Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0903390 | KEH16188.1 | 81.720 | 93 | 12 | 3 | 1 | 88 | 1 | 93 | 6.67e-39 | 138 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007990 | Msa0903390 | 0.818901 | 1.538548e-52 | -8.615850e-47 |
Msa0026910 | Msa0903390 | 0.815119 | 1.088658e-51 | -8.615850e-47 |
Msa0031180 | Msa0903390 | 0.821404 | 4.110937e-53 | -8.615850e-47 |
Msa0040620 | Msa0903390 | 0.813589 | 2.371527e-51 | -8.615850e-47 |
Msa0042550 | Msa0903390 | 0.827609 | 1.423620e-54 | -8.615850e-47 |
Msa0045790 | Msa0903390 | 0.808086 | 3.681448e-50 | -8.615850e-47 |
Msa0054820 | Msa0903390 | 0.820628 | 6.202543e-53 | -8.615850e-47 |
Msa0056450 | Msa0903390 | 0.803890 | 2.809439e-49 | -8.615850e-47 |
Msa0058600 | Msa0903390 | 0.819214 | 1.306244e-52 | -8.615850e-47 |
Msa0064110 | Msa0903390 | 0.838699 | 2.462602e-57 | -8.615850e-47 |
Msa0076700 | Msa0903390 | 0.802486 | 5.484731e-49 | -8.615850e-47 |
Msa0077450 | Msa0903390 | 0.806535 | 7.847681e-50 | -8.615850e-47 |
Msa0078480 | Msa0903390 | 0.812383 | 4.358816e-51 | -8.615850e-47 |
Msa0092410 | Msa0903390 | 0.800533 | 1.378057e-48 | -8.615850e-47 |
Msa0092440 | Msa0903390 | 0.801734 | 7.829928e-49 | -8.615850e-47 |
Msa0100160 | Msa0903390 | 0.814711 | 1.340205e-51 | -8.615850e-47 |
Msa0103250 | Msa0903390 | 0.829079 | 6.290510e-55 | -8.615850e-47 |
Msa0114430 | Msa0903390 | 0.805532 | 1.275941e-49 | -8.615850e-47 |
Msa0610670 | Msa0903390 | 0.808892 | 2.476989e-50 | -8.615850e-47 |
Msa0613440 | Msa0903390 | 0.804060 | 2.589575e-49 | -8.615850e-47 |
Msa0615010 | Msa0903390 | 0.825073 | 5.719524e-54 | -8.615850e-47 |
Msa0615220 | Msa0903390 | 0.817610 | 3.016212e-52 | -8.615850e-47 |
Msa0622170 | Msa0903390 | -0.806653 | 7.409032e-50 | -8.615850e-47 |
Msa0626990 | Msa0903390 | 0.805670 | 1.193367e-49 | -8.615850e-47 |
Msa0627350 | Msa0903390 | 0.808278 | 3.350196e-50 | -8.615850e-47 |
Msa0636020 | Msa0903390 | 0.804492 | 2.104507e-49 | -8.615850e-47 |
Msa0645970 | Msa0903390 | 0.801063 | 1.074195e-48 | -8.615850e-47 |
Msa0661320 | Msa0903390 | 0.814194 | 1.744404e-51 | -8.615850e-47 |
Msa0685750 | Msa0903390 | 0.817068 | 3.994890e-52 | -8.615850e-47 |
Msa0687280 | Msa0903390 | 0.823045 | 1.711186e-53 | -8.615850e-47 |
Msa0688070 | Msa0903390 | 0.830712 | 2.517206e-55 | -8.615850e-47 |
Msa0695870 | Msa0903390 | 0.801950 | 7.068879e-49 | -8.615850e-47 |
Msa0696540 | Msa0903390 | 0.803439 | 3.484434e-49 | -8.615850e-47 |
Msa0703780 | Msa0903390 | 0.802245 | 6.146944e-49 | -8.615850e-47 |
Msa0704920 | Msa0903390 | 0.818559 | 1.840022e-52 | -8.615850e-47 |
Msa0715410 | Msa0903390 | 0.808193 | 3.492238e-50 | -8.615850e-47 |
Msa0721340 | Msa0903390 | 0.838231 | 3.251054e-57 | -8.615850e-47 |
Msa0731940 | Msa0903390 | 0.806375 | 8.479862e-50 | -8.615850e-47 |
Msa0741070 | Msa0903390 | 0.835169 | 1.961945e-56 | -8.615850e-47 |
Msa0748730 | Msa0903390 | 0.801055 | 1.078478e-48 | -8.615850e-47 |
Msa0760130 | Msa0903390 | 0.802690 | 4.976986e-49 | -8.615850e-47 |
Msa0763890 | Msa0903390 | 0.814875 | 1.232694e-51 | -8.615850e-47 |
Msa0763920 | Msa0903390 | 0.812430 | 4.257364e-51 | -8.615850e-47 |
Msa0808100 | Msa0903390 | 0.808018 | 3.805531e-50 | -8.615850e-47 |
Msa0810220 | Msa0903390 | 0.802431 | 5.628518e-49 | -8.615850e-47 |
Msa0831850 | Msa0903390 | 0.818598 | 1.803522e-52 | -8.615850e-47 |
Msa0832090 | Msa0903390 | 0.827444 | 1.559202e-54 | -8.615850e-47 |
Msa0836850 | Msa0903390 | 0.814632 | 1.395451e-51 | -8.615850e-47 |
Msa0123300 | Msa0903390 | 0.828995 | 6.593655e-55 | -8.615850e-47 |
Msa0138500 | Msa0903390 | 0.807518 | 4.860001e-50 | -8.615850e-47 |
Msa0138520 | Msa0903390 | 0.811686 | 6.183794e-51 | -8.615850e-47 |
Msa0139700 | Msa0903390 | 0.815081 | 1.110008e-51 | -8.615850e-47 |
Msa0143850 | Msa0903390 | 0.811536 | 6.665422e-51 | -8.615850e-47 |
Msa0149300 | Msa0903390 | 0.820958 | 5.208029e-53 | -8.615850e-47 |
Msa0159770 | Msa0903390 | 0.806712 | 7.201158e-50 | -8.615850e-47 |
Msa0169820 | Msa0903390 | 0.804988 | 1.658386e-49 | -8.615850e-47 |
Msa0170140 | Msa0903390 | 0.802122 | 6.516263e-49 | -8.615850e-47 |
Msa0178510 | Msa0903390 | 0.833003 | 6.845829e-56 | -8.615850e-47 |
Msa0186950 | Msa0903390 | 0.831152 | 1.962259e-55 | -8.615850e-47 |
Msa0204840 | Msa0903390 | 0.815126 | 1.084683e-51 | -8.615850e-47 |
Msa0206010 | Msa0903390 | 0.832717 | 8.060870e-56 | -8.615850e-47 |
Msa0225220 | Msa0903390 | 0.800858 | 1.183227e-48 | -8.615850e-47 |
Msa0226180 | Msa0903390 | 0.804874 | 1.751755e-49 | -8.615850e-47 |
Msa0234440 | Msa0903390 | 0.802192 | 6.303052e-49 | -8.615850e-47 |
Msa0237310 | Msa0903390 | 0.808187 | 3.502781e-50 | -8.615850e-47 |
Msa0373450 | Msa0903390 | 0.801919 | 7.175257e-49 | -8.615850e-47 |
Msa0388220 | Msa0903390 | 0.800572 | 1.353559e-48 | -8.615850e-47 |
Msa0393620 | Msa0903390 | 0.836733 | 7.870502e-57 | -8.615850e-47 |
Msa0411390 | Msa0903390 | 0.808530 | 2.959884e-50 | -8.615850e-47 |
Msa0417330 | Msa0903390 | 0.806565 | 7.734449e-50 | -8.615850e-47 |
Msa0422180 | Msa0903390 | 0.822214 | 2.670544e-53 | -8.615850e-47 |
Msa0423860 | Msa0903390 | 0.830038 | 3.677660e-55 | -8.615850e-47 |
Msa0433410 | Msa0903390 | -0.815104 | 1.096650e-51 | -8.615850e-47 |
Msa0436370 | Msa0903390 | 0.817314 | 3.516747e-52 | -8.615850e-47 |
Msa0439970 | Msa0903390 | 0.809336 | 1.989681e-50 | -8.615850e-47 |
Msa0455760 | Msa0903390 | 0.813897 | 2.027987e-51 | -8.615850e-47 |
Msa0469940 | Msa0903390 | -0.802607 | 5.177063e-49 | -8.615850e-47 |
Msa0471900 | Msa0903390 | 0.805242 | 1.467304e-49 | -8.615850e-47 |
Msa0477130 | Msa0903390 | -0.800511 | 1.392855e-48 | -8.615850e-47 |
Msa0482180 | Msa0903390 | 0.803087 | 4.120650e-49 | -8.615850e-47 |
Msa0240270 | Msa0903390 | 0.811300 | 7.499524e-51 | -8.615850e-47 |
Msa0241140 | Msa0903390 | 0.810650 | 1.037368e-50 | -8.615850e-47 |
Msa0243250 | Msa0903390 | 0.808634 | 2.812620e-50 | -8.615850e-47 |
Msa0244190 | Msa0903390 | 0.807718 | 4.407777e-50 | -8.615850e-47 |
Msa0249100 | Msa0903390 | 0.835371 | 1.745001e-56 | -8.615850e-47 |
Msa0251270 | Msa0903390 | 0.802903 | 4.497867e-49 | -8.615850e-47 |
Msa0265150 | Msa0903390 | 0.816249 | 6.096334e-52 | -8.615850e-47 |
Msa0269560 | Msa0903390 | 0.805251 | 1.461200e-49 | -8.615850e-47 |
Msa0271550 | Msa0903390 | 0.836189 | 1.082761e-56 | -8.615850e-47 |
Msa0274730 | Msa0903390 | 0.807595 | 4.680206e-50 | -8.615850e-47 |
Msa0284520 | Msa0903390 | 0.806191 | 9.273633e-50 | -8.615850e-47 |
Msa0287410 | Msa0903390 | 0.803585 | 3.249975e-49 | -8.615850e-47 |
Msa0290760 | Msa0903390 | 0.800154 | 1.646097e-48 | -8.615850e-47 |
Msa0307310 | Msa0903390 | 0.833984 | 3.894502e-56 | -8.615850e-47 |
Msa0308460 | Msa0903390 | 0.800494 | 1.403521e-48 | -8.615850e-47 |
Msa0311610 | Msa0903390 | 0.809629 | 1.721995e-50 | -8.615850e-47 |
Msa0315530 | Msa0903390 | 0.800634 | 1.314771e-48 | -8.615850e-47 |
Msa0317510 | Msa0903390 | 0.800702 | 1.273479e-48 | -8.615850e-47 |
Msa0317740 | Msa0903390 | 0.807820 | 4.193758e-50 | -8.615850e-47 |
Msa0319170 | Msa0903390 | 0.822895 | 1.854479e-53 | -8.615850e-47 |
Msa0319290 | Msa0903390 | 0.809411 | 1.917518e-50 | -8.615850e-47 |
Msa0326110 | Msa0903390 | 0.832589 | 8.672970e-56 | -8.615850e-47 |
Msa0347950 | Msa0903390 | 0.829490 | 5.000970e-55 | -8.615850e-47 |
Msa0347990 | Msa0903390 | 0.825427 | 4.714733e-54 | -8.615850e-47 |
Msa0348530 | Msa0903390 | 0.807195 | 5.691260e-50 | -8.615850e-47 |
Msa0484780 | Msa0903390 | 0.801486 | 8.802702e-49 | -8.615850e-47 |
Msa0485490 | Msa0903390 | 0.835557 | 1.565330e-56 | -8.615850e-47 |
Msa0506860 | Msa0903390 | 0.826274 | 2.967248e-54 | -8.615850e-47 |
Msa0512870 | Msa0903390 | 0.800489 | 1.407340e-48 | -8.615850e-47 |
Msa0526070 | Msa0903390 | -0.809449 | 1.881506e-50 | -8.615850e-47 |
Msa0530650 | Msa0903390 | 0.811453 | 6.949356e-51 | -8.615850e-47 |
Msa0559500 | Msa0903390 | 0.810840 | 9.436426e-51 | -8.615850e-47 |
Msa0566750 | Msa0903390 | 0.813508 | 2.469888e-51 | -8.615850e-47 |
Msa0572480 | Msa0903390 | 0.808294 | 3.324186e-50 | -8.615850e-47 |
Msa0579200 | Msa0903390 | 0.813616 | 2.338472e-51 | -8.615850e-47 |
Msa0581050 | Msa0903390 | 0.822622 | 2.147065e-53 | -8.615850e-47 |
Msa0598160 | Msa0903390 | 0.800215 | 1.600124e-48 | -8.615850e-47 |
Msa0844110 | Msa0903390 | 0.806619 | 7.531827e-50 | -8.615850e-47 |
Msa0844490 | Msa0903390 | 0.803812 | 2.915963e-49 | -8.615850e-47 |
Msa0847880 | Msa0903390 | 0.819041 | 1.430522e-52 | -8.615850e-47 |
Msa0868160 | Msa0903390 | 0.812689 | 3.736024e-51 | -8.615850e-47 |
Msa0870060 | Msa0903390 | 0.801631 | 8.220017e-49 | -8.615850e-47 |
Msa0873860 | Msa0903390 | 0.809539 | 1.799862e-50 | -8.615850e-47 |
Msa0899970 | Msa0903390 | 0.807120 | 5.903771e-50 | -8.615850e-47 |
Msa0900620 | Msa0903390 | 0.800085 | 1.700090e-48 | -8.615850e-47 |
Msa0902710 | Msa0903390 | 0.800557 | 1.362999e-48 | -8.615850e-47 |
Msa0902830 | Msa0903390 | 0.816298 | 5.943159e-52 | -8.615850e-47 |
Msa0903390 | Msa0924310 | 0.828485 | 8.758396e-55 | -8.615850e-47 |
Msa0903390 | Msa0925870 | 0.810624 | 1.050545e-50 | -8.615850e-47 |
Msa0903390 | Msa0926890 | 0.806588 | 7.646877e-50 | -8.615850e-47 |
Msa0903390 | Msa0936390 | 0.815353 | 9.654451e-52 | -8.615850e-47 |
Msa0903390 | Msa0953120 | 0.803247 | 3.818599e-49 | -8.615850e-47 |
Msa0903390 | Msa0964900 | 0.805412 | 1.351615e-49 | -8.615850e-47 |
Msa0903390 | Msa0965290 | 0.804092 | 2.549407e-49 | -8.615850e-47 |
Msa0903390 | Msa0969520 | 0.826986 | 2.007024e-54 | -8.615850e-47 |
Msa0903390 | Msa0973600 | 0.801673 | 8.057477e-49 | -8.615850e-47 |
Msa0903390 | Msa0998460 | 0.809478 | 1.855298e-50 | -8.615850e-47 |
Msa0903390 | Msa0999680 | 0.802703 | 4.946638e-49 | -8.615850e-47 |
Msa0903390 | Msa1008750 | 0.820485 | 6.689849e-53 | -8.615850e-47 |
Msa0903390 | Msa1034200 | 0.818419 | 1.979985e-52 | -8.615850e-47 |
Msa0903390 | Msa1036410 | 0.810903 | 9.145541e-51 | -8.615850e-47 |
Msa0903390 | Msa1039710 | -0.818235 | 2.178652e-52 | -8.615850e-47 |
Msa0903390 | Msa1043420 | 0.803014 | 4.267659e-49 | -8.615850e-47 |
Msa0903390 | Msa1043480 | 0.805173 | 1.516950e-49 | -8.615850e-47 |
Msa0903390 | Msa1050740 | 0.808167 | 3.537998e-50 | -8.615850e-47 |
Msa0903390 | Msa1052330 | 0.821054 | 4.950014e-53 | -8.615850e-47 |
Msa0903390 | Msa1063420 | 0.808478 | 3.037523e-50 | -8.615850e-47 |
Msa0903390 | Msa1076700 | 0.805947 | 1.043667e-49 | -8.615850e-47 |
Msa0903390 | Msa1080960 | 0.816517 | 5.310293e-52 | -8.615850e-47 |
Msa0903390 | Msa1093480 | 0.807705 | 4.435326e-50 | -8.615850e-47 |
Msa0903390 | Msa1115280 | 0.800791 | 1.221304e-48 | -8.615850e-47 |
Msa0903390 | Msa1137570 | 0.815284 | 1.000528e-51 | -8.615850e-47 |
Msa0903390 | Msa1143020 | 0.826946 | 2.051482e-54 | -8.615850e-47 |
Msa0903390 | Msa1178110 | 0.806303 | 8.782157e-50 | -8.615850e-47 |
Msa0903390 | Msa1185980 | 0.807253 | 5.532852e-50 | -8.615850e-47 |
Msa0903390 | Msa1205370 | 0.805255 | 1.457818e-49 | -8.615850e-47 |
Msa0903390 | Msa1215920 | 0.802261 | 6.102375e-49 | -8.615850e-47 |
Msa0903390 | Msa1224480 | 0.827751 | 1.315561e-54 | -8.615850e-47 |
Msa0903390 | Msa1224580 | -0.807721 | 4.401592e-50 | -8.615850e-47 |
Msa0903390 | Msa1258370 | 0.810238 | 1.273345e-50 | -8.615850e-47 |
Msa0903390 | Msa1270660 | 0.808609 | 2.847769e-50 | -8.615850e-47 |
Msa0903390 | Msa1270730 | 0.814933 | 1.196771e-51 | -8.615850e-47 |
Msa0903390 | Msa1276440 | 0.800521 | 1.385871e-48 | -8.615850e-47 |
Msa0903390 | Msa1291450 | 0.808838 | 2.544399e-50 | -8.615850e-47 |
Msa0903390 | Msa1297290 | 0.807199 | 5.680455e-50 | -8.615850e-47 |
Msa0903390 | Msa1304890 | -0.801630 | 8.224389e-49 | -8.615850e-47 |
Msa0903390 | Msa1306850 | 0.802663 | 5.040901e-49 | -8.615850e-47 |
Msa0903390 | Msa1307550 | 0.828773 | 7.459498e-55 | -8.615850e-47 |
Msa0903390 | Msa1308870 | 0.802020 | 6.838974e-49 | -8.615850e-47 |
Msa0903390 | Msa1331000 | 0.812314 | 4.512539e-51 | -8.615850e-47 |
Msa0903390 | Msa1333680 | 0.803776 | 2.965663e-49 | -8.615850e-47 |
Msa0903390 | Msa1333730 | 0.848423 | 6.187639e-60 | -8.615850e-47 |
Msa0903390 | Msa1349450 | 0.808773 | 2.627129e-50 | -8.615850e-47 |
Msa0903390 | Msa1359560 | 0.805887 | 1.074673e-49 | -8.615850e-47 |
Msa0903390 | Msa1372150 | 0.843337 | 1.490982e-58 | -8.615850e-47 |
Msa0903390 | Msa1373430 | -0.804051 | 2.599922e-49 | -8.615850e-47 |
Msa0903390 | Msa1378940 | 0.802634 | 5.112411e-49 | -8.615850e-47 |
Msa0903390 | Msa1379850 | 0.818886 | 1.551388e-52 | -8.615850e-47 |
Msa0903390 | Msa1380900 | 0.810946 | 8.951927e-51 | -8.615850e-47 |
Msa0903390 | Msa1385000 | 0.806996 | 6.270931e-50 | -8.615850e-47 |
Msa0903390 | Msa1397120 | 0.800149 | 1.650298e-48 | -8.615850e-47 |
Msa0903390 | Msa1398890 | 0.800201 | 1.610917e-48 | -8.615850e-47 |
Msa0903390 | Msa1400120 | 0.805866 | 1.085550e-49 | -8.615850e-47 |
Msa0903390 | Msa1401460 | 0.807866 | 4.100029e-50 | -8.615850e-47 |
Msa0903390 | Msa1408620 | -0.800303 | 1.535637e-48 | -8.615850e-47 |
Msa0903390 | Msa1418110 | 0.814886 | 1.225999e-51 | -8.615850e-47 |
Msa0903390 | Msa1424630 | 0.805374 | 1.376656e-49 | -8.615850e-47 |
Msa0903390 | Msa1428780 | 0.814078 | 1.850478e-51 | -8.615850e-47 |
Msa0903390 | Msa1440740 | 0.820126 | 8.088196e-53 | -8.615850e-47 |
Msa0903390 | Msa1451620 | -0.805543 | 1.268747e-49 | -8.615850e-47 |
Msa0903390 | Msa1458340 | 0.802100 | 6.586098e-49 | -8.615850e-47 |
Msa0903390 | Msa1461710 | 0.818232 | 2.182684e-52 | -8.615850e-47 |
Msa0903390 | Msa1462360 | 0.804017 | 2.643184e-49 | -8.615850e-47 |
Msa0903390 | Msa1466220 | 0.803917 | 2.772426e-49 | -8.615850e-47 |
Msa0903390 | Msa1466540 | 0.815499 | 8.958082e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0903390 | MtrunA17_Chr6g0451531 | 81.720 | 93 | 12 | 3 | 1 | 88 | 1 | 93 | 2.57e-39 | 137 |
Msa0903390 | MtrunA17_Chr6g0451541 | 81.720 | 93 | 12 | 3 | 1 | 88 | 1 | 93 | 3.24e-39 | 137 |
Msa0903390 | MtrunA17_Chr6g0451561 | 78.947 | 95 | 13 | 3 | 1 | 88 | 1 | 95 | 1.07e-37 | 132 |
Msa0903390 | MtrunA17_Chr3g0107671 | 61.798 | 89 | 31 | 2 | 1 | 88 | 1 | 87 | 2.79e-24 | 95.5 |
Msa0903390 | MtrunA17_Chr6g0451511 | 56.667 | 90 | 37 | 2 | 1 | 88 | 1 | 90 | 7.72e-24 | 94.4 |
Msa0903390 | MtrunA17_Chr3g0107661 | 60.000 | 90 | 32 | 2 | 1 | 88 | 1 | 88 | 2.41e-23 | 90.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 24 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGTGAGTTATTGGAATTT+TGG | 0.204889 | 6_2:-476436 | None:intergenic |
TTCCAATCTTCAAAGTGATT+TGG | 0.278610 | 6_2:+476822 | Msa0903390:CDS |
CGGAGCCACTCACATGGTTG+TGG | 0.324121 | 6_2:-477337 | None:intergenic |
TCAATTATTACATACAGTTT+AGG | 0.324280 | 6_2:-476522 | None:intergenic |
TTGAAGATTGGAAGAATCTA+TGG | 0.335987 | 6_2:-476812 | None:intergenic |
AGCCAAATCACTTTGAAGAT+TGG | 0.364954 | 6_2:-476824 | None:intergenic |
ATGTGATGGAAGTGAGTTAT+TGG | 0.376355 | 6_2:-476444 | None:intergenic |
GGTAGCTTCAAAGGCTATAA+TGG | 0.391709 | 6_2:-476791 | None:intergenic |
GGAGCCACTCACATGGTTGT+GGG | 0.413731 | 6_2:-477336 | None:intergenic |
TTTGAATCATTATCATACTC+AGG | 0.449724 | 6_2:-477362 | None:intergenic |
GAACACATAGTTACAATTTG+TGG | 0.454235 | 6_2:+476721 | Msa0903390:CDS |
ATAGTTACAATTTGTGGTGT+TGG | 0.455361 | 6_2:+476727 | Msa0903390:CDS |
AGAATCTATGGTAGCTTCAA+AGG | 0.487090 | 6_2:-476800 | None:intergenic |
TTAGGTTGTGCCATGGTGCT+AGG | 0.502151 | 6_2:-476504 | None:intergenic |
TTGAATCATTATCATACTCA+GGG | 0.505249 | 6_2:-477361 | None:intergenic |
GAGCCACTCACATGGTTGTG+GGG | 0.506735 | 6_2:-477335 | None:intergenic |
TAGAAGCTTATGTTATGTGA+TGG | 0.544167 | 6_2:-476458 | None:intergenic |
TTTGTGGTGTTGGATTGTGT+TGG | 0.587547 | 6_2:+476737 | Msa0903390:CDS |
AGCCACTCACATGGTTGTGG+GGG | 0.591757 | 6_2:-477334 | None:intergenic |
ATACAGTTTAGGTTGTGCCA+TGG | 0.608316 | 6_2:-476511 | None:intergenic |
ATCATTATCATACTCAGGGG+CGG | 0.655258 | 6_2:-477357 | None:intergenic |
CAGGGGCGGAGCCACTCACA+TGG | 0.657826 | 6_2:-477343 | None:intergenic |
ATTTAATCTTCCTAGCACCA+TGG | 0.668100 | 6_2:+476494 | Msa0903390:exon |
TGAATCATTATCATACTCAG+GGG | 0.669781 | 6_2:-477360 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTAGTTAATTTGTATT+TGG | + | chr6_2:476606-476625 | Msa0903390:intron | 10.0% |
!!! | TTATTTAGTTAATTTGTATT+TGG | + | chr6_2:476606-476625 | Msa0903390:intron | 10.0% |
!! | AAATCGGTAATAAATAATAA+TGG | - | chr6_2:476556-476575 | None:intergenic | 15.0% |
!! | AAATCGGTAATAAATAATAA+TGG | - | chr6_2:476556-476575 | None:intergenic | 15.0% |
!! | TCAATTATTACATACAGTTT+AGG | - | chr6_2:476525-476544 | None:intergenic | 20.0% |
!! | AAGTATCATGCAATATAAAT+CGG | - | chr6_2:476572-476591 | None:intergenic | 20.0% |
!! | ATCAAATCCTTAAAAAAACA+TGG | + | chr6_2:476683-476702 | Msa0903390:CDS | 20.0% |
!!! | TAACATTCCATGTTTTTTTA+AGG | - | chr6_2:476693-476712 | None:intergenic | 20.0% |
!! | TGAAATTACTAAAACAATTG+TGG | + | chr6_2:477242-477261 | Msa0903390:intron | 20.0% |
!! | GAAATTACTAAAACAATTGT+GGG | + | chr6_2:477243-477262 | Msa0903390:intron | 20.0% |
!! | TCAATTATTACATACAGTTT+AGG | - | chr6_2:476525-476544 | None:intergenic | 20.0% |
!! | AAGTATCATGCAATATAAAT+CGG | - | chr6_2:476572-476591 | None:intergenic | 20.0% |
!! | ATCAAATCCTTAAAAAAACA+TGG | + | chr6_2:476683-476702 | Msa0903390:CDS | 20.0% |
!!! | TAACATTCCATGTTTTTTTA+AGG | - | chr6_2:476693-476712 | None:intergenic | 20.0% |
!! | TGAAATTACTAAAACAATTG+TGG | + | chr6_2:477242-477261 | Msa0903390:intron | 20.0% |
!! | GAAATTACTAAAACAATTGT+GGG | + | chr6_2:477243-477262 | Msa0903390:intron | 20.0% |
! | TACTATTAAGAGAGAAAGAA+GGG | - | chr6_2:476912-476931 | None:intergenic | 25.0% |
! | NNNNNNTTGTTGAAACAGAG+AGG | + | chr6_2:477060-477079 | Msa0903390:intron | 25.0% |
! | NNNNNTTGTTGAAACAGAGA+GGG | + | chr6_2:477061-477080 | Msa0903390:intron | 25.0% |
! | AAAAATAGCAAAATTTGTGC+AGG | + | chr6_2:477305-477324 | Msa0903390:intron | 25.0% |
! | TTGAATCATTATCATACTCA+GGG | - | chr6_2:477364-477383 | None:intergenic | 25.0% |
! | TTTGAATCATTATCATACTC+AGG | - | chr6_2:477365-477384 | None:intergenic | 25.0% |
! | TACTATTAAGAGAGAAAGAA+GGG | - | chr6_2:476912-476931 | None:intergenic | 25.0% |
! | NNNNNNTTGTTGAAACAGAG+AGG | + | chr6_2:477060-477079 | Msa0903390:intron | 25.0% |
! | NNNNNTTGTTGAAACAGAGA+GGG | + | chr6_2:477061-477080 | Msa0903390:intron | 25.0% |
! | AAAAATAGCAAAATTTGTGC+AGG | + | chr6_2:477305-477324 | Msa0903390:intron | 25.0% |
! | TTGAATCATTATCATACTCA+GGG | - | chr6_2:477364-477383 | None:intergenic | 25.0% |
! | TTTGAATCATTATCATACTC+AGG | - | chr6_2:477365-477384 | None:intergenic | 25.0% |
TAGAAGCTTATGTTATGTGA+TGG | - | chr6_2:476461-476480 | None:intergenic | 30.0% | |
!! | TATTTTTGCAGATTTAGCAG+TGG | + | chr6_2:476631-476650 | Msa0903390:intron | 30.0% |
GAACACATAGTTACAATTTG+TGG | + | chr6_2:476721-476740 | Msa0903390:CDS | 30.0% | |
ATAGTTACAATTTGTGGTGT+TGG | + | chr6_2:476727-476746 | Msa0903390:CDS | 30.0% | |
TTGAAGATTGGAAGAATCTA+TGG | - | chr6_2:476815-476834 | None:intergenic | 30.0% | |
TTCCAATCTTCAAAGTGATT+TGG | + | chr6_2:476822-476841 | Msa0903390:CDS | 30.0% | |
GTACTATTAAGAGAGAAAGA+AGG | - | chr6_2:476913-476932 | None:intergenic | 30.0% | |
TTCTTTCATTCTATGTCACA+AGG | - | chr6_2:477099-477118 | None:intergenic | 30.0% | |
! | CAGATTTTTGTTAGCCAATT+GGG | + | chr6_2:477178-477197 | Msa0903390:intron | 30.0% |
ATTACTAAAACAATTGTGGG+TGG | + | chr6_2:477246-477265 | Msa0903390:intron | 30.0% | |
TTACTAAAACAATTGTGGGT+GGG | + | chr6_2:477247-477266 | Msa0903390:intron | 30.0% | |
TGAATCATTATCATACTCAG+GGG | - | chr6_2:477363-477382 | None:intergenic | 30.0% | |
TAGAAGCTTATGTTATGTGA+TGG | - | chr6_2:476461-476480 | None:intergenic | 30.0% | |
!! | TATTTTTGCAGATTTAGCAG+TGG | + | chr6_2:476631-476650 | Msa0903390:intron | 30.0% |
GAACACATAGTTACAATTTG+TGG | + | chr6_2:476721-476740 | Msa0903390:CDS | 30.0% | |
ATAGTTACAATTTGTGGTGT+TGG | + | chr6_2:476727-476746 | Msa0903390:CDS | 30.0% | |
TTGAAGATTGGAAGAATCTA+TGG | - | chr6_2:476815-476834 | None:intergenic | 30.0% | |
TTCCAATCTTCAAAGTGATT+TGG | + | chr6_2:476822-476841 | Msa0903390:CDS | 30.0% | |
GTACTATTAAGAGAGAAAGA+AGG | - | chr6_2:476913-476932 | None:intergenic | 30.0% | |
TTCTTTCATTCTATGTCACA+AGG | - | chr6_2:477099-477118 | None:intergenic | 30.0% | |
! | CAGATTTTTGTTAGCCAATT+GGG | + | chr6_2:477178-477197 | Msa0903390:intron | 30.0% |
ATTACTAAAACAATTGTGGG+TGG | + | chr6_2:477246-477265 | Msa0903390:intron | 30.0% | |
TTACTAAAACAATTGTGGGT+GGG | + | chr6_2:477247-477266 | Msa0903390:intron | 30.0% | |
TGAATCATTATCATACTCAG+GGG | - | chr6_2:477363-477382 | None:intergenic | 30.0% | |
! | ATGTGATGGAAGTGAGTTAT+TGG | - | chr6_2:476447-476466 | None:intergenic | 35.0% |
ATTTAATCTTCCTAGCACCA+TGG | + | chr6_2:476494-476513 | Msa0903390:exon | 35.0% | |
AGAATCTATGGTAGCTTCAA+AGG | - | chr6_2:476803-476822 | None:intergenic | 35.0% | |
! | AGCCAAATCACTTTGAAGAT+TGG | - | chr6_2:476827-476846 | None:intergenic | 35.0% |
! | CTGTGATTTTGTGAACTGAT+GGG | + | chr6_2:477128-477147 | Msa0903390:intron | 35.0% |
! | TGTGATTTTGTGAACTGATG+GGG | + | chr6_2:477129-477148 | Msa0903390:intron | 35.0% |
! | GCAGATTTTTGTTAGCCAAT+TGG | + | chr6_2:477177-477196 | Msa0903390:intron | 35.0% |
TACTAAAACAATTGTGGGTG+GGG | + | chr6_2:477248-477267 | Msa0903390:intron | 35.0% | |
! | ATGTGATGGAAGTGAGTTAT+TGG | - | chr6_2:476447-476466 | None:intergenic | 35.0% |
ATTTAATCTTCCTAGCACCA+TGG | + | chr6_2:476494-476513 | Msa0903390:exon | 35.0% | |
AGAATCTATGGTAGCTTCAA+AGG | - | chr6_2:476803-476822 | None:intergenic | 35.0% | |
! | AGCCAAATCACTTTGAAGAT+TGG | - | chr6_2:476827-476846 | None:intergenic | 35.0% |
! | CTGTGATTTTGTGAACTGAT+GGG | + | chr6_2:477128-477147 | Msa0903390:intron | 35.0% |
! | TGTGATTTTGTGAACTGATG+GGG | + | chr6_2:477129-477148 | Msa0903390:intron | 35.0% |
! | GCAGATTTTTGTTAGCCAAT+TGG | + | chr6_2:477177-477196 | Msa0903390:intron | 35.0% |
TACTAAAACAATTGTGGGTG+GGG | + | chr6_2:477248-477267 | Msa0903390:intron | 35.0% | |
!! | ATACAGTTTAGGTTGTGCCA+TGG | - | chr6_2:476514-476533 | None:intergenic | 40.0% |
! | TTTGTGGTGTTGGATTGTGT+TGG | + | chr6_2:476737-476756 | Msa0903390:CDS | 40.0% |
GGTAGCTTCAAAGGCTATAA+TGG | - | chr6_2:476794-476813 | None:intergenic | 40.0% | |
! | GCTGTGATTTTGTGAACTGA+TGG | + | chr6_2:477127-477146 | Msa0903390:intron | 40.0% |
ATAGCAAAATTTGTGCAGGC+AGG | + | chr6_2:477309-477328 | Msa0903390:intron | 40.0% | |
ATCATTATCATACTCAGGGG+CGG | - | chr6_2:477360-477379 | None:intergenic | 40.0% | |
!! | ATACAGTTTAGGTTGTGCCA+TGG | - | chr6_2:476514-476533 | None:intergenic | 40.0% |
! | TTTGTGGTGTTGGATTGTGT+TGG | + | chr6_2:476737-476756 | Msa0903390:CDS | 40.0% |
GGTAGCTTCAAAGGCTATAA+TGG | - | chr6_2:476794-476813 | None:intergenic | 40.0% | |
! | GCTGTGATTTTGTGAACTGA+TGG | + | chr6_2:477127-477146 | Msa0903390:intron | 40.0% |
ATAGCAAAATTTGTGCAGGC+AGG | + | chr6_2:477309-477328 | Msa0903390:intron | 40.0% | |
ATCATTATCATACTCAGGGG+CGG | - | chr6_2:477360-477379 | None:intergenic | 40.0% | |
! | GATTTTGTGAACTGATGGGG+CGG | + | chr6_2:477132-477151 | Msa0903390:intron | 45.0% |
TTTGTTAGCCAATTGGGCCT+TGG | + | chr6_2:477184-477203 | Msa0903390:intron | 45.0% | |
TTGTTAGCCAATTGGGCCTT+GGG | + | chr6_2:477185-477204 | Msa0903390:intron | 45.0% | |
! | GATTTTGTGAACTGATGGGG+CGG | + | chr6_2:477132-477151 | Msa0903390:intron | 45.0% |
TTTGTTAGCCAATTGGGCCT+TGG | + | chr6_2:477184-477203 | Msa0903390:intron | 45.0% | |
TTGTTAGCCAATTGGGCCTT+GGG | + | chr6_2:477185-477204 | Msa0903390:intron | 45.0% | |
! | TTAGGTTGTGCCATGGTGCT+AGG | - | chr6_2:476507-476526 | None:intergenic | 50.0% |
!! | GGCGGCTGTTTTGTGTTGTT+TGG | + | chr6_2:477150-477169 | Msa0903390:intron | 50.0% |
! | TTAGGTTGTGCCATGGTGCT+AGG | - | chr6_2:476507-476526 | None:intergenic | 50.0% |
!! | GGCGGCTGTTTTGTGTTGTT+TGG | + | chr6_2:477150-477169 | Msa0903390:intron | 50.0% |
AACCCAACTTCCCAAGCCCA+AGG | - | chr6_2:477204-477223 | None:intergenic | 55.0% | |
AGCCACTCACATGGTTGTGG+GGG | - | chr6_2:477337-477356 | None:intergenic | 55.0% | |
GAGCCACTCACATGGTTGTG+GGG | - | chr6_2:477338-477357 | None:intergenic | 55.0% | |
GGAGCCACTCACATGGTTGT+GGG | - | chr6_2:477339-477358 | None:intergenic | 55.0% | |
AACCCAACTTCCCAAGCCCA+AGG | - | chr6_2:477204-477223 | None:intergenic | 55.0% | |
AGCCACTCACATGGTTGTGG+GGG | - | chr6_2:477337-477356 | None:intergenic | 55.0% | |
GAGCCACTCACATGGTTGTG+GGG | - | chr6_2:477338-477357 | None:intergenic | 55.0% | |
GGAGCCACTCACATGGTTGT+GGG | - | chr6_2:477339-477358 | None:intergenic | 55.0% | |
AGCCAATTGGGCCTTGGGCT+TGG | + | chr6_2:477190-477209 | Msa0903390:intron | 60.0% | |
GCCAATTGGGCCTTGGGCTT+GGG | + | chr6_2:477191-477210 | Msa0903390:intron | 60.0% | |
TCCCAAGCCCAAGGCCCAAT+TGG | - | chr6_2:477195-477214 | None:intergenic | 60.0% | |
GGCCTTGGGCTTGGGAAGTT+GGG | + | chr6_2:477199-477218 | Msa0903390:intron | 60.0% | |
AGCCCCCACAACCATGTGAG+TGG | + | chr6_2:477332-477351 | Msa0903390:CDS | 60.0% | |
CGGAGCCACTCACATGGTTG+TGG | - | chr6_2:477340-477359 | None:intergenic | 60.0% | |
AGCCAATTGGGCCTTGGGCT+TGG | + | chr6_2:477190-477209 | Msa0903390:intron | 60.0% | |
GCCAATTGGGCCTTGGGCTT+GGG | + | chr6_2:477191-477210 | Msa0903390:intron | 60.0% | |
TCCCAAGCCCAAGGCCCAAT+TGG | - | chr6_2:477195-477214 | None:intergenic | 60.0% | |
GGCCTTGGGCTTGGGAAGTT+GGG | + | chr6_2:477199-477218 | Msa0903390:intron | 60.0% | |
AGCCCCCACAACCATGTGAG+TGG | + | chr6_2:477332-477351 | Msa0903390:CDS | 60.0% | |
CGGAGCCACTCACATGGTTG+TGG | - | chr6_2:477340-477359 | None:intergenic | 60.0% | |
GGGCCTTGGGCTTGGGAAGT+TGG | + | chr6_2:477198-477217 | Msa0903390:intron | 65.0% | |
GGGCCTTGGGCTTGGGAAGT+TGG | + | chr6_2:477198-477217 | Msa0903390:intron | 65.0% | |
CAGGGGCGGAGCCACTCACA+TGG | - | chr6_2:477346-477365 | None:intergenic | 70.0% | |
CAGGGGCGGAGCCACTCACA+TGG | - | chr6_2:477346-477365 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 476437 | 477388 | 476437 | ID=Msa0903390;Name=Msa0903390 |
chr6_2 | mRNA | 476437 | 477388 | 476437 | ID=Msa0903390-mRNA-1;Parent=Msa0903390;Name=Msa0903390-mRNA-1;_AED=0.17;_eAED=0.17;_QI=76|0.5|0.33|0.66|0.5|0.66|3|0|106 |
chr6_2 | exon | 476437 | 476529 | 476437 | ID=Msa0903390-mRNA-1:exon:219;Parent=Msa0903390-mRNA-1 |
chr6_2 | exon | 476642 | 476887 | 476642 | ID=Msa0903390-mRNA-1:exon:220;Parent=Msa0903390-mRNA-1 |
chr6_2 | exon | 477331 | 477388 | 477331 | ID=Msa0903390-mRNA-1:exon:221;Parent=Msa0903390-mRNA-1 |
chr6_2 | five_prime_UTR | 476437 | 476512 | 476437 | ID=Msa0903390-mRNA-1:five_prime_utr;Parent=Msa0903390-mRNA-1 |
chr6_2 | CDS | 476513 | 476529 | 476513 | ID=Msa0903390-mRNA-1:cds;Parent=Msa0903390-mRNA-1 |
chr6_2 | CDS | 476642 | 476887 | 476642 | ID=Msa0903390-mRNA-1:cds;Parent=Msa0903390-mRNA-1 |
chr6_2 | CDS | 477331 | 477388 | 477331 | ID=Msa0903390-mRNA-1:cds;Parent=Msa0903390-mRNA-1 |
Gene Sequence |
Protein sequence |