Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03701.t1 | RHN60647.1 | 96.8 | 281 | 9 | 0 | 1 | 281 | 40 | 320 | 5.20E-144 | 520.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03701.t1 | Q9FFB6 | 70.3 | 266 | 78 | 1 | 16 | 280 | 22 | 287 | 6.8e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03701.t1 | A0A396ICV1 | 96.8 | 281 | 9 | 0 | 1 | 281 | 40 | 320 | 3.8e-144 | 520.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014764 | MS.gene03701 | PPI |
| MS.gene072976 | MS.gene03701 | PPI |
| MS.gene46900 | MS.gene03701 | PPI |
| MS.gene41351 | MS.gene03701 | PPI |
| MS.gene015919 | MS.gene03701 | PPI |
| MS.gene000372 | MS.gene03701 | PPI |
| MS.gene00991 | MS.gene03701 | PPI |
| MS.gene004457 | MS.gene03701 | PPI |
| MS.gene96207 | MS.gene03701 | PPI |
| MS.gene43374 | MS.gene03701 | PPI |
| MS.gene54097 | MS.gene03701 | PPI |
| MS.gene002763 | MS.gene03701 | PPI |
| MS.gene46902 | MS.gene03701 | PPI |
| MS.gene86321 | MS.gene03701 | PPI |
| MS.gene53701 | MS.gene03701 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03701.t1 | MTR_4g057310 | 96.403 | 278 | 10 | 0 | 4 | 281 | 1 | 278 | 0.0 | 548 |
| MS.gene03701.t1 | MTR_4g057310 | 96.774 | 217 | 7 | 0 | 1 | 217 | 1 | 217 | 7.66e-156 | 433 |
| MS.gene03701.t1 | MTR_7g102990 | 69.962 | 263 | 76 | 1 | 17 | 279 | 20 | 279 | 2.74e-144 | 407 |
| MS.gene03701.t1 | MTR_3g108240 | 71.774 | 248 | 70 | 0 | 19 | 266 | 62 | 309 | 5.00e-138 | 392 |
| MS.gene03701.t1 | MTR_3g108240 | 67.939 | 262 | 84 | 0 | 5 | 266 | 46 | 307 | 8.03e-137 | 389 |
| MS.gene03701.t1 | MTR_1g047740 | 64.103 | 273 | 91 | 2 | 1 | 266 | 29 | 301 | 1.22e-134 | 383 |
| MS.gene03701.t1 | MTR_2g020040 | 58.704 | 247 | 101 | 1 | 18 | 264 | 15 | 260 | 6.81e-112 | 324 |
| MS.gene03701.t1 | MTR_1g010150 | 67.317 | 205 | 67 | 0 | 62 | 266 | 1 | 205 | 2.22e-109 | 315 |
| MS.gene03701.t1 | MTR_7g102990 | 72.000 | 175 | 49 | 0 | 17 | 191 | 20 | 194 | 2.34e-98 | 288 |
| MS.gene03701.t1 | MTR_8g104410 | 39.464 | 261 | 138 | 7 | 19 | 273 | 761 | 1007 | 1.87e-55 | 192 |
| MS.gene03701.t1 | MTR_8g104410 | 39.464 | 261 | 138 | 7 | 19 | 273 | 997 | 1243 | 2.63e-55 | 192 |
| MS.gene03701.t1 | MTR_6g083900 | 40.541 | 259 | 135 | 8 | 19 | 271 | 986 | 1231 | 3.35e-52 | 183 |
| MS.gene03701.t1 | MTR_4g107440 | 39.683 | 252 | 132 | 8 | 19 | 264 | 1034 | 1271 | 9.71e-52 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03701.t1 | AT5G22920 | 68.539 | 267 | 83 | 1 | 15 | 280 | 21 | 287 | 1.90e-141 | 400 |
| MS.gene03701.t1 | AT5G25560 | 64.113 | 248 | 89 | 0 | 19 | 266 | 61 | 308 | 9.06e-125 | 358 |
| MS.gene03701.t1 | AT5G25560 | 64.113 | 248 | 89 | 0 | 19 | 266 | 61 | 308 | 9.06e-125 | 358 |
| MS.gene03701.t1 | AT5G25560 | 64.113 | 248 | 89 | 0 | 19 | 266 | 61 | 308 | 9.06e-125 | 358 |
| MS.gene03701.t1 | AT5G25560 | 64.113 | 248 | 89 | 0 | 19 | 266 | 61 | 308 | 9.06e-125 | 358 |
| MS.gene03701.t1 | AT5G25560 | 59.848 | 264 | 106 | 0 | 3 | 266 | 40 | 303 | 1.07e-121 | 350 |
| MS.gene03701.t1 | AT5G25560 | 61.628 | 258 | 89 | 1 | 19 | 266 | 61 | 318 | 1.22e-121 | 350 |
| MS.gene03701.t1 | AT5G22920 | 70.046 | 217 | 65 | 0 | 15 | 231 | 21 | 237 | 2.25e-117 | 337 |
| MS.gene03701.t1 | AT5G18650 | 59.109 | 247 | 100 | 1 | 18 | 264 | 15 | 260 | 1.12e-111 | 323 |
| MS.gene03701.t1 | AT3G62970 | 55.285 | 246 | 108 | 2 | 19 | 264 | 33 | 276 | 1.35e-102 | 301 |
| MS.gene03701.t1 | AT3G62970 | 54.460 | 213 | 96 | 1 | 19 | 231 | 33 | 244 | 2.54e-89 | 266 |
| MS.gene03701.t1 | AT3G62970 | 55.612 | 196 | 86 | 1 | 19 | 214 | 33 | 227 | 4.87e-84 | 252 |
| MS.gene03701.t1 | AT1G74770 | 42.007 | 269 | 137 | 7 | 1 | 264 | 1005 | 1259 | 1.29e-60 | 207 |
| MS.gene03701.t1 | AT1G18910 | 42.742 | 248 | 125 | 6 | 19 | 262 | 1018 | 1252 | 1.05e-55 | 193 |
| MS.gene03701.t1 | AT3G18290 | 39.921 | 253 | 132 | 7 | 19 | 265 | 1004 | 1242 | 2.80e-53 | 186 |
| MS.gene03701.t1 | AT1G74770 | 40.909 | 220 | 111 | 7 | 1 | 215 | 1005 | 1210 | 6.29e-43 | 157 |
Find 41 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACTCTTCTTCAAATTT+TGG | 0.067213 | 4.3:-43774758 | MS.gene03701:CDS |
| TTGTATTTGCCTTGTGTTGT+AGG | 0.202677 | 4.3:+43771072 | None:intergenic |
| TCCGCGTCATGAAGTTAAAA+AGG | 0.253066 | 4.3:-43774118 | MS.gene03701:intron |
| TGAAGAAGAGTGTGTATTAG+TGG | 0.365797 | 4.3:+43774766 | None:intergenic |
| TAATTGTCCTATTTGCTTTG+AGG | 0.369079 | 4.3:-43773207 | MS.gene03701:intron |
| GTCTTTACCTCAAAGCAAAT+AGG | 0.376646 | 4.3:+43773200 | None:intergenic |
| CTTCTAGTTCATGCTCATCT+AGG | 0.388437 | 4.3:-43771042 | MS.gene03701:CDS |
| CTAGATGAGCATGAACTAGA+AGG | 0.470350 | 4.3:+43771043 | None:intergenic |
| ATCTTGTTCTGTGTCACATA+AGG | 0.475979 | 4.3:+43774001 | None:intergenic |
| CATAAACTGTGGAGTATGCT+TGG | 0.478676 | 4.3:-43773862 | MS.gene03701:CDS |
| GGAATATCATGACGATCATC+AGG | 0.490854 | 4.3:+43774138 | None:intergenic |
| TTCTAGTTCATGCTCATCTA+GGG | 0.498829 | 4.3:-43771041 | MS.gene03701:CDS |
| ATGCCCTTCTTTGATTTCGA+CGG | 0.509748 | 4.3:+43773256 | None:intergenic |
| TGATTCAGGCATTGGAGTTG+AGG | 0.511404 | 4.3:+43772715 | None:intergenic |
| GTGGAAGAACCTTGACCAAA+TGG | 0.522318 | 4.3:-43772835 | MS.gene03701:intron |
| CTTTGAGTGTGTTAAAGAGA+TGG | 0.536365 | 4.3:-43773044 | MS.gene03701:CDS |
| TATTCCGTCGAAATCAAAGA+AGG | 0.563244 | 4.3:-43773260 | MS.gene03701:CDS |
| ATAAACTGTGGAGTATGCTT+GGG | 0.564301 | 4.3:-43773861 | MS.gene03701:CDS |
| ATCTACATACCATTTGGTCA+AGG | 0.572118 | 4.3:+43772826 | None:intergenic |
| ATCATCAGGCTTAATCTCAT+CGG | 0.572291 | 4.3:+43774152 | None:intergenic |
| GTGATGAATGTGGCATCTGC+AGG | 0.575272 | 4.3:-43773673 | MS.gene03701:intron |
| TTAGTGGATTCATATGACTC+TGG | 0.593486 | 4.3:+43774782 | None:intergenic |
| TACAACACAAGGCAAATACA+AGG | 0.597559 | 4.3:-43771070 | MS.gene03701:CDS |
| TGGATACTGTGCAATGATTG+TGG | 0.602861 | 4.3:-43771151 | MS.gene03701:CDS |
| CCACAATGTGGAATTGCACA+TGG | 0.603156 | 4.3:+43771119 | None:intergenic |
| GCACTGCCACAATGAAGCTA+AGG | 0.605639 | 4.3:-43774550 | MS.gene03701:intron |
| TTAGATGCACACATTACAGA+AGG | 0.606395 | 4.3:-43774620 | MS.gene03701:intron |
| AACACTTATGTGCCACAATG+TGG | 0.611474 | 4.3:+43771107 | None:intergenic |
| GGATTCATATGACTCTGGCA+TGG | 0.620691 | 4.3:+43774787 | None:intergenic |
| GAAATCAGTGTCTTACCTTG+TGG | 0.632283 | 4.3:-43773079 | MS.gene03701:CDS |
| AAGTGTATAGTGTGGCCACA+AGG | 0.633790 | 4.3:+43773064 | None:intergenic |
| ATTCCGTCGAAATCAAAGAA+GGG | 0.638006 | 4.3:-43773259 | MS.gene03701:CDS |
| CAACAAAACTGCATAAACTG+TGG | 0.675223 | 4.3:-43773873 | MS.gene03701:CDS |
| CCATGTGCAATTCCACATTG+TGG | 0.678652 | 4.3:-43771119 | MS.gene03701:CDS |
| CAATACCACTGTGATGAATG+TGG | 0.682908 | 4.3:-43773683 | MS.gene03701:CDS |
| CACACTCAAAGTGTATAGTG+TGG | 0.689250 | 4.3:+43773056 | None:intergenic |
| TTTGTACCTTAGCTTCATTG+TGG | 0.690243 | 4.3:+43774544 | None:intergenic |
| GTTGCAACTCCTACAACACA+AGG | 0.691870 | 4.3:-43771081 | MS.gene03701:CDS |
| CACAATGTGGAATTGCACAT+GGG | 0.692219 | 4.3:+43771120 | None:intergenic |
| TCTGTGATATGTCAAGTGTG+TGG | 0.700300 | 4.3:-43772854 | MS.gene03701:CDS |
| AGATGCCACATTCATCACAG+TGG | 0.779714 | 4.3:+43773678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTCATGTAAAAATT+TGG | - | chr4.3:43771568-43771587 | MS.gene03701:intron | 10.0% |
| !! | TTGATCATATAAAATTAAAA+AGG | - | chr4.3:43773549-43773568 | MS.gene03701:intron | 10.0% |
| !!! | GAATGATTTTTAATTTTTTT+TGG | + | chr4.3:43774282-43774301 | None:intergenic | 10.0% |
| !! | AAAATATGTATATCAAATGA+AGG | - | chr4.3:43772814-43772833 | MS.gene03701:intron | 15.0% |
| !! | CCAATTTCTTAAATTATTAT+CGG | + | chr4.3:43773232-43773251 | None:intergenic | 15.0% |
| !! | TGTGTATATATGTTATATAT+AGG | - | chr4.3:43771870-43771889 | MS.gene03701:intron | 15.0% |
| !!! | AAACATGTATATTTTTCTTT+AGG | - | chr4.3:43772525-43772544 | MS.gene03701:intron | 15.0% |
| !!! | AGTTCTTTTTTTTCATTATT+TGG | - | chr4.3:43773816-43773835 | MS.gene03701:intron | 15.0% |
| !!! | AGTTTTATCATATACTATTA+TGG | - | chr4.3:43772860-43772879 | MS.gene03701:CDS | 15.0% |
| !!! | ATGATCTTTTTAATTTCATA+TGG | - | chr4.3:43773439-43773458 | MS.gene03701:intron | 15.0% |
| !!! | ATTATAATGGTTCATATTTT+AGG | + | chr4.3:43771847-43771866 | None:intergenic | 15.0% |
| !!! | ATTTATATTGTTTTTTCCTT+TGG | - | chr4.3:43771293-43771312 | MS.gene03701:intron | 15.0% |
| !!! | ATTTTTTTTCTTTTTGATAG+TGG | + | chr4.3:43773794-43773813 | None:intergenic | 15.0% |
| !!! | GTTTTATCATATACTATTAT+GGG | - | chr4.3:43772861-43772880 | MS.gene03701:CDS | 15.0% |
| !!! | TATTTTACAAAATTCACAAT+TGG | - | chr4.3:43771393-43771412 | MS.gene03701:intron | 15.0% |
| !!! | TTTTTTACACAAATAATTGA+AGG | - | chr4.3:43774404-43774423 | MS.gene03701:intron | 15.0% |
| !! | AATAGTGAATTAATACCATA+AGG | + | chr4.3:43772900-43772919 | None:intergenic | 20.0% |
| !! | ACAAATAATTGAAAGATTCT+AGG | + | chr4.3:43773749-43773768 | None:intergenic | 20.0% |
| !! | CAAGAAAAAATGTTATTGAT+CGG | + | chr4.3:43771368-43771387 | None:intergenic | 20.0% |
| !! | CCGATAATAATTTAAGAAAT+TGG | - | chr4.3:43773229-43773248 | MS.gene03701:CDS | 20.0% |
| !! | TGAAAAGTTACAAATGAAAT+TGG | + | chr4.3:43771783-43771802 | None:intergenic | 20.0% |
| !! | TGAAATATTGAAATGATGAT+TGG | - | chr4.3:43774489-43774508 | MS.gene03701:intron | 20.0% |
| !! | TGAATCATACAAAAATAAGA+AGG | - | chr4.3:43773116-43773135 | MS.gene03701:intron | 20.0% |
| !! | TGCTTTGATTAAATTACTTA+AGG | + | chr4.3:43773633-43773652 | None:intergenic | 20.0% |
| !! | TGTATTTAGACTTCATATAA+TGG | - | chr4.3:43773043-43773062 | MS.gene03701:CDS | 20.0% |
| !!! | ATGGTTTTATAATAGAGAAA+TGG | - | chr4.3:43771129-43771148 | MS.gene03701:CDS | 20.0% |
| !!! | ATTTTTGTTTCTTTTAGTTC+AGG | - | chr4.3:43772053-43772072 | MS.gene03701:intron | 20.0% |
| !!! | GTGATCTTATTTTGTTTTTA+AGG | - | chr4.3:43774541-43774560 | MS.gene03701:intron | 20.0% |
| !!! | TATATACACATCGATTATAA+TGG | + | chr4.3:43771860-43771879 | None:intergenic | 20.0% |
| !!! | TATATATAGGTATTGAATGT+AGG | - | chr4.3:43771883-43771902 | MS.gene03701:intron | 20.0% |
| !!! | TTCTTATTTTTGTATGATTC+AGG | + | chr4.3:43773117-43773136 | None:intergenic | 20.0% |
| ! | AAAAGATAATAGAAAACGTG+AGG | - | chr4.3:43773913-43773932 | MS.gene03701:intron | 25.0% |
| ! | AAAAGATAATAGAAAACGTG+AGG | + | chr4.3:43773932-43773913 | None:intergenic | 25.0% |
| ! | ACAACGAAATACAAAATTGA+AGG | + | chr4.3:43773331-43773350 | None:intergenic | 25.0% |
| ! | AGCAATTAGCATATGTTAAT+TGG | + | chr4.3:43773518-43773537 | None:intergenic | 25.0% |
| ! | ATACGTTACTATCAAATAGA+AGG | + | chr4.3:43773594-43773613 | None:intergenic | 25.0% |
| ! | ATCATATAATTAGAGACTGA+AGG | + | chr4.3:43773692-43773711 | None:intergenic | 25.0% |
| ! | ATGTCGAATAGAAAATATTC+TGG | + | chr4.3:43772200-43772219 | None:intergenic | 25.0% |
| ! | CTAAATAACAGAAGAATAAG+AGG | + | chr4.3:43773723-43773742 | None:intergenic | 25.0% |
| ! | TATACATGTTTACAACAATC+AGG | + | chr4.3:43772516-43772535 | None:intergenic | 25.0% |
| ! | TCAAAAACTTCATTACAACA+TGG | + | chr4.3:43771239-43771258 | None:intergenic | 25.0% |
| ! | TGAAGATTTATATACTGTGT+TGG | - | chr4.3:43774584-43774603 | MS.gene03701:CDS | 25.0% |
| ! | TGGAATATTGAAATGATGAT+TGG | + | chr4.3:43773308-43773327 | None:intergenic | 25.0% |
| ! | TTAAAAATCATTCCGACTAA+AGG | - | chr4.3:43774289-43774308 | MS.gene03701:intron | 25.0% |
| ! | TTCAAAATCTACATACCATT+TGG | + | chr4.3:43772998-43773017 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCTTCTTTGTAG+TGG | - | chr4.3:43774366-43774385 | MS.gene03701:intron | 25.0% |
| !! | CATTTTTGTGTTGAAACTTT+TGG | - | chr4.3:43773069-43773088 | MS.gene03701:CDS | 25.0% |
| !! | GTTTTATAATAGAGAAATGG+AGG | - | chr4.3:43771132-43771151 | MS.gene03701:CDS | 25.0% |
| !! | TATGCTAATTGTCTTTTACA+AGG | + | chr4.3:43773470-43773489 | None:intergenic | 25.0% |
| !! | TCTGGAATTATCAAATTGAT+TGG | + | chr4.3:43772182-43772201 | None:intergenic | 25.0% |
| !! | TTTCATGAACTATAGTCTTA+TGG | - | chr4.3:43771110-43771129 | MS.gene03701:CDS | 25.0% |
| !! | TTTTTCCATTGCAAAAAATG+CGG | - | chr4.3:43772290-43772309 | MS.gene03701:intron | 25.0% |
| !!! | ATACTAATTGCAGTTGATTT+TGG | + | chr4.3:43772640-43772659 | None:intergenic | 25.0% |
| !!! | ATTCACTATTTTGAACATTC+AGG | - | chr4.3:43772910-43772929 | MS.gene03701:intron | 25.0% |
| !!! | TGAATATTTTTCAATGTTGC+AGG | - | chr4.3:43771917-43771936 | MS.gene03701:intron | 25.0% |
| AAGAGATGGAAAAACATCAT+AGG | - | chr4.3:43772785-43772804 | MS.gene03701:intron | 30.0% | |
| ACGAAATACAAAATTGAAGG+TGG | + | chr4.3:43773328-43773347 | None:intergenic | 30.0% | |
| ATCATATTGTTAGCGACTAA+AGG | - | chr4.3:43774458-43774477 | MS.gene03701:intron | 30.0% | |
| ATGGAAAAACATCATAGGTA+AGG | - | chr4.3:43772790-43772809 | MS.gene03701:intron | 30.0% | |
| CAATACAATGTGCACAATTA+AGG | + | chr4.3:43772079-43772098 | None:intergenic | 30.0% | |
| CATGTAAAAATTTGGAGAAG+TGG | - | chr4.3:43771576-43771595 | MS.gene03701:intron | 30.0% | |
| TAATGACAAGGAAAAGTTAG+TGG | + | chr4.3:43774119-43774138 | None:intergenic | 30.0% | |
| TAATTGTCCTATTTGCTTTG+AGG | - | chr4.3:43772608-43772627 | MS.gene03701:intron | 30.0% | |
| TAGTCTGAATCTTATTGAGA+TGG | - | chr4.3:43772668-43772687 | MS.gene03701:intron | 30.0% | |
| TATCAAACAGATACTGCAAA+AGG | + | chr4.3:43772708-43772727 | None:intergenic | 30.0% | |
| TGATTGTTTACTCCTTTAGT+CGG | + | chr4.3:43774304-43774323 | None:intergenic | 30.0% | |
| TTAAGCGCTTTCATTAAACA+AGG | - | chr4.3:43771516-43771535 | MS.gene03701:intron | 30.0% | |
| TTCATAGATAAAGAAAGCCT+TGG | + | chr4.3:43773163-43773182 | None:intergenic | 30.0% | |
| TTCTGTCTTTACTAATGACA+AGG | + | chr4.3:43774131-43774150 | None:intergenic | 30.0% | |
| ! | ACACACTCTTCTTCAAATTT+TGG | - | chr4.3:43771057-43771076 | MS.gene03701:CDS | 30.0% |
| ! | ATGATGATGTAAGTTCTGTA+GGG | - | chr4.3:43772009-43772028 | MS.gene03701:intron | 30.0% |
| ! | CACACTCTTCTTCAAATTTT+GGG | - | chr4.3:43771058-43771077 | MS.gene03701:CDS | 30.0% |
| ! | TTTTTGTATGATTCAGGCAT+TGG | + | chr4.3:43773111-43773130 | None:intergenic | 30.0% |
| !! | CAATGTTAACCTTTGAAACA+CGG | - | chr4.3:43773184-43773203 | MS.gene03701:intron | 30.0% |
| !! | GTAATGAAGTTTTTGACTGT+AGG | - | chr4.3:43771243-43771262 | MS.gene03701:intron | 30.0% |
| !!! | GTGTTTTGACGAATTACTTA+AGG | - | chr4.3:43773362-43773381 | MS.gene03701:intron | 30.0% |
| !!! | TGGAGAGTGACTTATTTTTT+TGG | - | chr4.3:43773836-43773855 | MS.gene03701:CDS | 30.0% |
| !!! | TTCTTTTTGATAGTGGTTGA+AGG | + | chr4.3:43773787-43773806 | None:intergenic | 30.0% |
| AATAGAAAACGTGAGGATGA+TGG | + | chr4.3:43774210-43774229 | None:intergenic | 35.0% | |
| AGACTCGTTAACTTAGCATT+CGG | - | chr4.3:43771331-43771350 | MS.gene03701:intron | 35.0% | |
| AGATTCTCGCTATAAACCAT+TGG | - | chr4.3:43772349-43772368 | MS.gene03701:intron | 35.0% | |
| AGTAAGACAGTGAACAAACA+AGG | + | chr4.3:43771756-43771775 | None:intergenic | 35.0% | |
| AGTGACACATTTCTAACTAG+TGG | - | chr4.3:43774621-43774640 | MS.gene03701:intron | 35.0% | |
| ATAAACTGTGGAGTATGCTT+GGG | - | chr4.3:43771954-43771973 | MS.gene03701:intron | 35.0% | |
| ATCATCAGGCTTAATCTCAT+CGG | + | chr4.3:43771666-43771685 | None:intergenic | 35.0% | |
| ATCTACATACCATTTGGTCA+AGG | + | chr4.3:43772992-43773011 | None:intergenic | 35.0% | |
| ATCTTGTTCTGTGTCACATA+AGG | + | chr4.3:43771817-43771836 | None:intergenic | 35.0% | |
| ATTCCGTCGAAATCAAAGAA+GGG | - | chr4.3:43772556-43772575 | MS.gene03701:intron | 35.0% | |
| CAACAAAACTGCATAAACTG+TGG | - | chr4.3:43771942-43771961 | MS.gene03701:intron | 35.0% | |
| CACTTCCTTGTAATTGGTAA+AGG | + | chr4.3:43774007-43774026 | None:intergenic | 35.0% | |
| CTAAAGGAGTAAACAATCAG+AGG | - | chr4.3:43774305-43774324 | MS.gene03701:intron | 35.0% | |
| CTTTGAGTGTGTTAAAGAGA+TGG | - | chr4.3:43772771-43772790 | MS.gene03701:intron | 35.0% | |
| CTTTGCCTTTACCAATTACA+AGG | - | chr4.3:43773999-43774018 | MS.gene03701:intron | 35.0% | |
| GAAACCATTGTGGTTTGATA+TGG | + | chr4.3:43774242-43774261 | None:intergenic | 35.0% | |
| GATAATAGAAAACGTGAGGA+TGG | - | chr4.3:43773917-43773936 | MS.gene03701:intron | 35.0% | |
| GCTAGAAAAGTTGTTGAATG+AGG | + | chr4.3:43774181-43774200 | None:intergenic | 35.0% | |
| GTATGTGAAAGAAACCATTG+TGG | - | chr4.3:43773877-43773896 | MS.gene03701:CDS | 35.0% | |
| GTCTTTACCTCAAAGCAAAT+AGG | + | chr4.3:43772618-43772637 | None:intergenic | 35.0% | |
| TACAACACAAGGCAAATACA+AGG | - | chr4.3:43774745-43774764 | MS.gene03701:intron | 35.0% | |
| TACTTGTATGAAAGCAGGTA+TGG | - | chr4.3:43774644-43774663 | MS.gene03701:intron | 35.0% | |
| TATTCCGTCGAAATCAAAGA+AGG | - | chr4.3:43772555-43772574 | MS.gene03701:intron | 35.0% | |
| TCATGATCACGATCATGTAT+TGG | + | chr4.3:43774084-43774103 | None:intergenic | 35.0% | |
| TGTTTACAACAATCAGGTGA+TGG | + | chr4.3:43772510-43772529 | None:intergenic | 35.0% | |
| TTAGATGCACACATTACAGA+AGG | - | chr4.3:43771195-43771214 | MS.gene03701:intron | 35.0% | |
| TTCACCATATCAAACCACAA+TGG | - | chr4.3:43774235-43774254 | MS.gene03701:intron | 35.0% | |
| TTCTGCTAAAAGAAGACCAA+AGG | + | chr4.3:43771312-43771331 | None:intergenic | 35.0% | |
| TTCTTCTTTGTAGTGGTTGA+AGG | - | chr4.3:43774373-43774392 | MS.gene03701:intron | 35.0% | |
| TTGTATTTGCCTTGTGTTGT+AGG | + | chr4.3:43774746-43774765 | None:intergenic | 35.0% | |
| TTTGTACCTTAGCTTCATTG+TGG | + | chr4.3:43771274-43771293 | None:intergenic | 35.0% | |
| ! | CAGATAGATTTTGAGCAAAC+AGG | + | chr4.3:43772945-43772964 | None:intergenic | 35.0% |
| ! | GATGATGATGTAAGTTCTGT+AGG | - | chr4.3:43772008-43772027 | MS.gene03701:intron | 35.0% |
| ! | TACCAATTACAAGGAAGTGT+TGG | - | chr4.3:43774008-43774027 | MS.gene03701:CDS | 35.0% |
| ! | TGAAGAAGAGTGTGTATTAG+TGG | + | chr4.3:43771052-43771071 | None:intergenic | 35.0% |
| !! | AATTGCTTTTACAGAACTGG+TGG | - | chr4.3:43772257-43772276 | MS.gene03701:intron | 35.0% |
| !! | CGTAATTGCTTTTACAGAAC+TGG | - | chr4.3:43772254-43772273 | MS.gene03701:intron | 35.0% |
| !! | TTAGTGGATTCATATGACTC+TGG | + | chr4.3:43771036-43771055 | None:intergenic | 35.0% |
| !! | TTCTAGTTCATGCTCATCTA+GGG | - | chr4.3:43774774-43774793 | MS.gene03701:CDS | 35.0% |
| !!! | ACCTTTTTAACTTCATGACG+CGG | + | chr4.3:43771701-43771720 | None:intergenic | 35.0% |
| !!! | TTTTTGATAGTGGTTGAAGG+AGG | + | chr4.3:43773784-43773803 | None:intergenic | 35.0% |
| AACACTTATGTGCCACAATG+TGG | + | chr4.3:43774711-43774730 | None:intergenic | 40.0% | |
| AATAGAAAACGTGAGGATGG+TGG | - | chr4.3:43773920-43773939 | MS.gene03701:intron | 40.0% | |
| ACACGCTGCTATCAAATAGA+AGG | - | chr4.3:43773401-43773420 | MS.gene03701:intron | 40.0% | |
| AGTGGTACTTGTATGAAAGC+AGG | - | chr4.3:43774639-43774658 | MS.gene03701:intron | 40.0% | |
| ATGGTTTCTTTCACACACAG+AGG | - | chr4.3:43774254-43774273 | MS.gene03701:intron | 40.0% | |
| CAAGGAAAAGTTAGTGGTGA+TGG | + | chr4.3:43774113-43774132 | None:intergenic | 40.0% | |
| CAATACCACTGTGATGAATG+TGG | - | chr4.3:43772132-43772151 | MS.gene03701:intron | 40.0% | |
| CACAATGTGGAATTGCACAT+GGG | + | chr4.3:43774698-43774717 | None:intergenic | 40.0% | |
| CACACTCAAAGTGTATAGTG+TGG | + | chr4.3:43772762-43772781 | None:intergenic | 40.0% | |
| CACCAACACTTCCTTGTAAT+TGG | + | chr4.3:43774013-43774032 | None:intergenic | 40.0% | |
| CATAAACTGTGGAGTATGCT+TGG | - | chr4.3:43771953-43771972 | MS.gene03701:intron | 40.0% | |
| CTAGATGAGCATGAACTAGA+AGG | + | chr4.3:43774775-43774794 | None:intergenic | 40.0% | |
| GAAACCATTGTGGTTTGATG+TGG | - | chr4.3:43773887-43773906 | MS.gene03701:intron | 40.0% | |
| GAAATCAGTGTCTTACCTTG+TGG | - | chr4.3:43772736-43772755 | MS.gene03701:intron | 40.0% | |
| GGAATATCATGACGATCATC+AGG | + | chr4.3:43771680-43771699 | None:intergenic | 40.0% | |
| GGTTTCTTTCACATACACAG+AGG | + | chr4.3:43773873-43773892 | None:intergenic | 40.0% | |
| GTGTGTGAAAGAAACCATTG+TGG | + | chr4.3:43774252-43774271 | None:intergenic | 40.0% | |
| TCCGCGTCATGAAGTTAAAA+AGG | - | chr4.3:43771697-43771716 | MS.gene03701:intron | 40.0% | |
| TCTGTGATATGTCAAGTGTG+TGG | - | chr4.3:43772961-43772980 | MS.gene03701:intron | 40.0% | |
| TGATCACGATCATGTATTGG+TGG | + | chr4.3:43774081-43774100 | None:intergenic | 40.0% | |
| TGGATACTGTGCAATGATTG+TGG | - | chr4.3:43774664-43774683 | MS.gene03701:intron | 40.0% | |
| TTCACCACATCAAACCACAA+TGG | + | chr4.3:43773894-43773913 | None:intergenic | 40.0% | |
| ! | ATGCCCTTCTTTGATTTCGA+CGG | + | chr4.3:43772562-43772581 | None:intergenic | 40.0% |
| !! | ATTGTTGATGATGTTGCCTG+AGG | + | chr4.3:43773976-43773995 | None:intergenic | 40.0% |
| !! | CAATTACAAGGAAGTGTTGG+TGG | - | chr4.3:43774011-43774030 | MS.gene03701:CDS | 40.0% |
| !! | CTTCTAGTTCATGCTCATCT+AGG | - | chr4.3:43774773-43774792 | MS.gene03701:CDS | 40.0% |
| !!! | ACTCACCGCATTTTTTGCAA+TGG | + | chr4.3:43772298-43772317 | None:intergenic | 40.0% |
| AAGTGTATAGTGTGGCCACA+AGG | + | chr4.3:43772754-43772773 | None:intergenic | 45.0% | |
| AGATGCCACATTCATCACAG+TGG | + | chr4.3:43772140-43772159 | None:intergenic | 45.0% | |
| AGATGTTTGTGCAGTGCCAA+TGG | + | chr4.3:43772368-43772387 | None:intergenic | 45.0% | |
| CCACAATGTGGAATTGCACA+TGG | + | chr4.3:43774699-43774718 | None:intergenic | 45.0% | |
| CCATGTGCAATTCCACATTG+TGG | - | chr4.3:43774696-43774715 | MS.gene03701:intron | 45.0% | |
| GATAAAGAAAGCCTTGGAGC+TGG | + | chr4.3:43773157-43773176 | None:intergenic | 45.0% | |
| GGATTCATATGACTCTGGCA+TGG | + | chr4.3:43771031-43771050 | None:intergenic | 45.0% | |
| GGCTAGTGTTGTGTTCCTTA+TGG | - | chr4.3:43772882-43772901 | MS.gene03701:CDS | 45.0% | |
| GTATCGTGTCCGTGTTTCAA+AGG | + | chr4.3:43773196-43773215 | None:intergenic | 45.0% | |
| GTGGAAGAACCTTGACCAAA+TGG | - | chr4.3:43772980-43772999 | MS.gene03701:intron | 45.0% | |
| GTTGCAACTCCTACAACACA+AGG | - | chr4.3:43774734-43774753 | MS.gene03701:intron | 45.0% | |
| ! | GTTGTTGAATGAAGTGCCTC+AGG | - | chr4.3:43773957-43773976 | MS.gene03701:intron | 45.0% |
| ! | TGTGTGATGATGTTGCGTGA+GGG | - | chr4.3:43774154-43774173 | MS.gene03701:CDS | 45.0% |
| ! | TTGTGTGATGATGTTGCGTG+AGG | - | chr4.3:43774153-43774172 | MS.gene03701:CDS | 45.0% |
| !! | TGATTCAGGCATTGGAGTTG+AGG | + | chr4.3:43773103-43773122 | None:intergenic | 45.0% |
| GCACTGCCACAATGAAGCTA+AGG | - | chr4.3:43771265-43771284 | MS.gene03701:intron | 50.0% | |
| GTGATGAATGTGGCATCTGC+AGG | - | chr4.3:43772142-43772161 | MS.gene03701:intron | 50.0% | |
| TTGCAACAACTCCAGCTCCA+AGG | - | chr4.3:43773143-43773162 | MS.gene03701:intron | 50.0% | |
| !! | CAAGGAAGTGTTGGTGGTGA+TGG | - | chr4.3:43774017-43774036 | MS.gene03701:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43771021 | 43774816 | 43771021 | ID=MS.gene03701 |
| chr4.3 | mRNA | 43771021 | 43774816 | 43771021 | ID=MS.gene03701.t1;Parent=MS.gene03701 |
| chr4.3 | exon | 43774758 | 43774816 | 43774758 | ID=MS.gene03701.t1.exon1;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43774758 | 43774816 | 43774758 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43774551 | 43774638 | 43774551 | ID=MS.gene03701.t1.exon2;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43774551 | 43774638 | 43774551 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43774119 | 43774178 | 43774119 | ID=MS.gene03701.t1.exon3;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43774119 | 43774178 | 43774119 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43774001 | 43774033 | 43774001 | ID=MS.gene03701.t1.exon4;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43774001 | 43774033 | 43774001 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43773821 | 43773898 | 43773821 | ID=MS.gene03701.t1.exon5;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43773821 | 43773898 | 43773821 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43773674 | 43773717 | 43773674 | ID=MS.gene03701.t1.exon6;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43773674 | 43773717 | 43773674 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43773526 | 43773566 | 43773526 | ID=MS.gene03701.t1.exon7;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43773526 | 43773566 | 43773526 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43773208 | 43773290 | 43773208 | ID=MS.gene03701.t1.exon8;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43773208 | 43773290 | 43773208 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43773031 | 43773122 | 43773031 | ID=MS.gene03701.t1.exon9;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43773031 | 43773122 | 43773031 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43772836 | 43772905 | 43772836 | ID=MS.gene03701.t1.exon10;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43772836 | 43772905 | 43772836 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43772700 | 43772741 | 43772700 | ID=MS.gene03701.t1.exon11;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43772700 | 43772741 | 43772700 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| chr4.3 | exon | 43771021 | 43771176 | 43771021 | ID=MS.gene03701.t1.exon12;Parent=MS.gene03701.t1 |
| chr4.3 | CDS | 43771021 | 43771176 | 43771021 | ID=cds.MS.gene03701.t1;Parent=MS.gene03701.t1 |
| Gene Sequence |
| Protein sequence |
