACCAATTGTCATTCGAGA+AGG - chr1_1:5782174-5782193 None:intergenic 40.0%
TCAGCTTATCGAGTGTATCA+TGG + chr1_1:5782191-5782210 Msa0003270:CDS 40.0%
CAGCTTATCGAGTGTATCAT+GGG + chr1_1:5782192-5782211 Msa0003270:CDS 40.0%
AGCTTATCGAGTGTATCATG+GGG + chr1_1:5782193-5782212 Msa0003270:CDS 40.0%
! ATCTCCTTCTTTTCCCATGT+GGG - chr1_1:5782229-5782248 None:intergenic 40.0%
GTTGTCCCTATTTAAGTGGA+AGG - chr1_1:5782400-5782419 None:intergenic 40.0%
TCCACTTAAATAGGGACAAC+TGG + chr1_1:5782400-5782419 Msa0003270:intron 40.0%
ACTGGTAGAGTGCATATTGT+TGG - chr1_1:5782426-5782445 None:intergenic 40.0%
! GTTTTCTACTGTAATCCAGG+TGG + chr1_1:5782682-5782701 Msa0003270:intron 40.0%
CTTTGCTGATATTATCCACC+TGG - chr1_1:5782700-5782719 None:intergenic 40.0%
TTGTCTCAAAACCACGCATT+TGG - chr1_1:5782742-5782761 None:intergenic 40.0%
TGTACAATGGTCATACAGGA+AGG + chr1_1:5782762-5782781 Msa0003270:CDS 40.0%
! CTCAGTGCAATGATTTTCCT+TGG + chr1_1:5782788-5782807 Msa0003270:CDS 40.0%
CAACCATATGCTTCAACCTT+TGG - chr1_1:5782826-5782845 None:intergenic 40.0%
! TCTTTCCTTTAGGAAGTGAG+CGG - chr1_1:5782978-5782997 None:intergenic 40.0%
TAAGTCCGTATTGAAGTCCA+TGG + chr1_1:5783152-5783171 Msa0003270:intron 40.0%
GAACACCATGGACTTCAATA+CGG - chr1_1:5783160-5783179 None:intergenic 40.0%
GAAACTAAGAATCTAGCACC+AGG - chr1_1:5783186-5783205 None:intergenic 40.0%
!! TGGCTTTTGATTGTCTTTGC+AGG + chr1_1:5783212-5783231 Msa0003270:intron 40.0%
AAGAGCAGCTTACAAGCATA+AGG - chr1_1:5783246-5783265 None:intergenic 40.0%
AGTAAGCATTCTTGGAGCTA+TGG - chr1_1:5783289-5783308 None:intergenic 40.0%
! ATCAGGCTCCTTTCTTCTTT+TGG - chr1_1:5783335-5783354 None:intergenic 40.0%
! ATCAGTAGCCTTTCAAGTGT+TGG + chr1_1:5783485-5783504 Msa0003270:three_prime_UTR 40.0%
! TCAGTAGCCTTTCAAGTGTT+GGG + chr1_1:5783486-5783505 Msa0003270:three_prime_UTR 40.0%
GTCATTTCCCAACACTTGAA+AGG - chr1_1:5783496-5783515 None:intergenic 40.0%
! TGGGTTAAGAGGTATGTTTC+AGG - chr1_1:5783589-5783608 None:intergenic 40.0%
!! AGACCTGAATGCGTTTTGTT+TGG + chr1_1:5783719-5783738 Msa0003270:three_prime_UTR 40.0%
!!! GACCTGAATGCGTTTTGTTT+GGG + chr1_1:5783720-5783739 Msa0003270:three_prime_UTR 40.0%
TACCCAAACAAAACGCATTC+AGG - chr1_1:5783725-5783744 None:intergenic 40.0%
CGAATTCGATCAGCAAATGG+AGG + chr1_1:5774029-5774048 Msa0003270:CDS 45.0%
AATGGAGGAAGAAGACGATG+AGG + chr1_1:5774044-5774063 Msa0003270:CDS 45.0%
GGGTCGAATTTCGATATCAG+CGG - chr1_1:5774199-5774218 None:intergenic 45.0%
ACCAGGATTGTGCTGAGATT+CGG - chr1_1:5774220-5774239 None:intergenic 45.0%
TCATCAGTCTGATTTCGCTG+AGG + chr1_1:5774239-5774258 Msa0003270:CDS 45.0%
CCATCAGATTCCGTCATCAT+TGG - chr1_1:5775258-5775277 None:intergenic 45.0%
!! CCAATGATGACGGAATCTGA+TGG + chr1_1:5775255-5775274 Msa0003270:CDS 45.0%
TTCCTAAAGCTGCTAGGCTT+AGG + chr1_1:5775295-5775314 Msa0003270:CDS 45.0%
TTCCTAAGCCTAGCAGCTTT+AGG - chr1_1:5775300-5775319 None:intergenic 45.0%
ATGCCACAATTAGGAGGCTA+GGG - chr1_1:5775494-5775513 None:intergenic 45.0%
AATGCCACAATTAGGAGGCT+AGG - chr1_1:5775495-5775514 None:intergenic 45.0%
! ACCCAACACAATGAAGGTGT+TGG - chr1_1:5775540-5775559 None:intergenic 45.0%
AACACCTTCATTGTGTTGGG+TGG + chr1_1:5775539-5775558 Msa0003270:intron 45.0%
ACTACACAGGCGATTTCTCT+AGG - chr1_1:5775581-5775600 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG - chr1_1:5775624-5775643 None:intergenic 45.0%
GAGAAGGATTTGACTGAGCT+TGG + chr1_1:5776188-5776207 Msa0003270:CDS 45.0%
! TCTGTTTTGTGACTCAGCCA+TGG - chr1_1:5776360-5776379 None:intergenic 45.0%
ATGCGCACAAACATAGTGCT+AGG - chr1_1:5776386-5776405 None:intergenic 45.0%
TATTCCTACCAGGGTTCTTC+AGG + chr1_1:5776542-5776561 Msa0003270:intron 45.0%
ATTCCTACCAGGGTTCTTCA+GGG + chr1_1:5776543-5776562 Msa0003270:intron 45.0%
TATATTGCCCTGAAGAACCC+TGG - chr1_1:5776553-5776572 None:intergenic 45.0%
ACAAATGCTTCTTCCAGGGA+AGG - chr1_1:5776716-5776735 None:intergenic 45.0%
CCTTAGCATACCTGCAGATT+AGG - chr1_1:5777619-5777638 None:intergenic 45.0%
CCTAATCTGCAGGTATGCTA+AGG + chr1_1:5777616-5777635 Msa0003270:intron 45.0%
TACTCTCCAACACCAACATG+GGG - chr1_1:5777665-5777684 None:intergenic 45.0%
GCCGGTGAATGATATATCTG+TGG - chr1_1:5777783-5777802 None:intergenic 45.0%
CTAAAGAGTCCGCCAAGTAA+AGG - chr1_1:5777883-5777902 None:intergenic 45.0%
!! ACTTGGCGGACTCTTTAGAA+TGG + chr1_1:5777885-5777904 Msa0003270:CDS 45.0%
TGTCAGGGGTTATGTGCAAA+AGG + chr1_1:5778029-5778048 Msa0003270:CDS 45.0%
TGCACCATTCAAGAGGTAGA+AGG - chr1_1:5778110-5778129 None:intergenic 45.0%
AACACACTGCACCATTCAAG+AGG - chr1_1:5778117-5778136 None:intergenic 45.0%
!! GCAGTGTGTTGATAATGGGA+AGG + chr1_1:5778127-5778146 Msa0003270:intron 45.0%
! CACTTGCTACTGGTAATTGG+GGG + chr1_1:5778207-5778226 Msa0003270:CDS 45.0%
! ACTCGTTGTGTTTCTGCTTC+AGG + chr1_1:5778346-5778365 Msa0003270:intron 45.0%
AGGACGTGAAGGTAATTGCT+TGG + chr1_1:5778430-5778449 Msa0003270:intron 45.0%
GAAAGATTGAAGTCTGGGTC+AGG - chr1_1:5778471-5778490 None:intergenic 45.0%
GGAGGGAAAGATTGAAGTCT+GGG - chr1_1:5778476-5778495 None:intergenic 45.0%
AGGAGGGAAAGATTGAAGTC+TGG - chr1_1:5778477-5778496 None:intergenic 45.0%
GCAACAATGCACAAAGAGGA+GGG - chr1_1:5778493-5778512 None:intergenic 45.0%
TGCAACAATGCACAAAGAGG+AGG - chr1_1:5778494-5778513 None:intergenic 45.0%
ATAAATTGGCACTAGGGGTG+TGG + chr1_1:5778528-5778547 Msa0003270:intron 45.0%
ACAATGGGGAATGATGTGTC+CGG + chr1_1:5778998-5779017 Msa0003270:CDS 45.0%
TGGGCTATTATTTAGGCCTG+TGG + chr1_1:5779124-5779143 Msa0003270:intron 45.0%
CATTGAGAAAGCTGAGACGT+CGG + chr1_1:5779427-5779446 Msa0003270:CDS 45.0%
ATTGAGAAAGCTGAGACGTC+GGG + chr1_1:5779428-5779447 Msa0003270:CDS 45.0%
CTGACTTTGTTGGGACTTAG+AGG - chr1_1:5779944-5779963 None:intergenic 45.0%
AGTCCCAACAAAGTCAGATG+TGG + chr1_1:5779947-5779966 Msa0003270:intron 45.0%
TCCATTTCTTCAGGAATCCC+CGG + chr1_1:5780341-5780360 Msa0003270:intron 45.0%
ATGGCATGATCTTGTGTCCA+AGG + chr1_1:5780374-5780393 Msa0003270:CDS 45.0%
TGGCATGATCTTGTGTCCAA+GGG + chr1_1:5780375-5780394 Msa0003270:CDS 45.0%
! CACCCAAAATCAGTGATGGA+TGG - chr1_1:5780638-5780657 None:intergenic 45.0%
GTGGTCAGGAAATGGTATGA+TGG - chr1_1:5780670-5780689 None:intergenic 45.0%
ACCATTTCCTGACCACAATC+AGG + chr1_1:5780674-5780693 Msa0003270:CDS 45.0%
ACCTGATTGTGGTCAGGAAA+TGG - chr1_1:5780678-5780697 None:intergenic 45.0%
GCAGACTGATACGTATTACG+AGG - chr1_1:5780791-5780810 None:intergenic 45.0%
TCAGTCTGCTATGGGAAAAC+AGG + chr1_1:5780802-5780821 Msa0003270:CDS 45.0%
TGCTATGGGAAAACAGGCAA+TGG + chr1_1:5780808-5780827 Msa0003270:CDS 45.0%
GCTATGGGAAAACAGGCAAT+GGG + chr1_1:5780809-5780828 Msa0003270:CDS 45.0%
ATGGCATTCTATGGCACAAG+AGG - chr1_1:5781125-5781144 None:intergenic 45.0%
TGTGCCATAGAATGCCATTG+TGG + chr1_1:5781127-5781146 Msa0003270:intron 45.0%
ATGGCCACAATGGCATTCTA+TGG - chr1_1:5781134-5781153 None:intergenic 45.0%
! AGCCACGGTCTATTGATGAT+TGG - chr1_1:5781202-5781221 None:intergenic 45.0%
CAATAGACCGTGGCTTCTTT+CGG + chr1_1:5781207-5781226 Msa0003270:CDS 45.0%
ATAGAGACCGAAAGAAGCCA+CGG - chr1_1:5781217-5781236 None:intergenic 45.0%
!! CAAAGAAGATTTTGGTCGGC+CGG + chr1_1:5781374-5781393 Msa0003270:CDS 45.0%
TGTTGCTCTTCCTGAGATAG+AGG - chr1_1:5781676-5781695 None:intergenic 45.0%
CTATCTCAGGAAGAGCAACA+AGG + chr1_1:5781676-5781695 Msa0003270:CDS 45.0%
CTGTTGACCACAAATGCTGA+TGG + chr1_1:5781976-5781995 Msa0003270:CDS 45.0%
TCTCAACCCATCAGCATTTG+TGG - chr1_1:5781986-5782005 None:intergenic 45.0%
AGTAGTAGACACGGTCAGAA+GGG + chr1_1:5782060-5782079 Msa0003270:CDS 45.0%
ATACACAAGAAGACATGCCC+TGG + chr1_1:5782100-5782119 Msa0003270:CDS 45.0%
TATCGAGTGTATCATGGGGA+AGG + chr1_1:5782197-5782216 Msa0003270:CDS 45.0%
! CATCTCCTTCTTTTCCCATG+TGG - chr1_1:5782230-5782249 None:intergenic 45.0%
GCCAGTTGTCCCTATTTAAG+TGG - chr1_1:5782404-5782423 None:intergenic 45.0%
ATGCACTCTACCAGTACACA+AGG + chr1_1:5782431-5782450 Msa0003270:intron 45.0%
AAATGTGGGTACCAAATGCG+TGG + chr1_1:5782728-5782747 Msa0003270:CDS 45.0%
! TTTGGTAATAGGTAGGCCCA+AGG - chr1_1:5782808-5782827 None:intergenic 45.0%
TTGGGCCTACCTATTACCAA+AGG + chr1_1:5782807-5782826 Msa0003270:CDS 45.0%
GATGACAAGATCCATTCTCG+TGG + chr1_1:5782845-5782864 Msa0003270:CDS 45.0%
TGCCTTGTAAGAATCTGCAC+AGG - chr1_1:5782878-5782897 None:intergenic 45.0%
!! AGGTCTTCGATTTGGAGAGA+TGG + chr1_1:5782925-5782944 Msa0003270:CDS 45.0%
CGTGATTGCATGATTGCTCA+TGG + chr1_1:5782950-5782969 Msa0003270:CDS 45.0%
CTTCCAAGAGCTAATGGCTA+TGG + chr1_1:5783263-5783282 Msa0003270:CDS 45.0%
!! TAAATTAATTATGAATAAAT+TGG + chr1_1:5778514-5778533 Msa0003270:intron 5.0%
!! TTAAAATAAAATGTATTTAT+TGG + chr1_1:5779674-5779693 Msa0003270:intron 5.0%
CACAGCCCAAGCATCTTCTT+GGG - chr1_1:5774079-5774098 None:intergenic 50.0%
TCACAGCCCAAGCATCTTCT+TGG - chr1_1:5774080-5774099 None:intergenic 50.0%
CCAGGATTGTGCTGAGATTC+GGG - chr1_1:5774219-5774238 None:intergenic 50.0%
GCGAAATCAGACTGATGACC+AGG - chr1_1:5774237-5774256 None:intergenic 50.0%
! GAAAGGGCATGATGGTGAAG+AGG + chr1_1:5775371-5775390 Msa0003270:CDS 50.0%
TGCCACAATTAGGAGGCTAG+GGG - chr1_1:5775493-5775512 None:intergenic 50.0%
!! GGAGAGTGTCCGTATGATCA+AGG + chr1_1:5776209-5776228 Msa0003270:CDS 50.0%
GAGTGTCCGTATGATCAAGG+AGG + chr1_1:5776212-5776231 Msa0003270:CDS 50.0%
CGCACAAACATAGTGCTAGG+TGG - chr1_1:5776383-5776402 None:intergenic 50.0%
TGTTTGTGCGCATGCTCTCT+CGG + chr1_1:5776393-5776412 Msa0003270:CDS 50.0%
ACTCGAATGAAGGCCCAGTT+TGG + chr1_1:5776919-5776938 Msa0003270:intron 50.0%
!!! GGGGAAGCATCTCCTTTTGA+AGG - chr1_1:5777646-5777665 None:intergenic 50.0%
AAGGAGATGCTTCCCCATGT+TGG + chr1_1:5777650-5777669 Msa0003270:CDS 50.0%
ATGCTTCCCCATGTTGGTGT+TGG + chr1_1:5777656-5777675 Msa0003270:CDS 50.0%
TGGAAATAAGAGGCTGGACC+TGG + chr1_1:5777852-5777871 Msa0003270:CDS 50.0%
! TACTAGAGCTGGAGTGTCAC+AGG + chr1_1:5778247-5778266 Msa0003270:CDS 50.0%
! CTAGGGGTGTGGTAAAAACC+TGG + chr1_1:5778539-5778558 Msa0003270:intron 50.0%
! GTATCAACTACGGGAGTGCA+TGG - chr1_1:5778839-5778858 None:intergenic 50.0%
! TGTCCTTCTGGTGTTTCTGC+CGG - chr1_1:5779020-5779039 None:intergenic 50.0%
CAGATTCTTCACCAGTCCAC+AGG - chr1_1:5779143-5779162 None:intergenic 50.0%
!! CTGTGGACTGGTGAAGAATC+TGG + chr1_1:5779141-5779160 Msa0003270:CDS 50.0%
TCATCGCGACCCTGATATGT+TGG + chr1_1:5779398-5779417 Msa0003270:CDS 50.0%
! GCGACCCTGATATGTTGGTT+AGG + chr1_1:5779403-5779422 Msa0003270:CDS 50.0%
!! TGATGGCTTTGATGTCGTGC+AGG + chr1_1:5780092-5780111 Msa0003270:intron 50.0%
TCCGGGGATTCCTGAAGAAA+TGG - chr1_1:5780345-5780364 None:intergenic 50.0%
TCATGCCATCCACCATCTTC+CGG - chr1_1:5780363-5780382 None:intergenic 50.0%
! CATTTTCGTCAACTCCCTGC+TGG + chr1_1:5781025-5781044 Msa0003270:CDS 50.0%
!! ACCATGGTGTTGGCTCTATC+CGG - chr1_1:5781396-5781415 None:intergenic 50.0%
!!! GTGTTGTTTTGCAGGGCATG+AGG + chr1_1:5781472-5781491 Msa0003270:intron 50.0%
!! AAACAGGGCACAAGAGTGTC+TGG + chr1_1:5781622-5781641 Msa0003270:intron 50.0%
CTCTTCCTGAGATAGAGGAG+TGG - chr1_1:5781671-5781690 None:intergenic 50.0%
CAGTAGTAGACACGGTCAGA+AGG + chr1_1:5782059-5782078 Msa0003270:CDS 50.0%
GTAGTAGACACGGTCAGAAG+GGG + chr1_1:5782061-5782080 Msa0003270:CDS 50.0%
GTGATGCCTTCTACAGTCCA+GGG - chr1_1:5782120-5782139 None:intergenic 50.0%
AAGATCCATTCTCGTGGACG+AGG + chr1_1:5782851-5782870 Msa0003270:CDS 50.0%
AGATCCATTCTCGTGGACGA+GGG + chr1_1:5782852-5782871 Msa0003270:CDS 50.0%
GGCCTGTGCAGATTCTTACA+AGG + chr1_1:5782873-5782892 Msa0003270:CDS 50.0%
TCTTACAAGGCAACCTGCTG+AGG + chr1_1:5782886-5782905 Msa0003270:CDS 50.0%
CTTACAAGGCAACCTGCTGA+GGG + chr1_1:5782887-5782906 Msa0003270:CDS 50.0%
TTACAAGGCAACCTGCTGAG+GGG + chr1_1:5782888-5782907 Msa0003270:CDS 50.0%
! CGTGATGGAGGTCTTCGATT+TGG + chr1_1:5782917-5782936 Msa0003270:CDS 50.0%
AAGTCCATGGTGTTCTCTCC+TGG + chr1_1:5783165-5783184 Msa0003270:intron 50.0%
GCTGCTCTTCCAAGAGCTAA+TGG + chr1_1:5783257-5783276 Msa0003270:CDS 50.0%
! TGGCCATAGCCATTAGCTCT+TGG - chr1_1:5783269-5783288 None:intergenic 50.0%
ACGAGAGGAAGCAGTCAACA+TGG - chr1_1:5783391-5783410 None:intergenic 50.0%
GAACGTGGATCACACACACA+TGG + chr1_1:5783411-5783430 Msa0003270:three_prime_UTR 50.0%
GATGAGGCTACTGGGTTAAG+AGG - chr1_1:5783600-5783619 None:intergenic 50.0%
GAGGTAGTGATGAGGCTACT+GGG - chr1_1:5783608-5783627 None:intergenic 50.0%
TAGGAAGCGAGGTAGTGATG+AGG - chr1_1:5783616-5783635 None:intergenic 50.0%
CAGATGCGATATAGGAAGCG+AGG - chr1_1:5783627-5783646 None:intergenic 50.0%
CTCGCTTCCTATATCGCATC+TGG + chr1_1:5783625-5783644 Msa0003270:three_prime_UTR 50.0%
CCCGAATCTCAGCACAATCC+TGG + chr1_1:5774216-5774235 Msa0003270:CDS 55.0%
CACAATTAGGAGGCTAGGGG+CGG - chr1_1:5775490-5775509 None:intergenic 55.0%
TGTGGGTGAAGTTCGGTCCA+TGG + chr1_1:5776340-5776359 Msa0003270:CDS 55.0%
GTTTGTGCGCATGCTCTCTC+GGG + chr1_1:5776394-5776413 Msa0003270:CDS 55.0%
!! TCTCTCGGGCTAGTGCCAAA+GGG + chr1_1:5776408-5776427 Msa0003270:CDS 55.0%
TTGCCCTGAAGAACCCTGGT+AGG - chr1_1:5776549-5776568 None:intergenic 55.0%
ATTGGGGTTTGTCGCCGACA+AGG + chr1_1:5776631-5776650 Msa0003270:CDS 55.0%
CAAGTGCGCACAGAAGTAGC+CGG - chr1_1:5777801-5777820 None:intergenic 55.0%
GGCTACTTCTGTGCGCACTT+GGG + chr1_1:5777800-5777819 Msa0003270:CDS 55.0%
TACTTCTGTGCGCACTTGGG+CGG + chr1_1:5777803-5777822 Msa0003270:CDS 55.0%
GCGGAGGGCTGAAGATGATA+GGG + chr1_1:5777822-5777841 Msa0003270:CDS 55.0%
AATAAGAGGCTGGACCTGGC+AGG + chr1_1:5777856-5777875 Msa0003270:CDS 55.0%
GACCTGGCAGGTCCTTTACT+TGG + chr1_1:5777868-5777887 Msa0003270:CDS 55.0%
CTGGCAGGTCCTTTACTTGG+CGG + chr1_1:5777871-5777890 Msa0003270:CDS 55.0%
TTGGGGGCAAGCAAATGCTG+CGG + chr1_1:5778223-5778242 Msa0003270:CDS 55.0%
AATGCTGCGGGTACTAGAGC+TGG + chr1_1:5778236-5778255 Msa0003270:CDS 55.0%
TGTCCGGCAGAAACACCAGA+AGG + chr1_1:5779014-5779033 Msa0003270:CDS 55.0%
CTTCAGGAATCCCCGGAAGA+TGG + chr1_1:5780348-5780367 Msa0003270:intron 55.0%
!! AATCCCCGGAAGATGGTGGA+TGG + chr1_1:5780355-5780374 Msa0003270:CDS 55.0%
ATGCCATCCACCATCTTCCG+GGG - chr1_1:5780361-5780380 None:intergenic 55.0%
CATGCCATCCACCATCTTCC+GGG - chr1_1:5780362-5780381 None:intergenic 55.0%
GGGACTGATTGCACCACCAA+AGG - chr1_1:5780769-5780788 None:intergenic 55.0%
GTAGTGACCAGTGGCTTCTG+AGG - chr1_1:5780986-5781005 None:intergenic 55.0%
ATGGCTCTCGTAGTGACCAG+TGG - chr1_1:5780995-5781014 None:intergenic 55.0%
ACTGGTCACTACGAGAGCCA+TGG + chr1_1:5780994-5781013 Msa0003270:CDS 55.0%
! GTTTTGCAGGGCATGAGGCA+TGG + chr1_1:5781477-5781496 Msa0003270:intron 55.0%
GACATGCCCTGGACTGTAGA+AGG + chr1_1:5782111-5782130 Msa0003270:CDS 55.0%
GGTGATGCCTTCTACAGTCC+AGG - chr1_1:5782121-5782140 None:intergenic 55.0%
CGAGTGTATCATGGGGAAGG+TGG + chr1_1:5782200-5782219 Msa0003270:CDS 55.0%
GCTGCCCACATGGGAAAAGA+AGG + chr1_1:5782222-5782241 Msa0003270:CDS 55.0%
TGGAGCCGCTCACTTCCTAA+AGG + chr1_1:5782970-5782989 Msa0003270:CDS 55.0%
ATCCACAGCGTTCACACACG+TGG - chr1_1:5783030-5783049 None:intergenic 55.0%
AGCACCAGGAGAGAACACCA+TGG - chr1_1:5783172-5783191 None:intergenic 55.0%
ACTGCTTCCTCTCGTGAACG+TGG + chr1_1:5783396-5783415 Msa0003270:three_prime_UTR 55.0%
GTGTGATCCACGTTCACGAG+AGG - chr1_1:5783406-5783425 None:intergenic 55.0%
CGAGGTAGTGATGAGGCTAC+TGG - chr1_1:5783609-5783628 None:intergenic 55.0%
CGCCCCTAGCCTCCTAATTG+TGG + chr1_1:5775488-5775507 Msa0003270:intron 60.0%
GCAGCCCTCACCTTACAAGC+TGG + chr1_1:5775616-5775635 Msa0003270:intron 60.0%
!! CTCTCTCGGGCTAGTGCCAA+AGG + chr1_1:5776407-5776426 Msa0003270:CDS 60.0%
!! CTCTCGGGCTAGTGCCAAAG+GGG + chr1_1:5776409-5776428 Msa0003270:CDS 60.0%
GGAGTTGCTTCGTCCTTCCC+TGG + chr1_1:5776700-5776719 Msa0003270:CDS 60.0%
CGGCTACTTCTGTGCGCACT+TGG + chr1_1:5777799-5777818 Msa0003270:CDS 60.0%
GGCGGAGGGCTGAAGATGAT+AGG + chr1_1:5777821-5777840 Msa0003270:CDS 60.0%
CGCCAAGTAAAGGACCTGCC+AGG - chr1_1:5777873-5777892 None:intergenic 60.0%
TGGGGGCAAGCAAATGCTGC+GGG + chr1_1:5778224-5778243 Msa0003270:CDS 60.0%
GTAGCTTGGGGAATCACCGC+AGG - chr1_1:5779345-5779364 None:intergenic 60.0%
CAGGAATCCCCGGAAGATGG+TGG + chr1_1:5780351-5780370 Msa0003270:intron 60.0%
GCCGGATAGAGCCAACACCA+TGG + chr1_1:5781392-5781411 Msa0003270:CDS 60.0%
!! GGGCACAAGAGTGTCTGGTG+AGG + chr1_1:5781627-5781646 Msa0003270:intron 60.0%
CACGGTCAGAAGGGGACTGT+TGG + chr1_1:5782069-5782088 Msa0003270:CDS 60.0%
GTCCACGTGTGTGAACGCTG+TGG + chr1_1:5783025-5783044 Msa0003270:CDS 60.0%
TTCTGTGCGCACTTGGGCGG+AGG + chr1_1:5777806-5777825 Msa0003270:CDS 65.0%
TCTGTGCGCACTTGGGCGGA+GGG + chr1_1:5777807-5777826 Msa0003270:CDS 65.0%
GGGAAGGTGGCTGCCCACAT+GGG + chr1_1:5782213-5782232 Msa0003270:CDS 65.0%
CAGGCCCTCGTCCACGAGAA+TGG - chr1_1:5782859-5782878 None:intergenic 65.0%
CAAGGCAACCTGCTGAGGGG+CGG + chr1_1:5782891-5782910 Msa0003270:CDS 65.0%
GGGGAAGGTGGCTGCCCACA+TGG + chr1_1:5782212-5782231 Msa0003270:CDS 70.0%
TCACGTGACCGCCCCTCAGC+AGG - chr1_1:5782902-5782921 None:intergenic 70.0%
GCTGAGGGGCGGTCACGTGA+TGG + chr1_1:5782902-5782921 Msa0003270:CDS 70.0%
GAGGGGCGGTCACGTGATGG+AGG + chr1_1:5782905-5782924 Msa0003270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5773865 5783897 5773865 ID=Msa0003270;Name=Msa0003270
chr1_1 mRNA 5773865 5783897 5773865 ID=Msa0003270-mRNA-1;Parent=Msa0003270;Name=Msa0003270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=138|0.91|0.96|1|1|1|25|544|1177
chr1_1 exon 5773865 5774260 5773865 ID=Msa0003270-mRNA-1:exon:1781;Parent=Msa0003270-mRNA-1
chr1_1 exon 5775225 5775392 5775225 ID=Msa0003270-mRNA-1:exon:1782;Parent=Msa0003270-mRNA-1
chr1_1 exon 5776140 5776430 5776140 ID=Msa0003270-mRNA-1:exon:1783;Parent=Msa0003270-mRNA-1
chr1_1 exon 5776554 5776751 5776554 ID=Msa0003270-mRNA-1:exon:1784;Parent=Msa0003270-mRNA-1
chr1_1 exon 5777477 5777541 5777477 ID=Msa0003270-mRNA-1:exon:1785;Parent=Msa0003270-mRNA-1
chr1_1 exon 5777628 5777714 5777628 ID=Msa0003270-mRNA-1:exon:1786;Parent=Msa0003270-mRNA-1
chr1_1 exon 5777786 5777906 5777786 ID=Msa0003270-mRNA-1:exon:1787;Parent=Msa0003270-mRNA-1
chr1_1 exon 5778006 5778050 5778006 ID=Msa0003270-mRNA-1:exon:1788;Parent=Msa0003270-mRNA-1
chr1_1 exon 5778131 5778268 5778131 ID=Msa0003270-mRNA-1:exon:1789;Parent=Msa0003270-mRNA-1
chr1_1 exon 5778368 5778440 5778368 ID=Msa0003270-mRNA-1:exon:1790;Parent=Msa0003270-mRNA-1
chr1_1 exon 5778964 5779040 5778964 ID=Msa0003270-mRNA-1:exon:1791;Parent=Msa0003270-mRNA-1
chr1_1 exon 5779139 5779246 5779139 ID=Msa0003270-mRNA-1:exon:1792;Parent=Msa0003270-mRNA-1
chr1_1 exon 5779333 5779449 5779333 ID=Msa0003270-mRNA-1:exon:1793;Parent=Msa0003270-mRNA-1
chr1_1 exon 5780114 5780269 5780114 ID=Msa0003270-mRNA-1:exon:1794;Parent=Msa0003270-mRNA-1
chr1_1 exon 5780354 5780458 5780354 ID=Msa0003270-mRNA-1:exon:1795;Parent=Msa0003270-mRNA-1
chr1_1 exon 5780570 5780695 5780570 ID=Msa0003270-mRNA-1:exon:1796;Parent=Msa0003270-mRNA-1
chr1_1 exon 5780785 5780862 5780785 ID=Msa0003270-mRNA-1:exon:1797;Parent=Msa0003270-mRNA-1
chr1_1 exon 5780956 5781051 5780956 ID=Msa0003270-mRNA-1:exon:1798;Parent=Msa0003270-mRNA-1
chr1_1 exon 5781137 5781252 5781137 ID=Msa0003270-mRNA-1:exon:1799;Parent=Msa0003270-mRNA-1
chr1_1 exon 5781344 5781413 5781344 ID=Msa0003270-mRNA-1:exon:1800;Parent=Msa0003270-mRNA-1
chr1_1 exon 5781486 5781539 5781486 ID=Msa0003270-mRNA-1:exon:1801;Parent=Msa0003270-mRNA-1
chr1_1 exon 5781628 5781771 5781628 ID=Msa0003270-mRNA-1:exon:1802;Parent=Msa0003270-mRNA-1
chr1_1 exon 5781973 5782272 5781973 ID=Msa0003270-mRNA-1:exon:1803;Parent=Msa0003270-mRNA-1
chr1_1 exon 5782701 5783123 5782701 ID=Msa0003270-mRNA-1:exon:1804;Parent=Msa0003270-mRNA-1
chr1_1 exon 5783234 5783897 5783234 ID=Msa0003270-mRNA-1:exon:1805;Parent=Msa0003270-mRNA-1
chr1_1 five_prime_UTR 5773865 5774002 5773865 ID=Msa0003270-mRNA-1:five_prime_utr;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5774003 5774260 5774003 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5775225 5775392 5775225 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5776140 5776430 5776140 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5776554 5776751 5776554 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5777477 5777541 5777477 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5777628 5777714 5777628 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5777786 5777906 5777786 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5778006 5778050 5778006 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5778131 5778268 5778131 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5778368 5778440 5778368 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5778964 5779040 5778964 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5779139 5779246 5779139 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5779333 5779449 5779333 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5780114 5780269 5780114 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5780354 5780458 5780354 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5780570 5780695 5780570 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5780785 5780862 5780785 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5780956 5781051 5780956 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5781137 5781252 5781137 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5781344 5781413 5781344 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5781486 5781539 5781486 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5781628 5781771 5781628 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5781973 5782272 5781973 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5782701 5783123 5782701 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 CDS 5783234 5783353 5783234 ID=Msa0003270-mRNA-1:cds;Parent=Msa0003270-mRNA-1
chr1_1 three_prime_UTR 5783354 5783897 5783354 ID=Msa0003270-mRNA-1:three_prime_utr;Parent=Msa0003270-mRNA-1
Gene Sequence

>Msa0003270

ATGATGATGGATTTAGAAGAAGAAAACGAATTCGATCAGCAAATGGAGGAAGAAGACGATGAGGAAGAAATCACCCAAGAAGATGCTTGGGCTGTGATTTCTGCTTATTTTGAAGAAAAAGGACTTGTCCGTCAACAGCTTGATTCCTTTGATGAATTCATTCAGAACACGATGCAGGAGATAGTTGATGAATCCGCTGATATCGAAATTCGACCCGAATCTCAGCACAATCCTGGTCATCAGTCTGATTTCGCTGAGATAAGCTTCGGTCAGATTTATTTGAGTAAGCCAATGATGACGGAATCTGATGGAGAAACTGCTACATTGTTTCCTAAAGCTGCTAGGCTTAGGAATCTGACGTATTCAGCTCCTTTGTATGTTGATGTTTCTAAGAGGGTCATTAAGAAAGGGCATGATGGTGAAGAGGTTCCTATTATGCTTCGGTCTAGTTATTGCACACTATATCAGAATTCAGAGAAGGATTTGACTGAGCTTGGAGAGTGTCCGTATGATCAAGGAGGTTATTTCATTATTAATGGCAGTGAGAAGGTTCTTATTGCTCAGGAGAAGATGAGCACCAATCATGTCTATGTCTTTAAGAAGAGGCAACCTAACAAGTATGCTTATGTGGGTGAAGTTCGGTCCATGGCTGAGTCACAAAACAGACCACCTAGCACTATGTTTGTGCGCATGCTCTCTCGGGCTAGTGCCAAAGGGGGTTCTTCAGGGCAATATATACGTGCTACTCTTCCTTACATTCGAACTGAAATTCCTATCATTATTGTGTTTCGGGCATTGGGGTTTGTCGCCGACAAGGATATCCTTGAACATATATGCTATGACTTTGCGGATACTCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTGATACAAAATCAACAGGTTGCACTTGATTATATTGGAAAAAGAGGATCAACTGTAGGTGTAACCAAGGAAAAGAGAATTAAGTATGCTAAGGACATCCTTCAAAAGGAGATGCTTCCCCATGTTGGTGTTGGAGAGTATTGCGAGACTAAAAAAGCATACTATTTTGGATATATCATTCACCGGCTACTTCTGTGCGCACTTGGGCGGAGGGCTGAAGATGATAGGGATCATTATGGAAATAAGAGGCTGGACCTGGCAGGTCCTTTACTTGGCGGACTCTTTAGAATGCTATTCAGAAAGTTGACTAGAGATGTCAGGGGTTATGTGCAAAAGTGTGTTGATAATGGGAAGGATGTTAACCTGCAATTTGCTATCAAAGCAAAAACCATCACAAGTGGACTTAAGTACTCACTTGCTACTGGTAATTGGGGGCAAGCAAATGCTGCGGGTACTAGAGCTGGAGTGTCACAGGTGCTAAATCGTTTAACCTATGCTTCCACTTTATCACACTTGCGAAGATTGAATTCTCCTATAGGACGTGAAGGAAAGTTGGCCAAACCAAGACAGCTGCATAATTCACAATGGGGAATGATGTGTCCGGCAGAAACACCAGAAGGACAAGCCTGTGGACTGGTGAAGAATCTGGCCTTGATGGTATACATTACAGTTGGTTCAGCAGCATATCCTATTCTGGAGTTTTTAGAAGAATGGGGCACAGAAAATTTTGAGGAAATTTCTCCTGCGGTGATTCCCCAAGCTACAAAAATTTTCGTAAATGGTTGCTGGATGGGTATTCATCGCGACCCTGATATGTTGGTTAGGACATTGAGAAAGCTGAGACGTCGGGTTGATGTTAATACTGAAGTTGGGGTTGTTAGAGATATCCGTCTTAAAGAACTGCGCATATATACAGATTATGGTCGCTGCAGTCGTCCTTTATTCATTGTGGATAAACAAAGGCTTCTCATAAAGAAGAAAGACATTCATTCTTTGCAGCAAAGGGAATCCCCGGAAGATGGTGGATGGCATGATCTTGTGTCCAAGGGCTTTATAGAATATATCGACACAGAAGAGGAAGAGACTACTATGATTTCCATGACAATTAATGATCTTGTACAAGCAAGGCTGAATCCAGAAGAAGCATATTCTGATACATACACTCACTGTGAAATCCATCCATCACTGATTTTGGGTGTATGTGCGTCCATCATACCATTTCCTGACCACAATCAGTCCCCTCGTAATACGTATCAGTCTGCTATGGGAAAACAGGCAATGGGAATTTATGTTACCAACTACCAGTTTCGAATGGATACCTTGGCGTATGTTTTATATTATCCTCAGAAGCCACTGGTCACTACGAGAGCCATGGAGCATCTTCATTTTCGTCAACTCCCTGCTGGAATTAATGCCATTGTGGCCATTTCATGTTATTCTGGTTATAATCAAGAAGATTCTGTCATCATGAACCAATCATCAATAGACCGTGGCTTCTTTCGGTCTCTATTTTTCCGTTCATATAGAGATGAAGAGAAAAAAATGGGAACTCTTGTCAAAGAAGATTTTGGTCGGCCGGATAGAGCCAACACCATGGGCATGAGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCTCCACCTGGCACAAGAGTGTCTGGTGAGGATGTTATTATTGGAAAAACCACTCCTCTATCTCAGGAAGAGCAACAAGGACAAGCTGCTCGTTACTCAAAACGTGATCACAGCATAAGTTTACGCCATAGTGAAACTGGAATAGTAGATCAAGTTCTGTTGACCACAAATGCTGATGGGTTGAGATTCGTGAAAGTAAGGGTGAGATCTGTTCGAATACCACAGATTGGTGACAAATTCAGTAGTAGACACGGTCAGAAGGGGACTGTTGGTATGACTTATACACAAGAAGACATGCCCTGGACTGTAGAAGGCATCACCCCTGATATTATTGTCAATCCACATGCTATACCTTCTCGAATGACAATTGGTCAGCTTATCGAGTGTATCATGGGGAAGGTGGCTGCCCACATGGGAAAAGAAGGAGATGCTACTCCTTTTACAGATGTTACTGTGGATAATATCAGCAAAGCTTTACACAAATGTGGGTACCAAATGCGTGGTTTTGAGACAATGTACAATGGTCATACAGGAAGGCGTCTCAGTGCAATGATTTTCCTTGGGCCTACCTATTACCAAAGGTTGAAGCATATGGTTGATGACAAGATCCATTCTCGTGGACGAGGGCCTGTGCAGATTCTTACAAGGCAACCTGCTGAGGGGCGGTCACGTGATGGAGGTCTTCGATTTGGAGAGATGGAACGTGATTGCATGATTGCTCATGGAGCCGCTCACTTCCTAAAGGAAAGACTGTTTGATCAAAGTGATGCATATAGAGTCCACGTGTGTGAACGCTGTGGATTGATAGCTATTGCAAATCTGAAGAAGAATTCTTTTGAGTGTAGGGGCTGCAAGAACAAAACTGACATTGTTCAGGTTTATATTCCTTATGCTTGTAAGCTGCTCTTCCAAGAGCTAATGGCTATGGCCATAGCTCCAAGAATGCTTACTAAAGAGGTGAAAGCTATAAAAGACCAAAAGAAGAAAGGAGCCTGA
Protein sequence

>Msa0003270

MMMDLEEENEFDQQMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAEISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKGA*