AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002763

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002763.t1 MTR_2g020040 99.625 267 1 0 1 267 1 267 0.0 551
MS.gene002763.t1 MTR_4g057310 58.704 247 101 1 15 260 15 261 1.79e-110 320
MS.gene002763.t1 MTR_3g108240 58.065 248 103 1 12 258 58 305 3.23e-107 313
MS.gene002763.t1 MTR_1g047740 57.600 250 105 1 10 258 48 297 1.43e-106 311
MS.gene002763.t1 MTR_7g102990 54.800 250 112 1 10 258 16 265 7.69e-106 309
MS.gene002763.t1 MTR_3g108240 56.972 251 106 2 10 258 53 303 1.31e-104 306
MS.gene002763.t1 MTR_4g057310 59.000 200 81 1 15 213 18 217 9.27e-88 260
MS.gene002763.t1 MTR_1g010150 57.711 201 85 0 58 258 1 201 9.90e-87 257
MS.gene002763.t1 MTR_7g102990 54.545 176 79 1 10 184 16 191 1.64e-70 216
MS.gene002763.t1 MTR_8g104410 38.672 256 140 6 10 260 991 1234 7.26e-55 190
MS.gene002763.t1 MTR_8g104410 38.672 256 140 6 10 260 755 998 1.07e-54 190
MS.gene002763.t1 MTR_4g107440 40.000 250 133 6 16 260 1034 1271 6.20e-54 188
MS.gene002763.t1 MTR_6g083900 39.453 256 139 6 10 260 980 1224 3.59e-53 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002763.t1 AT5G18650 81.273 267 50 0 1 267 1 267 4.24e-169 468
MS.gene002763.t1 AT3G62970 60.985 264 101 2 4 266 20 282 3.46e-124 355
MS.gene002763.t1 AT5G22920 59.363 251 101 1 9 258 18 268 3.97e-112 325
MS.gene002763.t1 AT3G62970 61.333 225 86 1 4 227 20 244 1.30e-107 312
MS.gene002763.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene002763.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene002763.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene002763.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene002763.t1 AT5G25560 52.878 278 110 3 2 258 37 314 1.43e-102 301
MS.gene002763.t1 AT3G62970 60.648 216 84 1 4 218 20 235 1.55e-102 298
MS.gene002763.t1 AT5G25560 53.668 259 119 1 1 258 41 299 2.23e-100 295
MS.gene002763.t1 AT5G22920 58.182 220 91 1 9 227 18 237 1.43e-94 278
MS.gene002763.t1 AT3G18290 39.313 262 142 6 10 266 998 1247 1.69e-55 192
MS.gene002763.t1 AT1G18910 41.200 250 131 6 13 258 1015 1252 2.06e-55 192
MS.gene002763.t1 AT1G74770 38.554 249 137 6 16 260 1023 1259 4.90e-54 188
MS.gene002763.t1 AT1G74770 37.129 202 111 6 16 213 1023 1212 2.30e-39 146

Find 54 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTGAACGTCTTGATTT+TGG 0.056272 2.1:-67268768 MS.gene002763:CDS
GAAGTTTCCTTCCACATTAT+TGG 0.198378 2.1:-67265886 MS.gene002763:CDS
TTGATAGGTGTAAGCATTAT+AGG 0.242827 2.1:-67268637 MS.gene002763:intron
AAGTTTCCTTCCACATTATT+GGG 0.296468 2.1:-67265885 MS.gene002763:CDS
TATCTTTCAATGAGTCAAAA+AGG 0.335621 2.1:+67266737 None:intergenic
TGGAGTTCTCCACACATAAA+TGG 0.341398 2.1:+67266904 None:intergenic
GCATGGACCTCGTAACAAAT+TGG 0.347063 2.1:+67266867 None:intergenic
CTGTCATGCCTGATGATTAT+CGG 0.370354 2.1:-67266339 MS.gene002763:CDS
TTCGATTATTGCGGAAGAAC+AGG 0.378233 2.1:+67265814 None:intergenic
AATCACCGACTTGGAACATA+TGG 0.383543 2.1:+67266547 None:intergenic
CCCAAAATCAAGACGTTCAA+TGG 0.407306 2.1:+67268767 None:intergenic
ACAAGTTCGTGGTGATCAAA+AGG 0.413852 2.1:+67268427 None:intergenic
TTTCTATTCCGATAATCATC+AGG 0.448183 2.1:+67266331 None:intergenic
AGTTTCACTGTGACGATTGT+GGG 0.471619 2.1:-67267928 MS.gene002763:CDS
CAGTTTCACTGTGACGATTG+TGG 0.485260 2.1:-67267929 MS.gene002763:CDS
CGCATTTATGCCCAATAATG+TGG 0.502852 2.1:+67265875 None:intergenic
CACTAACTGTGGTGTCAGAA+TGG 0.512129 2.1:-67268146 MS.gene002763:CDS
CAAGTTCGTGGTGATCAAAA+GGG 0.517589 2.1:+67268428 None:intergenic
TAATTTGTAAACAGAGTTGG+TGG 0.530363 2.1:-67267826 MS.gene002763:intron
GTGACGATTGTGGGATCTGC+AGG 0.532433 2.1:-67267919 MS.gene002763:intron
ACATACCACACTTCTTGCAA+TGG 0.545335 2.1:+67267788 None:intergenic
ATCAAGACGTTCAATGGCAG+AGG 0.546666 2.1:+67268773 None:intergenic
AGACATGTCAATCACCGACT+TGG 0.549483 2.1:+67266538 None:intergenic
TCGTGCTCCTTGTTGCAATG+AGG 0.561125 2.1:-67268600 MS.gene002763:CDS
CATCATTACGAACAAGTTCG+TGG 0.564061 2.1:+67268416 None:intergenic
GTCGGTGATTGACATGTCTA+CGG 0.564442 2.1:-67266534 MS.gene002763:CDS
GATACAACCGTTATGAAATG+TGG 0.566189 2.1:-67266718 MS.gene002763:CDS
TGTGTGGCCACATTTCATAA+CGG 0.569384 2.1:+67266711 None:intergenic
CACATTATTGGGCATAAATG+CGG 0.569809 2.1:-67265874 MS.gene002763:CDS
ACTAACTGTGGTGTCAGAAT+GGG 0.571435 2.1:-67268145 MS.gene002763:CDS
AATTGGACAATGATGCCTCA+TGG 0.578817 2.1:+67266884 None:intergenic
TGTCACGCTTTATCATCTCA+TGG 0.581180 2.1:+67266671 None:intergenic
CTGCAAGAATTCGATTATTG+CGG 0.583669 2.1:+67265805 None:intergenic
TGATGATTATCGGAATAGAA+AGG 0.589941 2.1:-67266329 MS.gene002763:intron
TATTTCCATTGCAAGAAGTG+TGG 0.601945 2.1:-67267793 MS.gene002763:intron
TTTATGCCCAATAATGTGGA+AGG 0.608898 2.1:+67265879 None:intergenic
GCTCAAGTTTGCACTAACTG+TGG 0.612321 2.1:-67268157 MS.gene002763:CDS
ATCACCGACTTGGAACATAT+GGG 0.612737 2.1:+67266548 None:intergenic
AATAATGTGGAAGGAAACTT+CGG 0.612783 2.1:+67265888 None:intergenic
AGCATTATAGGAGAAGATGC+AGG 0.620867 2.1:-67268625 MS.gene002763:CDS
ATGGAAGAGAATTGATGAAG+AGG 0.624716 2.1:-67266510 MS.gene002763:intron
TGATTGACATGTCTACGGCA+TGG 0.625316 2.1:-67266529 MS.gene002763:CDS
GATTATTGCGGAAGAACAGG+AGG 0.633089 2.1:+67265817 None:intergenic
TCATTGTCCAATTTGTTACG+AGG 0.635894 2.1:-67266874 MS.gene002763:intron
GAGTAAACCTCATTGCAACA+AGG 0.647135 2.1:+67268593 None:intergenic
AATTTGTAAACAGAGTTGGT+GGG 0.647864 2.1:-67267825 MS.gene002763:intron
TCATTGTCATAACGAGGCAA+CGG 0.653857 2.1:-67268564 MS.gene002763:intron
TTGTCCCATATGTTCCAAGT+CGG 0.661678 2.1:-67266552 MS.gene002763:CDS
TTGCCTCGTTATGACAATGA+CGG 0.668381 2.1:+67268567 None:intergenic
CATCATCAAAGAATTTGCAG+AGG 0.687660 2.1:+67268107 None:intergenic
AACATTCACAATGCATTGTG+TGG 0.691022 2.1:+67266695 None:intergenic
GCGTGATAACCATTTATGTG+TGG 0.698690 2.1:-67266913 MS.gene002763:CDS
TTGCCGTCATTGTCATAACG+AGG 0.718027 2.1:-67268570 MS.gene002763:CDS
TATGTGTGGAGAACTCCATG+AGG 0.777816 2.1:-67266899 MS.gene002763:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAATGAAAACTTTA+TGG + chr2.1:67265888-67265907 None:intergenic 15.0%
!!! TTATTTGATTTTTGATTGAT+AGG - chr2.1:67265947-67265966 MS.gene002763:intron 15.0%
!!! TTTAAGCTTTTTAATTTTGT+GGG - chr2.1:67265921-67265940 MS.gene002763:CDS 15.0%
!!! TTTTAAGCTTTTTAATTTTG+TGG - chr2.1:67265920-67265939 MS.gene002763:CDS 15.0%
!! AACTTTATGGAAAATGAAAA+AGG + chr2.1:67265875-67265894 None:intergenic 20.0%
!! AATTATGAATAGATACATAC+TGG + chr2.1:67266347-67266366 None:intergenic 20.0%
!! AATTGAAAAACACAAATCAA+AGG + chr2.1:67266232-67266251 None:intergenic 20.0%
!! TAAATGAAAACATGGTATAA+GGG + chr2.1:67267771-67267790 None:intergenic 20.0%
!! TGTATTAAACTAGTATTACT+AGG + chr2.1:67268308-67268327 None:intergenic 20.0%
!! TTAAATGAAAACATGGTATA+AGG + chr2.1:67267772-67267791 None:intergenic 20.0%
!!! AGATTTTTAACATGAAAACA+AGG + chr2.1:67266084-67266103 None:intergenic 20.0%
!!! ATCTAATAAATTTATCGACT+TGG - chr2.1:67267587-67267606 MS.gene002763:intron 20.0%
!!! ATTTCTGTTTGATAATGTAT+TGG - chr2.1:67267288-67267307 MS.gene002763:intron 20.0%
!!! CAAAATCATTTTTCTATAGA+TGG - chr2.1:67267132-67267151 MS.gene002763:intron 20.0%
!!! CATCTATAGAAAAATGATTT+TGG + chr2.1:67267134-67267153 None:intergenic 20.0%
!!! TAATCTCATTGTTTTTGATT+TGG - chr2.1:67266607-67266626 MS.gene002763:intron 20.0%
!!! TTTCTGTTTGATAATGTATT+GGG - chr2.1:67267289-67267308 MS.gene002763:intron 20.0%
! ACTAAAGATGATAACATGTT+TGG + chr2.1:67266984-67267003 None:intergenic 25.0%
! ATGTTGAACAAGTAAGATTA+AGG - chr2.1:67266203-67266222 MS.gene002763:intron 25.0%
! ATGTTTGATGTCAAATATGA+AGG + chr2.1:67268373-67268392 None:intergenic 25.0%
! ATTTGAGTAAATAGTTTCTG+AGG - chr2.1:67266712-67266731 MS.gene002763:CDS 25.0%
! CAATTCTTTCATACTATCAA+AGG + chr2.1:67266961-67266980 None:intergenic 25.0%
! GTATGTATTTATTCATCACA+AGG - chr2.1:67266828-67266847 MS.gene002763:intron 25.0%
! TAGTTGCATCTCATAAATTT+GGG + chr2.1:67266741-67266760 None:intergenic 25.0%
! TATCTTTCAATGAGTCAAAA+AGG + chr2.1:67267865-67267884 None:intergenic 25.0%
! TATGTAATATTAACTCGACT+AGG - chr2.1:67268006-67268025 MS.gene002763:intron 25.0%
! TGTTGAACAAGTAAGATTAA+GGG - chr2.1:67266204-67266223 MS.gene002763:intron 25.0%
! TTAGTTGCATCTCATAAATT+TGG + chr2.1:67266742-67266761 None:intergenic 25.0%
! TTCTCTGAATTCATCTATTA+TGG - chr2.1:67267532-67267551 MS.gene002763:intron 25.0%
!! ACCATGTTTTCATTTAAACA+AGG - chr2.1:67267775-67267794 MS.gene002763:intron 25.0%
!! ATGTAATTTGTAAACAGAGT+TGG - chr2.1:67266770-67266789 MS.gene002763:intron 25.0%
!! CTCTTTAATGTTTCTTTTGA+AGG - chr2.1:67266417-67266436 MS.gene002763:intron 25.0%
!! TCCTTGTTTAAATGAAAACA+TGG + chr2.1:67267779-67267798 None:intergenic 25.0%
!! TGAAATCAGAATCCATTTTA+GGG - chr2.1:67267350-67267369 MS.gene002763:intron 25.0%
!! TTATGAGATGCAACTAATTT+TGG - chr2.1:67266745-67266764 MS.gene002763:intron 25.0%
!!! ATCATTTTTCTATAGATGGA+TGG - chr2.1:67267136-67267155 MS.gene002763:intron 25.0%
!!! TCTGTTGTGTTTTTGTTTTT+TGG - chr2.1:67266376-67266395 MS.gene002763:intron 25.0%
!!! TTATTGCTTTTTTCTGATCT+GGG - chr2.1:67266108-67266127 MS.gene002763:intron 25.0%
!!! TTGTGTTTTTGTTTTTTGGA+TGG - chr2.1:67266380-67266399 MS.gene002763:intron 25.0%
AAAACATGGTATAAGGGAAA+GGG + chr2.1:67267765-67267784 None:intergenic 30.0%
AAGTTTCCTTCCACATTATT+GGG - chr2.1:67268714-67268733 MS.gene002763:intron 30.0%
AATAATGTGGAAGGAAACTT+CGG + chr2.1:67268714-67268733 None:intergenic 30.0%
ACAAAGTGAAGTCAAATAGT+GGG + chr2.1:67268491-67268510 None:intergenic 30.0%
ATAACAAGAACAAGGGAAAA+AGG + chr2.1:67267326-67267345 None:intergenic 30.0%
GAATAAGGTTAGAAGTTCTA+TGG + chr2.1:67267213-67267232 None:intergenic 30.0%
GATATATGCATGTGAAAGAA+AGG + chr2.1:67268608-67268627 None:intergenic 30.0%
TACAAAGTGAAGTCAAATAG+TGG + chr2.1:67268492-67268511 None:intergenic 30.0%
TCATCGAAAACGAGAAAAAA+TGG + chr2.1:67266857-67266876 None:intergenic 30.0%
TCTTTCACATGCATATATCA+TGG - chr2.1:67268609-67268628 MS.gene002763:CDS 30.0%
TGATGATTATCGGAATAGAA+AGG - chr2.1:67268270-67268289 MS.gene002763:intron 30.0%
TTGACAATACTAAGCATGAA+TGG - chr2.1:67268573-67268592 MS.gene002763:CDS 30.0%
TTGACATCAAACATGCTTAT+GGG - chr2.1:67268379-67268398 MS.gene002763:intron 30.0%
TTGATAGGTGTAAGCATTAT+AGG - chr2.1:67265962-67265981 MS.gene002763:intron 30.0%
TTTCTATTCCGATAATCATC+AGG + chr2.1:67268271-67268290 None:intergenic 30.0%
TTTGACATCAAACATGCTTA+TGG - chr2.1:67268378-67268397 MS.gene002763:intron 30.0%
! AAAATGGATTCTGATTTCAG+AGG + chr2.1:67267349-67267368 None:intergenic 30.0%
! AATTTGTAAACAGAGTTGGT+GGG - chr2.1:67266774-67266793 MS.gene002763:intron 30.0%
! CTGAAATCAGAATCCATTTT+AGG - chr2.1:67267349-67267368 MS.gene002763:intron 30.0%
! TAATTTGTAAACAGAGTTGG+TGG - chr2.1:67266773-67266792 MS.gene002763:intron 30.0%
! TTTTATGCTCCACAATTATC+TGG - chr2.1:67268156-67268175 MS.gene002763:CDS 30.0%
!! AAATTTATCGACTTGGTTAG+TGG - chr2.1:67267594-67267613 MS.gene002763:intron 30.0%
!!! ATGGATTGTTTTGTTTCCAT+TGG - chr2.1:67267551-67267570 MS.gene002763:intron 30.0%
!!! CTTATTGCTTTTTTCTGATC+TGG - chr2.1:67266107-67266126 MS.gene002763:intron 30.0%
!!! GTTTTTTGAGAACCACTTTT+AGG + chr2.1:67267377-67267396 None:intergenic 30.0%
AACATTCACAATGCATTGTG+TGG + chr2.1:67267907-67267926 None:intergenic 35.0%
ATAAATTGCTCCATTTCGAC+AGG - chr2.1:67267642-67267661 MS.gene002763:intron 35.0%
ATGGAAGAGAATTGATGAAG+AGG - chr2.1:67268089-67268108 MS.gene002763:intron 35.0%
CACATTATTGGGCATAAATG+CGG - chr2.1:67268725-67268744 MS.gene002763:intron 35.0%
CAGCTGATAGAATCATCAAT+AGG + chr2.1:67267034-67267053 None:intergenic 35.0%
CATCATCAAAGAATTTGCAG+AGG + chr2.1:67266495-67266514 None:intergenic 35.0%
CATGTGAAAGAAAGGACAAA+AGG + chr2.1:67268600-67268619 None:intergenic 35.0%
GAAAACATGGTATAAGGGAA+AGG + chr2.1:67267766-67267785 None:intergenic 35.0%
GAAATCACTTGAGAACAAGT+TGG + chr2.1:67267235-67267254 None:intergenic 35.0%
GAAGTTTCCTTCCACATTAT+TGG - chr2.1:67268713-67268732 MS.gene002763:intron 35.0%
GATACAACCGTTATGAAATG+TGG - chr2.1:67267881-67267900 MS.gene002763:intron 35.0%
GTAACTACCATAGATCACAA+GGG + chr2.1:67267446-67267465 None:intergenic 35.0%
GTCAAATATGAAGGTTCTTG+CGG + chr2.1:67268364-67268383 None:intergenic 35.0%
TAAATTGCTCCATTTCGACA+GGG - chr2.1:67267643-67267662 MS.gene002763:intron 35.0%
TATTAACTCGACTAGGTGTA+TGG - chr2.1:67268013-67268032 MS.gene002763:intron 35.0%
TATTTCCATTGCAAGAAGTG+TGG - chr2.1:67266806-67266825 MS.gene002763:intron 35.0%
TCAGAGGATAACAAGAACAA+GGG + chr2.1:67267333-67267352 None:intergenic 35.0%
TGTTCTTGACCAGATAATTG+TGG + chr2.1:67268168-67268187 None:intergenic 35.0%
TTCAGAGGATAACAAGAACA+AGG + chr2.1:67267334-67267353 None:intergenic 35.0%
TTTATGCCCAATAATGTGGA+AGG + chr2.1:67268723-67268742 None:intergenic 35.0%
! CCATTGAACGTCTTGATTTT+GGG - chr2.1:67265832-67265851 MS.gene002763:CDS 35.0%
! CTTGAGAACAAGTTGGAATA+AGG + chr2.1:67267228-67267247 None:intergenic 35.0%
!! ACACACTGCTTTAGAAAACA+AGG + chr2.1:67267169-67267188 None:intergenic 35.0%
!! ACATGAGATGTTGATGATTG+TGG - chr2.1:67266265-67266284 MS.gene002763:intron 35.0%
!! ATTTTGGGAAGATGGGATAT+GGG - chr2.1:67265847-67265866 MS.gene002763:CDS 35.0%
!! TCATTGTCCAATTTGTTACG+AGG - chr2.1:67267725-67267744 MS.gene002763:intron 35.0%
!! TGTTTGCATCTTGTTGTTTC+AGG - chr2.1:67266292-67266311 MS.gene002763:intron 35.0%
!!! CCATGGATCAAGGTTTTTTT+GGG + chr2.1:67267468-67267487 None:intergenic 35.0%
!!! GCGTTTTGCGTTTTTTTGAA+AGG - chr2.1:67267487-67267506 MS.gene002763:intron 35.0%
!!! GTTTTGTTTCCATTGGACTT+TGG - chr2.1:67267558-67267577 MS.gene002763:intron 35.0%
AAGGAATTTCTACATGTCCC+TGG - chr2.1:67267794-67267813 MS.gene002763:CDS 40.0%
AAGTATCCAAACCTGCAACA+CGG + chr2.1:67268669-67268688 None:intergenic 40.0%
AATTGGACAATGATGCCTCA+TGG + chr2.1:67267718-67267737 None:intergenic 40.0%
ACAAGAACAAGGGAAAAAGG+AGG + chr2.1:67267323-67267342 None:intergenic 40.0%
ACAAGTTCGTGGTGATCAAA+AGG + chr2.1:67266175-67266194 None:intergenic 40.0%
ACATACCACACTTCTTGCAA+TGG + chr2.1:67266814-67266833 None:intergenic 40.0%
AGAATTGATGAAGAGGTAGC+TGG - chr2.1:67268096-67268115 MS.gene002763:intron 40.0%
AGCATTATAGGAGAAGATGC+AGG - chr2.1:67265974-67265993 MS.gene002763:intron 40.0%
AGTTTCACTGTGACGATTGT+GGG - chr2.1:67266671-67266690 MS.gene002763:CDS 40.0%
CAAAAAAACGCAAAACGCCA+TGG + chr2.1:67267485-67267504 None:intergenic 40.0%
CAACGCACAATTGACAACAT+TGG + chr2.1:67268410-67268429 None:intergenic 40.0%
CAAGTTCGTGGTGATCAAAA+GGG + chr2.1:67266174-67266193 None:intergenic 40.0%
CATCATTACGAACAAGTTCG+TGG + chr2.1:67266186-67266205 None:intergenic 40.0%
CCCAAAAAAACCTTGATCCA+TGG - chr2.1:67267465-67267484 MS.gene002763:intron 40.0%
CCCAAAATCAAGACGTTCAA+TGG + chr2.1:67265835-67265854 None:intergenic 40.0%
CGCATTTATGCCCAATAATG+TGG + chr2.1:67268727-67268746 None:intergenic 40.0%
CTGTCATGCCTGATGATTAT+CGG - chr2.1:67268260-67268279 MS.gene002763:intron 40.0%
GAGAAAACTATTGCCAACTG+AGG + chr2.1:67267517-67267536 None:intergenic 40.0%
GAGTAAACCTCATTGCAACA+AGG + chr2.1:67266009-67266028 None:intergenic 40.0%
GATATGACTCCAAAGTCCAA+TGG + chr2.1:67267570-67267589 None:intergenic 40.0%
GCGTGATAACCATTTATGTG+TGG - chr2.1:67267686-67267705 MS.gene002763:intron 40.0%
GGTAACTACCATAGATCACA+AGG + chr2.1:67267447-67267466 None:intergenic 40.0%
GTTCAAACCCTTGTGATCTA+TGG - chr2.1:67267436-67267455 MS.gene002763:intron 40.0%
TCATTGTCATAACGAGGCAA+CGG - chr2.1:67266035-67266054 MS.gene002763:intron 40.0%
TGGAGTTCTCCACACATAAA+TGG + chr2.1:67267698-67267717 None:intergenic 40.0%
TGTCACGCTTTATCATCTCA+TGG + chr2.1:67267931-67267950 None:intergenic 40.0%
TGTGTGGCCACATTTCATAA+CGG + chr2.1:67267891-67267910 None:intergenic 40.0%
TTGCCTCGTTATGACAATGA+CGG + chr2.1:67266035-67266054 None:intergenic 40.0%
TTGTCCCATATGTTCCAAGT+CGG - chr2.1:67268047-67268066 MS.gene002763:intron 40.0%
TTGTTCGTTCGATATGCAGA+CGG - chr2.1:67266639-67266658 MS.gene002763:intron 40.0%
! ACTAACTGTGGTGTCAGAAT+GGG - chr2.1:67266454-67266473 MS.gene002763:intron 40.0%
! GCCATTGAACGTCTTGATTT+TGG - chr2.1:67265831-67265850 MS.gene002763:CDS 40.0%
!! AATCACCGACTTGGAACATA+TGG + chr2.1:67268055-67268074 None:intergenic 40.0%
!! ACGTCTTGATTTTGGGAAGA+TGG - chr2.1:67265839-67265858 MS.gene002763:CDS 40.0%
!! ATCACCGACTTGGAACATAT+GGG + chr2.1:67268054-67268073 None:intergenic 40.0%
!! CCACTTTTAGGTCCCTAAAA+TGG + chr2.1:67267365-67267384 None:intergenic 40.0%
!! CCATTTTAGGGACCTAAAAG+TGG - chr2.1:67267362-67267381 MS.gene002763:intron 40.0%
!! CGTCTTGATTTTGGGAAGAT+GGG - chr2.1:67265840-67265859 MS.gene002763:CDS 40.0%
!! GATTTTGGGAAGATGGGATA+TGG - chr2.1:67265846-67265865 MS.gene002763:CDS 40.0%
!! TTTGAAAGGTTAGCCTCAGT+TGG - chr2.1:67267501-67267520 MS.gene002763:intron 40.0%
!!! GCCATGGATCAAGGTTTTTT+TGG + chr2.1:67267469-67267488 None:intergenic 40.0%
ACATGGTATAAGGGAAAGGG+AGG + chr2.1:67267762-67267781 None:intergenic 45.0%
AGAACAAGGGAAAAAGGAGG+TGG + chr2.1:67267320-67267339 None:intergenic 45.0%
AGAATACTCTCCTGCTTCCA+GGG + chr2.1:67267814-67267833 None:intergenic 45.0%
ATAGCAAGACCCTGTCGAAA+TGG + chr2.1:67267655-67267674 None:intergenic 45.0%
ATCAAGACGTTCAATGGCAG+AGG + chr2.1:67265829-67265848 None:intergenic 45.0%
CAGTTTCACTGTGACGATTG+TGG - chr2.1:67266670-67266689 MS.gene002763:CDS 45.0%
GCATGGACCTCGTAACAAAT+TGG + chr2.1:67267735-67267754 None:intergenic 45.0%
GCTCAAGTTTGCACTAACTG+TGG - chr2.1:67266442-67266461 MS.gene002763:intron 45.0%
GTCGGTGATTGACATGTCTA+CGG - chr2.1:67268065-67268084 MS.gene002763:intron 45.0%
TATGTGTGGAGAACTCCATG+AGG - chr2.1:67267700-67267719 MS.gene002763:intron 45.0%
TGATTGACATGTCTACGGCA+TGG - chr2.1:67268070-67268089 MS.gene002763:intron 45.0%
TGTTCGTTCGATATGCAGAC+GGG - chr2.1:67266640-67266659 MS.gene002763:intron 45.0%
TTGCCGTCATTGTCATAACG+AGG - chr2.1:67266029-67266048 MS.gene002763:intron 45.0%
! AGACATGTCAATCACCGACT+TGG + chr2.1:67268064-67268083 None:intergenic 45.0%
! CACTAACTGTGGTGTCAGAA+TGG - chr2.1:67266453-67266472 MS.gene002763:intron 45.0%
ACGCAAAACGCCATGGATCA+AGG + chr2.1:67267478-67267497 None:intergenic 50.0%
CAGAATACTCTCCTGCTTCC+AGG + chr2.1:67267815-67267834 None:intergenic 50.0%
CTAAAACAGCACCGTGTTGC+AGG - chr2.1:67268655-67268674 MS.gene002763:intron 50.0%
GTCTCATTGCATCAGCAAGC+AGG + chr2.1:67267266-67267285 None:intergenic 50.0%
GTTCGTTCGATATGCAGACG+GGG - chr2.1:67266641-67266660 MS.gene002763:intron 50.0%
TCGTGCTCCTTGTTGCAATG+AGG - chr2.1:67265999-67266018 MS.gene002763:intron 50.0%
TTCTACATGTCCCTGGAAGC+AGG - chr2.1:67267801-67267820 MS.gene002763:CDS 50.0%
ACAGCACCGTGTTGCAGGTT+TGG - chr2.1:67268660-67268679 MS.gene002763:intron 55.0%
AGGGAAAGGGAGGAAGAGCA+TGG + chr2.1:67267752-67267771 None:intergenic 55.0%
CTCGACTAGGTGTATGGCTC+AGG - chr2.1:67268019-67268038 MS.gene002763:intron 55.0%
GTGACGATTGTGGGATCTGC+AGG - chr2.1:67266680-67266699 MS.gene002763:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 67265819 67268802 67265819 ID=MS.gene002763
chr2.1 mRNA 67265819 67268802 67265819 ID=MS.gene002763.t1;Parent=MS.gene002763
chr2.1 exon 67268753 67268802 67268753 ID=MS.gene002763.t1.exon1;Parent=MS.gene002763.t1
chr2.1 CDS 67268753 67268802 67268753 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67268565 67268652 67268565 ID=MS.gene002763.t1.exon2;Parent=MS.gene002763.t1
chr2.1 CDS 67268565 67268652 67268565 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67268408 67268464 67268408 ID=MS.gene002763.t1.exon3;Parent=MS.gene002763.t1
chr2.1 CDS 67268408 67268464 67268408 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67268275 67268307 67268275 ID=MS.gene002763.t1.exon4;Parent=MS.gene002763.t1
chr2.1 CDS 67268275 67268307 67268275 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67268105 67268182 67268105 ID=MS.gene002763.t1.exon5;Parent=MS.gene002763.t1
chr2.1 CDS 67268105 67268182 67268105 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67267920 67267963 67267920 ID=MS.gene002763.t1.exon6;Parent=MS.gene002763.t1
chr2.1 CDS 67267920 67267963 67267920 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67267794 67267834 67267794 ID=MS.gene002763.t1.exon7;Parent=MS.gene002763.t1
chr2.1 CDS 67267794 67267834 67267794 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67266875 67266957 67266875 ID=MS.gene002763.t1.exon8;Parent=MS.gene002763.t1
chr2.1 CDS 67266875 67266957 67266875 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67266670 67266761 67266670 ID=MS.gene002763.t1.exon9;Parent=MS.gene002763.t1
chr2.1 CDS 67266670 67266761 67266670 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67266511 67266580 67266511 ID=MS.gene002763.t1.exon10;Parent=MS.gene002763.t1
chr2.1 CDS 67266511 67266580 67266511 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67266330 67266371 67266330 ID=MS.gene002763.t1.exon11;Parent=MS.gene002763.t1
chr2.1 CDS 67266330 67266371 67266330 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
chr2.1 exon 67265819 67265944 67265819 ID=MS.gene002763.t1.exon12;Parent=MS.gene002763.t1
chr2.1 CDS 67265819 67265944 67265819 ID=cds.MS.gene002763.t1;Parent=MS.gene002763.t1
Gene Sequence

>MS.gene002763

ATGGAAGCCTCTGCCATTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTACCTTTTTCATTTTCCATAAAGTTTTCATTTTTATTCAATTTTCATTGTTTTTAAGCTTTTTAATTTTGTGGGTATTTATTTGATTTTTGATTGATAGGTGTAAGCATTATAGGAGAAGATGCAGGATTCGTGCTCCTTGTTGCAATGAGGTTTACTCTTGCCGTCATTGTCATAACGAGGCAACGGTATTTTTTTTTTTGTTCTTTTTTCCTTGTTTTCATGTTAAAAATCTTGTCTTATTGCTTTTTTCTGATCTGGGTTTGTGTTATTTTTTTTCATTTTTAGAGCATGCTGAAAAACCCTTTTGATCACCACGAACTTGTTCGTAATGATGTTGAACAAGTAAGATTAAGGGCACCTTTGATTTGTGTTTTTCAATTACTGTGCAATTTTACATGAGATGTTGATGATTGTGGTTTTTGTTTGCATCTTGTTGTTTCAGGTTGTTTGTTCAGTTTGTGACACAGAGCAACCAGTATGTATCTATTCATAATTTGATTTGAATCTGTTGTGTTTTTGTTTTTTGGATGGATTTATGATGTTTTCTCTTTAATGTTTCTTTTGAAGGTTGCTCAAGTTTGCACTAACTGTGGTGTCAGAATGGGAGAATATTACTGTGACCTCTGCAAATTCTTTGATGATGATGTAATGATTTACTGAATAAATCTGCAGTATTTGATTTAAGTTTCTTCGTTTTTCGATATGATTGAATTTGAGAATATTGTTATTATTGATTAATCTCATTGTTTTTGATTTGGTGCTGATTGTTGTTCGTTCGATATGCAGACGGGGAAACAACAGTTTCACTGTGACGATTGTGGGATCTGCAGGTACAACTGTATTTGAGTAAATAGTTTCTGAGGTTTCCCAAATTTATGAGATGCAACTAATTTTGGTTATGTAATTTGTAAACAGAGTTGGTGGGAGTGAGAATTATTTCCATTGCAAGAAGTGTGGTATGTATTTATTCATCACAAGGCTGCCATTTTTTCTCGTTTTCGATGAAACATATATTTATTTTTTTCAAATTAGCTTATGCTGCAAATTGTTAATTTTCATATTAATAGATGTTTCAATTATCTACTTCCTTTGATAGTATGAAAGAATTGCCAAACATGTTATCATCTTTAGTGACACTAGAAGTTCAAAATCACTATTACCTATTGATGATTCTATCAGCTGTTTTCTTTTTTCTGTTACAGTTGAGTACTAATCATTTTCATTCTAACATATTAGCTTTTGTCTTATCATTTTAGCTTCCAAAATCATTTTTCTATAGATGGATGGAATGAAACCTTGTTTTCTAAAGCAGTGTGTGAATTTAATACTACATATATTCCATAGAACTTCTAACCTTATTCCAACTTGTTCTCAAGTGATTTCTTATTTTACCTGCTTGCTGATGCAATGAGACGCATTTCTGTTTGATAATGTATTGGGCTTTGCCACCTCCTTTTTCCCTTGTTCTTGTTATCCTCTGAAATCAGAATCCATTTTAGGGACCTAAAAGTGGTTCTCAAAAAACAAAGAATTCAGAATCTAGTGTATCAATTCAAATAGTATAGTTCAAACCCTTGTGATCTATGGTAGTTACCCAAAAAAACCTTGATCCATGGCGTTTTGCGTTTTTTTGAAAGGTTAGCCTCAGTTGGCAATAGTTTTCTCTGAATTCATCTATTATGGATTGTTTTGTTTCCATTGGACTTTGGAGTCATATCTAATAAATTTATCGACTTGGTTAGTGGAACTATTTTTTTCTTCTGTTTTAAAATAAATTGCTCCATTTCGACAGGGTCTTGCTATTCAGTTGCTCTGCGTGATAACCATTTATGTGTGGAGAACTCCATGAGGCATCATTGTCCAATTTGTTACGAGGTCCATGCTCTTCCTCCCTTTCCCTTATACCATGTTTTCATTTAAACAAGGAATTTCTACATGTCCCTGGAAGCAGGAGAGTATTCTGATGTGACTTTATTGTGTTTCTACAGTACCTTTTTGACTCATTGAAAGATACAACCGTTATGAAATGTGGCCACACAATGCATTGTGAATGTTACCATGAGATGATAAAGCGTGACAAGTGAGTATATTGCTTACTATTTGACAGTTATTTCGTTTATAAAGCATTATCTCTTATGTAATATTAACTCGACTAGGTGTATGGCTCAGGTACTGTTGTCCCATATGTTCCAAGTCGGTGATTGACATGTCTACGGCATGGAAGAGAATTGATGAAGAGGTAGCTGGTTAAATTACATGCATCTGTTTTCACTTGATTTTAAGTTTTTATGCTCCACAATTATCTGGTCAAGAACATTGAATATATATGTTCTTTACTACAATTGTGATTTCTAACTAATTTATTTTTGCTATATTAGATCGAAGCAACTGTCATGCCTGATGATTATCGGAATAGAAAGGTAAAACTATAGTCCTAGTAATACTAGTTTAATACATGCTATCTCTAATTGTCTACATTTCATTCACAGCCGCAAGAACCTTCATATTTGACATCAAACATGCTTATGGGCATGACCAATGTTGTCAATTGTGCGTTGCAGAAAATAGAGATTCGTTAAAATTTCGATACGCTACAGTGCTATAGCGTCGCTATAGCCCACTATTTGACTTCACTTTGTACTAAATAGCGTATTGCAAACGATAGTGATTTGTTCAAATTCTGTTTTGCTATAACTGTTATTTGACAATACTAAGCATGAATGGACCTTTTGTCCTTTCTTTCACATGCATATATCATGGTTATATTAGCAAATTTCTGAGAACTAAAACAGCACCGTGTTGCAGGTTTGGATACTTTGTAACGACTGCAACGATACAACCGAAGTTTCCTTCCACATTATTGGGCATAAATGCGGTCACTGCAGTTCATATAACACTCGTGCTATTGCTCCTCCTGTTCTTCCGCAATAA
Protein sequence

>MS.gene002763.t1

MEASAIERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLKNPFDHHELVRNDVEQVVCSVCDTEQPVAQVCTNCGVRMGEYYCDLCKFFDDDTGKQQFHCDDCGICRVGGSENYFHCKKCGSCYSVALRDNHLCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSTAWKRIDEEIEATVMPDDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCSSYNTRAIAPPVLPQ