AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169860 MtrunA17_Chr1g0186841 93.623 345 8 1 2 332 327 671 0.0 668
Msa0169860 MtrunA17_Chr1g0186851 57.227 339 132 2 7 332 331 669 2.35e-141 415
Msa0169860 MtrunA17_Chr1g0187041 54.412 340 139 4 1 325 326 664 2.69e-130 386
Msa0169860 MtrunA17_Chr1g0186911 54.006 337 141 3 1 324 226 561 1.71e-127 376
Msa0169860 MtrunA17_Chr1g0186861 54.006 337 141 3 1 324 328 663 3.01e-127 379
Msa0169860 MtrunA17_Chr1g0165791 36.011 361 200 9 1 331 326 685 9.91e-69 227
Msa0169860 MtrunA17_Chr7g0226571 31.720 372 195 8 7 324 345 711 2.31e-62 211
Msa0169860 MtrunA17_Chr1g0186981 36.236 356 194 10 7 329 313 668 1.11e-61 208
Msa0169860 MtrunA17_Chr1g0187001 33.240 358 204 10 7 332 290 644 1.69e-53 186
Msa0169860 MtrunA17_Chr1g0186991 32.861 353 197 11 7 323 318 666 2.59e-53 185
Msa0169860 MtrunA17_Chr8g0381301 31.183 372 193 12 7 323 340 703 2.07e-52 183
Msa0169860 MtrunA17_Chr3g0116601 30.411 365 199 11 7 322 346 704 2.60e-49 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169860 AT3G01680.1 31.688 385 190 13 7 325 353 730 3.18e-54 189
Msa0169860 AT3G01670.1 28.117 377 207 11 2 322 452 820 1.51e-37 142
Msa0169860 AT3G01670.2 28.117 377 207 11 2 322 476 844 1.66e-37 142
Msa0169860 AT1G67790.1 23.125 320 197 12 39 320 356 664 2.72e-21 95.1

Find 53 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCATCATCCATTGTAAA+TGG 0.156346 1_4:+53323774 None:intergenic
AAAACCTCGTAAGTCGATTT+TGG 0.196977 1_4:-53323054 Msa0169860:CDS
TTCCATTTGATCATGTCTTA+TGG 0.236485 1_4:-53323810 Msa0169860:CDS
CTTGAAATTCCTATTGTTGC+TGG 0.287322 1_4:-53322758 Msa0169860:CDS
ATGAACAATACAAGATTGTT+TGG 0.318857 1_4:-53324028 Msa0169860:CDS
CAATGCAAATGCAAAACATT+AGG 0.320284 1_4:-53322651 None:intergenic
AATGCAAATGCAAAACATTA+GGG 0.352870 1_4:-53322650 None:intergenic
TATCGAATTTCTTGCGTAGC+TGG 0.357781 1_4:+53323979 None:intergenic
TCAAGTTCATTAATGAAGAA+TGG 0.407316 1_4:-53323899 Msa0169860:CDS
GATCATGTCTTATGGAATCA+AGG 0.415650 1_4:-53323802 Msa0169860:CDS
TTTCATCATCCATTGTAAAT+GGG 0.417223 1_4:+53323775 None:intergenic
CTGTGGCTGAATTTGAGAAA+TGG 0.418335 1_4:-53322868 Msa0169860:CDS
GAATTCAGAAGGACAGGAAC+TGG 0.428024 1_4:-53323749 Msa0169860:CDS
TCCATGGTGCTAGGACAATC+AGG 0.433171 1_4:+53322710 None:intergenic
GGTAACTTTCCAGCAACAAT+AGG 0.436825 1_4:+53322749 None:intergenic
CAGCAACAATAGGAATTTCA+AGG 0.438861 1_4:+53322759 None:intergenic
CAAGTTCATTAATGAAGAAT+GGG 0.444482 1_4:-53323898 Msa0169860:CDS
GGATTCCAATCGTCGAAGAA+TGG 0.446974 1_4:-53324007 Msa0169860:CDS
TCGTTCCATTCTTCGACGAT+TGG 0.466028 1_4:+53324002 None:intergenic
TTCCATAAGACATGATCAAA+TGG 0.476560 1_4:+53323808 None:intergenic
AAAGATGTTGTTATCAAGAA+GGG 0.481066 1_4:-53322845 Msa0169860:CDS
GTTGGATCCATTCTTTGTCA+TGG 0.491940 1_4:+53323170 None:intergenic
ATGAAAATCTCCATGGTGCT+AGG 0.497376 1_4:+53322701 None:intergenic
GAAAGATGTTGTTATCAAGA+AGG 0.504611 1_4:-53322846 Msa0169860:CDS
AAATAAGAATTCAGAAGGAC+AGG 0.505393 1_4:-53323755 Msa0169860:CDS
ACGGCGGCCATGACAAAGAA+TGG 0.505835 1_4:-53323177 Msa0169860:CDS
CATTTGCATTGCTCTTGTTG+TGG 0.511127 1_4:+53322663 None:intergenic
CAGAATGTCGAAAACATAGC+TGG 0.516066 1_4:-53323924 Msa0169860:CDS
TGGCATACTTAGTGAACTGT+TGG 0.521596 1_4:+53323152 None:intergenic
CAAGGCTTTCCCATTTACAA+TGG 0.524969 1_4:-53323784 Msa0169860:CDS
TCTGTTGTGTTGAGTGGTCA+TGG 0.529738 1_4:-53322908 Msa0169860:CDS
TTTGTGGTGTTTAGTCCTCA+AGG 0.535506 1_4:-53323855 Msa0169860:CDS
TTGTGTTGCACCTTTCCTTG+AGG 0.539203 1_4:+53323840 None:intergenic
TGTTTCTACTCTAGATGTCA+CGG 0.542607 1_4:-53324099 Msa0169860:CDS
GAAAATGTGCTTGTTCTGCT+CGG 0.546825 1_4:+53323204 None:intergenic
ATGAGTGACACGAGCAACAC+TGG 0.552524 1_4:+53322793 None:intergenic
GTCAACATAGAAGAGTTCAA+TGG 0.556338 1_4:+53323087 None:intergenic
CAACAGATGGTCCTTTGCTA+AGG 0.567238 1_4:+53322924 None:intergenic
AACTTCTTGTGTCACTACAT+CGG 0.569484 1_4:+53322988 None:intergenic
TGATGAAATAAGAATTCAGA+AGG 0.583273 1_4:-53323760 Msa0169860:CDS
TGACCACTCAACACAACAGA+TGG 0.592856 1_4:+53322911 None:intergenic
CGCTCCAAAATCGACTTACG+AGG 0.601393 1_4:+53323050 None:intergenic
GGTGTTTAGTCCTCAAGGAA+AGG 0.602732 1_4:-53323850 Msa0169860:CDS
GAGTAAGATGCCATGGTATG+TGG 0.608793 1_4:-53323949 Msa0169860:CDS
TGAACTCTTCTATGTTGACA+AGG 0.614303 1_4:-53323083 Msa0169860:CDS
ATAGCTGATGAAAATCTCCA+TGG 0.615992 1_4:+53322694 None:intergenic
TCCTGATTGTCCTAGCACCA+TGG 0.635274 1_4:-53322711 Msa0169860:CDS
ACATTCTGCACCACATACCA+TGG 0.636446 1_4:+53323939 None:intergenic
GGTTGGGCTCTCCTTAGCAA+AGG 0.640640 1_4:-53322935 Msa0169860:CDS
TGCATCGTTTGCAAGAGCAG+TGG 0.641635 1_4:+53323132 None:intergenic
GGACCATCTGTTGTGTTGAG+TGG 0.654679 1_4:-53322914 Msa0169860:CDS
TACAACAATTCTCAAAACTG+TGG 0.669361 1_4:-53322885 Msa0169860:CDS
TTCTACTCTAGATGTCACGG+AGG 0.776640 1_4:-53324096 Msa0169860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTAATCAAAATTAAG+AGG + chr1_4:53322700-53322719 None:intergenic 15.0%
!!! TTACAATCATATTTTGATTT+TGG - chr1_4:53323462-53323481 Msa0169860:intron 15.0%
!! ACAAATTAATCAAAATTAAG+AGG + chr1_4:53322700-53322719 None:intergenic 15.0%
!!! TTACAATCATATTTTGATTT+TGG - chr1_4:53323462-53323481 Msa0169860:intron 15.0%
!! TTTCATGAAATTTACATGTT+TGG + chr1_4:53323342-53323361 None:intergenic 20.0%
!!! CAAACATAAATTTTTAGTCA+TGG + chr1_4:53323509-53323528 None:intergenic 20.0%
!! TTTCATGAAATTTACATGTT+TGG + chr1_4:53323342-53323361 None:intergenic 20.0%
!!! CAAACATAAATTTTTAGTCA+TGG + chr1_4:53323509-53323528 None:intergenic 20.0%
! ATGAACAATACAAGATTGTT+TGG - chr1_4:53322847-53322866 Msa0169860:CDS 25.0%
!! GCAAGAAATTCGATATTTTA+AGG - chr1_4:53322904-53322923 Msa0169860:CDS 25.0%
! TCAAGTTCATTAATGAAGAA+TGG - chr1_4:53322976-53322995 Msa0169860:CDS 25.0%
! CAAGTTCATTAATGAAGAAT+GGG - chr1_4:53322977-53322996 Msa0169860:CDS 25.0%
! TTTCATCATCCATTGTAAAT+GGG + chr1_4:53323103-53323122 None:intergenic 25.0%
! ATTTCATCATCCATTGTAAA+TGG + chr1_4:53323104-53323123 None:intergenic 25.0%
! TGATGAAATAAGAATTCAGA+AGG - chr1_4:53323115-53323134 Msa0169860:CDS 25.0%
! TTACAAAAATGAAACTGGTT+GGG - chr1_4:53323924-53323943 Msa0169860:CDS 25.0%
! AAAGATGTTGTTATCAAGAA+GGG - chr1_4:53324030-53324049 Msa0169860:CDS 25.0%
! ATGAACAATACAAGATTGTT+TGG - chr1_4:53322847-53322866 Msa0169860:CDS 25.0%
!! GCAAGAAATTCGATATTTTA+AGG - chr1_4:53322904-53322923 Msa0169860:CDS 25.0%
! TCAAGTTCATTAATGAAGAA+TGG - chr1_4:53322976-53322995 Msa0169860:CDS 25.0%
! CAAGTTCATTAATGAAGAAT+GGG - chr1_4:53322977-53322996 Msa0169860:CDS 25.0%
! TTTCATCATCCATTGTAAAT+GGG + chr1_4:53323103-53323122 None:intergenic 25.0%
! ATTTCATCATCCATTGTAAA+TGG + chr1_4:53323104-53323123 None:intergenic 25.0%
! TGATGAAATAAGAATTCAGA+AGG - chr1_4:53323115-53323134 Msa0169860:CDS 25.0%
! TTACAAAAATGAAACTGGTT+GGG - chr1_4:53323924-53323943 Msa0169860:CDS 25.0%
! AAAGATGTTGTTATCAAGAA+GGG - chr1_4:53324030-53324049 Msa0169860:CDS 25.0%
! TGTTAGCTTAATGCTTAGAA+TGG + chr1_4:53322671-53322690 None:intergenic 30.0%
!! ATTAATTTGTTAAACCGTGC+AGG - chr1_4:53322710-53322729 Msa0169860:CDS 30.0%
CAAAAAGAAGTCTATGTTTG+TGG - chr1_4:53323004-53323023 Msa0169860:CDS 30.0%
TTCCATTTGATCATGTCTTA+TGG - chr1_4:53323065-53323084 Msa0169860:CDS 30.0%
TTCCATAAGACATGATCAAA+TGG + chr1_4:53323070-53323089 None:intergenic 30.0%
AAATAAGAATTCAGAAGGAC+AGG - chr1_4:53323120-53323139 Msa0169860:CDS 30.0%
TTAACCACAACATTTCCATA+TGG - chr1_4:53323171-53323190 Msa0169860:CDS 30.0%
TAACCACAACATTTCCATAT+GGG - chr1_4:53323172-53323191 Msa0169860:CDS 30.0%
CGAAAATTTACTTACCCATA+TGG + chr1_4:53323189-53323208 None:intergenic 30.0%
! TGTAAAGACCGTTGAATTTT+GGG - chr1_4:53323248-53323267 Msa0169860:intron 30.0%
! AACAAGCACATTTTCTTCTA+CGG - chr1_4:53323679-53323698 Msa0169860:intron 30.0%
!! ATCGGTTGTTTTGTGAATTT+TGG + chr1_4:53323872-53323891 None:intergenic 30.0%
CTGTCTTACAAAAATGAAAC+TGG - chr1_4:53323919-53323938 Msa0169860:CDS 30.0%
CTTACAAAAATGAAACTGGT+TGG - chr1_4:53323923-53323942 Msa0169860:CDS 30.0%
TACAACAATTCTCAAAACTG+TGG - chr1_4:53323990-53324009 Msa0169860:CDS 30.0%
GAAAGATGTTGTTATCAAGA+AGG - chr1_4:53324029-53324048 Msa0169860:CDS 30.0%
! TGTTAGCTTAATGCTTAGAA+TGG + chr1_4:53322671-53322690 None:intergenic 30.0%
!! ATTAATTTGTTAAACCGTGC+AGG - chr1_4:53322710-53322729 Msa0169860:CDS 30.0%
CAAAAAGAAGTCTATGTTTG+TGG - chr1_4:53323004-53323023 Msa0169860:CDS 30.0%
TTCCATTTGATCATGTCTTA+TGG - chr1_4:53323065-53323084 Msa0169860:CDS 30.0%
TTCCATAAGACATGATCAAA+TGG + chr1_4:53323070-53323089 None:intergenic 30.0%
AAATAAGAATTCAGAAGGAC+AGG - chr1_4:53323120-53323139 Msa0169860:CDS 30.0%
TTAACCACAACATTTCCATA+TGG - chr1_4:53323171-53323190 Msa0169860:CDS 30.0%
TAACCACAACATTTCCATAT+GGG - chr1_4:53323172-53323191 Msa0169860:CDS 30.0%
CGAAAATTTACTTACCCATA+TGG + chr1_4:53323189-53323208 None:intergenic 30.0%
! TGTAAAGACCGTTGAATTTT+GGG - chr1_4:53323248-53323267 Msa0169860:intron 30.0%
! AACAAGCACATTTTCTTCTA+CGG - chr1_4:53323679-53323698 Msa0169860:intron 30.0%
!! ATCGGTTGTTTTGTGAATTT+TGG + chr1_4:53323872-53323891 None:intergenic 30.0%
CTGTCTTACAAAAATGAAAC+TGG - chr1_4:53323919-53323938 Msa0169860:CDS 30.0%
CTTACAAAAATGAAACTGGT+TGG - chr1_4:53323923-53323942 Msa0169860:CDS 30.0%
TACAACAATTCTCAAAACTG+TGG - chr1_4:53323990-53324009 Msa0169860:CDS 30.0%
GAAAGATGTTGTTATCAAGA+AGG - chr1_4:53324029-53324048 Msa0169860:CDS 30.0%
AACATTAATGTCAACCTGCA+CGG + chr1_4:53322727-53322746 None:intergenic 35.0%
! TGTTTCTACTCTAGATGTCA+CGG - chr1_4:53322776-53322795 Msa0169860:CDS 35.0%
!! TTTTAAGGAGTAAGATGCCA+TGG - chr1_4:53322919-53322938 Msa0169860:CDS 35.0%
GATCATGTCTTATGGAATCA+AGG - chr1_4:53323073-53323092 Msa0169860:CDS 35.0%
AACTGGATTGTATCTGTTGT+AGG - chr1_4:53323143-53323162 Msa0169860:CDS 35.0%
TTACCCATATGGAAATGTTG+TGG + chr1_4:53323178-53323197 None:intergenic 35.0%
! GGGTAAGTAAATTTTCGACT+TGG - chr1_4:53323192-53323211 Msa0169860:CDS 35.0%
AACAACATACTTCACAACTG+TGG + chr1_4:53323223-53323242 None:intergenic 35.0%
! GTGTAAAGACCGTTGAATTT+TGG - chr1_4:53323247-53323266 Msa0169860:intron 35.0%
GCTTCTCTCTTTAAATCTCA+CGG - chr1_4:53323289-53323308 Msa0169860:intron 35.0%
TTACAACTTCAGCAGATAGA+CGG - chr1_4:53323315-53323334 Msa0169860:intron 35.0%
GTCAACATAGAAGAGTTCAA+TGG + chr1_4:53323791-53323810 None:intergenic 35.0%
TGAACTCTTCTATGTTGACA+AGG - chr1_4:53323792-53323811 Msa0169860:CDS 35.0%
!! AAAACCTCGTAAGTCGATTT+TGG - chr1_4:53323821-53323840 Msa0169860:CDS 35.0%
! AACTTCTTGTGTCACTACAT+CGG + chr1_4:53323890-53323909 None:intergenic 35.0%
CAGCAACAATAGGAATTTCA+AGG + chr1_4:53324119-53324138 None:intergenic 35.0%
CTTGAAATTCCTATTGTTGC+TGG - chr1_4:53324117-53324136 Msa0169860:CDS 35.0%
! TCAGGACATTTTATAGTCTC+AGG + chr1_4:53324150-53324169 None:intergenic 35.0%
ATAGCTGATGAAAATCTCCA+TGG + chr1_4:53324184-53324203 None:intergenic 35.0%
AACATTAATGTCAACCTGCA+CGG + chr1_4:53322727-53322746 None:intergenic 35.0%
! TGTTTCTACTCTAGATGTCA+CGG - chr1_4:53322776-53322795 Msa0169860:CDS 35.0%
!! TTTTAAGGAGTAAGATGCCA+TGG - chr1_4:53322919-53322938 Msa0169860:CDS 35.0%
GATCATGTCTTATGGAATCA+AGG - chr1_4:53323073-53323092 Msa0169860:CDS 35.0%
AACTGGATTGTATCTGTTGT+AGG - chr1_4:53323143-53323162 Msa0169860:CDS 35.0%
TTACCCATATGGAAATGTTG+TGG + chr1_4:53323178-53323197 None:intergenic 35.0%
! GGGTAAGTAAATTTTCGACT+TGG - chr1_4:53323192-53323211 Msa0169860:CDS 35.0%
AACAACATACTTCACAACTG+TGG + chr1_4:53323223-53323242 None:intergenic 35.0%
! GTGTAAAGACCGTTGAATTT+TGG - chr1_4:53323247-53323266 Msa0169860:intron 35.0%
GCTTCTCTCTTTAAATCTCA+CGG - chr1_4:53323289-53323308 Msa0169860:intron 35.0%
TTACAACTTCAGCAGATAGA+CGG - chr1_4:53323315-53323334 Msa0169860:intron 35.0%
GTCAACATAGAAGAGTTCAA+TGG + chr1_4:53323791-53323810 None:intergenic 35.0%
TGAACTCTTCTATGTTGACA+AGG - chr1_4:53323792-53323811 Msa0169860:CDS 35.0%
!! AAAACCTCGTAAGTCGATTT+TGG - chr1_4:53323821-53323840 Msa0169860:CDS 35.0%
! AACTTCTTGTGTCACTACAT+CGG + chr1_4:53323890-53323909 None:intergenic 35.0%
CAGCAACAATAGGAATTTCA+AGG + chr1_4:53324119-53324138 None:intergenic 35.0%
CTTGAAATTCCTATTGTTGC+TGG - chr1_4:53324117-53324136 Msa0169860:CDS 35.0%
! TCAGGACATTTTATAGTCTC+AGG + chr1_4:53324150-53324169 None:intergenic 35.0%
ATAGCTGATGAAAATCTCCA+TGG + chr1_4:53324184-53324203 None:intergenic 35.0%
TATCGAATTTCTTGCGTAGC+TGG + chr1_4:53322899-53322918 None:intergenic 40.0%
CAGAATGTCGAAAACATAGC+TGG - chr1_4:53322951-53322970 Msa0169860:CDS 40.0%
TTTGTGGTGTTTAGTCCTCA+AGG - chr1_4:53323020-53323039 Msa0169860:CDS 40.0%
CAAGGCTTTCCCATTTACAA+TGG - chr1_4:53323091-53323110 Msa0169860:CDS 40.0%
AACATACTTCACAACTGTGG+AGG + chr1_4:53323220-53323239 None:intergenic 40.0%
GTTGTGAAGTATGTTGTTGC+AGG - chr1_4:53323225-53323244 Msa0169860:intron 40.0%
GCTTCTCTCCCAAAATTCAA+CGG + chr1_4:53323259-53323278 None:intergenic 40.0%
GTCTATCTGCTGAAGTTGTA+AGG + chr1_4:53323316-53323335 None:intergenic 40.0%
GAAAATGTGCTTGTTCTGCT+CGG + chr1_4:53323674-53323693 None:intergenic 40.0%
! AAGCACATTTTCTTCTACGG+CGG - chr1_4:53323682-53323701 Msa0169860:intron 40.0%
GTTGGATCCATTCTTTGTCA+TGG + chr1_4:53323708-53323727 None:intergenic 40.0%
TGGCATACTTAGTGAACTGT+TGG + chr1_4:53323726-53323745 None:intergenic 40.0%
CTGTGGCTGAATTTGAGAAA+TGG - chr1_4:53324007-53324026 Msa0169860:CDS 40.0%
GGTAACTTTCCAGCAACAAT+AGG + chr1_4:53324129-53324148 None:intergenic 40.0%
ATGAAAATCTCCATGGTGCT+AGG + chr1_4:53324177-53324196 None:intergenic 40.0%
CATTTGCATTGCTCTTGTTG+TGG + chr1_4:53324215-53324234 None:intergenic 40.0%
TATCGAATTTCTTGCGTAGC+TGG + chr1_4:53322899-53322918 None:intergenic 40.0%
CAGAATGTCGAAAACATAGC+TGG - chr1_4:53322951-53322970 Msa0169860:CDS 40.0%
TTTGTGGTGTTTAGTCCTCA+AGG - chr1_4:53323020-53323039 Msa0169860:CDS 40.0%
CAAGGCTTTCCCATTTACAA+TGG - chr1_4:53323091-53323110 Msa0169860:CDS 40.0%
AACATACTTCACAACTGTGG+AGG + chr1_4:53323220-53323239 None:intergenic 40.0%
GTTGTGAAGTATGTTGTTGC+AGG - chr1_4:53323225-53323244 Msa0169860:intron 40.0%
GCTTCTCTCCCAAAATTCAA+CGG + chr1_4:53323259-53323278 None:intergenic 40.0%
GTCTATCTGCTGAAGTTGTA+AGG + chr1_4:53323316-53323335 None:intergenic 40.0%
GAAAATGTGCTTGTTCTGCT+CGG + chr1_4:53323674-53323693 None:intergenic 40.0%
! AAGCACATTTTCTTCTACGG+CGG - chr1_4:53323682-53323701 Msa0169860:intron 40.0%
GTTGGATCCATTCTTTGTCA+TGG + chr1_4:53323708-53323727 None:intergenic 40.0%
TGGCATACTTAGTGAACTGT+TGG + chr1_4:53323726-53323745 None:intergenic 40.0%
CTGTGGCTGAATTTGAGAAA+TGG - chr1_4:53324007-53324026 Msa0169860:CDS 40.0%
GGTAACTTTCCAGCAACAAT+AGG + chr1_4:53324129-53324148 None:intergenic 40.0%
ATGAAAATCTCCATGGTGCT+AGG + chr1_4:53324177-53324196 None:intergenic 40.0%
CATTTGCATTGCTCTTGTTG+TGG + chr1_4:53324215-53324234 None:intergenic 40.0%
TTCTACTCTAGATGTCACGG+AGG - chr1_4:53322779-53322798 Msa0169860:CDS 45.0%
GGATTCCAATCGTCGAAGAA+TGG - chr1_4:53322868-53322887 Msa0169860:CDS 45.0%
TCGTTCCATTCTTCGACGAT+TGG + chr1_4:53322876-53322895 None:intergenic 45.0%
GAGTAAGATGCCATGGTATG+TGG - chr1_4:53322926-53322945 Msa0169860:CDS 45.0%
ACATTCTGCACCACATACCA+TGG + chr1_4:53322939-53322958 None:intergenic 45.0%
GGTGTTTAGTCCTCAAGGAA+AGG - chr1_4:53323025-53323044 Msa0169860:CDS 45.0%
TTGTGTTGCACCTTTCCTTG+AGG + chr1_4:53323038-53323057 None:intergenic 45.0%
GAATTCAGAAGGACAGGAAC+TGG - chr1_4:53323126-53323145 Msa0169860:CDS 45.0%
! TGGGAGAGAAGCGATTTTAG+TGG - chr1_4:53323267-53323286 Msa0169860:intron 45.0%
TTCTGCTCGGTCTGCATTAT+AGG + chr1_4:53323661-53323680 None:intergenic 45.0%
!! CTCGTAAGTCGATTTTGGAG+CGG - chr1_4:53323826-53323845 Msa0169860:CDS 45.0%
CAACAGATGGTCCTTTGCTA+AGG + chr1_4:53323954-53323973 None:intergenic 45.0%
TGACCACTCAACACAACAGA+TGG + chr1_4:53323967-53323986 None:intergenic 45.0%
TCTGTTGTGTTGAGTGGTCA+TGG - chr1_4:53323967-53323986 Msa0169860:CDS 45.0%
TTCTACTCTAGATGTCACGG+AGG - chr1_4:53322779-53322798 Msa0169860:CDS 45.0%
GGATTCCAATCGTCGAAGAA+TGG - chr1_4:53322868-53322887 Msa0169860:CDS 45.0%
TCGTTCCATTCTTCGACGAT+TGG + chr1_4:53322876-53322895 None:intergenic 45.0%
GAGTAAGATGCCATGGTATG+TGG - chr1_4:53322926-53322945 Msa0169860:CDS 45.0%
ACATTCTGCACCACATACCA+TGG + chr1_4:53322939-53322958 None:intergenic 45.0%
GGTGTTTAGTCCTCAAGGAA+AGG - chr1_4:53323025-53323044 Msa0169860:CDS 45.0%
TTGTGTTGCACCTTTCCTTG+AGG + chr1_4:53323038-53323057 None:intergenic 45.0%
GAATTCAGAAGGACAGGAAC+TGG - chr1_4:53323126-53323145 Msa0169860:CDS 45.0%
! TGGGAGAGAAGCGATTTTAG+TGG - chr1_4:53323267-53323286 Msa0169860:intron 45.0%
TTCTGCTCGGTCTGCATTAT+AGG + chr1_4:53323661-53323680 None:intergenic 45.0%
!! CTCGTAAGTCGATTTTGGAG+CGG - chr1_4:53323826-53323845 Msa0169860:CDS 45.0%
CAACAGATGGTCCTTTGCTA+AGG + chr1_4:53323954-53323973 None:intergenic 45.0%
TGACCACTCAACACAACAGA+TGG + chr1_4:53323967-53323986 None:intergenic 45.0%
TCTGTTGTGTTGAGTGGTCA+TGG - chr1_4:53323967-53323986 Msa0169860:CDS 45.0%
TGCATCGTTTGCAAGAGCAG+TGG + chr1_4:53323746-53323765 None:intergenic 50.0%
! CGCTCCAAAATCGACTTACG+AGG + chr1_4:53323828-53323847 None:intergenic 50.0%
GGACCATCTGTTGTGTTGAG+TGG - chr1_4:53323961-53323980 Msa0169860:CDS 50.0%
ATGAGTGACACGAGCAACAC+TGG + chr1_4:53324085-53324104 None:intergenic 50.0%
TCCTGATTGTCCTAGCACCA+TGG - chr1_4:53324164-53324183 Msa0169860:intron 50.0%
! TCCATGGTGCTAGGACAATC+AGG + chr1_4:53324168-53324187 None:intergenic 50.0%
TGCATCGTTTGCAAGAGCAG+TGG + chr1_4:53323746-53323765 None:intergenic 50.0%
! CGCTCCAAAATCGACTTACG+AGG + chr1_4:53323828-53323847 None:intergenic 50.0%
GGACCATCTGTTGTGTTGAG+TGG - chr1_4:53323961-53323980 Msa0169860:CDS 50.0%
ATGAGTGACACGAGCAACAC+TGG + chr1_4:53324085-53324104 None:intergenic 50.0%
TCCTGATTGTCCTAGCACCA+TGG - chr1_4:53324164-53324183 Msa0169860:intron 50.0%
! TCCATGGTGCTAGGACAATC+AGG + chr1_4:53324168-53324187 None:intergenic 50.0%
ACGGCGGCCATGACAAAGAA+TGG - chr1_4:53323698-53323717 Msa0169860:intron 55.0%
GGTTGGGCTCTCCTTAGCAA+AGG - chr1_4:53323940-53323959 Msa0169860:CDS 55.0%
ACGGCGGCCATGACAAAGAA+TGG - chr1_4:53323698-53323717 Msa0169860:intron 55.0%
GGTTGGGCTCTCCTTAGCAA+AGG - chr1_4:53323940-53323959 Msa0169860:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 53322652 53324245 53322652 ID=Msa0169860;Name=Msa0169860
chr1_4 mRNA 53322652 53324245 53322652 ID=Msa0169860-mRNA-1;Parent=Msa0169860;Name=Msa0169860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.66|1|1|3|0|332
chr1_4 exon 53324243 53324245 53324243 ID=Msa0169860-mRNA-1:exon:15883;Parent=Msa0169860-mRNA-1
chr1_4 exon 53323746 53324165 53323746 ID=Msa0169860-mRNA-1:exon:15882;Parent=Msa0169860-mRNA-1
chr1_4 exon 53322652 53323227 53322652 ID=Msa0169860-mRNA-1:exon:15881;Parent=Msa0169860-mRNA-1
chr1_4 CDS 53324243 53324245 53324243 ID=Msa0169860-mRNA-1:cds;Parent=Msa0169860-mRNA-1
chr1_4 CDS 53323746 53324165 53323746 ID=Msa0169860-mRNA-1:cds;Parent=Msa0169860-mRNA-1
chr1_4 CDS 53322652 53323227 53322652 ID=Msa0169860-mRNA-1:cds;Parent=Msa0169860-mRNA-1
Gene Sequence

>Msa0169860

ATGGTTGACATTAATGTTGTGCTGAAAAAGAAGAACGTGTACTTGTTTGTTTCTACTCTAGATGTCACGGAGGAAGATATTACAGAAGTAAGATCAGTGTATGAATCTATCAAAACAAATGAACAATACAAGATTGTTTGGATTCCAATCGTCGAAGAATGGAACGACCAGCTACGCAAGAAATTCGATATTTTAAGGAGTAAGATGCCATGGTATGTGGTGCAGAATGTCGAAAACATAGCTGGATTCAAGTTCATTAATGAAGAATGGGACTTCAAAAAGAAGTCTATGTTTGTGGTGTTTAGTCCTCAAGGAAAGGTGCAACACAAAAATGCATTCCATTTGATCATGTCTTATGGAATCAAGGCTTTCCCATTTACAATGGATGATGAAATAAGAATTCAGAAGGACAGGAACTGGATTACCGAGCAGAACAAGCACATTTTCTTCTACGGCGGCCATGACAAAGAATGGATCCAACAGTTCACTAAGTATGCCACTGCTCTTGCAAACGATGCAACTATAAAAGAAGCAAAAATTTCCATTGAACTCTTCTATGTTGACAAGGAAGACAAAAACCTCGTAAGTCGATTTTGGAGCGGAATTGAGAGTCTCTTTGTGACCAAAATTCACAAAACAACCGATGTAGTGACACAAGAAGTTCAAAAGATGCTGTCTTACAAAAATGAAACTGGTTGGGCTCTCCTTAGCAAAGGACCATCTGTTGTGTTGAGTGGTCATGGTACAACAATTCTCAAAACTGTGGCTGAATTTGAGAAATGGAAAGATGTTGTTATCAAGAAGGGATTTGAGTTTGCATTCACTGAGTATCACACCAGTGTTGCTCGTGTCACTCATCGTTGCTCGCACCTTGAAATTCCTATTGTTGCTGGAAAGTTACCTGAGACTATAAAATGTCCTGATTGTCCTAGCACCATGGAGATTTTCATCAGCTATAAGTGTTGCCACAACAAGAGCAATGCAAATGCAAAACATTAG

Protein sequence

>Msa0169860

MVDINVVLKKKNVYLFVSTLDVTEEDITEVRSVYESIKTNEQYKIVWIPIVEEWNDQLRKKFDILRSKMPWYVVQNVENIAGFKFINEEWDFKKKSMFVVFSPQGKVQHKNAFHLIMSYGIKAFPFTMDDEIRIQKDRNWITEQNKHIFFYGGHDKEWIQQFTKYATALANDATIKEAKISIELFYVDKEDKNLVSRFWSGIESLFVTKIHKTTDVVTQEVQKMLSYKNETGWALLSKGPSVVLSGHGTTILKTVAEFEKWKDVVIKKGFEFAFTEYHTSVARVTHRCSHLEIPIVAGKLPETIKCPDCPSTMEIFISYKCCHNKSNANAKH*