Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466220 | PNX71279.1 | 82.407 | 216 | 38 | 0 | 1 | 216 | 75 | 290 | 2.02e-125 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466220 | A0A2K3KYC5 | 82.407 | 216 | 38 | 0 | 1 | 216 | 75 | 290 | 9.66e-126 | 396 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1466220 | Msa1466540 | 0.809692 | 1.668438e-50 | -8.615850e-47 |
| Msa0657610 | Msa1466220 | 0.815560 | 8.682688e-52 | -8.615850e-47 |
| Msa0731940 | Msa1466220 | 0.811703 | 6.130360e-51 | -8.615850e-47 |
| Msa0169860 | Msa1466220 | 0.810636 | 1.044586e-50 | -8.615850e-47 |
| Msa1306850 | Msa1466220 | 0.803332 | 3.667596e-49 | -8.615850e-47 |
| Msa0341540 | Msa1466220 | 0.800938 | 1.139306e-48 | -8.615850e-47 |
| Msa1137570 | Msa1466220 | 0.804279 | 2.331631e-49 | -8.615850e-47 |
| Msa1139890 | Msa1466220 | 0.811463 | 6.913694e-51 | -8.615850e-47 |
| Msa0555020 | Msa1466220 | 0.802738 | 4.864329e-49 | -8.615850e-47 |
| Msa0581050 | Msa1466220 | 0.805317 | 1.414953e-49 | -8.615850e-47 |
| Msa0903390 | Msa1466220 | 0.803917 | 2.772426e-49 | -8.615850e-47 |
| Msa0969520 | Msa1466220 | 0.813390 | 2.622139e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466220 | MtrunA17_Chr2g0309001 | 71.910 | 178 | 50 | 0 | 1 | 178 | 277 | 454 | 5.74e-92 | 286 |
| Msa1466220 | MtrunA17_Chr7g0242031 | 58.716 | 218 | 90 | 0 | 1 | 218 | 233 | 450 | 1.91e-88 | 278 |
| Msa1466220 | MtrunA17_Chr5g0415911 | 60.096 | 208 | 83 | 0 | 1 | 208 | 270 | 477 | 1.26e-84 | 268 |
| Msa1466220 | MtrunA17_Chr3g0097741 | 58.716 | 218 | 90 | 0 | 1 | 218 | 285 | 502 | 5.30e-84 | 281 |
| Msa1466220 | MtrunA17_Chr7g0226101 | 55.708 | 219 | 97 | 0 | 1 | 219 | 180 | 398 | 2.06e-83 | 267 |
| Msa1466220 | MtrunA17_Chr8g0393091 | 55.093 | 216 | 97 | 0 | 1 | 216 | 279 | 494 | 4.61e-71 | 243 |
| Msa1466220 | MtrunA17_Chr4g0029851 | 52.284 | 197 | 91 | 3 | 5 | 199 | 180 | 375 | 2.62e-63 | 209 |
| Msa1466220 | MtrunA17_Chr2g0309021 | 35.769 | 260 | 133 | 2 | 228 | 456 | 171 | 427 | 2.77e-45 | 165 |
| Msa1466220 | MtrunA17_Chr2g0303761 | 47.482 | 139 | 69 | 3 | 83 | 218 | 1 | 138 | 1.82e-32 | 122 |
| Msa1466220 | MtrunA17_Chr2g0305311 | 28.295 | 258 | 140 | 7 | 231 | 456 | 152 | 396 | 9.72e-20 | 91.7 |
| Msa1466220 | MtrunA17_Chr2g0314741 | 63.158 | 57 | 21 | 0 | 5 | 61 | 290 | 346 | 1.81e-17 | 83.6 |
| Msa1466220 | MtrunA17_Chr4g0014621 | 54.839 | 62 | 27 | 1 | 138 | 198 | 1 | 62 | 1.35e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 113 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATTAATCGGAAATAAT+TGG | 0.164930 | tig0046248:+971 | Msa1466220:intergenic |
| TTGCTTTGCAACAGACTTAA+AGG | 0.168411 | tig0046248:-902 | Msa1466220:intron |
| TATAAGTTCATCCCTGGTTT+TGG | 0.224211 | tig0046248:+673 | Msa1466220:intergenic |
| CAATTATCCTTGTATGCTTT+TGG | 0.239540 | tig0046248:+922 | Msa1466220:intergenic |
| AAAGGATAAAACTCCAGATT+TGG | 0.259082 | tig0046248:-1113 | Msa1466220:CDS |
| TGAATGAATTGAAGGAATTA+TGG | 0.274056 | tig0046248:-1749 | Msa1466220:CDS |
| TCTGTTCTAGTTCTTGGAAA+TGG | 0.282625 | tig0046248:-333 | Msa1466220:intron |
| CGATGATCAGAGGCAAATTC+AGG | 0.291884 | tig0046248:+1964 | Msa1466220:intergenic |
| TTTGCAGATGACTCTTTATC+TGG | 0.294332 | tig0046248:+266 | Msa1466220:intergenic |
| CTTTGCAGTCTTGGCTTTAG+TGG | 0.311708 | tig0046248:+2108 | Msa1466220:intergenic |
| TCCTTTCAGTAGCTCCTTGT+TGG | 0.312047 | tig0046248:+1130 | Msa1466220:intergenic |
| ATCTTATCTATGATCATTCC+TGG | 0.318815 | tig0046248:-1819 | Msa1466220:CDS |
| TTCCACCTTTCAAAATTAAT+CGG | 0.320177 | tig0046248:+961 | Msa1466220:intergenic |
| GGTCTTCAGTGGTCATAAAT+TGG | 0.324251 | tig0046248:+780 | Msa1466220:intergenic |
| ATCCAAGGAGGAAGATTATA+TGG | 0.346551 | tig0046248:+1853 | Msa1466220:intergenic |
| GATGTTGTTAACTTACCTAT+TGG | 0.359913 | tig0046248:-1090 | Msa1466220:CDS |
| GAAGCACAAGCCTTGCTTGC+AGG | 0.359960 | tig0046248:-1021 | Msa1466220:CDS |
| GATGTTATCGGAAGAGTGTT+TGG | 0.361397 | tig0046248:-68 | Msa1466220:CDS |
| TATCTGGTGGATGGGTTTCA+AGG | 0.365390 | tig0046248:+282 | Msa1466220:intergenic |
| CTGTTCTAGTTCTTGGAAAT+GGG | 0.367387 | tig0046248:-332 | Msa1466220:intron |
| AGGTATATTTCTCCACGATT+TGG | 0.375888 | tig0046248:+302 | Msa1466220:intergenic |
| AGTTAACAACATCCCAAATC+TGG | 0.377068 | tig0046248:+1100 | Msa1466220:intergenic |
| CAAAATGAGCCCATTGAATT+CGG | 0.377399 | tig0046248:+627 | Msa1466220:intergenic |
| ATTTCTCCGAATGATGTTAT+CGG | 0.388974 | tig0046248:-80 | Msa1466220:CDS |
| ATGAACAATCTTTGCAGTCT+TGG | 0.392550 | tig0046248:+2099 | Msa1466220:intergenic |
| TGGACAATTAGTGACTTTCC+TGG | 0.398171 | tig0046248:-1660 | Msa1466220:CDS |
| CCTGGTCTAGGTAATTTGTC+TGG | 0.398854 | tig0046248:-1642 | Msa1466220:CDS |
| TTCCATATAATCTTCCTCCT+TGG | 0.402261 | tig0046248:-1866 | Msa1466220:CDS |
| AAGACTGCAAAGATTGTTCA+TGG | 0.413423 | tig0046248:-2108 | Msa1466220:five_prime_UTR |
| ACAATCACACGTTCTCCAAT+AGG | 0.424246 | tig0046248:+1075 | Msa1466220:intergenic |
| AAGGATAAAACTCCAGATTT+GGG | 0.426699 | tig0046248:-1112 | Msa1466220:CDS |
| AAGAGTGCGGTCCATGGGTA+TGG | 0.427528 | tig0046248:-30 | None:intergenic |
| AATGATCATAGATAAGATAA+AGG | 0.428561 | tig0046248:+1813 | Msa1466220:intergenic |
| GGCTTGCCCAACTTGTAACT+TGG | 0.432068 | tig0046248:-1598 | Msa1466220:CDS |
| ATGACTCTTTATCTGGTGGA+TGG | 0.437409 | tig0046248:+273 | Msa1466220:intergenic |
| GTCTAGGTAATTTGTCTGGT+TGG | 0.440511 | tig0046248:-1638 | Msa1466220:CDS |
| ACCCCTTGTGAATGAATTGA+AGG | 0.445730 | tig0046248:-1757 | Msa1466220:CDS |
| AGTCTAAATCTATGATTCCT+TGG | 0.447271 | tig0046248:+1499 | Msa1466220:intergenic |
| ATGTTATCGGAAGAGTGTTT+GGG | 0.449207 | tig0046248:-67 | Msa1466220:CDS |
| TTACTACTCATGGTCCCAAA+AGG | 0.455282 | tig0046248:+1904 | Msa1466220:intergenic |
| TCGCATCCAAGTTACAAGTT+GGG | 0.460852 | tig0046248:+1581 | Msa1466220:intergenic |
| TGACTCTTTATCTGGTGGAT+GGG | 0.463878 | tig0046248:+274 | Msa1466220:intergenic |
| TTCGCATCCAAGTTACAAGT+TGG | 0.469566 | tig0046248:+1580 | Msa1466220:intergenic |
| AAGGCTTGTGCTTCACCATA+TGG | 0.472711 | tig0046248:+1030 | Msa1466220:intergenic |
| ATCTTAACATTTCAAAGAAG+TGG | 0.475042 | tig0046248:-739 | Msa1466220:CDS |
| CCTCTGATCATCGAAATGTT+CGG | 0.476054 | tig0046248:-1965 | Msa1466220:CDS |
| CGGTTGGGCCTCTCTAGTGA+TGG | 0.477239 | tig0046248:-1945 | Msa1466220:CDS |
| TCTGGTTGGAACACACATAC+AGG | 0.478985 | tig0046248:-1624 | Msa1466220:CDS |
| GCCTTGCTTGCAGGATATTG+TGG | 0.483512 | tig0046248:-1012 | Msa1466220:CDS |
| GATCATCGAAATGTTCGGTT+GGG | 0.485532 | tig0046248:-1960 | Msa1466220:CDS |
| ATTAGTGACTTTCCTGGTCT+AGG | 0.489609 | tig0046248:-1654 | Msa1466220:CDS |
| GAATGCGGGCAGCTCTTATG+TGG | 0.492576 | tig0046248:-1680 | Msa1466220:CDS |
| AACGGTATATTTACTACTCA+TGG | 0.493579 | tig0046248:+1894 | Msa1466220:intergenic |
| TAACAGGAACAAATTCAAAC+GGG | 0.497980 | tig0046248:-134 | Msa1466220:intron |
| CTCTGGAAGAGTGCGGTCCA+TGG | 0.498752 | tig0046248:-36 | Msa1466220:CDS |
| CTAACAGGAACAAATTCAAA+CGG | 0.499208 | tig0046248:-135 | Msa1466220:intron |
| TGATCATCGAAATGTTCGGT+TGG | 0.499561 | tig0046248:-1961 | Msa1466220:CDS |
| TGAATTCGGTCTACACCATC+AGG | 0.500209 | tig0046248:+641 | Msa1466220:intergenic |
| TTCCATGCCTCACCATCCCT+CGG | 0.500574 | tig0046248:+2006 | Msa1466220:intergenic |
| CGCACTCTTCCAGAGTGCTC+AGG | 0.505673 | tig0046248:+44 | Msa1466220:intergenic |
| TGAGTAGTAAATATACCGTT+TGG | 0.509142 | tig0046248:-1902 | Msa1466220:CDS |
| GATTGCAATATCTCTTTGCT+AGG | 0.511310 | tig0046248:+759 | Msa1466220:intergenic |
| TATATAATCGATCCAAAACC+AGG | 0.513328 | tig0046248:-685 | Msa1466220:CDS |
| TACTACTCATGGTCCCAAAA+GGG | 0.514574 | tig0046248:+1905 | Msa1466220:intergenic |
| GATGAACAAAATGCTCCATA+TGG | 0.515512 | tig0046248:-1045 | Msa1466220:CDS |
| ACTCTTCCGATAACATCATT+CGG | 0.518682 | tig0046248:+74 | Msa1466220:intergenic |
| GCTGCTTATAAGTTCATCCC+TGG | 0.521725 | tig0046248:+667 | Msa1466220:intergenic |
| TCTGGAAGAGTGCGGTCCAT+GGG | 0.528729 | tig0046248:-35 | Msa1466220:CDS |
| CTAACAAGGATGGGCTATTG+AGG | 0.528836 | tig0046248:-2043 | Msa1466220:CDS |
| TGGTGTAGACCGAATTCAAT+GGG | 0.535158 | tig0046248:-636 | Msa1466220:CDS |
| TGACGGTGGATCACGATTGA+TGG | 0.539125 | tig0046248:+1433 | Msa1466220:intergenic |
| TCTTAACATTTCAAAGAAGT+GGG | 0.540529 | tig0046248:-738 | Msa1466220:CDS |
| GGGCATGCCAAAAGCATACA+AGG | 0.540582 | tig0046248:-929 | Msa1466220:CDS |
| GTGTTTGGGCCTGAGCACTC+TGG | 0.542307 | tig0046248:-53 | Msa1466220:CDS |
| TTGGAACACACATACAGGCT+TGG | 0.548144 | tig0046248:-1619 | Msa1466220:CDS |
| TCCACAATATCCTGCAAGCA+AGG | 0.553290 | tig0046248:+1011 | None:intergenic |
| AGAGTGCGGTCCATGGGTAT+GGG | 0.554014 | tig0046248:-29 | None:intergenic |
| ATGGTGTAGACCGAATTCAA+TGG | 0.559958 | tig0046248:-637 | Msa1466220:CDS |
| GCTTCAGACACTAACAAGGA+TGG | 0.561586 | tig0046248:-2053 | Msa1466220:CDS |
| ATCTGCAAATGATGCAGCAA+TGG | 0.562790 | tig0046248:-252 | Msa1466220:CDS |
| GCAGATGACTCTTTATCTGG+TGG | 0.573950 | tig0046248:+269 | Msa1466220:intergenic |
| CCAGACAAATTACCTAGACC+AGG | 0.583746 | tig0046248:+1631 | Msa1466220:intergenic |
| CTATTGAGGCATCCGAGGGA+TGG | 0.585340 | tig0046248:-2029 | Msa1466220:CDS |
| CTTCAGACACTAACAAGGAT+GGG | 0.587162 | tig0046248:-2052 | Msa1466220:CDS |
| TCCTTCAATTCATTCACAAG+GGG | 0.588929 | tig0046248:+1745 | Msa1466220:intergenic |
| ATTCCTTCAATTCATTCACA+AGG | 0.589896 | tig0046248:+1743 | Msa1466220:intergenic |
| TTCCTTCAATTCATTCACAA+GGG | 0.593017 | tig0046248:+1744 | Msa1466220:intergenic |
| CTTATAAGCAGCGTTCCTGA+TGG | 0.596079 | tig0046248:-656 | Msa1466220:CDS |
| ATGGGCTATTGAGGCATCCG+AGG | 0.598272 | tig0046248:-2034 | Msa1466220:CDS |
| TCTCTTTGCTAGGTCTTCAG+TGG | 0.601859 | tig0046248:+769 | Msa1466220:intergenic |
| TATGATCATTCCTGGTCCGA+CGG | 0.607946 | tig0046248:-1811 | Msa1466220:CDS |
| ACCAACAAGGAGCTACTGAA+AGG | 0.611160 | tig0046248:-1131 | Msa1466220:CDS |
| TTGAAGGAATTATGGACTGA+TGG | 0.619144 | tig0046248:-1741 | Msa1466220:CDS |
| CGGTGGATCACGATTGATGG+TGG | 0.621850 | tig0046248:+1436 | Msa1466220:intergenic |
| ATCCGAGGGATGGTGAGGCA+TGG | 0.624608 | tig0046248:-2019 | Msa1466220:CDS |
| AGACTGCAAAGATTGTTCAT+GGG | 0.625991 | tig0046248:-2107 | Msa1466220:five_prime_UTR |
| GTGGTCATAAATTGGAATCG+AGG | 0.626051 | tig0046248:+788 | Msa1466220:intergenic |
| AGGAACTGCTCCCATACCCA+TGG | 0.626193 | tig0046248:+19 | Msa1466220:intergenic |
| CTGAGCACTCTGGAAGAGTG+CGG | 0.635163 | tig0046248:-43 | Msa1466220:CDS |
| GTGTGTTTCATACACATCCA+AGG | 0.635619 | tig0046248:+1838 | Msa1466220:intergenic |
| CCGAACATTTCGATGATCAG+AGG | 0.637973 | tig0046248:+1954 | Msa1466220:intergenic |
| TGGGCTATTGAGGCATCCGA+GGG | 0.638807 | tig0046248:-2033 | Msa1466220:CDS |
| GGTTAAAACCATCACTAGAG+AGG | 0.639472 | tig0046248:+1926 | Msa1466220:intergenic |
| GCATGCTTCAGACACTAACA+AGG | 0.642313 | tig0046248:-2057 | Msa1466220:CDS |
| GAGGCATCCGAGGGATGGTG+AGG | 0.642900 | tig0046248:-2024 | Msa1466220:CDS |
| CTGCGCATAGACAAACTATG+TGG | 0.651082 | tig0046248:-715 | Msa1466220:CDS |
| ATGGGACGACAACCAAATCG+TGG | 0.666274 | tig0046248:-314 | Msa1466220:CDS |
| AAACTGCAGAGCATATGAGA+TGG | 0.671272 | tig0046248:-2079 | Msa1466220:CDS |
| TCGTTTGAAACCAGAAACAC+AGG | 0.675625 | tig0046248:-597 | Msa1466220:intron |
| GGAATTATGGACTGATGGTG+TGG | 0.688092 | tig0046248:-1736 | Msa1466220:CDS |
| ATATAATCGATCCAAAACCA+GGG | 0.688882 | tig0046248:-684 | Msa1466220:CDS |
| TGTATTGCAAAAGACCAACA+AGG | 0.702643 | tig0046248:-1144 | Msa1466220:CDS |
| TGTTTCATACACATCCAAGG+AGG | 0.753279 | tig0046248:+1841 | Msa1466210:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTATTTGTTTTTTAAT+AGG | - | tig0046248:1662-1681 | Msa1466220:CDS | 10.0% |
| !!! | ATTTGTATTTGTTTTTTAAT+AGG | - | tig0046248:1662-1681 | Msa1466220:CDS | 10.0% |
| !! | AAACAAAAAACTAACAATAA+AGG | + | tig0046248:825-844 | Msa1466220:intergenic | 15.0% |
| !! | AAACAAAAAACTAACAATAA+AGG | + | tig0046248:825-844 | Msa1466220:intergenic | 15.0% |
| !! | AATGATCATAGATAAGATAA+AGG | + | tig0046248:370-389 | Msa1466220:intergenic | 20.0% |
| !!! | GTAAACATCATTTTTATTTC+CGG | + | tig0046248:409-428 | Msa1466220:intergenic | 20.0% |
| !! | AAATATTTAACTACACTTTC+TGG | - | tig0046248:903-922 | Msa1466220:CDS | 20.0% |
| !! | CAAAATTAATCGGAAATAAT+TGG | + | tig0046248:1212-1231 | Msa1466220:intergenic | 20.0% |
| !!! | TATTTCCGATTAATTTTGAA+AGG | - | tig0046248:1214-1233 | Msa1466220:intron | 20.0% |
| !! | AATGATCATAGATAAGATAA+AGG | + | tig0046248:370-389 | Msa1466220:intergenic | 20.0% |
| !!! | GTAAACATCATTTTTATTTC+CGG | + | tig0046248:409-428 | Msa1466220:intergenic | 20.0% |
| !! | AAATATTTAACTACACTTTC+TGG | - | tig0046248:903-922 | Msa1466220:CDS | 20.0% |
| !! | CAAAATTAATCGGAAATAAT+TGG | + | tig0046248:1212-1231 | Msa1466220:intergenic | 20.0% |
| !!! | TATTTCCGATTAATTTTGAA+AGG | - | tig0046248:1214-1233 | Msa1466220:intron | 20.0% |
| ! | TGAATGAATTGAAGGAATTA+TGG | - | tig0046248:442-461 | Msa1466220:intron | 25.0% |
| !!! | CAAATGAAAGTTTTAGAATG+CGG | - | tig0046248:496-515 | Msa1466220:intron | 25.0% |
| !!! | AAATGAAAGTTTTAGAATGC+GGG | - | tig0046248:497-516 | Msa1466220:intron | 25.0% |
| !!! | TAGTAGCAAGTTTTGTTTTA+TGG | - | tig0046248:641-660 | Msa1466220:CDS | 25.0% |
| !!! | AGTAGCAAGTTTTGTTTTAT+GGG | - | tig0046248:642-661 | Msa1466220:CDS | 25.0% |
| !! | TTTTTAAATTTGCATTCCAG+AGG | + | tig0046248:929-948 | Msa1466220:intergenic | 25.0% |
| ! | TTCCACCTTTCAAAATTAAT+CGG | + | tig0046248:1222-1241 | Msa1466220:intergenic | 25.0% |
| !!! | ATTAATTTTGAAAGGTGGAA+TGG | - | tig0046248:1222-1241 | Msa1466220:intron | 25.0% |
| ! | ATCTTAACATTTCAAAGAAG+TGG | - | tig0046248:1441-1460 | Msa1466220:intron | 25.0% |
| ! | TCTTAACATTTCAAAGAAGT+GGG | - | tig0046248:1442-1461 | Msa1466220:intron | 25.0% |
| ! | GCTACAATTGTAAGTTAAAT+TGG | - | tig0046248:1950-1969 | Msa1466220:CDS | 25.0% |
| ! | GTTAAATTGGAACAAACTAT+TGG | - | tig0046248:1963-1982 | Msa1466220:CDS | 25.0% |
| ! | TGAATGAATTGAAGGAATTA+TGG | - | tig0046248:442-461 | Msa1466220:intron | 25.0% |
| !!! | CAAATGAAAGTTTTAGAATG+CGG | - | tig0046248:496-515 | Msa1466220:intron | 25.0% |
| !!! | AAATGAAAGTTTTAGAATGC+GGG | - | tig0046248:497-516 | Msa1466220:intron | 25.0% |
| !!! | TAGTAGCAAGTTTTGTTTTA+TGG | - | tig0046248:641-660 | Msa1466220:CDS | 25.0% |
| !!! | AGTAGCAAGTTTTGTTTTAT+GGG | - | tig0046248:642-661 | Msa1466220:CDS | 25.0% |
| !! | TTTTTAAATTTGCATTCCAG+AGG | + | tig0046248:929-948 | Msa1466220:intergenic | 25.0% |
| ! | TTCCACCTTTCAAAATTAAT+CGG | + | tig0046248:1222-1241 | Msa1466220:intergenic | 25.0% |
| !!! | ATTAATTTTGAAAGGTGGAA+TGG | - | tig0046248:1222-1241 | Msa1466220:intron | 25.0% |
| ! | ATCTTAACATTTCAAAGAAG+TGG | - | tig0046248:1441-1460 | Msa1466220:intron | 25.0% |
| ! | TCTTAACATTTCAAAGAAGT+GGG | - | tig0046248:1442-1461 | Msa1466220:intron | 25.0% |
| ! | GCTACAATTGTAAGTTAAAT+TGG | - | tig0046248:1950-1969 | Msa1466220:CDS | 25.0% |
| ! | GTTAAATTGGAACAAACTAT+TGG | - | tig0046248:1963-1982 | Msa1466220:CDS | 25.0% |
| AACGGTATATTTACTACTCA+TGG | + | tig0046248:289-308 | Msa1466220:intergenic | 30.0% | |
| TGAGTAGTAAATATACCGTT+TGG | - | tig0046248:289-308 | Msa1466220:CDS | 30.0% | |
| TTATATGGAACCAAAAACAC+TGG | + | tig0046248:315-334 | Msa1466220:intergenic | 30.0% | |
| ATCTTATCTATGATCATTCC+TGG | - | tig0046248:372-391 | Msa1466220:intron | 30.0% | |
| TTCCTTCAATTCATTCACAA+GGG | + | tig0046248:439-458 | Msa1466220:intergenic | 30.0% | |
| ATTCCTTCAATTCATTCACA+AGG | + | tig0046248:440-459 | Msa1466220:intergenic | 30.0% | |
| AGTCTAAATCTATGATTCCT+TGG | + | tig0046248:684-703 | Msa1466220:intergenic | 30.0% | |
| AAAGGATAAAACTCCAGATT+TGG | - | tig0046248:1067-1086 | Msa1466220:CDS | 30.0% | |
| AAGGATAAAACTCCAGATTT+GGG | - | tig0046248:1068-1087 | Msa1466220:CDS | 30.0% | |
| GATGTTGTTAACTTACCTAT+TGG | - | tig0046248:1090-1109 | Msa1466220:CDS | 30.0% | |
| ! | GAGCATTTTGTTCATCAAAT+GGG | + | tig0046248:1131-1150 | Msa1466220:intergenic | 30.0% |
| !! | TTCCGATTAATTTTGAAAGG+TGG | - | tig0046248:1217-1236 | Msa1466220:intron | 30.0% |
| ! | CAATTATCCTTGTATGCTTT+TGG | + | tig0046248:1261-1280 | Msa1466220:intergenic | 30.0% |
| TATATAATCGATCCAAAACC+AGG | - | tig0046248:1495-1514 | Msa1466220:CDS | 30.0% | |
| ATATAATCGATCCAAAACCA+GGG | - | tig0046248:1496-1515 | Msa1466220:CDS | 30.0% | |
| !! | ACAAACTATTGGTTTATGCA+TGG | - | tig0046248:1974-1993 | Msa1466220:CDS | 30.0% |
| TTTATGCATGGTTGTATATC+TGG | - | tig0046248:1986-2005 | Msa1466220:CDS | 30.0% | |
| CTAACAGGAACAAATTCAAA+CGG | - | tig0046248:2045-2064 | Msa1466220:CDS | 30.0% | |
| TAACAGGAACAAATTCAAAC+GGG | - | tig0046248:2046-2065 | Msa1466220:CDS | 30.0% | |
| ATTTCTCCGAATGATGTTAT+CGG | - | tig0046248:2100-2119 | Msa1466220:exon | 30.0% | |
| AACGGTATATTTACTACTCA+TGG | + | tig0046248:289-308 | Msa1466220:intergenic | 30.0% | |
| TGAGTAGTAAATATACCGTT+TGG | - | tig0046248:289-308 | Msa1466220:CDS | 30.0% | |
| TTATATGGAACCAAAAACAC+TGG | + | tig0046248:315-334 | Msa1466220:intergenic | 30.0% | |
| ATCTTATCTATGATCATTCC+TGG | - | tig0046248:372-391 | Msa1466220:intron | 30.0% | |
| TTCCTTCAATTCATTCACAA+GGG | + | tig0046248:439-458 | Msa1466220:intergenic | 30.0% | |
| ATTCCTTCAATTCATTCACA+AGG | + | tig0046248:440-459 | Msa1466220:intergenic | 30.0% | |
| AGTCTAAATCTATGATTCCT+TGG | + | tig0046248:684-703 | Msa1466220:intergenic | 30.0% | |
| AAAGGATAAAACTCCAGATT+TGG | - | tig0046248:1067-1086 | Msa1466220:CDS | 30.0% | |
| AAGGATAAAACTCCAGATTT+GGG | - | tig0046248:1068-1087 | Msa1466220:CDS | 30.0% | |
| GATGTTGTTAACTTACCTAT+TGG | - | tig0046248:1090-1109 | Msa1466220:CDS | 30.0% | |
| ! | GAGCATTTTGTTCATCAAAT+GGG | + | tig0046248:1131-1150 | Msa1466220:intergenic | 30.0% |
| !! | TTCCGATTAATTTTGAAAGG+TGG | - | tig0046248:1217-1236 | Msa1466220:intron | 30.0% |
| ! | CAATTATCCTTGTATGCTTT+TGG | + | tig0046248:1261-1280 | Msa1466220:intergenic | 30.0% |
| TATATAATCGATCCAAAACC+AGG | - | tig0046248:1495-1514 | Msa1466220:CDS | 30.0% | |
| ATATAATCGATCCAAAACCA+GGG | - | tig0046248:1496-1515 | Msa1466220:CDS | 30.0% | |
| !! | ACAAACTATTGGTTTATGCA+TGG | - | tig0046248:1974-1993 | Msa1466220:CDS | 30.0% |
| TTTATGCATGGTTGTATATC+TGG | - | tig0046248:1986-2005 | Msa1466220:CDS | 30.0% | |
| CTAACAGGAACAAATTCAAA+CGG | - | tig0046248:2045-2064 | Msa1466220:CDS | 30.0% | |
| TAACAGGAACAAATTCAAAC+GGG | - | tig0046248:2046-2065 | Msa1466220:CDS | 30.0% | |
| ATTTCTCCGAATGATGTTAT+CGG | - | tig0046248:2100-2119 | Msa1466220:exon | 30.0% | |
| ATGAACAATCTTTGCAGTCT+TGG | + | tig0046248:84-103 | Msa1038010:intergenic | 35.0% | |
| AAGACTGCAAAGATTGTTCA+TGG | - | tig0046248:83-102 | Msa1466220:CDS | 35.0% | |
| AGACTGCAAAGATTGTTCAT+GGG | - | tig0046248:84-103 | Msa1466220:CDS | 35.0% | |
| !!! | AGTGATGGTTTTAACCCTTT+TGG | - | tig0046248:261-280 | Msa1466220:CDS | 35.0% |
| !!! | GTGATGGTTTTAACCCTTTT+GGG | - | tig0046248:262-281 | Msa1466220:CDS | 35.0% |
| TTCCATATAATCTTCCTCCT+TGG | - | tig0046248:325-344 | Msa1466220:CDS | 35.0% | |
| ATCCAAGGAGGAAGATTATA+TGG | + | tig0046248:330-349 | Msa1466220:intergenic | 35.0% | |
| TCCTTCAATTCATTCACAAG+GGG | + | tig0046248:438-457 | Msa1466220:intergenic | 35.0% | |
| ! | TTGAAGGAATTATGGACTGA+TGG | - | tig0046248:450-469 | Msa1466220:intron | 35.0% |
| ! | GAATGATGTTGTGTTGTTCT+TGG | - | tig0046248:960-979 | Msa1466220:CDS | 35.0% |
| TGTATTGCAAAAGACCAACA+AGG | - | tig0046248:1036-1055 | Msa1466220:CDS | 35.0% | |
| AGTTAACAACATCCCAAATC+TGG | + | tig0046248:1083-1102 | Msa1466220:intergenic | 35.0% | |
| !! | GGAGCATTTTGTTCATCAAA+TGG | + | tig0046248:1132-1151 | Msa1466220:intergenic | 35.0% |
| GATGAACAAAATGCTCCATA+TGG | - | tig0046248:1135-1154 | Msa1466220:CDS | 35.0% | |
| TGAAAGGTGGAATGGAAAAA+CGG | - | tig0046248:1230-1249 | Msa1466220:intron | 35.0% | |
| TTGCTTTGCAACAGACTTAA+AGG | - | tig0046248:1278-1297 | Msa1466220:intron | 35.0% | |
| GATTGCAATATCTCTTTGCT+AGG | + | tig0046248:1424-1443 | Msa1466220:intergenic | 35.0% | |
| ! | TATAAGTTCATCCCTGGTTT+TGG | + | tig0046248:1510-1529 | Msa1466220:intergenic | 35.0% |
| CAAAATGAGCCCATTGAATT+CGG | + | tig0046248:1556-1575 | Msa1466220:intergenic | 35.0% | |
| ACCAGAAACACAGGTAAAAT+TGG | - | tig0046248:1592-1611 | Msa1466220:CDS | 35.0% | |
| ! | TCCAATTTTACCTGTGTTTC+TGG | + | tig0046248:1596-1615 | Msa1466220:intergenic | 35.0% |
| !! | CATCTTTCTGTTCTAGTTCT+TGG | - | tig0046248:1841-1860 | Msa1466220:CDS | 35.0% |
| !! | TCTGTTCTAGTTCTTGGAAA+TGG | - | tig0046248:1847-1866 | Msa1466220:CDS | 35.0% |
| !! | CTGTTCTAGTTCTTGGAAAT+GGG | - | tig0046248:1848-1867 | Msa1466220:CDS | 35.0% |
| AGGTATATTTCTCCACGATT+TGG | + | tig0046248:1881-1900 | Msa1466220:intergenic | 35.0% | |
| TTTGCAGATGACTCTTTATC+TGG | + | tig0046248:1917-1936 | Msa1466220:intergenic | 35.0% | |
| ! | CATGGTTGTATATCTGGTTT+AGG | - | tig0046248:1992-2011 | Msa1466220:CDS | 35.0% |
| !! | GTTTAGGCATGTTTTTGACT+TGG | - | tig0046248:2008-2027 | Msa1466220:CDS | 35.0% |
| ACTCTTCCGATAACATCATT+CGG | + | tig0046248:2109-2128 | Msa1466220:intergenic | 35.0% | |
| !! | ATGTTATCGGAAGAGTGTTT+GGG | - | tig0046248:2113-2132 | Msa1466220:five_prime_UTR | 35.0% |
| ATGAACAATCTTTGCAGTCT+TGG | + | tig0046248:84-103 | Msa1466220:intergenic | 35.0% | |
| AAGACTGCAAAGATTGTTCA+TGG | - | tig0046248:83-102 | Msa1466220:CDS | 35.0% | |
| AGACTGCAAAGATTGTTCAT+GGG | - | tig0046248:84-103 | Msa1466220:CDS | 35.0% | |
| !!! | AGTGATGGTTTTAACCCTTT+TGG | - | tig0046248:261-280 | Msa1466220:CDS | 35.0% |
| !!! | GTGATGGTTTTAACCCTTTT+GGG | - | tig0046248:262-281 | Msa1466220:CDS | 35.0% |
| TTCCATATAATCTTCCTCCT+TGG | - | tig0046248:325-344 | Msa1466220:CDS | 35.0% | |
| ATCCAAGGAGGAAGATTATA+TGG | + | tig0046248:330-349 | Msa1466220:intergenic | 35.0% | |
| TCCTTCAATTCATTCACAAG+GGG | + | tig0046248:438-457 | Msa1466220:intergenic | 35.0% | |
| ! | TTGAAGGAATTATGGACTGA+TGG | - | tig0046248:450-469 | Msa1466220:intron | 35.0% |
| ! | GAATGATGTTGTGTTGTTCT+TGG | - | tig0046248:960-979 | Msa1466220:CDS | 35.0% |
| TGTATTGCAAAAGACCAACA+AGG | - | tig0046248:1036-1055 | Msa1466220:CDS | 35.0% | |
| AGTTAACAACATCCCAAATC+TGG | + | tig0046248:1083-1102 | Msa1466220:intergenic | 35.0% | |
| !! | GGAGCATTTTGTTCATCAAA+TGG | + | tig0046248:1132-1151 | Msa1466220:intergenic | 35.0% |
| GATGAACAAAATGCTCCATA+TGG | - | tig0046248:1135-1154 | Msa1466220:CDS | 35.0% | |
| TGAAAGGTGGAATGGAAAAA+CGG | - | tig0046248:1230-1249 | Msa1466220:intron | 35.0% | |
| TTGCTTTGCAACAGACTTAA+AGG | - | tig0046248:1278-1297 | Msa1466220:intron | 35.0% | |
| GATTGCAATATCTCTTTGCT+AGG | + | tig0046248:1424-1443 | Msa1466220:intergenic | 35.0% | |
| ! | TATAAGTTCATCCCTGGTTT+TGG | + | tig0046248:1510-1529 | Msa1466220:intergenic | 35.0% |
| CAAAATGAGCCCATTGAATT+CGG | + | tig0046248:1556-1575 | Msa1466220:intergenic | 35.0% | |
| ACCAGAAACACAGGTAAAAT+TGG | - | tig0046248:1592-1611 | Msa1466220:CDS | 35.0% | |
| ! | TCCAATTTTACCTGTGTTTC+TGG | + | tig0046248:1596-1615 | Msa1466220:intergenic | 35.0% |
| !! | CATCTTTCTGTTCTAGTTCT+TGG | - | tig0046248:1841-1860 | Msa1466220:CDS | 35.0% |
| !! | TCTGTTCTAGTTCTTGGAAA+TGG | - | tig0046248:1847-1866 | Msa1466220:CDS | 35.0% |
| !! | CTGTTCTAGTTCTTGGAAAT+GGG | - | tig0046248:1848-1867 | Msa1466220:CDS | 35.0% |
| AGGTATATTTCTCCACGATT+TGG | + | tig0046248:1881-1900 | Msa1466220:intergenic | 35.0% | |
| TTTGCAGATGACTCTTTATC+TGG | + | tig0046248:1917-1936 | Msa1466220:intergenic | 35.0% | |
| ! | CATGGTTGTATATCTGGTTT+AGG | - | tig0046248:1992-2011 | Msa1466220:CDS | 35.0% |
| !! | GTTTAGGCATGTTTTTGACT+TGG | - | tig0046248:2008-2027 | Msa1466220:CDS | 35.0% |
| ACTCTTCCGATAACATCATT+CGG | + | tig0046248:2109-2128 | Msa1466220:intergenic | 35.0% | |
| !! | ATGTTATCGGAAGAGTGTTT+GGG | - | tig0046248:2113-2132 | Msa1466220:five_prime_UTR | 35.0% |
| AAACTGCAGAGCATATGAGA+TGG | - | tig0046248:112-131 | Msa1466220:CDS | 40.0% | |
| CTTCAGACACTAACAAGGAT+GGG | - | tig0046248:139-158 | Msa1466220:intron | 40.0% | |
| CCTCTGATCATCGAAATGTT+CGG | - | tig0046248:226-245 | Msa1466220:intron | 40.0% | |
| TGATCATCGAAATGTTCGGT+TGG | - | tig0046248:230-249 | Msa1466220:intron | 40.0% | |
| GATCATCGAAATGTTCGGTT+GGG | - | tig0046248:231-250 | Msa1466220:intron | 40.0% | |
| GGTTAAAACCATCACTAGAG+AGG | + | tig0046248:257-276 | Msa1466220:intergenic | 40.0% | |
| TACTACTCATGGTCCCAAAA+GGG | + | tig0046248:278-297 | Msa1466220:intergenic | 40.0% | |
| TTACTACTCATGGTCCCAAA+AGG | + | tig0046248:279-298 | Msa1466220:intergenic | 40.0% | |
| AACCAAAAACACTGGCCAAA+CGG | + | tig0046248:307-326 | Msa1466220:intergenic | 40.0% | |
| TGTTTCATACACATCCAAGG+AGG | + | tig0046248:342-361 | Msa1466220:intergenic | 40.0% | |
| GTGTGTTTCATACACATCCA+AGG | + | tig0046248:345-364 | Msa1466220:intergenic | 40.0% | |
| ACCCCTTGTGAATGAATTGA+AGG | - | tig0046248:434-453 | Msa1466220:intron | 40.0% | |
| TGGACAATTAGTGACTTTCC+TGG | - | tig0046248:531-550 | Msa1466220:intron | 40.0% | |
| ATTAGTGACTTTCCTGGTCT+AGG | - | tig0046248:537-556 | Msa1466220:intron | 40.0% | |
| ! | GTCTAGGTAATTTGTCTGGT+TGG | - | tig0046248:553-572 | Msa1466220:intron | 40.0% |
| TCGCATCCAAGTTACAAGTT+GGG | + | tig0046248:602-621 | Msa1466220:intergenic | 40.0% | |
| TTCGCATCCAAGTTACAAGT+TGG | + | tig0046248:603-622 | Msa1466220:intergenic | 40.0% | |
| !! | TCGTTTTGATGGAAACACAG+AGG | - | tig0046248:713-732 | Msa1466220:CDS | 40.0% |
| CATTGGACTGTTGATGCAAT+AGG | - | tig0046248:770-789 | Msa1466220:CDS | 40.0% | |
| ACAATCACACGTTCTCCAAT+AGG | + | tig0046248:1108-1127 | Msa1466220:intergenic | 40.0% | |
| GAAAGGTGGAATGGAAAAAC+GGG | - | tig0046248:1231-1250 | Msa1466220:intron | 40.0% | |
| GTGGTCATAAATTGGAATCG+AGG | + | tig0046248:1395-1414 | Msa1466220:intergenic | 40.0% | |
| GGTCTTCAGTGGTCATAAAT+TGG | + | tig0046248:1403-1422 | Msa1466220:intergenic | 40.0% | |
| ATGGTGTAGACCGAATTCAA+TGG | - | tig0046248:1543-1562 | Msa1466220:CDS | 40.0% | |
| TGGTGTAGACCGAATTCAAT+GGG | - | tig0046248:1544-1563 | Msa1466220:CDS | 40.0% | |
| ! | TCGTTTGAAACCAGAAACAC+AGG | - | tig0046248:1583-1602 | Msa1466220:CDS | 40.0% |
| CAAGCAAGTGATTCCTCATA+GGG | - | tig0046248:1716-1735 | Msa1466220:CDS | 40.0% | |
| AAGCAAGTGATTCCTCATAG+GGG | - | tig0046248:1717-1736 | Msa1466220:CDS | 40.0% | |
| TTCGAGGAAAAGACATGAGA+TGG | - | tig0046248:1755-1774 | Msa1466220:CDS | 40.0% | |
| ! | TGACTCTTTATCTGGTGGAT+GGG | + | tig0046248:1909-1928 | Msa1466220:intergenic | 40.0% |
| ATGACTCTTTATCTGGTGGA+TGG | + | tig0046248:1910-1929 | Msa1466220:intergenic | 40.0% | |
| ATCTGCAAATGATGCAGCAA+TGG | - | tig0046248:1928-1947 | Msa1466220:CDS | 40.0% | |
| GTGATCACTTGCATACTAAC+AGG | - | tig0046248:2030-2049 | Msa1466220:CDS | 40.0% | |
| !! | GATGTTATCGGAAGAGTGTT+TGG | - | tig0046248:2112-2131 | Msa1466220:five_prime_UTR | 40.0% |
| AAACTGCAGAGCATATGAGA+TGG | - | tig0046248:112-131 | Msa1466220:CDS | 40.0% | |
| CTTCAGACACTAACAAGGAT+GGG | - | tig0046248:139-158 | Msa1466220:intron | 40.0% | |
| CCTCTGATCATCGAAATGTT+CGG | - | tig0046248:226-245 | Msa1466220:intron | 40.0% | |
| TGATCATCGAAATGTTCGGT+TGG | - | tig0046248:230-249 | Msa1466220:intron | 40.0% | |
| GATCATCGAAATGTTCGGTT+GGG | - | tig0046248:231-250 | Msa1466220:intron | 40.0% | |
| GGTTAAAACCATCACTAGAG+AGG | + | tig0046248:257-276 | Msa1466220:intergenic | 40.0% | |
| TACTACTCATGGTCCCAAAA+GGG | + | tig0046248:278-297 | Msa1466220:intergenic | 40.0% | |
| TTACTACTCATGGTCCCAAA+AGG | + | tig0046248:279-298 | Msa1466220:intergenic | 40.0% | |
| AACCAAAAACACTGGCCAAA+CGG | + | tig0046248:307-326 | Msa1466220:intergenic | 40.0% | |
| TGTTTCATACACATCCAAGG+AGG | + | tig0046248:342-361 | Msa1466220:intergenic | 40.0% | |
| GTGTGTTTCATACACATCCA+AGG | + | tig0046248:345-364 | Msa1466220:intergenic | 40.0% | |
| ACCCCTTGTGAATGAATTGA+AGG | - | tig0046248:434-453 | Msa1466220:intron | 40.0% | |
| TGGACAATTAGTGACTTTCC+TGG | - | tig0046248:531-550 | Msa1466220:intron | 40.0% | |
| ATTAGTGACTTTCCTGGTCT+AGG | - | tig0046248:537-556 | Msa1466220:intron | 40.0% | |
| ! | GTCTAGGTAATTTGTCTGGT+TGG | - | tig0046248:553-572 | Msa1466220:intron | 40.0% |
| TCGCATCCAAGTTACAAGTT+GGG | + | tig0046248:602-621 | Msa1466220:intergenic | 40.0% | |
| TTCGCATCCAAGTTACAAGT+TGG | + | tig0046248:603-622 | Msa1466220:intergenic | 40.0% | |
| !! | TCGTTTTGATGGAAACACAG+AGG | - | tig0046248:713-732 | Msa1466220:CDS | 40.0% |
| CATTGGACTGTTGATGCAAT+AGG | - | tig0046248:770-789 | Msa1466220:CDS | 40.0% | |
| ACAATCACACGTTCTCCAAT+AGG | + | tig0046248:1108-1127 | Msa1466220:intergenic | 40.0% | |
| GAAAGGTGGAATGGAAAAAC+GGG | - | tig0046248:1231-1250 | Msa1466220:intron | 40.0% | |
| GTGGTCATAAATTGGAATCG+AGG | + | tig0046248:1395-1414 | Msa1466220:intergenic | 40.0% | |
| GGTCTTCAGTGGTCATAAAT+TGG | + | tig0046248:1403-1422 | Msa1466220:intergenic | 40.0% | |
| ATGGTGTAGACCGAATTCAA+TGG | - | tig0046248:1543-1562 | Msa1466220:CDS | 40.0% | |
| TGGTGTAGACCGAATTCAAT+GGG | - | tig0046248:1544-1563 | Msa1466220:CDS | 40.0% | |
| ! | TCGTTTGAAACCAGAAACAC+AGG | - | tig0046248:1583-1602 | Msa1466220:CDS | 40.0% |
| CAAGCAAGTGATTCCTCATA+GGG | - | tig0046248:1716-1735 | Msa1466220:CDS | 40.0% | |
| AAGCAAGTGATTCCTCATAG+GGG | - | tig0046248:1717-1736 | Msa1466220:CDS | 40.0% | |
| TTCGAGGAAAAGACATGAGA+TGG | - | tig0046248:1755-1774 | Msa1466220:CDS | 40.0% | |
| ! | TGACTCTTTATCTGGTGGAT+GGG | + | tig0046248:1909-1928 | Msa1466220:intergenic | 40.0% |
| ATGACTCTTTATCTGGTGGA+TGG | + | tig0046248:1910-1929 | Msa1466220:intergenic | 40.0% | |
| ATCTGCAAATGATGCAGCAA+TGG | - | tig0046248:1928-1947 | Msa1466220:CDS | 40.0% | |
| GTGATCACTTGCATACTAAC+AGG | - | tig0046248:2030-2049 | Msa1466220:CDS | 40.0% | |
| !! | GATGTTATCGGAAGAGTGTT+TGG | - | tig0046248:2112-2131 | Msa1466220:five_prime_UTR | 40.0% |
| !! | CTTTGCAGTCTTGGCTTTAG+TGG | + | tig0046248:75-94 | Msa1038010:intergenic | 45.0% |
| GCATGCTTCAGACACTAACA+AGG | - | tig0046248:134-153 | Msa1466220:intron | 45.0% | |
| GCTTCAGACACTAACAAGGA+TGG | - | tig0046248:138-157 | Msa1466220:intron | 45.0% | |
| !! | CTAACAAGGATGGGCTATTG+AGG | - | tig0046248:148-167 | Msa1466220:intron | 45.0% |
| CGATGATCAGAGGCAAATTC+AGG | + | tig0046248:219-238 | Msa1466220:intergenic | 45.0% | |
| CCGAACATTTCGATGATCAG+AGG | + | tig0046248:229-248 | Msa1466220:intergenic | 45.0% | |
| ! | TACCGTTTGGCCAGTGTTTT+TGG | - | tig0046248:302-321 | Msa1466220:CDS | 45.0% |
| TATGATCATTCCTGGTCCGA+CGG | - | tig0046248:380-399 | Msa1466220:intron | 45.0% | |
| !! | TTTTTATTTCCGGTCGCCGT+CGG | + | tig0046248:399-418 | Msa1466220:intergenic | 45.0% |
| ! | GGAATTATGGACTGATGGTG+TGG | - | tig0046248:455-474 | Msa1466220:intron | 45.0% |
| CCAGACAAATTACCTAGACC+AGG | + | tig0046248:552-571 | Msa1466220:intergenic | 45.0% | |
| ! | CCTGGTCTAGGTAATTTGTC+TGG | - | tig0046248:549-568 | Msa1466220:intron | 45.0% |
| TCTGGTTGGAACACACATAC+AGG | - | tig0046248:567-586 | Msa1466220:intron | 45.0% | |
| TTGGAACACACATACAGGCT+TGG | - | tig0046248:572-591 | Msa1466220:intron | 45.0% | |
| ! | CTGAATCGTGCTCGTTTTGA+TGG | - | tig0046248:702-721 | Msa1466220:CDS | 45.0% |
| GCATCAACAGTCCAATGTGA+CGG | + | tig0046248:767-786 | Msa1466220:intergenic | 45.0% | |
| ! | TAACTACACTTTCTGGCCTC+TGG | - | tig0046248:910-929 | Msa1466220:CDS | 45.0% |
| ACCAACAAGGAGCTACTGAA+AGG | - | tig0046248:1049-1068 | Msa1466220:CDS | 45.0% | |
| TCCTTTCAGTAGCTCCTTGT+TGG | + | tig0046248:1053-1072 | Msa1466220:intergenic | 45.0% | |
| AAGGCTTGTGCTTCACCATA+TGG | + | tig0046248:1153-1172 | Msa1466220:intergenic | 45.0% | |
| TCCACAATATCCTGCAAGCA+AGG | + | tig0046248:1172-1191 | Msa1466220:intergenic | 45.0% | |
| TCTCTTTGCTAGGTCTTCAG+TGG | + | tig0046248:1414-1433 | Msa1466220:intergenic | 45.0% | |
| CTGCGCATAGACAAACTATG+TGG | - | tig0046248:1465-1484 | Msa1466220:CDS | 45.0% | |
| GCTGCTTATAAGTTCATCCC+TGG | + | tig0046248:1516-1535 | Msa1466220:intergenic | 45.0% | |
| CTTATAAGCAGCGTTCCTGA+TGG | - | tig0046248:1524-1543 | Msa1466220:CDS | 45.0% | |
| TGAATTCGGTCTACACCATC+AGG | + | tig0046248:1542-1561 | Msa1466220:intergenic | 45.0% | |
| GCAAGCAAGTGATTCCTCAT+AGG | - | tig0046248:1715-1734 | Msa1466220:CDS | 45.0% | |
| !! | GTGGTTCTAAAGCTCTTTCG+AGG | - | tig0046248:1739-1758 | Msa1466220:CDS | 45.0% |
| ! | TATCTGGTGGATGGGTTTCA+AGG | + | tig0046248:1901-1920 | Msa1466220:intergenic | 45.0% |
| GCAGATGACTCTTTATCTGG+TGG | + | tig0046248:1914-1933 | Msa1466220:intergenic | 45.0% | |
| !! | CTTTGCAGTCTTGGCTTTAG+TGG | + | tig0046248:75-94 | Msa1466220:intergenic | 45.0% |
| GCATGCTTCAGACACTAACA+AGG | - | tig0046248:134-153 | Msa1466220:intron | 45.0% | |
| GCTTCAGACACTAACAAGGA+TGG | - | tig0046248:138-157 | Msa1466220:intron | 45.0% | |
| !! | CTAACAAGGATGGGCTATTG+AGG | - | tig0046248:148-167 | Msa1466220:intron | 45.0% |
| CGATGATCAGAGGCAAATTC+AGG | + | tig0046248:219-238 | Msa1466220:intergenic | 45.0% | |
| CCGAACATTTCGATGATCAG+AGG | + | tig0046248:229-248 | Msa1466220:intergenic | 45.0% | |
| ! | TACCGTTTGGCCAGTGTTTT+TGG | - | tig0046248:302-321 | Msa1466220:CDS | 45.0% |
| TATGATCATTCCTGGTCCGA+CGG | - | tig0046248:380-399 | Msa1466220:intron | 45.0% | |
| !! | TTTTTATTTCCGGTCGCCGT+CGG | + | tig0046248:399-418 | Msa1466220:intergenic | 45.0% |
| ! | GGAATTATGGACTGATGGTG+TGG | - | tig0046248:455-474 | Msa1466220:intron | 45.0% |
| CCAGACAAATTACCTAGACC+AGG | + | tig0046248:552-571 | Msa1466220:intergenic | 45.0% | |
| ! | CCTGGTCTAGGTAATTTGTC+TGG | - | tig0046248:549-568 | Msa1466220:intron | 45.0% |
| TCTGGTTGGAACACACATAC+AGG | - | tig0046248:567-586 | Msa1466220:intron | 45.0% | |
| TTGGAACACACATACAGGCT+TGG | - | tig0046248:572-591 | Msa1466220:intron | 45.0% | |
| ! | CTGAATCGTGCTCGTTTTGA+TGG | - | tig0046248:702-721 | Msa1466220:CDS | 45.0% |
| GCATCAACAGTCCAATGTGA+CGG | + | tig0046248:767-786 | Msa1466220:intergenic | 45.0% | |
| ! | TAACTACACTTTCTGGCCTC+TGG | - | tig0046248:910-929 | Msa1466220:CDS | 45.0% |
| ACCAACAAGGAGCTACTGAA+AGG | - | tig0046248:1049-1068 | Msa1466220:CDS | 45.0% | |
| TCCTTTCAGTAGCTCCTTGT+TGG | + | tig0046248:1053-1072 | Msa1466220:intergenic | 45.0% | |
| AAGGCTTGTGCTTCACCATA+TGG | + | tig0046248:1153-1172 | Msa1466220:intergenic | 45.0% | |
| TCCACAATATCCTGCAAGCA+AGG | + | tig0046248:1172-1191 | Msa1466220:intergenic | 45.0% | |
| TCTCTTTGCTAGGTCTTCAG+TGG | + | tig0046248:1414-1433 | Msa1466220:intergenic | 45.0% | |
| CTGCGCATAGACAAACTATG+TGG | - | tig0046248:1465-1484 | Msa1466220:CDS | 45.0% | |
| GCTGCTTATAAGTTCATCCC+TGG | + | tig0046248:1516-1535 | Msa1466220:intergenic | 45.0% | |
| CTTATAAGCAGCGTTCCTGA+TGG | - | tig0046248:1524-1543 | Msa1466220:CDS | 45.0% | |
| TGAATTCGGTCTACACCATC+AGG | + | tig0046248:1542-1561 | Msa1466220:intergenic | 45.0% | |
| GCAAGCAAGTGATTCCTCAT+AGG | - | tig0046248:1715-1734 | Msa1466220:CDS | 45.0% | |
| !! | GTGGTTCTAAAGCTCTTTCG+AGG | - | tig0046248:1739-1758 | Msa1466220:CDS | 45.0% |
| ! | TATCTGGTGGATGGGTTTCA+AGG | + | tig0046248:1901-1920 | Msa1466220:intergenic | 45.0% |
| GCAGATGACTCTTTATCTGG+TGG | + | tig0046248:1914-1933 | Msa1466220:intergenic | 45.0% | |
| GGCTTGCCCAACTTGTAACT+TGG | - | tig0046248:593-612 | Msa1466220:intron | 50.0% | |
| !! | GTCATCGTCGTTTTCTGCCA+AGG | - | tig0046248:664-683 | Msa1466220:CDS | 50.0% |
| TGACGGTGGATCACGATTGA+TGG | + | tig0046248:750-769 | Msa1466220:intergenic | 50.0% | |
| ATCGTGATCCACCGTCACAT+TGG | - | tig0046248:753-772 | Msa1466220:CDS | 50.0% | |
| TCAACAGTCCAATGTGACGG+TGG | + | tig0046248:764-783 | Msa1466220:intergenic | 50.0% | |
| CCTACGTTGCACAACATAGC+AGG | + | tig0046248:871-890 | Msa1466220:intergenic | 50.0% | |
| CCTGCTATGTTGTGCAACGT+AGG | - | tig0046248:868-887 | Msa1466220:intron | 50.0% | |
| GCCTTGCTTGCAGGATATTG+TGG | - | tig0046248:1168-1187 | Msa1466220:intron | 50.0% | |
| ! | GGGCATGCCAAAAGCATACA+AGG | - | tig0046248:1251-1270 | Msa1466220:intron | 50.0% |
| CAAGTGATTCCTCATAGGGG+TGG | - | tig0046248:1720-1739 | Msa1466220:CDS | 50.0% | |
| !! | GCTTTAGAACCACCCCTATG+AGG | + | tig0046248:1732-1751 | Msa1466220:intergenic | 50.0% |
| ATGGGACGACAACCAAATCG+TGG | - | tig0046248:1866-1885 | Msa1466220:CDS | 50.0% | |
| GGCTTGCCCAACTTGTAACT+TGG | - | tig0046248:593-612 | Msa1466220:intron | 50.0% | |
| !! | GTCATCGTCGTTTTCTGCCA+AGG | - | tig0046248:664-683 | Msa1466220:CDS | 50.0% |
| TGACGGTGGATCACGATTGA+TGG | + | tig0046248:750-769 | Msa1466220:intergenic | 50.0% | |
| ATCGTGATCCACCGTCACAT+TGG | - | tig0046248:753-772 | Msa1466220:CDS | 50.0% | |
| TCAACAGTCCAATGTGACGG+TGG | + | tig0046248:764-783 | Msa1466220:intergenic | 50.0% | |
| CCTACGTTGCACAACATAGC+AGG | + | tig0046248:871-890 | Msa1466220:intergenic | 50.0% | |
| CCTGCTATGTTGTGCAACGT+AGG | - | tig0046248:868-887 | Msa1466220:intron | 50.0% | |
| GCCTTGCTTGCAGGATATTG+TGG | - | tig0046248:1168-1187 | Msa1466220:intron | 50.0% | |
| ! | GGGCATGCCAAAAGCATACA+AGG | - | tig0046248:1251-1270 | Msa1466220:intron | 50.0% |
| CAAGTGATTCCTCATAGGGG+TGG | - | tig0046248:1720-1739 | Msa1466220:CDS | 50.0% | |
| !! | GCTTTAGAACCACCCCTATG+AGG | + | tig0046248:1732-1751 | Msa1466220:intergenic | 50.0% |
| ATGGGACGACAACCAAATCG+TGG | - | tig0046248:1866-1885 | Msa1466220:CDS | 50.0% | |
| ! | ATGGGCTATTGAGGCATCCG+AGG | - | tig0046248:157-176 | Msa1466220:intron | 55.0% |
| ! | TGGGCTATTGAGGCATCCGA+GGG | - | tig0046248:158-177 | Msa1466220:intron | 55.0% |
| ! | CTATTGAGGCATCCGAGGGA+TGG | - | tig0046248:162-181 | Msa1466220:intron | 55.0% |
| TTCCATGCCTCACCATCCCT+CGG | + | tig0046248:177-196 | Msa1466220:intergenic | 55.0% | |
| GAATGCGGGCAGCTCTTATG+TGG | - | tig0046248:511-530 | Msa1466220:intron | 55.0% | |
| CGGTGGATCACGATTGATGG+TGG | + | tig0046248:747-766 | Msa1466220:intergenic | 55.0% | |
| GAAGCACAAGCCTTGCTTGC+AGG | - | tig0046248:1159-1178 | Msa1466220:CDS | 55.0% | |
| ! | CTGAGCACTCTGGAAGAGTG+CGG | - | tig0046248:2137-2156 | Msa1466220:five_prime_UTR | 55.0% |
| ! | TCTGGAAGAGTGCGGTCCAT+GGG | - | tig0046248:2145-2164 | Msa1466220:five_prime_UTR | 55.0% |
| ! | ATGGGCTATTGAGGCATCCG+AGG | - | tig0046248:157-176 | Msa1466220:intron | 55.0% |
| ! | TGGGCTATTGAGGCATCCGA+GGG | - | tig0046248:158-177 | Msa1466220:intron | 55.0% |
| ! | CTATTGAGGCATCCGAGGGA+TGG | - | tig0046248:162-181 | Msa1466220:intron | 55.0% |
| TTCCATGCCTCACCATCCCT+CGG | + | tig0046248:177-196 | Msa1466220:intergenic | 55.0% | |
| GAATGCGGGCAGCTCTTATG+TGG | - | tig0046248:511-530 | Msa1466220:intron | 55.0% | |
| CGGTGGATCACGATTGATGG+TGG | + | tig0046248:747-766 | Msa1466220:intergenic | 55.0% | |
| GAAGCACAAGCCTTGCTTGC+AGG | - | tig0046248:1159-1178 | Msa1466220:CDS | 55.0% | |
| ! | CTGAGCACTCTGGAAGAGTG+CGG | - | tig0046248:2137-2156 | Msa1466220:five_prime_UTR | 55.0% |
| ! | TCTGGAAGAGTGCGGTCCAT+GGG | - | tig0046248:2145-2164 | Msa1466220:five_prime_UTR | 55.0% |
| ATCCGAGGGATGGTGAGGCA+TGG | - | tig0046248:172-191 | Msa1466220:intron | 60.0% | |
| CGGTTGGGCCTCTCTAGTGA+TGG | - | tig0046248:246-265 | Msa1466220:CDS | 60.0% | |
| GTGTTTGGGCCTGAGCACTC+TGG | - | tig0046248:2127-2146 | Msa1466220:five_prime_UTR | 60.0% | |
| ! | CGCACTCTTCCAGAGTGCTC+AGG | + | tig0046248:2139-2158 | Msa1466220:intergenic | 60.0% |
| ! | CTCTGGAAGAGTGCGGTCCA+TGG | - | tig0046248:2144-2163 | Msa1466220:five_prime_UTR | 60.0% |
| ATCCGAGGGATGGTGAGGCA+TGG | - | tig0046248:172-191 | Msa1466220:intron | 60.0% | |
| CGGTTGGGCCTCTCTAGTGA+TGG | - | tig0046248:246-265 | Msa1466220:CDS | 60.0% | |
| GTGTTTGGGCCTGAGCACTC+TGG | - | tig0046248:2127-2146 | Msa1466220:five_prime_UTR | 60.0% | |
| ! | CGCACTCTTCCAGAGTGCTC+AGG | + | tig0046248:2139-2158 | Msa1466220:intergenic | 60.0% |
| ! | CTCTGGAAGAGTGCGGTCCA+TGG | - | tig0046248:2144-2163 | Msa1466220:five_prime_UTR | 60.0% |
| ! | GAGGCATCCGAGGGATGGTG+AGG | - | tig0046248:167-186 | Msa1466220:intron | 65.0% |
| ATTCCTGGTCCGACGGCGAC+CGG | - | tig0046248:387-406 | Msa1466220:intron | 65.0% | |
| ! | GAGGCATCCGAGGGATGGTG+AGG | - | tig0046248:167-186 | Msa1466220:intron | 65.0% |
| ATTCCTGGTCCGACGGCGAC+CGG | - | tig0046248:387-406 | Msa1466220:intron | 65.0% | |
| TTTCCGGTCGCCGTCGGACC+AGG | + | tig0046248:393-412 | Msa1466220:intergenic | 70.0% | |
| TTTCCGGTCGCCGTCGGACC+AGG | + | tig0046248:393-412 | Msa1466220:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0046248 | gene | 31 | 2171 | 31 | ID=Msa1466220;Name=Msa1466220 |
| tig0046248 | mRNA | 31 | 2171 | 31 | ID=Msa1466220-mRNA-1;Parent=Msa1466220;Name=Msa1466220-mRNA-1;_AED=0.38;_eAED=0.38;_QI=71|0.25|0|0.6|1|0.8|5|0|456 |
| tig0046248 | exon | 1447 | 2171 | 1447 | ID=Msa1466220-mRNA-1:exon:25022;Parent=Msa1466220-mRNA-1 |
| tig0046248 | exon | 903 | 1181 | 903 | ID=Msa1466220-mRNA-1:exon:25021;Parent=Msa1466220-mRNA-1 |
| tig0046248 | exon | 598 | 810 | 598 | ID=Msa1466220-mRNA-1:exon:25020;Parent=Msa1466220-mRNA-1 |
| tig0046248 | exon | 244 | 345 | 244 | ID=Msa1466220-mRNA-1:exon:25019;Parent=Msa1466220-mRNA-1 |
| tig0046248 | exon | 31 | 150 | 31 | ID=Msa1466220-mRNA-1:exon:25018;Parent=Msa1466220-mRNA-1 |
| tig0046248 | five_prime_UTR | 2101 | 2171 | 2101 | ID=Msa1466220-mRNA-1:five_prime_utr;Parent=Msa1466220-mRNA-1 |
| tig0046248 | CDS | 1447 | 2100 | 1447 | ID=Msa1466220-mRNA-1:cds;Parent=Msa1466220-mRNA-1 |
| tig0046248 | CDS | 903 | 1181 | 903 | ID=Msa1466220-mRNA-1:cds;Parent=Msa1466220-mRNA-1 |
| tig0046248 | CDS | 598 | 810 | 598 | ID=Msa1466220-mRNA-1:cds;Parent=Msa1466220-mRNA-1 |
| tig0046248 | CDS | 244 | 345 | 244 | ID=Msa1466220-mRNA-1:cds;Parent=Msa1466220-mRNA-1 |
| tig0046248 | CDS | 31 | 150 | 31 | ID=Msa1466220-mRNA-1:cds;Parent=Msa1466220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
