Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09127.t1 | RHN60647.1 | 96.8 | 281 | 9 | 0 | 1 | 281 | 40 | 320 | 2.30E-144 | 521.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09127.t1 | Q9FFB6 | 70.3 | 266 | 78 | 1 | 16 | 280 | 22 | 287 | 1.2e-99 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09127.t1 | A0A396ICV1 | 96.8 | 281 | 9 | 0 | 1 | 281 | 40 | 320 | 1.7e-144 | 521.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09127 | MS.gene46900 | PPI |
| MS.gene43374 | MS.gene09127 | PPI |
| MS.gene09127 | MS.gene41351 | PPI |
| MS.gene09127 | MS.gene000372 | PPI |
| MS.gene86321 | MS.gene09127 | PPI |
| MS.gene53701 | MS.gene09127 | PPI |
| MS.gene09127 | MS.gene46902 | PPI |
| MS.gene09127 | MS.gene072976 | PPI |
| MS.gene014764 | MS.gene09127 | PPI |
| MS.gene09127 | MS.gene004457 | PPI |
| MS.gene09127 | MS.gene002763 | PPI |
| MS.gene015919 | MS.gene09127 | PPI |
| MS.gene09127 | MS.gene54097 | PPI |
| MS.gene09127 | MS.gene00991 | PPI |
| MS.gene96207 | MS.gene09127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09127.t1 | MTR_4g057310 | 96.403 | 278 | 10 | 0 | 4 | 281 | 1 | 278 | 0.0 | 549 |
| MS.gene09127.t1 | MTR_4g057310 | 96.774 | 217 | 7 | 0 | 1 | 217 | 1 | 217 | 4.78e-156 | 434 |
| MS.gene09127.t1 | MTR_7g102990 | 69.962 | 263 | 76 | 1 | 17 | 279 | 20 | 279 | 3.64e-144 | 407 |
| MS.gene09127.t1 | MTR_3g108240 | 71.774 | 248 | 70 | 0 | 19 | 266 | 62 | 309 | 7.10e-138 | 391 |
| MS.gene09127.t1 | MTR_3g108240 | 67.939 | 262 | 84 | 0 | 5 | 266 | 46 | 307 | 1.11e-136 | 388 |
| MS.gene09127.t1 | MTR_1g047740 | 64.103 | 273 | 91 | 2 | 1 | 266 | 29 | 301 | 2.48e-134 | 382 |
| MS.gene09127.t1 | MTR_2g020040 | 57.895 | 247 | 103 | 1 | 18 | 264 | 15 | 260 | 2.34e-111 | 322 |
| MS.gene09127.t1 | MTR_1g010150 | 66.829 | 205 | 68 | 0 | 62 | 266 | 1 | 205 | 5.74e-109 | 314 |
| MS.gene09127.t1 | MTR_7g102990 | 72.000 | 175 | 49 | 0 | 17 | 191 | 20 | 194 | 3.62e-98 | 287 |
| MS.gene09127.t1 | MTR_8g104410 | 39.464 | 261 | 138 | 7 | 19 | 273 | 761 | 1007 | 1.05e-55 | 193 |
| MS.gene09127.t1 | MTR_8g104410 | 39.464 | 261 | 138 | 7 | 19 | 273 | 997 | 1243 | 1.43e-55 | 193 |
| MS.gene09127.t1 | MTR_6g083900 | 40.541 | 259 | 135 | 8 | 19 | 271 | 986 | 1231 | 1.84e-52 | 184 |
| MS.gene09127.t1 | MTR_4g107440 | 39.683 | 252 | 132 | 8 | 19 | 264 | 1034 | 1271 | 5.10e-52 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09127.t1 | AT5G22920 | 68.539 | 267 | 83 | 1 | 15 | 280 | 21 | 287 | 2.01e-141 | 399 |
| MS.gene09127.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 3.54e-125 | 359 |
| MS.gene09127.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 3.54e-125 | 359 |
| MS.gene09127.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 3.54e-125 | 359 |
| MS.gene09127.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 3.54e-125 | 359 |
| MS.gene09127.t1 | AT5G25560 | 60.227 | 264 | 105 | 0 | 3 | 266 | 40 | 303 | 3.56e-122 | 351 |
| MS.gene09127.t1 | AT5G25560 | 62.016 | 258 | 88 | 1 | 19 | 266 | 61 | 318 | 4.14e-122 | 352 |
| MS.gene09127.t1 | AT5G22920 | 70.046 | 217 | 65 | 0 | 15 | 231 | 21 | 237 | 3.37e-117 | 336 |
| MS.gene09127.t1 | AT5G18650 | 58.300 | 247 | 102 | 1 | 18 | 264 | 15 | 260 | 3.80e-111 | 322 |
| MS.gene09127.t1 | AT3G62970 | 55.285 | 246 | 108 | 2 | 19 | 264 | 33 | 276 | 1.78e-102 | 301 |
| MS.gene09127.t1 | AT3G62970 | 54.460 | 213 | 96 | 1 | 19 | 231 | 33 | 244 | 2.99e-89 | 266 |
| MS.gene09127.t1 | AT3G62970 | 55.612 | 196 | 86 | 1 | 19 | 214 | 33 | 227 | 5.92e-84 | 252 |
| MS.gene09127.t1 | AT1G74770 | 42.007 | 269 | 137 | 7 | 1 | 264 | 1005 | 1259 | 8.22e-61 | 208 |
| MS.gene09127.t1 | AT1G18910 | 42.742 | 248 | 125 | 6 | 19 | 262 | 1018 | 1252 | 6.89e-56 | 194 |
| MS.gene09127.t1 | AT3G18290 | 39.921 | 253 | 132 | 7 | 19 | 265 | 1004 | 1242 | 1.57e-53 | 187 |
| MS.gene09127.t1 | AT1G74770 | 40.909 | 220 | 111 | 7 | 1 | 215 | 1005 | 1210 | 3.78e-43 | 157 |
Find 42 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACTCTTCTTCAAATTT+TGG | 0.067213 | 4.1:-40892100 | MS.gene09127:CDS |
| TTGTATTTGCCTTGTGTTGT+AGG | 0.202677 | 4.1:+40888390 | None:intergenic |
| TCCGCGTCATGAAGTTAAAA+AGG | 0.253066 | 4.1:-40891461 | MS.gene09127:intron |
| TGAAGAAGAGTGTGTATTAG+TGG | 0.365797 | 4.1:+40892108 | None:intergenic |
| TAATTGTCCTATTTGCTTTG+AGG | 0.369079 | 4.1:-40890549 | MS.gene09127:intron |
| GTCTTTACCTCAAAGCAAAT+AGG | 0.376646 | 4.1:+40890542 | None:intergenic |
| CTTCTAGCTCATGCTCGTCT+AGG | 0.428953 | 4.1:-40888360 | MS.gene09127:CDS |
| ATCTTGTTCTGTGTCACATA+AGG | 0.473360 | 4.1:+40891344 | None:intergenic |
| CATAAACTGTGGAGTATGCT+TGG | 0.478676 | 4.1:-40891204 | MS.gene09127:CDS |
| TTCTAGCTCATGCTCGTCTA+GGG | 0.485699 | 4.1:-40888359 | MS.gene09127:CDS |
| GGAATATCATGACGATCATC+AGG | 0.490854 | 4.1:+40891481 | None:intergenic |
| CTAGACGAGCATGAGCTAGA+AGG | 0.504224 | 4.1:+40888361 | None:intergenic |
| TGATTCAGGCATTGGAGTTG+AGG | 0.511404 | 4.1:+40890083 | None:intergenic |
| ATGCCCCTCTTTGATTTCGA+CGG | 0.518083 | 4.1:+40890598 | None:intergenic |
| GTGGAAGAACCTTGACCAAA+TGG | 0.522318 | 4.1:-40890206 | MS.gene09127:intron |
| CTTTGAGTGTGTTAAAGAGA+TGG | 0.536365 | 4.1:-40890367 | MS.gene09127:CDS |
| TGGATATTGTGCAATGATTG+TGG | 0.564165 | 4.1:-40888469 | MS.gene09127:CDS |
| ATAAACTGTGGAGTATGCTT+GGG | 0.564301 | 4.1:-40891203 | MS.gene09127:CDS |
| ATCTACATACCATTTGGTCA+AGG | 0.572118 | 4.1:+40890197 | None:intergenic |
| ATCATCAGGCTTAATCTCAT+CGG | 0.572291 | 4.1:+40891495 | None:intergenic |
| GTGATGAATGTGGCATCTGC+AGG | 0.575272 | 4.1:-40891015 | MS.gene09127:intron |
| TTAGTGGATTCATATGACTC+TGG | 0.593486 | 4.1:+40892124 | None:intergenic |
| TACAACACAAGGCAAATACA+AGG | 0.597559 | 4.1:-40888388 | MS.gene09127:CDS |
| CCACAATGTGGAATTGCACA+TGG | 0.603156 | 4.1:+40888437 | None:intergenic |
| GCACTGCCACAATGAAGCTA+AGG | 0.605639 | 4.1:-40891892 | MS.gene09127:intron |
| TTAGATGCACACATTACAGA+AGG | 0.606395 | 4.1:-40891962 | MS.gene09127:intron |
| AACACTTATGTGCCACAATG+TGG | 0.611474 | 4.1:+40888425 | None:intergenic |
| GGATTCATATGACTCTGGCA+TGG | 0.620691 | 4.1:+40892129 | None:intergenic |
| GAAATCAGTGTCTTACCTTG+TGG | 0.632283 | 4.1:-40890402 | MS.gene09127:CDS |
| AAGTGTATAGTGTGGCCACA+AGG | 0.633790 | 4.1:+40890387 | None:intergenic |
| TATTCCGTCGAAATCAAAGA+GGG | 0.638194 | 4.1:-40890602 | MS.gene09127:CDS |
| CTATTCCGTCGAAATCAAAG+AGG | 0.676093 | 4.1:-40890603 | MS.gene09127:CDS |
| CCATGTGCAATTCCACATTG+TGG | 0.678652 | 4.1:-40888437 | MS.gene09127:CDS |
| TTTGTACCTTAGCTTCATTG+TGG | 0.682807 | 4.1:+40891886 | None:intergenic |
| CAATACCACTGTGATGAATG+TGG | 0.682908 | 4.1:-40891025 | MS.gene09127:CDS |
| CACACTCAAAGTGTATAGTG+TGG | 0.689250 | 4.1:+40890379 | None:intergenic |
| GTTGCAACTCCTACAACACA+AGG | 0.691870 | 4.1:-40888399 | MS.gene09127:CDS |
| CACAATGTGGAATTGCACAT+GGG | 0.692219 | 4.1:+40888438 | None:intergenic |
| CAACAGAACTGCATAAACTG+TGG | 0.699260 | 4.1:-40891215 | MS.gene09127:CDS |
| TCTGTGATATGTCAAGTGTG+TGG | 0.700300 | 4.1:-40890225 | MS.gene09127:CDS |
| ATTCCGTCGAAATCAAAGAG+GGG | 0.736632 | 4.1:-40890601 | MS.gene09127:CDS |
| AGATGCCACATTCATCACAG+TGG | 0.779714 | 4.1:+40891020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTCATGTAAAAATT+TGG | - | chr4.1:40888885-40888904 | MS.gene09127:intron | 10.0% |
| !! | ATCTAAATTGAAAAAAAATA+AGG | + | chr4.1:40888499-40888518 | None:intergenic | 10.0% |
| !! | TTGATCATATAAAATTAAAA+AGG | - | chr4.1:40890848-40890867 | MS.gene09127:intron | 10.0% |
| !!! | TGTGTATATATTTTATATAT+AGG | - | chr4.1:40889188-40889207 | MS.gene09127:intron | 10.0% |
| !! | CCAAATTCTTAAATTATTAT+CGG | + | chr4.1:40890524-40890543 | None:intergenic | 15.0% |
| !! | TAACAAAAAATGTTATTGAT+CGG | + | chr4.1:40888686-40888705 | None:intergenic | 15.0% |
| !!! | AAACATGTATATTTTTGTTT+AGG | - | chr4.1:40889843-40889862 | MS.gene09127:intron | 15.0% |
| !!! | AATTATATTGTTTGTTTCTT+TGG | - | chr4.1:40888611-40888630 | MS.gene09127:intron | 15.0% |
| !!! | ATATACACATTGATTATTAA+TGG | + | chr4.1:40889177-40889196 | None:intergenic | 15.0% |
| !!! | ATGGTTTTATAATAGAAAAA+TGG | - | chr4.1:40888447-40888466 | MS.gene09127:CDS | 15.0% |
| !!! | TGTTTTGATTAAATTACTTA+AGG | + | chr4.1:40890932-40890951 | None:intergenic | 15.0% |
| !! | AATATATGTGTATCAAATGA+TGG | - | chr4.1:40890151-40890170 | MS.gene09127:intron | 20.0% |
| !! | ACAACAAAATACAAAATTGA+AGG | + | chr4.1:40890623-40890642 | None:intergenic | 20.0% |
| !! | CCGATAATAATTTAAGAATT+TGG | - | chr4.1:40890521-40890540 | MS.gene09127:intron | 20.0% |
| !! | GAATATATACTAATAACAGT+TGG | + | chr4.1:40889964-40889983 | None:intergenic | 20.0% |
| !! | TACATAATTGAAATATCCTT+CGG | - | chr4.1:40890971-40890990 | MS.gene09127:intron | 20.0% |
| !! | TATCAAAAAGAAACAAAATG+TGG | - | chr4.1:40891084-40891103 | MS.gene09127:intron | 20.0% |
| !! | TCAAAAATTTCATTACAACA+TGG | + | chr4.1:40888557-40888576 | None:intergenic | 20.0% |
| !! | TGAAAAGTTACAAATGAAAT+AGG | + | chr4.1:40889100-40889119 | None:intergenic | 20.0% |
| !! | TGAAATATTGAAATGATGAT+TGG | - | chr4.1:40891829-40891848 | MS.gene09127:intron | 20.0% |
| !! | TGAATCATACAAAAATAAGA+AGG | - | chr4.1:40890408-40890427 | MS.gene09127:CDS | 20.0% |
| !! | TTGACCATATGAAATTAAAA+AGG | + | chr4.1:40890745-40890764 | None:intergenic | 20.0% |
| !!! | ATGACCTTTTTAATTTCATA+TGG | - | chr4.1:40890738-40890757 | MS.gene09127:intron | 20.0% |
| !!! | ATTTTTGTTTCTTTTAGTTC+AGG | - | chr4.1:40889371-40889390 | MS.gene09127:intron | 20.0% |
| !!! | GGAATGACTTTTATTTTTTT+TGG | + | chr4.1:40891623-40891642 | None:intergenic | 20.0% |
| !!! | GTGATCTTATTTTGTTTTTA+AGG | - | chr4.1:40891881-40891900 | MS.gene09127:intron | 20.0% |
| !!! | GTTTTATAATAGAAAAATGG+AGG | - | chr4.1:40888450-40888469 | MS.gene09127:CDS | 20.0% |
| !!! | TATATATAGGTATTGAATGT+AGG | - | chr4.1:40889201-40889220 | MS.gene09127:intron | 20.0% |
| !!! | TATTTTACAAAATTCACAGT+TGG | - | chr4.1:40888710-40888729 | MS.gene09127:intron | 20.0% |
| !!! | TGTTTTGACTAAATTACTTA+CGG | - | chr4.1:40890661-40890680 | MS.gene09127:intron | 20.0% |
| !!! | TTCTTATTTTTGTATGATTC+AGG | + | chr4.1:40890409-40890428 | None:intergenic | 20.0% |
| !!! | TTTTGTACACAAATAATTGA+AGG | - | chr4.1:40891744-40891763 | MS.gene09127:intron | 20.0% |
| ! | AAAAAATAAGTCTCCAACTA+AGG | + | chr4.1:40891184-40891203 | None:intergenic | 25.0% |
| ! | AAAAGATAATAGAAAACGTG+AGG | - | chr4.1:40891261-40891280 | MS.gene09127:intron | 25.0% |
| ! | AAAAGATAATAGAAAACGTG+AGG | + | chr4.1:40891280-40891261 | None:intergenic | 25.0% |
| ! | ACAAAATACAAAATTGAAGG+TGG | + | chr4.1:40890620-40890639 | None:intergenic | 25.0% |
| ! | AGCAATTAGCATATGTTAAT+TGG | + | chr4.1:40890817-40890836 | None:intergenic | 25.0% |
| ! | ATAAATCTTCAATCTTTGCA+TGG | + | chr4.1:40891917-40891936 | None:intergenic | 25.0% |
| ! | ATACGCTACTATCAAATAAA+AGG | + | chr4.1:40890893-40890912 | None:intergenic | 25.0% |
| ! | ATGTCGAATAGAAAATATTC+TGG | + | chr4.1:40889518-40889537 | None:intergenic | 25.0% |
| ! | CTAAATAACAGAAGAATATG+AGG | + | chr4.1:40891021-40891040 | None:intergenic | 25.0% |
| ! | TATACATGTTTACAACAATC+AGG | + | chr4.1:40889834-40889853 | None:intergenic | 25.0% |
| ! | TGGAATATTGAAATGATGAT+TGG | + | chr4.1:40890600-40890619 | None:intergenic | 25.0% |
| ! | TGTATTTCGACTTCATATAA+TGG | - | chr4.1:40890335-40890354 | MS.gene09127:intron | 25.0% |
| ! | TTCAAAATCTACATACCATT+TGG | + | chr4.1:40890287-40890306 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCTTCTTTGTAG+TGG | - | chr4.1:40891706-40891725 | MS.gene09127:intron | 25.0% |
| !! | TATGCTAATTGTCTTTTACA+AGG | + | chr4.1:40890769-40890788 | None:intergenic | 25.0% |
| !! | TCTGGAATTATCAAATAGAT+TGG | + | chr4.1:40889500-40889519 | None:intergenic | 25.0% |
| !! | TTTCATGAACTATAGTCTTA+TGG | - | chr4.1:40888428-40888447 | MS.gene09127:CDS | 25.0% |
| !! | TTTTTCCATTGCAAAAAATG+CGG | - | chr4.1:40889608-40889627 | MS.gene09127:intron | 25.0% |
| !!! | ATACTAATAACAGTTGGTTT+TGG | + | chr4.1:40889958-40889977 | None:intergenic | 25.0% |
| !!! | GTAATGAAATTTTTGACTGT+AGG | - | chr4.1:40888561-40888580 | MS.gene09127:intron | 25.0% |
| !!! | TAGTTGGAGACTTATTTTTT+TGG | - | chr4.1:40891184-40891203 | MS.gene09127:CDS | 25.0% |
| !!! | TGAATATTTTTCAATGTTGC+AGG | - | chr4.1:40889235-40889254 | MS.gene09127:intron | 25.0% |
| AAGAGATGGAAAAACATCAT+AGG | - | chr4.1:40890122-40890141 | MS.gene09127:intron | 30.0% | |
| ACACACTACTATCAAATAGA+AGG | - | chr4.1:40890700-40890719 | MS.gene09127:intron | 30.0% | |
| ACATGATCATGATCATGTAT+TGG | + | chr4.1:40891431-40891450 | None:intergenic | 30.0% | |
| AGACTCGTTAACTTAACATT+CGG | - | chr4.1:40888649-40888668 | MS.gene09127:intron | 30.0% | |
| AGAGTGAATCAATACCATAA+AGG | + | chr4.1:40890188-40890207 | None:intergenic | 30.0% | |
| ATAAAAGTCATTCCGACTAA+AGG | - | chr4.1:40891629-40891648 | MS.gene09127:intron | 30.0% | |
| ATCATATAATTAGAGACCGA+AGG | + | chr4.1:40890990-40891009 | None:intergenic | 30.0% | |
| ATCATATAGTTAGCGACTAA+AGG | - | chr4.1:40891798-40891817 | MS.gene09127:intron | 30.0% | |
| ATGGAAAAACATCATAGGTA+AGG | - | chr4.1:40890127-40890146 | MS.gene09127:intron | 30.0% | |
| ATTCATAGATAAAGAAAGCC+TGG | + | chr4.1:40890456-40890475 | None:intergenic | 30.0% | |
| CAATACAATGTGCACAATTA+AGG | + | chr4.1:40889397-40889416 | None:intergenic | 30.0% | |
| CATGTAAAAATTTGGAGAAG+TGG | - | chr4.1:40888893-40888912 | MS.gene09127:intron | 30.0% | |
| CATTGTTAATCATTGAAGCA+CGG | - | chr4.1:40890476-40890495 | MS.gene09127:intron | 30.0% | |
| TAATTGTCCTATTTGCTTTG+AGG | - | chr4.1:40889926-40889945 | MS.gene09127:intron | 30.0% | |
| TGATTGTTTACTCCTTTAGT+CGG | + | chr4.1:40891644-40891663 | None:intergenic | 30.0% | |
| TGGATTGAAATGTTCCTTTA+TGG | - | chr4.1:40890171-40890190 | MS.gene09127:intron | 30.0% | |
| TTCATAGATAAAGAAAGCCT+GGG | + | chr4.1:40890455-40890474 | None:intergenic | 30.0% | |
| TTCTGTCTTTACTAATGACA+AGG | + | chr4.1:40891472-40891491 | None:intergenic | 30.0% | |
| ! | ACACACTCTTCTTCAAATTT+TGG | - | chr4.1:40888375-40888394 | MS.gene09127:CDS | 30.0% |
| ! | ATGATGATGTAAGTTCTGTA+GGG | - | chr4.1:40889327-40889346 | MS.gene09127:intron | 30.0% |
| ! | ATTCACTCTTTTGAACATTC+AGG | - | chr4.1:40890199-40890218 | MS.gene09127:intron | 30.0% |
| ! | CACACTCTTCTTCAAATTTT+GGG | - | chr4.1:40888376-40888395 | MS.gene09127:CDS | 30.0% |
| ! | TTTTGCCTTTACCAATTACA+AGG | - | chr4.1:40891346-40891365 | MS.gene09127:CDS | 30.0% |
| ! | TTTTTGTATGATTCAGGCAT+TGG | + | chr4.1:40890403-40890422 | None:intergenic | 30.0% |
| !! | CAGTTTTGTGTTGAAACTTT+TGG | - | chr4.1:40890361-40890380 | MS.gene09127:CDS | 30.0% |
| !! | TTCTTTTTGATAGCAGTTGA+AGG | + | chr4.1:40891076-40891095 | None:intergenic | 30.0% |
| !! | TTTCTTTGGTCTTCTTTTAG+CGG | - | chr4.1:40888625-40888644 | MS.gene09127:intron | 30.0% |
| AATAGAAAACGTGAGGATGA+TGG | + | chr4.1:40891551-40891570 | None:intergenic | 35.0% | |
| AGATTCTCGCTATAAACCAT+TGG | - | chr4.1:40889667-40889686 | MS.gene09127:intron | 35.0% | |
| AGTAAGACAGTGAACAAACA+AGG | + | chr4.1:40889073-40889092 | None:intergenic | 35.0% | |
| AGTCACACATTTCTAACTAG+TGG | - | chr4.1:40891963-40891982 | MS.gene09127:intron | 35.0% | |
| ATAAACTGTGGAGTATGCTT+GGG | - | chr4.1:40889272-40889291 | MS.gene09127:intron | 35.0% | |
| ATCATCAGGCTTAATCTCAT+CGG | + | chr4.1:40888983-40889002 | None:intergenic | 35.0% | |
| ATCTACATACCATTTGGTCA+AGG | + | chr4.1:40890281-40890300 | None:intergenic | 35.0% | |
| ATCTTGTTCTGTGTCACATA+AGG | + | chr4.1:40889134-40889153 | None:intergenic | 35.0% | |
| CACTTCCTTGTAATTGGTAA+AGG | + | chr4.1:40891354-40891373 | None:intergenic | 35.0% | |
| CTAAAGGAGTAAACAATCAG+AGG | - | chr4.1:40891645-40891664 | MS.gene09127:intron | 35.0% | |
| CTTTGAGTGTGTTAAAGAGA+TGG | - | chr4.1:40890108-40890127 | MS.gene09127:intron | 35.0% | |
| GAAACCATTGTGGTTTGATA+TGG | - | chr4.1:40891235-40891254 | MS.gene09127:intron | 35.0% | |
| GAAACCATTGTGGTTTGATA+TGG | + | chr4.1:40891254-40891235 | None:intergenic | 35.0% | |
| GATAATAGAAAACGTGAGGA+TGG | - | chr4.1:40891265-40891284 | MS.gene09127:intron | 35.0% | |
| GCTAGAAAAGTTGTTGAATG+AGG | + | chr4.1:40891522-40891541 | None:intergenic | 35.0% | |
| GTATCAAACAGATACTGCAA+GGG | + | chr4.1:40890046-40890065 | None:intergenic | 35.0% | |
| GTATGTGAAAGAAACCATTG+TGG | - | chr4.1:40891225-40891244 | MS.gene09127:intron | 35.0% | |
| GTCTTTACCTCAAAGCAAAT+AGG | + | chr4.1:40889936-40889955 | None:intergenic | 35.0% | |
| TAATGACAAGGAAACGTTAG+TGG | + | chr4.1:40891460-40891479 | None:intergenic | 35.0% | |
| TACAACACAAGGCAAATACA+AGG | - | chr4.1:40892087-40892106 | MS.gene09127:intron | 35.0% | |
| TACTTGTATGAAAGCAGGTA+TGG | - | chr4.1:40891986-40892005 | MS.gene09127:intron | 35.0% | |
| TATTCCGTCGAAATCAAAGA+GGG | - | chr4.1:40889873-40889892 | MS.gene09127:intron | 35.0% | |
| TGATCATGATCATGTATTGG+TGG | + | chr4.1:40891428-40891447 | None:intergenic | 35.0% | |
| TGGATATTGTGCAATGATTG+TGG | - | chr4.1:40892006-40892025 | MS.gene09127:intron | 35.0% | |
| TGTATCAAACAGATACTGCA+AGG | + | chr4.1:40890047-40890066 | None:intergenic | 35.0% | |
| TTAGATGCACACATTACAGA+AGG | - | chr4.1:40888513-40888532 | MS.gene09127:intron | 35.0% | |
| TTCACCATATCAAACCACAA+TGG | - | chr4.1:40891576-40891595 | MS.gene09127:intron | 35.0% | |
| TTCACCATATCAAACCACAA+TGG | + | chr4.1:40891595-40891576 | None:intergenic | 35.0% | |
| TTCTTCTTTGTAGTGGTTGA+AGG | - | chr4.1:40891713-40891732 | MS.gene09127:intron | 35.0% | |
| TTGTATTTGCCTTGTGTTGT+AGG | + | chr4.1:40892088-40892107 | None:intergenic | 35.0% | |
| TTTCTTCTGTGTACCTTAGT+TGG | - | chr4.1:40891168-40891187 | MS.gene09127:CDS | 35.0% | |
| TTTGTACCTTAGCTTCATTG+TGG | + | chr4.1:40888592-40888611 | None:intergenic | 35.0% | |
| ! | CAGATAGATTTTGAGCAAAC+AGG | + | chr4.1:40890234-40890253 | None:intergenic | 35.0% |
| ! | GATGATGATGTAAGTTCTGT+AGG | - | chr4.1:40889326-40889345 | MS.gene09127:intron | 35.0% |
| ! | TACCAATTACAAGGAAGTGT+TGG | - | chr4.1:40891355-40891374 | MS.gene09127:CDS | 35.0% |
| ! | TGAAGAAGAGTGTGTATTAG+TGG | + | chr4.1:40888370-40888389 | None:intergenic | 35.0% |
| !! | AATTGCTTTTACAGAACTGG+TGG | - | chr4.1:40889575-40889594 | MS.gene09127:intron | 35.0% |
| !! | CGTAATTGCTTTTACAGAAC+TGG | - | chr4.1:40889572-40889591 | MS.gene09127:intron | 35.0% |
| !! | TTAGTGGATTCATATGACTC+TGG | + | chr4.1:40888354-40888373 | None:intergenic | 35.0% |
| !! | TTTTTGATAGCAGTTGAAGG+AGG | + | chr4.1:40891073-40891092 | None:intergenic | 35.0% |
| !!! | ACCTTTTTAACTTCATGACG+CGG | + | chr4.1:40889018-40889037 | None:intergenic | 35.0% |
| AACACTTATGTGCCACAATG+TGG | + | chr4.1:40892053-40892072 | None:intergenic | 40.0% | |
| AATAGAAAACGTGAGGATGG+TGG | - | chr4.1:40891268-40891287 | MS.gene09127:intron | 40.0% | |
| AGATGTTTGTGCATTGCCAA+TGG | + | chr4.1:40889686-40889705 | None:intergenic | 40.0% | |
| AGTGGTACTTGTATGAAAGC+AGG | - | chr4.1:40891981-40892000 | MS.gene09127:intron | 40.0% | |
| ATCAGACGAAACACTAAGTC+AGG | + | chr4.1:40891141-40891160 | None:intergenic | 40.0% | |
| ATTCCGTCGAAATCAAAGAG+GGG | - | chr4.1:40889874-40889893 | MS.gene09127:intron | 40.0% | |
| CAACAGAACTGCATAAACTG+TGG | - | chr4.1:40889260-40889279 | MS.gene09127:intron | 40.0% | |
| CAATACCACTGTGATGAATG+TGG | - | chr4.1:40889450-40889469 | MS.gene09127:intron | 40.0% | |
| CACAATGTGGAATTGCACAT+GGG | + | chr4.1:40892040-40892059 | None:intergenic | 40.0% | |
| CACACTCAAAGTGTATAGTG+TGG | + | chr4.1:40890099-40890118 | None:intergenic | 40.0% | |
| CACCAACACTTCCTTGTAAT+TGG | + | chr4.1:40891360-40891379 | None:intergenic | 40.0% | |
| CATAAACTGTGGAGTATGCT+TGG | - | chr4.1:40889271-40889290 | MS.gene09127:intron | 40.0% | |
| CTATTCCGTCGAAATCAAAG+AGG | - | chr4.1:40889872-40889891 | MS.gene09127:intron | 40.0% | |
| GAAATCAGTGTCTTACCTTG+TGG | - | chr4.1:40890073-40890092 | MS.gene09127:CDS | 40.0% | |
| GGAATATCATGACGATCATC+AGG | + | chr4.1:40888997-40889016 | None:intergenic | 40.0% | |
| GGTTTCTTTCACATACACAG+AGG | + | chr4.1:40891221-40891240 | None:intergenic | 40.0% | |
| TCCGCGTCATGAAGTTAAAA+AGG | - | chr4.1:40889014-40889033 | MS.gene09127:intron | 40.0% | |
| TCTGTGATATGTCAAGTGTG+TGG | - | chr4.1:40890250-40890269 | MS.gene09127:CDS | 40.0% | |
| TTGAAGACGTGTCTAGTGTT+TGG | + | chr4.1:40889790-40889809 | None:intergenic | 40.0% | |
| ! | TGTATGATGATGTTGCGTGA+GGG | - | chr4.1:40891495-40891514 | MS.gene09127:CDS | 40.0% |
| ! | TTGTATGATGATGTTGCGTG+AGG | - | chr4.1:40891494-40891513 | MS.gene09127:CDS | 40.0% |
| !! | CAATTACAAGGAAGTGTTGG+TGG | - | chr4.1:40891358-40891377 | MS.gene09127:intron | 40.0% |
| !!! | ACTCACCGCATTTTTTGCAA+TGG | + | chr4.1:40889616-40889635 | None:intergenic | 40.0% |
| AAGTGTATAGTGTGGCCACA+AGG | + | chr4.1:40890091-40890110 | None:intergenic | 45.0% | |
| AGATGCCACATTCATCACAG+TGG | + | chr4.1:40889458-40889477 | None:intergenic | 45.0% | |
| ATGGTTTCTTTCACACGCAG+AGG | - | chr4.1:40891595-40891614 | MS.gene09127:intron | 45.0% | |
| CAAGGAAACGTTAGTGGTGA+TGG | + | chr4.1:40891454-40891473 | None:intergenic | 45.0% | |
| CCACAATGTGGAATTGCACA+TGG | + | chr4.1:40892041-40892060 | None:intergenic | 45.0% | |
| CCATGTGCAATTCCACATTG+TGG | - | chr4.1:40892038-40892057 | MS.gene09127:intron | 45.0% | |
| GCGTGTGAAAGAAACCATTG+TGG | + | chr4.1:40891593-40891612 | None:intergenic | 45.0% | |
| GGATTCATATGACTCTGGCA+TGG | + | chr4.1:40888349-40888368 | None:intergenic | 45.0% | |
| GTGGAAGAACCTTGACCAAA+TGG | - | chr4.1:40890269-40890288 | MS.gene09127:intron | 45.0% | |
| GTTGCAACTCCTACAACACA+AGG | - | chr4.1:40892076-40892095 | MS.gene09127:intron | 45.0% | |
| TTATAACAACTCCAGCTCCC+AGG | - | chr4.1:40890435-40890454 | MS.gene09127:intron | 45.0% | |
| ! | ATGCCCCTCTTTGATTTCGA+CGG | + | chr4.1:40889880-40889899 | None:intergenic | 45.0% |
| !! | TGATTCAGGCATTGGAGTTG+AGG | + | chr4.1:40890395-40890414 | None:intergenic | 45.0% |
| !! | TTCTAGCTCATGCTCGTCTA+GGG | - | chr4.1:40892116-40892135 | MS.gene09127:CDS | 45.0% |
| CTAGACGAGCATGAGCTAGA+AGG | + | chr4.1:40892117-40892136 | None:intergenic | 50.0% | |
| GATAAAGAAAGCCTGGGAGC+TGG | + | chr4.1:40890449-40890468 | None:intergenic | 50.0% | |
| GCACTGCCACAATGAAGCTA+AGG | - | chr4.1:40888583-40888602 | MS.gene09127:intron | 50.0% | |
| GCATTGGAGTTGAGGAAAGC+TGG | + | chr4.1:40890387-40890406 | None:intergenic | 50.0% | |
| GTGATGAATGTGGCATCTGC+AGG | - | chr4.1:40889460-40889479 | MS.gene09127:intron | 50.0% | |
| !! | CAAGGAAGTGTTGGTGGTGA+TGG | - | chr4.1:40891364-40891383 | MS.gene09127:intron | 50.0% |
| !! | CTTCTAGCTCATGCTCGTCT+AGG | - | chr4.1:40892115-40892134 | MS.gene09127:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40888339 | 40892158 | 40888339 | ID=MS.gene09127 |
| chr4.1 | mRNA | 40888339 | 40892158 | 40888339 | ID=MS.gene09127.t1;Parent=MS.gene09127 |
| chr4.1 | exon | 40892100 | 40892158 | 40892100 | ID=MS.gene09127.t1.exon1;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40892100 | 40892158 | 40892100 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40891893 | 40891980 | 40891893 | ID=MS.gene09127.t1.exon2;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40891893 | 40891980 | 40891893 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40891462 | 40891521 | 40891462 | ID=MS.gene09127.t1.exon3;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40891462 | 40891521 | 40891462 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40891344 | 40891376 | 40891344 | ID=MS.gene09127.t1.exon4;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40891344 | 40891376 | 40891344 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40891163 | 40891240 | 40891163 | ID=MS.gene09127.t1.exon5;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40891163 | 40891240 | 40891163 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40891016 | 40891059 | 40891016 | ID=MS.gene09127.t1.exon6;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40891016 | 40891059 | 40891016 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40890868 | 40890908 | 40890868 | ID=MS.gene09127.t1.exon7;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40890868 | 40890908 | 40890868 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40890550 | 40890632 | 40890550 | ID=MS.gene09127.t1.exon8;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40890550 | 40890632 | 40890550 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40890354 | 40890445 | 40890354 | ID=MS.gene09127.t1.exon9;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40890354 | 40890445 | 40890354 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40890207 | 40890276 | 40890207 | ID=MS.gene09127.t1.exon10;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40890207 | 40890276 | 40890207 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40890068 | 40890109 | 40890068 | ID=MS.gene09127.t1.exon11;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40890068 | 40890109 | 40890068 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| chr4.1 | exon | 40888339 | 40888494 | 40888339 | ID=MS.gene09127.t1.exon12;Parent=MS.gene09127.t1 |
| chr4.1 | CDS | 40888339 | 40888494 | 40888339 | ID=cds.MS.gene09127.t1;Parent=MS.gene09127.t1 |
| Gene Sequence |
| Protein sequence |
