Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000372.t1 | XP_013467241.1 | 94.7 | 301 | 16 | 0 | 1 | 301 | 1 | 301 | 2.70E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000372.t1 | Q9FFB6 | 69.9 | 256 | 77 | 0 | 45 | 300 | 16 | 271 | 1.3e-96 | 354.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000372.t1 | G7ZXV0 | 94.7 | 301 | 16 | 0 | 1 | 301 | 1 | 301 | 1.9e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004457 | MS.gene000372 | PPI |
| MS.gene09127 | MS.gene000372 | PPI |
| MS.gene96207 | MS.gene000372 | PPI |
| MS.gene002763 | MS.gene000372 | PPI |
| MS.gene007740 | MS.gene000372 | PPI |
| MS.gene000372 | MS.gene03701 | PPI |
| MS.gene049765 | MS.gene000372 | PPI |
| MS.gene00991 | MS.gene000372 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000372.t1 | MTR_1g047740 | 94.684 | 301 | 16 | 0 | 1 | 301 | 1 | 301 | 0.0 | 598 |
| MS.gene000372.t1 | MTR_3g108240 | 74.110 | 309 | 72 | 2 | 1 | 301 | 1 | 309 | 1.39e-171 | 477 |
| MS.gene000372.t1 | MTR_3g108240 | 73.463 | 309 | 72 | 3 | 1 | 301 | 1 | 307 | 7.58e-168 | 468 |
| MS.gene000372.t1 | MTR_7g102990 | 70.238 | 252 | 75 | 0 | 50 | 301 | 18 | 269 | 1.76e-140 | 398 |
| MS.gene000372.t1 | MTR_1g010150 | 83.415 | 205 | 34 | 0 | 97 | 301 | 1 | 205 | 2.33e-131 | 372 |
| MS.gene000372.t1 | MTR_4g057310 | 65.152 | 264 | 87 | 1 | 37 | 300 | 4 | 262 | 3.62e-130 | 371 |
| MS.gene000372.t1 | MTR_2g020040 | 58.000 | 250 | 104 | 1 | 48 | 297 | 10 | 258 | 2.37e-106 | 310 |
| MS.gene000372.t1 | MTR_4g057310 | 63.801 | 221 | 73 | 2 | 29 | 249 | 1 | 214 | 2.06e-103 | 301 |
| MS.gene000372.t1 | MTR_7g102990 | 69.492 | 177 | 54 | 0 | 50 | 226 | 18 | 194 | 9.77e-94 | 277 |
| MS.gene000372.t1 | MTR_8g104410 | 37.545 | 277 | 151 | 7 | 33 | 300 | 736 | 999 | 1.77e-57 | 199 |
| MS.gene000372.t1 | MTR_8g104410 | 37.545 | 277 | 151 | 7 | 33 | 300 | 972 | 1235 | 3.08e-57 | 199 |
| MS.gene000372.t1 | MTR_6g083900 | 38.163 | 283 | 152 | 7 | 30 | 301 | 956 | 1226 | 2.26e-54 | 190 |
| MS.gene000372.t1 | MTR_4g107440 | 36.823 | 277 | 150 | 8 | 26 | 297 | 1013 | 1269 | 1.85e-50 | 179 |
| MS.gene000372.t1 | MTR_1g010170 | 55.769 | 52 | 18 | 1 | 1 | 47 | 1 | 52 | 4.21e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000372.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene000372.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene000372.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene000372.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene000372.t1 | AT5G25560 | 64.333 | 300 | 90 | 3 | 14 | 301 | 24 | 318 | 4.98e-142 | 403 |
| MS.gene000372.t1 | AT5G25560 | 65.172 | 290 | 89 | 3 | 14 | 301 | 24 | 303 | 2.60e-139 | 395 |
| MS.gene000372.t1 | AT5G22920 | 66.797 | 256 | 85 | 0 | 45 | 300 | 16 | 271 | 3.07e-134 | 382 |
| MS.gene000372.t1 | AT5G22920 | 66.667 | 222 | 74 | 0 | 45 | 266 | 16 | 237 | 1.27e-114 | 330 |
| MS.gene000372.t1 | AT5G18650 | 56.693 | 254 | 109 | 1 | 44 | 297 | 6 | 258 | 3.09e-105 | 308 |
| MS.gene000372.t1 | AT3G62970 | 52.416 | 269 | 125 | 3 | 30 | 298 | 10 | 275 | 9.58e-102 | 300 |
| MS.gene000372.t1 | AT3G62970 | 53.219 | 233 | 107 | 2 | 30 | 262 | 10 | 240 | 4.58e-91 | 271 |
| MS.gene000372.t1 | AT3G62970 | 52.915 | 223 | 103 | 2 | 30 | 252 | 10 | 230 | 6.85e-86 | 258 |
| MS.gene000372.t1 | AT1G74770 | 38.851 | 296 | 155 | 8 | 7 | 297 | 983 | 1257 | 5.84e-60 | 206 |
| MS.gene000372.t1 | AT3G18290 | 38.732 | 284 | 148 | 8 | 30 | 301 | 974 | 1243 | 1.80e-57 | 199 |
| MS.gene000372.t1 | AT1G18910 | 40.727 | 275 | 139 | 8 | 27 | 297 | 998 | 1252 | 6.53e-57 | 198 |
| MS.gene000372.t1 | AT1G74770 | 37.917 | 240 | 123 | 8 | 7 | 241 | 983 | 1201 | 4.50e-43 | 158 |
Find 62 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAAGGATACATGGAATA+TGG | 0.235762 | 1.1:-30972067 | MS.gene000372:CDS |
| ACACCACAGTTAATACAATT+TGG | 0.247115 | 1.1:+30970918 | None:intergenic |
| TCTCGTCTGTCGTGTGTTAT+AGG | 0.263330 | 1.1:+30969001 | None:intergenic |
| AAGGATTCCAGATTTGATTT+TGG | 0.266935 | 1.1:+30972136 | None:intergenic |
| TTGGAGGATTAACGTCTTCT+TGG | 0.305325 | 1.1:+30972155 | None:intergenic |
| CTGTGATATGTCAAGGGTTT+GGG | 0.325412 | 1.1:-30969524 | MS.gene000372:CDS |
| ACCGGAGAAGATGCCGAATC+AGG | 0.341031 | 1.1:-30971949 | MS.gene000372:CDS |
| ACAAATGATTTGCAAGATAA+AGG | 0.341490 | 1.1:-30972082 | MS.gene000372:CDS |
| TGAGCAATACCAAAATAAAA+TGG | 0.342214 | 1.1:-30969464 | MS.gene000372:intron |
| TATTAACTGTGGTGTTTGTA+TGG | 0.349579 | 1.1:-30970910 | MS.gene000372:CDS |
| CACCTGTTTGACTTGGTGTC+GGG | 0.359703 | 1.1:+30971662 | None:intergenic |
| GTCAAGGGTTTGGGAGAGAT+TGG | 0.368404 | 1.1:-30969515 | MS.gene000372:CDS |
| TAATCCTCCAAAATCAAATC+TGG | 0.375712 | 1.1:-30972143 | MS.gene000372:CDS |
| TGGAGGATTAACGTCTTCTT+GGG | 0.398592 | 1.1:+30972156 | None:intergenic |
| TCTGTGATATGTCAAGGGTT+TGG | 0.400427 | 1.1:-30969525 | MS.gene000372:CDS |
| TTGTTGCTTCTCAACTCTGC+TGG | 0.435891 | 1.1:-30970108 | MS.gene000372:CDS |
| TGATTGCCCCGTGTGTTTCG+AGG | 0.440556 | 1.1:-30970048 | MS.gene000372:intron |
| TCAAATCTGGAATCCTTGCC+TGG | 0.447006 | 1.1:-30972130 | MS.gene000372:CDS |
| GATTCACTTGATGCTTCTCC+AGG | 0.447764 | 1.1:+30972112 | None:intergenic |
| CCCTGATTCGGCATCTTCTC+CGG | 0.448395 | 1.1:+30971948 | None:intergenic |
| GCCCCGACACCAAGTCAAAC+AGG | 0.459750 | 1.1:-30971664 | MS.gene000372:intron |
| TGCAACAAGGAGCCCTGATT+CGG | 0.470133 | 1.1:+30971936 | None:intergenic |
| ATAAAGGATACATGGAATAT+GGG | 0.477054 | 1.1:-30972066 | MS.gene000372:intron |
| GCGGAAACACCGGTCATGTT+CGG | 0.481081 | 1.1:-30969061 | MS.gene000372:CDS |
| GTAATGGCTGTGGAATTTGC+AGG | 0.495528 | 1.1:-30970666 | MS.gene000372:intron |
| CAGAACGACTTCGAACATAG+AGG | 0.501864 | 1.1:+30969544 | None:intergenic |
| TTTGCAGATGCCAACACTAC+CGG | 0.517868 | 1.1:-30971967 | MS.gene000372:intron |
| ACTTGATGCTTCTCCAGGCA+AGG | 0.518546 | 1.1:+30972117 | None:intergenic |
| GGCATCTTCTCCGGTAGTGT+TGG | 0.528892 | 1.1:+30971957 | None:intergenic |
| CCGGAGAAGATGCCGAATCA+GGG | 0.533742 | 1.1:-30971948 | MS.gene000372:CDS |
| AAGCAGCAGTACCATTGTAA+TGG | 0.540337 | 1.1:-30970682 | MS.gene000372:CDS |
| CAGTACCATTGTAATGGCTG+TGG | 0.543474 | 1.1:-30970676 | MS.gene000372:CDS |
| TGCAATGACTGCGGAAACAC+CGG | 0.544929 | 1.1:-30969071 | MS.gene000372:CDS |
| ACCTGTTTGACTTGGTGTCG+GGG | 0.548265 | 1.1:+30971663 | None:intergenic |
| ATTAACTGTGGTGTTTGTAT+GGG | 0.551930 | 1.1:-30970909 | MS.gene000372:CDS |
| AACAGTCACACCTGTGTGGA+AGG | 0.553647 | 1.1:-30970083 | MS.gene000372:CDS |
| AAAATGGAACCGAACATGAC+CGG | 0.555237 | 1.1:+30969052 | None:intergenic |
| ACACCTGTTTGACTTGGTGT+CGG | 0.555973 | 1.1:+30971661 | None:intergenic |
| AGTCGTTCTGTGATATGTCA+AGG | 0.560608 | 1.1:-30969531 | MS.gene000372:CDS |
| TGTTTCCGCAGTCATTGCAC+AGG | 0.575987 | 1.1:+30969075 | None:intergenic |
| TTTGCAAGATAAAGGATACA+TGG | 0.576830 | 1.1:-30972074 | MS.gene000372:CDS |
| ACTTTGTGCAACTGAACAAG+AGG | 0.578809 | 1.1:-30971507 | MS.gene000372:intron |
| TGTTATAGGAGTTGCAGTTG+AGG | 0.581082 | 1.1:+30969015 | None:intergenic |
| TTCTTCCATTGTAACAAGTG+TGG | 0.583354 | 1.1:-30970236 | MS.gene000372:intron |
| AAATGTTACCTCGAAACACA+CGG | 0.583489 | 1.1:+30970040 | None:intergenic |
| AATGTTACCTCGAAACACAC+GGG | 0.588310 | 1.1:+30970041 | None:intergenic |
| GTCGTTCTGTGATATGTCAA+GGG | 0.590443 | 1.1:-30969530 | MS.gene000372:CDS |
| GCTTACCACACTTGTTACAA+TGG | 0.603038 | 1.1:+30970231 | None:intergenic |
| ATGAAATGAGAGAACATCAC+CGG | 0.612682 | 1.1:-30969662 | MS.gene000372:intron |
| TTATGGATTGTATGTCCGCA+CGG | 0.613243 | 1.1:+30969696 | None:intergenic |
| AGCTTGTATCATGGGTGATG+TGG | 0.616132 | 1.1:-30972218 | None:intergenic |
| TTGCCGCCATTGTCACAATG+AGG | 0.627282 | 1.1:-30971900 | MS.gene000372:CDS |
| TTGCCTCATTGTGACAATGG+CGG | 0.629473 | 1.1:+30971897 | None:intergenic |
| AGAACGACTTCGAACATAGA+GGG | 0.631596 | 1.1:+30969545 | None:intergenic |
| CAGCCAAATTGTATTAACTG+TGG | 0.635426 | 1.1:-30970921 | MS.gene000372:CDS |
| ATGCATTGCTCCTTCCACAC+AGG | 0.659665 | 1.1:+30970073 | None:intergenic |
| GAAATTGTTGTTATGCCGTG+CGG | 0.662393 | 1.1:-30969711 | MS.gene000372:CDS |
| TATAACACACGACAGACGAG+AGG | 0.677837 | 1.1:-30968999 | MS.gene000372:CDS |
| ATGTTACCTCGAAACACACG+GGG | 0.693054 | 1.1:+30970042 | None:intergenic |
| AAATTCCACAGCCATTACAA+TGG | 0.701862 | 1.1:+30970671 | None:intergenic |
| TGGATCCTGTGCAATGACTG+CGG | 0.725144 | 1.1:-30969080 | MS.gene000372:CDS |
| GGAAAACAGTCACACCTGTG+TGG | 0.726921 | 1.1:-30970087 | MS.gene000372:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAGTATATAATCAT+AGG | + | chr1.1:30969860-30969879 | None:intergenic | 10.0% |
| !! | AAATTATTCTATTAGAATTA+AGG | + | chr1.1:30969649-30969668 | None:intergenic | 10.0% |
| !!! | ATAAAGACTAATTTTATAAA+AGG | + | chr1.1:30969217-30969236 | None:intergenic | 10.0% |
| !!! | TGTGATATTTTTAAATTTTT+GGG | - | chr1.1:30969446-30969465 | MS.gene000372:intron | 10.0% |
| !!! | TTGTGATATTTTTAAATTTT+TGG | - | chr1.1:30969445-30969464 | MS.gene000372:intron | 10.0% |
| !! | ATAGTTATGAATATAATTCA+CGG | - | chr1.1:30971266-30971285 | MS.gene000372:intron | 15.0% |
| !! | ATTATATTCATAACTATTAC+AGG | + | chr1.1:30971263-30971282 | None:intergenic | 15.0% |
| !! | TACTGATATTGAATTTATAA+AGG | - | chr1.1:30969765-30969784 | MS.gene000372:intron | 15.0% |
| !!! | ACTGATACAATTATTTTTTA+TGG | + | chr1.1:30971319-30971338 | None:intergenic | 15.0% |
| !!! | GCAAATGATAAATATTTTAT+GGG | + | chr1.1:30970725-30970744 | None:intergenic | 15.0% |
| !!! | GTGATATTTTTAAATTTTTG+GGG | - | chr1.1:30969447-30969466 | MS.gene000372:intron | 15.0% |
| !!! | TGCAAATGATAAATATTTTA+TGG | + | chr1.1:30970726-30970745 | None:intergenic | 15.0% |
| !! | AAAAACAAAATGAAACAAAG+GGG | + | chr1.1:30970648-30970667 | None:intergenic | 20.0% |
| !! | AAATTACGCTTATGAAAAAT+AGG | + | chr1.1:30969350-30969369 | None:intergenic | 20.0% |
| !! | AACAAATTGCATCATTATTA+GGG | - | chr1.1:30970597-30970616 | MS.gene000372:intron | 20.0% |
| !! | AATAAGAACAATATTCAGAA+AGG | + | chr1.1:30971607-30971626 | None:intergenic | 20.0% |
| !! | ATAAGAACAATATTCAGAAA+GGG | + | chr1.1:30971606-30971625 | None:intergenic | 20.0% |
| !! | ATATCAAAATCAATCAGTTA+AGG | + | chr1.1:30970917-30970936 | None:intergenic | 20.0% |
| !! | ATTTGTGGATATTTCAATTA+AGG | + | chr1.1:30969588-30969607 | None:intergenic | 20.0% |
| !! | CATGCATAAAGAAAATAAAA+TGG | - | chr1.1:30970003-30970022 | MS.gene000372:intron | 20.0% |
| !! | CTTACATGTATATAATCATA+GGG | + | chr1.1:30969981-30970000 | None:intergenic | 20.0% |
| !! | GAAAAACAAAATGAAACAAA+GGG | + | chr1.1:30970649-30970668 | None:intergenic | 20.0% |
| !! | TAAAAAATAAGTAATGAGAC+CGG | + | chr1.1:30969389-30969408 | None:intergenic | 20.0% |
| !! | TAACAAATTGCATCATTATT+AGG | - | chr1.1:30970596-30970615 | MS.gene000372:intron | 20.0% |
| !! | TGAAAAACAAAATGAAACAA+AGG | + | chr1.1:30970650-30970669 | None:intergenic | 20.0% |
| !! | TGATATTGAATTTATAAAGG+AGG | - | chr1.1:30969768-30969787 | MS.gene000372:intron | 20.0% |
| !!! | ATGCTAGAGTTATTTTAAAT+TGG | - | chr1.1:30971375-30971394 | MS.gene000372:intron | 20.0% |
| !!! | GGTATTTATTTTTTTTCTGT+TGG | - | chr1.1:30971893-30971912 | MS.gene000372:intron | 20.0% |
| !!! | TAAGTCTGTTTTTATATTTC+TGG | - | chr1.1:30971412-30971431 | MS.gene000372:intron | 20.0% |
| !!! | TATTGGCATTTTAAATTCAA+GGG | - | chr1.1:30972074-30972093 | MS.gene000372:CDS | 20.0% |
| !!! | TGATAAATATTTTATGGGAT+CGG | + | chr1.1:30970720-30970739 | None:intergenic | 20.0% |
| !!! | TTATTGGCATTTTAAATTCA+AGG | - | chr1.1:30972073-30972092 | MS.gene000372:CDS | 20.0% |
| !!! | TTATTTGTGGTTTGTTTTAT+TGG | - | chr1.1:30972057-30972076 | MS.gene000372:intron | 20.0% |
| ! | AAAACAAAATGAAACAAAGG+GGG | + | chr1.1:30970647-30970666 | None:intergenic | 25.0% |
| ! | AGATATCTGCATCATATAAA+AGG | + | chr1.1:30970501-30970520 | None:intergenic | 25.0% |
| ! | AGTATAAATAACCAACAGTA+AGG | + | chr1.1:30971781-30971800 | None:intergenic | 25.0% |
| ! | ATAAAGGATACATGGAATAT+GGG | - | chr1.1:30969137-30969156 | MS.gene000372:intron | 25.0% |
| ! | CAAAATAGCAAGTACAAATA+TGG | + | chr1.1:30970823-30970842 | None:intergenic | 25.0% |
| ! | CAAATAAATCCCTAAAAACA+GGG | + | chr1.1:30970781-30970800 | None:intergenic | 25.0% |
| ! | GCTTACATGTATATAATCAT+AGG | + | chr1.1:30969982-30970001 | None:intergenic | 25.0% |
| ! | TATGCAACATTAGAACAAAA+AGG | + | chr1.1:30970387-30970406 | None:intergenic | 25.0% |
| ! | TCATTGAGAAAAACAAAGAT+TGG | + | chr1.1:30970158-30970177 | None:intergenic | 25.0% |
| ! | TGAGCAATACCAAAATAAAA+TGG | - | chr1.1:30971739-30971758 | MS.gene000372:intron | 25.0% |
| !! | ACAAATGATTTGCAAGATAA+AGG | - | chr1.1:30969121-30969140 | MS.gene000372:intron | 25.0% |
| !! | ACTAATTTTATAAAAGGAGC+AGG | + | chr1.1:30969211-30969230 | None:intergenic | 25.0% |
| !! | GGTAACATTTACAATTTTCA+TGG | - | chr1.1:30971176-30971195 | MS.gene000372:intron | 25.0% |
| !! | TAATTTTGTGCACTTTATTC+AGG | - | chr1.1:30969663-30969682 | MS.gene000372:CDS | 25.0% |
| !! | TTTCATCTATACAGCTTTTA+TGG | + | chr1.1:30971527-30971546 | None:intergenic | 25.0% |
| !!! | ATTTTATTTTGGTATTGCTC+AGG | + | chr1.1:30971740-30971759 | None:intergenic | 25.0% |
| AAAATCAATCAGTTAAGGCA+AGG | + | chr1.1:30970912-30970931 | None:intergenic | 30.0% | |
| AATTGCATCATTATTAGGGA+TGG | - | chr1.1:30970601-30970620 | MS.gene000372:intron | 30.0% | |
| ACACCACAGTTAATACAATT+TGG | + | chr1.1:30970288-30970307 | None:intergenic | 30.0% | |
| ACGCTTATGAAAAATAGGTA+AGG | + | chr1.1:30969345-30969364 | None:intergenic | 30.0% | |
| ATAAAAACACCTGTTTGACT+TGG | + | chr1.1:30969551-30969570 | None:intergenic | 30.0% | |
| ATGATGTGAGTATTAATCCT+AGG | - | chr1.1:30970352-30970371 | MS.gene000372:intron | 30.0% | |
| ATTAACTGTGGTGTTTGTAT+GGG | - | chr1.1:30970294-30970313 | MS.gene000372:intron | 30.0% | |
| CCAAATAAATCCCTAAAAAC+AGG | + | chr1.1:30970782-30970801 | None:intergenic | 30.0% | |
| CGTTTGACATTCATGATTAT+AGG | - | chr1.1:30971072-30971091 | MS.gene000372:intron | 30.0% | |
| CTATACTTGATATGAATGAC+AGG | + | chr1.1:30971943-30971962 | None:intergenic | 30.0% | |
| CTGCATCATATAAAAGGAAA+CGG | + | chr1.1:30970495-30970514 | None:intergenic | 30.0% | |
| GATAAAGGATACATGGAATA+TGG | - | chr1.1:30969136-30969155 | MS.gene000372:intron | 30.0% | |
| GTAGGATTTGCCAAATATTA+AGG | + | chr1.1:30971921-30971940 | None:intergenic | 30.0% | |
| TAATCCTCCAAAATCAAATC+TGG | - | chr1.1:30969060-30969079 | MS.gene000372:CDS | 30.0% | |
| TAGACTAATCAAAACGCATA+TGG | + | chr1.1:30971014-30971033 | None:intergenic | 30.0% | |
| TATTAACTGTGGTGTTTGTA+TGG | - | chr1.1:30970293-30970312 | MS.gene000372:intron | 30.0% | |
| TCAAAAATCTCATTGCAACA+AGG | + | chr1.1:30969283-30969302 | None:intergenic | 30.0% | |
| TGGATAGAATACTAAGAACT+AGG | - | chr1.1:30971872-30971891 | MS.gene000372:intron | 30.0% | |
| TTTGCAAGATAAAGGATACA+TGG | - | chr1.1:30969129-30969148 | MS.gene000372:intron | 30.0% | |
| TTTGTTTCATATCATTCAGC+CGG | - | chr1.1:30969367-30969386 | MS.gene000372:intron | 30.0% | |
| ! | AAATATTTTATGGGATCGGA+GGG | + | chr1.1:30970716-30970735 | None:intergenic | 30.0% |
| ! | TAAATATTTTATGGGATCGG+AGG | + | chr1.1:30970717-30970736 | None:intergenic | 30.0% |
| ! | TTCATGTCTTATTGTTGCTT+TGG | - | chr1.1:30971979-30971998 | MS.gene000372:intron | 30.0% |
| !! | AACAGGTGTTTTTATCAACT+TGG | - | chr1.1:30969556-30969575 | MS.gene000372:CDS | 30.0% |
| !! | AAGGATTCCAGATTTGATTT+TGG | + | chr1.1:30969070-30969089 | None:intergenic | 30.0% |
| !! | ACAGGTGTTTTTATCAACTT+GGG | - | chr1.1:30969557-30969576 | MS.gene000372:CDS | 30.0% |
| !! | ATTTGTTATGTTCCAGACTT+AGG | + | chr1.1:30970584-30970603 | None:intergenic | 30.0% |
| !! | GAGAACTGACCATTTTATTT+TGG | + | chr1.1:30971751-30971770 | None:intergenic | 30.0% |
| !! | TCTGTTGGTTCCTTAATATT+TGG | - | chr1.1:30971908-30971927 | MS.gene000372:CDS | 30.0% |
| !! | TGATGCTTTTTACTACTTTC+AGG | - | chr1.1:30970257-30970276 | MS.gene000372:CDS | 30.0% |
| !!! | CCTGTTTTTAGGGATTTATT+TGG | - | chr1.1:30970779-30970798 | MS.gene000372:intron | 30.0% |
| !!! | GATGGTAACATGTTTTAATG+CGG | - | chr1.1:30970619-30970638 | MS.gene000372:intron | 30.0% |
| !!! | GTCTGTTTTTATATTTCTGG+AGG | - | chr1.1:30971415-30971434 | MS.gene000372:intron | 30.0% |
| !!! | TCAACTTTACCCTGTTTTTA+GGG | - | chr1.1:30970769-30970788 | MS.gene000372:intron | 30.0% |
| !!! | TGATATTTTTTGCACAGAAC+TGG | - | chr1.1:30970931-30970950 | MS.gene000372:intron | 30.0% |
| AAATGTTACCTCGAAACACA+CGG | + | chr1.1:30971166-30971185 | None:intergenic | 35.0% | |
| AAATTCCACAGCCATTACAA+TGG | + | chr1.1:30970535-30970554 | None:intergenic | 35.0% | |
| ACTTGATATGAATGACAGGT+AGG | + | chr1.1:30971939-30971958 | None:intergenic | 35.0% | |
| ATGAAATGAGAGAACATCAC+CGG | - | chr1.1:30971541-30971560 | MS.gene000372:intron | 35.0% | |
| CAAAAAGGAATCTCATTCCT+AGG | + | chr1.1:30970372-30970391 | None:intergenic | 35.0% | |
| CAGCCAAATTGTATTAACTG+TGG | - | chr1.1:30970282-30970301 | MS.gene000372:intron | 35.0% | |
| CGATATGCACATGTATGTAT+TGG | - | chr1.1:30971852-30971871 | MS.gene000372:intron | 35.0% | |
| CTCTCAATGCAAATTGAAGA+AGG | + | chr1.1:30972034-30972053 | None:intergenic | 35.0% | |
| CTGTTAAGCTTATTACTGTC+TGG | - | chr1.1:30970031-30970050 | MS.gene000372:intron | 35.0% | |
| CTTGTATTTGCTTGTATACC+AGG | - | chr1.1:30971627-30971646 | MS.gene000372:intron | 35.0% | |
| CTTGTTCATATGCTTCTTTC+TGG | - | chr1.1:30969166-30969185 | MS.gene000372:intron | 35.0% | |
| GAACAATATTCAGAAAGGGA+TGG | + | chr1.1:30971602-30971621 | None:intergenic | 35.0% | |
| GAATATAATACATCCCCACT+AGG | - | chr1.1:30969916-30969935 | MS.gene000372:intron | 35.0% | |
| GCAGGTATGAAATGATAATC+TGG | - | chr1.1:30970555-30970574 | MS.gene000372:intron | 35.0% | |
| GCATTGAGAGTAGTTATTTG+TGG | - | chr1.1:30972044-30972063 | MS.gene000372:intron | 35.0% | |
| GTCCATGAAATAACAGGAAA+AGG | + | chr1.1:30969618-30969637 | None:intergenic | 35.0% | |
| TAACCAACAGTAAGGAAAAG+AGG | + | chr1.1:30971773-30971792 | None:intergenic | 35.0% | |
| TACCTTGTCCATGAAATAAC+AGG | + | chr1.1:30969624-30969643 | None:intergenic | 35.0% | |
| TCATGGTTTAGAAACAGCTT+AGG | - | chr1.1:30971193-30971212 | MS.gene000372:intron | 35.0% | |
| TTAAGCTTATTACTGTCTGG+AGG | - | chr1.1:30970034-30970053 | MS.gene000372:intron | 35.0% | |
| TTCTTCCATTGTAACAAGTG+TGG | - | chr1.1:30970967-30970986 | MS.gene000372:intron | 35.0% | |
| ! | ATAATCTGGTTTCCTAAGTC+TGG | - | chr1.1:30970569-30970588 | MS.gene000372:intron | 35.0% |
| ! | GGAAAAGGTGCAAAAATTTG+TGG | + | chr1.1:30969603-30969622 | None:intergenic | 35.0% |
| !! | ATATAATCATAGGGAGCACT+AGG | + | chr1.1:30969972-30969991 | None:intergenic | 35.0% |
| !! | ATGTCTTATTGTTGCTTTGG+AGG | - | chr1.1:30971982-30972001 | MS.gene000372:intron | 35.0% |
| !! | CAGGTGTTTTTATCAACTTG+GGG | - | chr1.1:30969558-30969577 | MS.gene000372:intron | 35.0% |
| !! | CTCAACTTTACCCTGTTTTT+AGG | - | chr1.1:30970768-30970787 | MS.gene000372:intron | 35.0% |
| !! | GATTCCAGATTTGATTTTGG+AGG | + | chr1.1:30969067-30969086 | None:intergenic | 35.0% |
| !! | TTCCTGTTATTTCATGGACA+AGG | - | chr1.1:30969619-30969638 | MS.gene000372:intron | 35.0% |
| !!! | CACCTTTTCCTGTTATTTCA+TGG | - | chr1.1:30969613-30969632 | MS.gene000372:intron | 35.0% |
| !!! | TATTTTTTGCACAGAACTGG+TGG | - | chr1.1:30970934-30970953 | MS.gene000372:intron | 35.0% |
| AAAATGGAACCGAACATGAC+CGG | + | chr1.1:30972154-30972173 | None:intergenic | 40.0% | |
| AAACAGTTTCAGCCAGCATA+TGG | + | chr1.1:30970128-30970147 | None:intergenic | 40.0% | |
| AAGCAGCAGTACCATTGTAA+TGG | - | chr1.1:30970521-30970540 | MS.gene000372:intron | 40.0% | |
| AATGTTACCTCGAAACACAC+GGG | + | chr1.1:30971165-30971184 | None:intergenic | 40.0% | |
| ACAGGGTAAAGTTGAGTACT+AGG | + | chr1.1:30970764-30970783 | None:intergenic | 40.0% | |
| ACTTTGTGCAACTGAACAAG+AGG | - | chr1.1:30969696-30969715 | MS.gene000372:CDS | 40.0% | |
| AGAACGACTTCGAACATAGA+GGG | + | chr1.1:30971661-30971680 | None:intergenic | 40.0% | |
| AGTCGTTCTGTGATATGTCA+AGG | - | chr1.1:30971672-30971691 | MS.gene000372:CDS | 40.0% | |
| ATAATACATCCCCACTAGGT+TGG | - | chr1.1:30969920-30969939 | MS.gene000372:intron | 40.0% | |
| ATCAGTTAAGGCAAGGCAAA+AGG | + | chr1.1:30970905-30970924 | None:intergenic | 40.0% | |
| CTGATTGTGTTACCTGAAAC+AGG | - | chr1.1:30972098-30972117 | MS.gene000372:CDS | 40.0% | |
| CTGTGATATGTCAAGGGTTT+GGG | - | chr1.1:30971679-30971698 | MS.gene000372:CDS | 40.0% | |
| GCAAGGAATTAGAGTCTACA+AGG | + | chr1.1:30969950-30969969 | None:intergenic | 40.0% | |
| GTCGTTCTGTGATATGTCAA+GGG | - | chr1.1:30971673-30971692 | MS.gene000372:CDS | 40.0% | |
| TACACTAGTTATAGACTCGC+TGG | + | chr1.1:30970468-30970487 | None:intergenic | 40.0% | |
| TCTGTGATATGTCAAGGGTT+TGG | - | chr1.1:30971678-30971697 | MS.gene000372:CDS | 40.0% | |
| TGGAGGATTAACGTCTTCTT+GGG | + | chr1.1:30969050-30969069 | None:intergenic | 40.0% | |
| TGTGTTACCTGAAACAGGTT+TGG | - | chr1.1:30972103-30972122 | MS.gene000372:CDS | 40.0% | |
| TGTTATAGGAGTTGCAGTTG+AGG | + | chr1.1:30972191-30972210 | None:intergenic | 40.0% | |
| TTGGAGGATTAACGTCTTCT+TGG | + | chr1.1:30969051-30969070 | None:intergenic | 40.0% | |
| ! | ATTCCAGATGTTTTGCGCTA+TGG | - | chr1.1:30970059-30970078 | MS.gene000372:CDS | 40.0% |
| ! | CTTTTGCCTCATTGTGACAA+TGG | + | chr1.1:30969312-30969331 | None:intergenic | 40.0% |
| ! | GAAATTGTTGTTATGCCGTG+CGG | - | chr1.1:30971492-30971511 | MS.gene000372:intron | 40.0% |
| ! | GCTTACCACACTTGTTACAA+TGG | + | chr1.1:30970975-30970994 | None:intergenic | 40.0% |
| ! | TCATGTTCGGTTCCATTTTG+TGG | - | chr1.1:30972155-30972174 | MS.gene000372:CDS | 40.0% |
| ! | TCTCCTCTTTTCCTTACTGT+TGG | - | chr1.1:30971767-30971786 | MS.gene000372:intron | 40.0% |
| ! | TTATGGATTGTATGTCCGCA+CGG | + | chr1.1:30971510-30971529 | None:intergenic | 40.0% |
| ! | TTTTGGTATTGCTCAGGCAT+TGG | + | chr1.1:30971734-30971753 | None:intergenic | 40.0% |
| !!! | GGCATTTTAGAGCCACAAAA+TGG | + | chr1.1:30972170-30972189 | None:intergenic | 40.0% |
| ACAGGATCCAAACCTGTTTC+AGG | + | chr1.1:30972113-30972132 | None:intergenic | 45.0% | |
| ATGTTACCTCGAAACACACG+GGG | + | chr1.1:30971164-30971183 | None:intergenic | 45.0% | |
| CAGAACGACTTCGAACATAG+AGG | + | chr1.1:30971662-30971681 | None:intergenic | 45.0% | |
| CAGTACCATTGTAATGGCTG+TGG | - | chr1.1:30970527-30970546 | MS.gene000372:intron | 45.0% | |
| CATAGCACAAGACCATATGC+TGG | - | chr1.1:30970113-30970132 | MS.gene000372:intron | 45.0% | |
| CTACCATAGCGCAAAACATC+TGG | + | chr1.1:30970065-30970084 | None:intergenic | 45.0% | |
| GATGGAGAACTGAAGAGACT+AGG | + | chr1.1:30971584-30971603 | None:intergenic | 45.0% | |
| GATTCACTTGATGCTTCTCC+AGG | + | chr1.1:30969094-30969113 | None:intergenic | 45.0% | |
| GCTGGCTGAAACTGTTTGAT+AGG | - | chr1.1:30970131-30970150 | MS.gene000372:intron | 45.0% | |
| GTAATGGCTGTGGAATTTGC+AGG | - | chr1.1:30970537-30970556 | MS.gene000372:intron | 45.0% | |
| TATAACACACGACAGACGAG+AGG | - | chr1.1:30972204-30972223 | MS.gene000372:CDS | 45.0% | |
| TCTCGTCTGTCGTGTGTTAT+AGG | + | chr1.1:30972205-30972224 | None:intergenic | 45.0% | |
| TTGCCTCATTGTGACAATGG+CGG | + | chr1.1:30969309-30969328 | None:intergenic | 45.0% | |
| TTTGCAGATGCCAACACTAC+CGG | - | chr1.1:30969236-30969255 | MS.gene000372:intron | 45.0% | |
| ! | ACATAGAGGGCATGTATACC+TGG | + | chr1.1:30971648-30971667 | None:intergenic | 45.0% |
| ! | ATTTTATGGGATCGGAGGGA+GGG | + | chr1.1:30970712-30970731 | None:intergenic | 45.0% |
| ! | TATTTTATGGGATCGGAGGG+AGG | + | chr1.1:30970713-30970732 | None:intergenic | 45.0% |
| ! | TCAAATCTGGAATCCTTGCC+TGG | - | chr1.1:30969073-30969092 | MS.gene000372:CDS | 45.0% |
| ! | TTGTTGCTTCTCAACTCTGC+TGG | - | chr1.1:30971095-30971114 | MS.gene000372:intron | 45.0% |
| !! | ACACCTGTTTGACTTGGTGT+CGG | + | chr1.1:30969545-30969564 | None:intergenic | 45.0% |
| !! | CAGCATATGGTCTTGTGCTA+TGG | + | chr1.1:30970115-30970134 | None:intergenic | 45.0% |
| !!! | TATATACTATATTTTTTTTT+TGG | - | chr1.1:30969865-30969884 | MS.gene000372:intron | 5.0% |
| AACAGTCACACCTGTGTGGA+AGG | - | chr1.1:30971120-30971139 | MS.gene000372:intron | 50.0% | |
| ACAAGGTGTGCCAACCTAGT+GGG | + | chr1.1:30969933-30969952 | None:intergenic | 50.0% | |
| ACTTGATGCTTCTCCAGGCA+AGG | + | chr1.1:30969089-30969108 | None:intergenic | 50.0% | |
| ATGCATTGCTCCTTCCACAC+AGG | + | chr1.1:30971133-30971152 | None:intergenic | 50.0% | |
| GGAAAACAGTCACACCTGTG+TGG | - | chr1.1:30971116-30971135 | MS.gene000372:intron | 50.0% | |
| GTCAAGGGTTTGGGAGAGAT+TGG | - | chr1.1:30971688-30971707 | MS.gene000372:CDS | 50.0% | |
| TACAAGGTGTGCCAACCTAG+TGG | + | chr1.1:30969934-30969953 | None:intergenic | 50.0% | |
| TGCAACAAGGAGCCCTGATT+CGG | + | chr1.1:30969270-30969289 | None:intergenic | 50.0% | |
| TGCAATGACTGCGGAAACAC+CGG | - | chr1.1:30972132-30972151 | MS.gene000372:CDS | 50.0% | |
| TGGATCCTGTGCAATGACTG+CGG | - | chr1.1:30972123-30972142 | MS.gene000372:CDS | 50.0% | |
| TGTTTCCGCAGTCATTGCAC+AGG | + | chr1.1:30972131-30972150 | None:intergenic | 50.0% | |
| TTGCCGCCATTGTCACAATG+AGG | - | chr1.1:30969303-30969322 | MS.gene000372:intron | 50.0% | |
| !! | ACCTGTTTGACTTGGTGTCG+GGG | + | chr1.1:30969543-30969562 | None:intergenic | 50.0% |
| !! | ATCATAGGGAGCACTAGGCA+AGG | + | chr1.1:30969967-30969986 | None:intergenic | 50.0% |
| !! | CACCTGTTTGACTTGGTGTC+GGG | + | chr1.1:30969544-30969563 | None:intergenic | 50.0% |
| ACCGGAGAAGATGCCGAATC+AGG | - | chr1.1:30969254-30969273 | MS.gene000372:intron | 55.0% | |
| CAAGGTGTGCCAACCTAGTG+GGG | + | chr1.1:30969932-30969951 | None:intergenic | 55.0% | |
| CCGGAGAAGATGCCGAATCA+GGG | - | chr1.1:30969255-30969274 | MS.gene000372:intron | 55.0% | |
| GCGGAAACACCGGTCATGTT+CGG | - | chr1.1:30972142-30972161 | MS.gene000372:CDS | 55.0% | |
| GGCATCTTCTCCGGTAGTGT+TGG | + | chr1.1:30969249-30969268 | None:intergenic | 55.0% | |
| TGATTGCCCCGTGTGTTTCG+AGG | - | chr1.1:30971155-30971174 | MS.gene000372:intron | 55.0% | |
| ! | GGAGCTTTGTGAGCACTCAC+CGG | + | chr1.1:30971563-30971582 | None:intergenic | 55.0% |
| !! | CCCTGATTCGGCATCTTCTC+CGG | + | chr1.1:30969258-30969277 | None:intergenic | 55.0% |
| GCCCCGACACCAAGTCAAAC+AGG | - | chr1.1:30969539-30969558 | MS.gene000372:CDS | 60.0% | |
| TTATGGGATCGGAGGGAGGG+TGG | + | chr1.1:30970709-30970728 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 30968995 | 30972230 | 30968995 | ID=MS.gene000372 |
| chr1.1 | mRNA | 30968995 | 30972230 | 30968995 | ID=MS.gene000372.t1;Parent=MS.gene000372 |
| chr1.1 | exon | 30972067 | 30972230 | 30972067 | ID=MS.gene000372.t1.exon1;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30972067 | 30972230 | 30972067 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30971895 | 30971982 | 30971895 | ID=MS.gene000372.t1.exon2;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30971895 | 30971982 | 30971895 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30971665 | 30971724 | 30971665 | ID=MS.gene000372.t1.exon3;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30971665 | 30971724 | 30971665 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30971508 | 30971540 | 30971508 | ID=MS.gene000372.t1.exon4;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30971508 | 30971540 | 30971508 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30970869 | 30970946 | 30970869 | ID=MS.gene000372.t1.exon5;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30970869 | 30970946 | 30970869 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30970667 | 30970710 | 30970667 | ID=MS.gene000372.t1.exon6;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30970667 | 30970710 | 30970667 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30970237 | 30970277 | 30970237 | ID=MS.gene000372.t1.exon7;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30970237 | 30970277 | 30970237 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30970049 | 30970131 | 30970049 | ID=MS.gene000372.t1.exon8;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30970049 | 30970131 | 30970049 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30969663 | 30969754 | 30969663 | ID=MS.gene000372.t1.exon9;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30969663 | 30969754 | 30969663 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30969465 | 30969576 | 30969465 | ID=MS.gene000372.t1.exon10;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30969465 | 30969576 | 30969465 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| chr1.1 | exon | 30968995 | 30969105 | 30968995 | ID=MS.gene000372.t1.exon11;Parent=MS.gene000372.t1 |
| chr1.1 | CDS | 30968995 | 30969105 | 30968995 | ID=cds.MS.gene000372.t1;Parent=MS.gene000372.t1 |
| Gene Sequence |
| Protein sequence |
