AlfalfaGEDB | Msa0657610

M. sativa cultivar zhongmu-4 / Msa0657610

KEGG: K15201
GO: -
PFAM: PF13414.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657610	XP_003607543.1	87.563	989	66	5	1	984	1	937	0.0	1677

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657610	sp\|Q9Y5Q9\|TF3C3_HUMAN	23.980	392	267	2	151	511	130	521	3.81e-32	138
Msa0657610	sp\|Q9Y5Q9\|TF3C3_HUMAN	25.818	275	189	3	710	984	627	886	1.01e-25	118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0657610	-0.819051	1.422479e-52	-8.615850e-47
Msa0002230	Msa0657610	0.817049	4.033856e-52	-8.615850e-47
Msa0002240	Msa0657610	0.814514	1.482175e-51	-8.615850e-47
Msa0003890	Msa0657610	0.821934	3.101092e-53	-8.615850e-47
Msa0006070	Msa0657610	0.811665	6.248593e-51	-8.615850e-47
Msa0006110	Msa0657610	0.828007	1.141770e-54	-8.615850e-47
Msa0007080	Msa0657610	0.809280	2.045488e-50	-8.615850e-47
Msa0011170	Msa0657610	0.808297	3.319403e-50	-8.615850e-47
Msa0011500	Msa0657610	0.801525	8.640945e-49	-8.615850e-47
Msa0012060	Msa0657610	0.825490	4.556933e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657610	MtrunA17_Chr4g0040821	87.563	989	66	5	1	984	1	937	0.0	1677
Msa0657610	MtrunA17_Chr4g0038061	75.545	1010	167	9	1	984	1	956	0.0	1426
Msa0657610	MtrunA17_Chr4g0038041	81.967	61	11	0	189	249	7	67	1.85e-31	117
Msa0657610	MtrunA17_Chr4g0038051	79.710	69	13	1	280	347	1	69	7.01e-30	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657610	AT1G17680.3	59.539	304	99	1	680	983	616	895	6.54e-117	380
Msa0657610	AT1G17680.3	37.910	488	258	7	97	579	88	535	2.64e-77	272
Msa0657610	AT1G17680.2	59.539	304	99	1	680	983	616	895	6.54e-117	380
Msa0657610	AT1G17680.2	37.910	488	258	7	97	579	88	535	2.64e-77	272
Msa0657610	AT1G17680.1	59.539	304	99	1	680	983	616	895	6.54e-117	380
Msa0657610	AT1G17680.1	37.910	488	258	7	97	579	88	535	2.64e-77	272

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Find 221 sgRNAs with CRISPR-Local

Find 1047 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGTTTAGGATCTG+TGG	0.541774	4_3:-67390678	None:intergenic
AAAGATCATTGTTCCGTTTG+AGG	0.368120	4_3:+67392979	Msa0657610:CDS
AAAGCCGAGGCAGTGGCCTC+TGG	0.397065	4_3:+67390026	Msa0657610:CDS
AACACCACAGATCCTAAACA+AGG	0.677930	4_3:+67390674	Msa0657610:CDS
AACCACCGCAACAACCTCAC+CGG	0.580043	4_3:+67379102	Msa0657610:CDS
AAGAAAATTCATCATCAAAA+TGG	0.291614	4_3:+67378764	None:intergenic
AAGATTCATCACTTTGGGAA+AGG	0.544028	4_3:+67381077	Msa0657610:CDS
AAGCATCAGTGTGTTGTACA+AGG	0.483840	4_3:+67391238	Msa0657610:CDS
AAGGGAAGATGATATTTCTG+GGG	0.706308	4_3:+67379489	Msa0657610:CDS
AATAATGTACCGTGTCATAA+CGG	0.541071	4_3:-67380153	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCAATTGTACCAGAAAT+TGG	+	chr4_3:67379025-67379044	Msa0657610:CDS	30.0%
AAACATATATAAGTCGGATC+CGG	-	chr4_3:67379411-67379430	None:intergenic	30.0%
AGAGGAGGAATTAATGAATT+TGG	+	chr4_3:67379528-67379547	Msa0657610:CDS	30.0%
GAGGAGGAATTAATGAATTT+GGG	+	chr4_3:67379529-67379548	Msa0657610:CDS	30.0%
GCAGAAAATTAACGAAAACA+AGG	-	chr4_3:67379862-67379881	None:intergenic	30.0%
CTCTAATCTAAATCCTTTCA+AGG	-	chr4_3:67379930-67379949	None:intergenic	30.0%
CTTGAAAGGATTTAGATTAG+AGG	+	chr4_3:67379928-67379947	Msa0657610:intron	30.0%
GCATTCTCAATTACATGTTA+TGG	+	chr4_3:67379964-67379983	Msa0657610:intron	30.0%
AAAAAAAGAGGTAGGCAAAA+AGG	+	chr4_3:67380061-67380080	Msa0657610:CDS	30.0%
AATAATGTACCGTGTCATAA+CGG	-	chr4_3:67380156-67380175	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	67378767	67393307	67378767	ID=Msa0657610;Name=Msa0657610
chr4_3	mRNA	67378767	67393307	67378767	ID=Msa0657610-mRNA-1;Parent=Msa0657610;Name=Msa0657610-mRNA-1;_AED=0.23;_eAED=0.26;_QI=16\|0.86\|0.81\|1\|1\|1\|16\|308\|984
chr4_3	exon	67378767	67379123	67378767	ID=Msa0657610-mRNA-1:exon:19410;Parent=Msa0657610-mRNA-1
chr4_3	exon	67379465	67379573	67379465	ID=Msa0657610-mRNA-1:exon:19411;Parent=Msa0657610-mRNA-1
chr4_3	exon	67380052	67380165	67380052	ID=Msa0657610-mRNA-1:exon:19412;Parent=Msa0657610-mRNA-1
chr4_3	exon	67380935	67381116	67380935	ID=Msa0657610-mRNA-1:exon:19413;Parent=Msa0657610-mRNA-1
chr4_3	exon	67382506	67382698	67382506	ID=Msa0657610-mRNA-1:exon:19414;Parent=Msa0657610-mRNA-1
chr4_3	exon	67383398	67383646	67383398	ID=Msa0657610-mRNA-1:exon:19415;Parent=Msa0657610-mRNA-1
chr4_3	exon	67384400	67384546	67384400	ID=Msa0657610-mRNA-1:exon:19416;Parent=Msa0657610-mRNA-1
chr4_3	exon	67385909	67385987	67385909	ID=Msa0657610-mRNA-1:exon:19417;Parent=Msa0657610-mRNA-1
chr4_3	exon	67386819	67387177	67386819	ID=Msa0657610-mRNA-1:exon:19418;Parent=Msa0657610-mRNA-1
chr4_3	exon	67387874	67387977	67387874	ID=Msa0657610-mRNA-1:exon:19419;Parent=Msa0657610-mRNA-1
chr4_3	exon	67389965	67390088	67389965	ID=Msa0657610-mRNA-1:exon:19420;Parent=Msa0657610-mRNA-1
chr4_3	exon	67390188	67390455	67390188	ID=Msa0657610-mRNA-1:exon:19421;Parent=Msa0657610-mRNA-1
chr4_3	exon	67390663	67390777	67390663	ID=Msa0657610-mRNA-1:exon:19422;Parent=Msa0657610-mRNA-1
chr4_3	exon	67390912	67391102	67390912	ID=Msa0657610-mRNA-1:exon:19423;Parent=Msa0657610-mRNA-1
chr4_3	exon	67391194	67391306	67391194	ID=Msa0657610-mRNA-1:exon:19424;Parent=Msa0657610-mRNA-1
chr4_3	exon	67392733	67393307	67392733	ID=Msa0657610-mRNA-1:exon:19425;Parent=Msa0657610-mRNA-1
chr4_3	five_prime_UTR	67378767	67378782	67378767	ID=Msa0657610-mRNA-1:five_prime_utr;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67378783	67379123	67378783	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67379465	67379573	67379465	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67380052	67380165	67380052	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67380935	67381116	67380935	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67382506	67382698	67382506	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67383398	67383646	67383398	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67384400	67384546	67384400	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67385909	67385987	67385909	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67386819	67387177	67386819	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67387874	67387977	67387874	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67389965	67390088	67389965	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67390188	67390455	67390188	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67390663	67390777	67390663	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67390912	67391102	67390912	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67391194	67391306	67391194	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	CDS	67392733	67392999	67392733	ID=Msa0657610-mRNA-1:cds;Parent=Msa0657610-mRNA-1
chr4_3	three_prime_UTR	67393000	67393307	67393000	ID=Msa0657610-mRNA-1:three_prime_utr;Parent=Msa0657610-mRNA-1

Gene Sequence

>Msa0657610

ATGGAAGTGATTAACCAGAAGGAGGATGAAGATCATCCAAGGGCGATAGAAGACAACGACAACGCCGTCGACACCGAAGACGACGCATTGTACGGTGCGGAAGAGAACGGAGAAGAAGAAGACGCGTCGGAGAATGAAGAGGAAGAGGAAGAGGAAGGAGAAAACGATACAGTGGAGGAAGATCAATTCAGGTTCGGCAACGGTGTAAATCCGTTGGACTTCGTACGTAACAGTGATCCCAGTGTTCAATTGTACCAGAAATTGGAAGACTACCACCAGAAATCGATGGAGTACCGAGCTCTCGACAACAGAAAGCGAAAACCACCGCAACAACCTCACCGTGAAGAGACTTCTTCTAAGAAGGCAAGGGAAGATGATATTTCTGGGGTAGGCCTAGCTGATGTAGAGGAGGAATTAATGAATTTGGGACAGGGCAAGAGGTCAAAAAAGAAGCGGTCAAAAAAAAGAGGTAGGCAAAAAGGATCAAAGAAGAAACTTGACGAAAAGATATCACAAATGTTCGGTGATGCCCTCATGCACTATACGAGTCGCCGTTATGACACGGCTATAGATGTGTTGCATGAAGTTGTCAGGCTGGAACCAAATTTACCTGACCCGTATCACATCCTTGGAGCTGTCCATGGTGCAATTGGGGATCATGAAAATGAAATGGGTTTTTACATGATTTATGCTCATTTGACTCCAAAAGATTCATCACTTTGGGAAAGGCTCTTTGTGTGGTCCATAAAACAAGGTGATGCTGGTCAAGCCAGTTATTGTATTTCGAAAGCAATAAAAGCAGACCCCCAAGATATTAGTCTTAGAAGGCATCAAGCATTGCTTTATGCTGAAAGTCAAAATTATCAAAAAGCTGCTGAGGCATATGAACAAATACATCAACTTTGTCGTGAAGATGATGCACTAAAAGAAGCAGCTAAGTTCTACCAAAAGTGTGGTCAAGTTGAGCGCTCAATTTGCATTCTCGAAGACTATCTGAAGAGTAAACCAGATGGAGTAAATGCAAGTGTAGTTGATCTACTTGGTACCATATTGATGGAAATTAAGGCGCATGACAGAGCTCTTCAGTTCATAGAACAATCTCAAGTGGTTGGGAAAGAATTGCCCTTAAATTTGAAAGTTAAAGCTGGAATCTGCCATGTTCATCTTGGAAACATGGAAATCGCTCAGGTTTTCTTCAATGATTTGAAACCAGAGAATGCAAGCAAGCACGTTGAGTTGATCACCGAGGTCGCAGACTCATTGATGGGTCTTGGACATTATAATTCTGCATTGAATTATTTTAAGATGTTGGAAGGAAATAGTAAAAATGAAAATGGTCTTCTGTATTTGAAAATTGCTAGATGTTATCGATCCTTGGAAGAAAGGAAACAAGCAATTATCTCTTTTTACAAAGCCCTAGAAATACTACAAGACAATGTTGAAGCACGCATAGCTTTGGCTTCCCTTCTAGTTGAGGAGGGGAAAGAAAATGAAGCCATTTCCTTGTTGTCTCCTCCAAAGGATTCTGGTACTTGTAAAAATGTTTTCTTTCTTTGTGATCAAAGTTCTTCCATGGAGATATATACTAATGGTGAGGTACTTGCAGACTCTGGTGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTGAGAATAAAACTTAAGCTCTGTAACATTTTTCAGATTAGAGGGATGCTTAATGATTTTGTGAATGTAAGTCTCCCTTTGGTACACGAATCTCTGAATGTTCCAGCTCCTAGACGAAAGTTTTATTTCTATGGTGTATTTGGTTTGGATAAGAATGTCTACATTGATTATTATCAAGCATGTCTCTTTGCACTTGCACTTTTTGTGATGGCATTGAGTTTATGGTCGAAAGCTTCCAGGGCAAAAAAGTTGCTCCAGAAAAAGGCAATTGAGAAGGAGAGAAAGAAAGCCGAGGCAGTGGCCTCTGGAATTGACTGGCTAAGTGATGACTCAGATGATGAGCCTCAGGAACCTAACACAGATTCTCCCTTGTGTAATCTTCACAAAGATGAAGGATATCACCAGCTAATCATTGATGTTAGTACTTCTATCACTTTTTCTGTATCCCCTTTCCTTTTTAATGTGCGCCACCTTAATATGAATGTACAGTTGTGCAATGCATTAGCATCCTTGCAAAGGTATAGCGAAGCATTGGAGATTATCAATTTAACTCTAAGATTGGCTCATACTTCCCTGTCTACTGAGAAGAATGAGAAGCTTCGATCTCTTGAAGTTCAAATGGCATACAACACCACAGATCCTAAACAAGGTTTTGATTGTGTAAAAGACATGGTTCAACAACATGCACATAGTGTTGCAGCTTGGAATTGCTACTACAAGGTCGTATCGAGACTGGAAAACCGAGATACAAGGCATGACAAATTTTTACGTTCCATGCAAGGAAAATTTGTCGATTGTGTGCCTCCTATCCTCATTTCTGCGCATCAGTTTACTCTATGTAGCCATCATCAAGATGCGGCAAGGAAATATCTTGAAGCTTATAAACTTCTGCCTGAGAATCCATTGGTTAATCTTTGTGTCGGTACGGCCTTGGTCAACCTGGCGCTGGGTTTCAGACTTCAAAATAAGCATCAGTGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATTTGGAGATCTGCAAGAACAGTCAGGAATCTTTATACAACATAGCTCGGGCATACCATCATGTTGGTCTTGTAACACTGGCAGCAATATATTATGAGAAGGTGATTGCTATTAGGGAGAGAGACTATCCAATTCCTAAACTTCAAAATGAGAGTATTGATGTCATTGAAAATCACAAACCTGGTTACTGCAACCTTCGCAGAGAGGCAGCTTACAATCTGCATTTAATCTACAAAAGGAGTGGGGCTGTCGATCTTGCTAGACAAGTTTTGAAAGATCATTGTTCCGTTTGA

Protein sequence

>Msa0657610

MEVINQKEDEDHPRAIEDNDNAVDTEDDALYGAEENGEEEDASENEEEEEEEGENDTVEEDQFRFGNGVNPLDFVRNSDPSVQLYQKLEDYHQKSMEYRALDNRKRKPPQQPHREETSSKKAREDDISGVGLADVEEELMNLGQGKRSKKKRSKKRGRQKGSKKKLDEKISQMFGDALMHYTSRRYDTAIDVLHEVVRLEPNLPDPYHILGAVHGAIGDHENEMGFYMIYAHLTPKDSSLWERLFVWSIKQGDAGQASYCISKAIKADPQDISLRRHQALLYAESQNYQKAAEAYEQIHQLCREDDALKEAAKFYQKCGQVERSICILEDYLKSKPDGVNASVVDLLGTILMEIKAHDRALQFIEQSQVVGKELPLNLKVKAGICHVHLGNMEIAQVFFNDLKPENASKHVELITEVADSLMGLGHYNSALNYFKMLEGNSKNENGLLYLKIARCYRSLEERKQAIISFYKALEILQDNVEARIALASLLVEEGKENEAISLLSPPKDSGTCKNVFFLCDQSSSMEIYTNGEVLADSGEAHSEKSNRWWVDVRIKLKLCNIFQIRGMLNDFVNVSLPLVHESLNVPAPRRKFYFYGVFGLDKNVYIDYYQACLFALALFVMALSLWSKASRAKKLLQKKAIEKERKKAEAVASGIDWLSDDSDDEPQEPNTDSPLCNLHKDEGYHQLIIDVSTSITFSVSPFLFNVRHLNMNVQLCNALASLQRYSEALEIINLTLRLAHTSLSTEKNEKLRSLEVQMAYNTTDPKQGFDCVKDMVQQHAHSVAAWNCYYKVVSRLENRDTRHDKFLRSMQGKFVDCVPPILISAHQFTLCSHHQDAARKYLEAYKLLPENPLVNLCVGTALVNLALGFRLQNKHQCVVQGLAFLYNNLEICKNSQESLYNIARAYHHVGLVTLAAIYYEKVIAIRERDYPIPKLQNESIDVIENHKPGYCNLRREAAYNLHLIYKRSGAVDLARQVLKDHCSV*