Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049765.t1 | RHN60647.1 | 96 | 227 | 9 | 0 | 1 | 227 | 43 | 269 | 3.00E-111 | 411.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049765.t1 | Q9FFB6 | 72.4 | 214 | 59 | 0 | 13 | 226 | 22 | 235 | 7.6e-79 | 295.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049765.t1 | G7JNA1 | 96.0 | 227 | 9 | 0 | 1 | 227 | 1 | 227 | 2.2e-111 | 411.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049765 | MS.gene004457 | PPI |
| MS.gene049765 | MS.gene002763 | PPI |
| MS.gene96207 | MS.gene049765 | PPI |
| MS.gene53701 | MS.gene049765 | PPI |
| MS.gene049765 | MS.gene54097 | PPI |
| MS.gene014764 | MS.gene049765 | PPI |
| MS.gene86321 | MS.gene049765 | PPI |
| MS.gene049765 | MS.gene46900 | PPI |
| MS.gene049765 | MS.gene00991 | PPI |
| MS.gene049765 | MS.gene000372 | PPI |
| MS.gene015919 | MS.gene049765 | PPI |
| MS.gene049765 | MS.gene46902 | PPI |
| MS.gene049765 | MS.gene072976 | PPI |
| MS.gene049765 | MS.gene41351 | PPI |
| MS.gene43374 | MS.gene049765 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049765.t1 | MTR_4g057310 | 93.966 | 232 | 12 | 1 | 1 | 232 | 1 | 230 | 3.82e-162 | 450 |
| MS.gene049765.t1 | MTR_4g057310 | 95.327 | 214 | 10 | 0 | 1 | 214 | 4 | 217 | 2.23e-152 | 423 |
| MS.gene049765.t1 | MTR_7g102990 | 71.233 | 219 | 61 | 1 | 14 | 232 | 20 | 236 | 5.34e-121 | 347 |
| MS.gene049765.t1 | MTR_3g108240 | 69.124 | 217 | 65 | 1 | 16 | 232 | 62 | 276 | 1.66e-114 | 330 |
| MS.gene049765.t1 | MTR_3g108240 | 64.935 | 231 | 79 | 1 | 2 | 232 | 46 | 274 | 4.21e-113 | 327 |
| MS.gene049765.t1 | MTR_1g047740 | 63.404 | 235 | 79 | 2 | 3 | 232 | 36 | 268 | 9.49e-113 | 326 |
| MS.gene049765.t1 | MTR_7g102990 | 74.286 | 175 | 45 | 0 | 14 | 188 | 20 | 194 | 3.57e-100 | 291 |
| MS.gene049765.t1 | MTR_2g020040 | 56.881 | 218 | 91 | 2 | 15 | 232 | 15 | 229 | 2.60e-94 | 278 |
| MS.gene049765.t1 | MTR_1g010150 | 66.071 | 168 | 57 | 0 | 59 | 226 | 1 | 168 | 2.32e-87 | 258 |
| MS.gene049765.t1 | MTR_8g104410 | 36.652 | 221 | 120 | 7 | 16 | 230 | 997 | 1203 | 2.22e-43 | 157 |
| MS.gene049765.t1 | MTR_8g104410 | 36.652 | 221 | 120 | 7 | 16 | 230 | 761 | 967 | 2.22e-43 | 156 |
| MS.gene049765.t1 | MTR_6g083900 | 38.462 | 221 | 117 | 7 | 16 | 230 | 986 | 1193 | 6.21e-43 | 155 |
| MS.gene049765.t1 | MTR_4g107440 | 37.104 | 221 | 119 | 8 | 16 | 230 | 1034 | 1240 | 2.83e-42 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049765.t1 | AT5G22920 | 70.233 | 215 | 64 | 0 | 12 | 226 | 21 | 235 | 4.36e-117 | 335 |
| MS.gene049765.t1 | AT5G22920 | 70.233 | 215 | 64 | 0 | 12 | 226 | 21 | 235 | 1.69e-116 | 335 |
| MS.gene049765.t1 | AT5G25560 | 64.455 | 211 | 75 | 0 | 16 | 226 | 61 | 271 | 4.39e-106 | 309 |
| MS.gene049765.t1 | AT5G25560 | 64.455 | 211 | 75 | 0 | 16 | 226 | 61 | 271 | 4.39e-106 | 309 |
| MS.gene049765.t1 | AT5G25560 | 64.455 | 211 | 75 | 0 | 16 | 226 | 61 | 271 | 4.39e-106 | 309 |
| MS.gene049765.t1 | AT5G25560 | 64.455 | 211 | 75 | 0 | 16 | 226 | 61 | 271 | 4.39e-106 | 309 |
| MS.gene049765.t1 | AT5G25560 | 61.538 | 221 | 75 | 1 | 16 | 226 | 61 | 281 | 4.09e-103 | 302 |
| MS.gene049765.t1 | AT5G25560 | 61.751 | 217 | 83 | 0 | 10 | 226 | 50 | 266 | 9.35e-103 | 300 |
| MS.gene049765.t1 | AT5G18650 | 58.716 | 218 | 87 | 2 | 15 | 232 | 15 | 229 | 3.56e-96 | 283 |
| MS.gene049765.t1 | AT3G62970 | 54.054 | 222 | 101 | 1 | 15 | 236 | 32 | 252 | 2.68e-91 | 270 |
| MS.gene049765.t1 | AT3G62970 | 56.459 | 209 | 90 | 1 | 16 | 224 | 33 | 240 | 2.78e-89 | 266 |
| MS.gene049765.t1 | AT3G62970 | 56.853 | 197 | 84 | 1 | 15 | 211 | 32 | 227 | 2.57e-85 | 254 |
| MS.gene049765.t1 | AT1G74770 | 42.661 | 218 | 106 | 7 | 16 | 228 | 1023 | 1226 | 2.59e-49 | 174 |
| MS.gene049765.t1 | AT1G18910 | 41.014 | 217 | 111 | 6 | 16 | 228 | 1018 | 1221 | 8.18e-45 | 160 |
| MS.gene049765.t1 | AT3G18290 | 39.631 | 217 | 111 | 8 | 16 | 226 | 1004 | 1206 | 2.59e-43 | 156 |
| MS.gene049765.t1 | AT1G74770 | 42.079 | 202 | 98 | 7 | 16 | 212 | 1023 | 1210 | 3.48e-43 | 156 |
Find 36 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACTCTTCTTCAAATTT+TGG | 0.067213 | 4.2:-46396801 | MS.gene049765:CDS |
| GTCTTTACCTCAAAGCAAAT+TGG | 0.252831 | 4.2:+46395242 | None:intergenic |
| TCCGCGTCATGAAGTTAAAA+AGG | 0.253066 | 4.2:-46396162 | MS.gene049765:intron |
| GAAACCATTGTGGTTTGATA+TGG | 0.357588 | 4.2:-46393928 | MS.gene049765:CDS |
| TGAAGAAGAGTGTGTATTAG+TGG | 0.365797 | 4.2:+46396809 | None:intergenic |
| TAACTGTCCAATTTGCTTTG+AGG | 0.373162 | 4.2:-46395249 | MS.gene049765:intron |
| GCACTGCCACAATGAATCTA+AGG | 0.442450 | 4.2:-46396593 | MS.gene049765:intron |
| ATCTTGTTCTGTGTCACATA+AGG | 0.475979 | 4.2:+46396045 | None:intergenic |
| GTGGAAGAACCTTGATGAAA+TGG | 0.478322 | 4.2:-46394894 | MS.gene049765:intron |
| CATAAACTGTGGAGTATGCT+TGG | 0.478676 | 4.2:-46395904 | MS.gene049765:CDS |
| GGAATATCATGACGATCATC+AGG | 0.490854 | 4.2:+46396182 | None:intergenic |
| GATAATAGAAAACGTGAGGA+TGG | 0.503321 | 4.2:-46393898 | MS.gene049765:CDS |
| TGATTCAGGCATTGGAGTTG+AGG | 0.511404 | 4.2:+46394768 | None:intergenic |
| ATGCCCCTCTTTGATTTCGA+CGG | 0.518083 | 4.2:+46395298 | None:intergenic |
| ATCTACATACCATTTCATCA+AGG | 0.543839 | 4.2:+46394885 | None:intergenic |
| ATAAACTGTGGAGTATGCTT+GGG | 0.564301 | 4.2:-46395903 | MS.gene049765:CDS |
| ATCATCAGGCTTAATCTCAT+CGG | 0.572291 | 4.2:+46396196 | None:intergenic |
| GTGATGAATGTGGCATCTGC+AGG | 0.575272 | 4.2:-46395715 | MS.gene049765:intron |
| AATAGAAAACGTGAGGATGG+TGG | 0.581424 | 4.2:-46393895 | MS.gene049765:CDS |
| TTAGTGGATTCATATGACTC+TGG | 0.593486 | 4.2:+46396825 | None:intergenic |
| TTAGATGCACACATTACAGA+AGG | 0.606395 | 4.2:-46396663 | MS.gene049765:intron |
| AAATGTATAGTGTGGCCACA+AGG | 0.611133 | 4.2:+46395082 | None:intergenic |
| GGATTCATATGACTCTGGCA+TGG | 0.620691 | 4.2:+46396830 | None:intergenic |
| GAAATCAGTGTCTTACCTTG+TGG | 0.632283 | 4.2:-46395097 | MS.gene049765:CDS |
| AAAAGATAATAGAAAACGTG+AGG | 0.633159 | 4.2:-46393902 | MS.gene049765:CDS |
| TATTCCGTCGAAATCAAAGA+GGG | 0.638194 | 4.2:-46395302 | MS.gene049765:CDS |
| CACACTCAAAATGTATAGTG+TGG | 0.642188 | 4.2:+46395074 | None:intergenic |
| TTCACCATATCAAACCACAA+TGG | 0.663266 | 4.2:+46393924 | None:intergenic |
| TTTGTACCTTAGATTCATTG+TGG | 0.668501 | 4.2:+46396587 | None:intergenic |
| CTATTCCGTCGAAATCAAAG+AGG | 0.676093 | 4.2:-46395303 | MS.gene049765:CDS |
| CAATACCACTGTGATGAATG+TGG | 0.682908 | 4.2:-46395725 | MS.gene049765:CDS |
| TCTGTGACATGTCAAGTGTG+TGG | 0.685455 | 4.2:-46394913 | MS.gene049765:CDS |
| CAACAGAACTGCATAAACTG+TGG | 0.699260 | 4.2:-46395915 | MS.gene049765:CDS |
| ATTCCGTCGAAATCAAAGAG+GGG | 0.736632 | 4.2:-46395301 | MS.gene049765:CDS |
| AGATGCCACATTCATCACAG+TGG | 0.779714 | 4.2:+46395720 | None:intergenic |
| GTATGTGAAAGAAACCATTG+TGG | 0.788192 | 4.2:-46393938 | MS.gene049765:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTCATGTAAAAATT+TGG | - | chr4.2:46394421-46394440 | MS.gene049765:intron | 10.0% |
| !! | ATCTAAATTGAAAAAAAATA+AGG | + | chr4.2:46394035-46394054 | None:intergenic | 10.0% |
| !!! | TGTGTATATATTTTATATAT+AGG | - | chr4.2:46394725-46394744 | MS.gene049765:intron | 10.0% |
| !! | TAACAAAAAATGTTATTGAT+CGG | + | chr4.2:46394222-46394241 | None:intergenic | 15.0% |
| !! | TTGATCATATGAAATTTAAA+AGG | + | chr4.2:46396291-46396310 | None:intergenic | 15.0% |
| !!! | AAACATGTATATTTTTGTTT+AGG | - | chr4.2:46395380-46395399 | MS.gene049765:intron | 15.0% |
| !!! | AATTATATTGTTTGTTTCTT+TGG | - | chr4.2:46394147-46394166 | MS.gene049765:intron | 15.0% |
| !!! | ATGATCTTTTTAATTTCATA+TGG | + | chr4.2:46396394-46396413 | None:intergenic | 15.0% |
| !!! | ATGGTTTTATAATAGAAAAA+TGG | - | chr4.2:46393983-46394002 | MS.gene049765:intron | 15.0% |
| !!! | ATTTTTTTTCTTTTTGATAG+TGG | + | chr4.2:46396632-46396651 | None:intergenic | 15.0% |
| !!! | CCAATTTTTTCAATTATTAT+CGG | + | chr4.2:46396076-46396095 | None:intergenic | 15.0% |
| !! | AAGCAATTAACATATGTTAA+CGG | + | chr4.2:46396357-46396376 | None:intergenic | 20.0% |
| !! | AATATATGTGTATCAAATGA+AGG | - | chr4.2:46395693-46395712 | MS.gene049765:intron | 20.0% |
| !! | ACAAATAATTGAAAGATTCT+AGG | + | chr4.2:46396587-46396606 | None:intergenic | 20.0% |
| !! | ACAACAAAATACAAAATTGA+AGG | + | chr4.2:46396521-46396502 | None:intergenic | 20.0% |
| !! | ATTGATTACATCATTGTATT+TGG | - | chr4.2:46395873-46395892 | MS.gene049765:CDS | 20.0% |
| !! | CCGATAATAATTGAAAAAAT+TGG | - | chr4.2:46396073-46396092 | MS.gene049765:intron | 20.0% |
| !! | TACAAAATTGAAATATCCTT+CGG | - | chr4.2:46396511-46396530 | MS.gene049765:intron | 20.0% |
| !! | TCAAAAATTTCATTACAACA+TGG | + | chr4.2:46394093-46394112 | None:intergenic | 20.0% |
| !! | TGAAAAGTTACAAATGAAAT+AGG | + | chr4.2:46394636-46394655 | None:intergenic | 20.0% |
| !! | TGAATCATACAAAAATAAGA+AGG | - | chr4.2:46395960-46395979 | MS.gene049765:intron | 20.0% |
| !! | TGTATTTGGACTAAATATAA+TGG | - | chr4.2:46395887-46395906 | MS.gene049765:CDS | 20.0% |
| !! | TGTTTCGATTAAATTACTTA+AGG | + | chr4.2:46396471-46396490 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTCTTTTAGTTC+AGG | - | chr4.2:46394908-46394927 | MS.gene049765:CDS | 20.0% |
| !!! | GTTTTATAATAGAAAAATGG+AGG | - | chr4.2:46393986-46394005 | MS.gene049765:intron | 20.0% |
| !!! | TATACACATTGATTCTTATA+TGG | + | chr4.2:46394713-46394732 | None:intergenic | 20.0% |
| !!! | TATATATAGGTATTGAATGT+AGG | - | chr4.2:46394738-46394757 | MS.gene049765:intron | 20.0% |
| !!! | TATTTTACAAAATTCACAGT+TGG | - | chr4.2:46394246-46394265 | MS.gene049765:intron | 20.0% |
| !!! | TATTTTTGTGTTGAAACTTT+TGG | - | chr4.2:46395913-46395932 | MS.gene049765:CDS | 20.0% |
| !!! | TCTTATATGGTTCATATTTT+AGG | + | chr4.2:46394700-46394719 | None:intergenic | 20.0% |
| !!! | TGTTTTGACTAAATTACTTA+CGG | - | chr4.2:46396207-46396226 | MS.gene049765:intron | 20.0% |
| !!! | TTCTTATTTTTGTATGATTC+AGG | + | chr4.2:46395961-46395980 | None:intergenic | 20.0% |
| ! | AAAAGATAATAGAAAACGTG+AGG | - | chr4.2:46396810-46396829 | MS.gene049765:CDS | 25.0% |
| ! | ACAAAATACAAAATTGAAGG+TGG | + | chr4.2:46396172-46396191 | None:intergenic | 25.0% |
| ! | ATACGTTACTATCAAATAGA+AGG | + | chr4.2:46396432-46396451 | None:intergenic | 25.0% |
| ! | ATATATACACTAATAGCAGT+TGG | + | chr4.2:46395501-46395520 | None:intergenic | 25.0% |
| ! | ATGTCGAATAGAAAATATTC+TGG | + | chr4.2:46395055-46395074 | None:intergenic | 25.0% |
| ! | CTAAATAACAGAAGAATAAG+AGG | + | chr4.2:46396561-46396580 | None:intergenic | 25.0% |
| ! | TATACATGTTTACAACAATC+AGG | + | chr4.2:46395371-46395390 | None:intergenic | 25.0% |
| ! | TGGAATATTGAAATGATGAT+TGG | + | chr4.2:46396152-46396171 | None:intergenic | 25.0% |
| ! | TTAACATATTGCTTTCTACA+AGG | + | chr4.2:46396315-46396334 | None:intergenic | 25.0% |
| !! | TCTGGAATTATCAAATTGAT+TGG | + | chr4.2:46395037-46395056 | None:intergenic | 25.0% |
| !! | TTTCATGAACTATAGTCTTA+TGG | - | chr4.2:46393964-46393983 | MS.gene049765:intron | 25.0% |
| !! | TTTTTCCATTGCAAAAAATG+CGG | - | chr4.2:46395145-46395164 | MS.gene049765:intron | 25.0% |
| !!! | GTAATGAAATTTTTGACTGT+AGG | - | chr4.2:46394097-46394116 | MS.gene049765:intron | 25.0% |
| AAGAGATGGAAAAACATCAT+AGG | - | chr4.2:46395664-46395683 | MS.gene049765:intron | 30.0% | |
| ACACACTACTATCAAATAGA+AGG | - | chr4.2:46396246-46396265 | MS.gene049765:intron | 30.0% | |
| AGACTCGTTAACTTAACATT+CGG | - | chr4.2:46394185-46394204 | MS.gene049765:intron | 30.0% | |
| AGTAAGACAGTAAACAAACA+AGG | + | chr4.2:46394609-46394628 | None:intergenic | 30.0% | |
| ATCATATAATTAGAGACCGA+AGG | + | chr4.2:46396530-46396549 | None:intergenic | 30.0% | |
| ATCTACATACCATTTCATCA+AGG | + | chr4.2:46395830-46395849 | None:intergenic | 30.0% | |
| ATGGAAAAACATCATAGGTA+AGG | - | chr4.2:46395669-46395688 | MS.gene049765:intron | 30.0% | |
| CAATACAATGTGCACAATTA+AGG | + | chr4.2:46394934-46394953 | None:intergenic | 30.0% | |
| CATGTAAAAATTTGGAGAAG+TGG | - | chr4.2:46394429-46394448 | MS.gene049765:intron | 30.0% | |
| CATTGTTAATCATTGAAGCA+CGG | - | chr4.2:46396028-46396047 | MS.gene049765:intron | 30.0% | |
| TTCATAGATAAAGAAAGCCT+TGG | + | chr4.2:46396007-46396026 | None:intergenic | 30.0% | |
| TTTGTACCTTAGATTCATTG+TGG | + | chr4.2:46394128-46394147 | None:intergenic | 30.0% | |
| ! | ACACACTCTTCTTCAAATTT+TGG | - | chr4.2:46393911-46393930 | MS.gene049765:CDS | 30.0% |
| ! | ATACTCTCTTTTGAACATTC+AGG | - | chr4.2:46395748-46395767 | MS.gene049765:intron | 30.0% |
| ! | ATGATGATGTAAGTTCTGTA+GGG | - | chr4.2:46394864-46394883 | MS.gene049765:intron | 30.0% |
| ! | CACACTCTTCTTCAAATTTT+GGG | - | chr4.2:46393912-46393931 | MS.gene049765:CDS | 30.0% |
| ! | TTTTTGTATGATTCAGGCAT+TGG | + | chr4.2:46395955-46395974 | None:intergenic | 30.0% |
| !! | TGAATGTTTTTCAATGTTGC+AGG | - | chr4.2:46394772-46394791 | MS.gene049765:CDS | 30.0% |
| !! | TTTCTTTGGTCTTCTTTTAG+CGG | - | chr4.2:46394161-46394180 | MS.gene049765:intron | 30.0% |
| !! | TTTTGAGTGTGTTAAAGAGA+TGG | - | chr4.2:46395650-46395669 | MS.gene049765:intron | 30.0% |
| !!! | TGGAGAGTGACTTATTTTTT+TGG | - | chr4.2:46396733-46396752 | MS.gene049765:intron | 30.0% |
| !!! | TTCTTTTTGATAGTGGTTGA+AGG | + | chr4.2:46396625-46396644 | None:intergenic | 30.0% |
| AATAAGTCACTCTCCAACTA+AGG | + | chr4.2:46396729-46396748 | None:intergenic | 35.0% | |
| AGATTCTCGCTATAAACCAT+TGG | - | chr4.2:46395204-46395223 | MS.gene049765:intron | 35.0% | |
| ATAAACTGTGGAGTATGCTT+GGG | - | chr4.2:46394809-46394828 | MS.gene049765:intron | 35.0% | |
| ATCATCAGGCTTAATCTCAT+CGG | + | chr4.2:46394519-46394538 | None:intergenic | 35.0% | |
| ATCTTGTTCTGTGTCACATA+AGG | + | chr4.2:46394670-46394689 | None:intergenic | 35.0% | |
| CACACTCAAAATGTATAGTG+TGG | + | chr4.2:46395641-46395660 | None:intergenic | 35.0% | |
| GAAACCATTGTGGTTTGATA+TGG | - | chr4.2:46396784-46396803 | MS.gene049765:intron | 35.0% | |
| GATAATAGAAAACGTGAGGA+TGG | - | chr4.2:46396814-46396833 | MS.gene049765:CDS | 35.0% | |
| GTATCAAACAGATACTGCAA+GGG | + | chr4.2:46395588-46395607 | None:intergenic | 35.0% | |
| GTATGTGAAAGAAACCATTG+TGG | - | chr4.2:46396774-46396793 | MS.gene049765:intron | 35.0% | |
| GTCTTTACCTCAAAGCAAAT+TGG | + | chr4.2:46395473-46395492 | None:intergenic | 35.0% | |
| TATTCCGTCGAAATCAAAGA+GGG | - | chr4.2:46395410-46395429 | MS.gene049765:intron | 35.0% | |
| TGTATCAAACAGATACTGCA+AGG | + | chr4.2:46395589-46395608 | None:intergenic | 35.0% | |
| TTAGATGCACACATTACAGA+AGG | - | chr4.2:46394049-46394068 | MS.gene049765:intron | 35.0% | |
| TTCACCATATCAAACCACAA+TGG | + | chr4.2:46396791-46396810 | None:intergenic | 35.0% | |
| TTTCTTCTGTGTACCTTAGT+TGG | - | chr4.2:46396713-46396732 | MS.gene049765:intron | 35.0% | |
| ! | CAGATAGATTTTGAGCAAAC+AGG | + | chr4.2:46395783-46395802 | None:intergenic | 35.0% |
| ! | GATGATGATGTAAGTTCTGT+AGG | - | chr4.2:46394863-46394882 | MS.gene049765:intron | 35.0% |
| ! | TAACTGTCCAATTTGCTTTG+AGG | - | chr4.2:46395463-46395482 | MS.gene049765:intron | 35.0% |
| ! | TGAAGAAGAGTGTGTATTAG+TGG | + | chr4.2:46393906-46393925 | None:intergenic | 35.0% |
| !! | AATTGCTTTTACAGAACTGG+TGG | - | chr4.2:46395112-46395131 | MS.gene049765:CDS | 35.0% |
| !! | ACACTAATAGCAGTTGGTTT+TGG | + | chr4.2:46395495-46395514 | None:intergenic | 35.0% |
| !! | CGTAATTGCTTTTACAGAAC+TGG | - | chr4.2:46395109-46395128 | MS.gene049765:CDS | 35.0% |
| !! | TTAGTGGATTCATATGACTC+TGG | + | chr4.2:46393890-46393909 | None:intergenic | 35.0% |
| !!! | ACCTTTTTAACTTCATGACG+CGG | + | chr4.2:46394554-46394573 | None:intergenic | 35.0% |
| !!! | TTTTTGATAGTGGTTGAAGG+AGG | + | chr4.2:46396622-46396641 | None:intergenic | 35.0% |
| AAATGTATAGTGTGGCCACA+AGG | + | chr4.2:46395633-46395652 | None:intergenic | 40.0% | |
| AATAGAAAACGTGAGGATGG+TGG | - | chr4.2:46396817-46396836 | MS.gene049765:CDS | 40.0% | |
| ATTCCGTCGAAATCAAAGAG+GGG | - | chr4.2:46395411-46395430 | MS.gene049765:intron | 40.0% | |
| CAACAGAACTGCATAAACTG+TGG | - | chr4.2:46394797-46394816 | MS.gene049765:intron | 40.0% | |
| CAATACCACTGTGATGAATG+TGG | - | chr4.2:46394987-46395006 | MS.gene049765:intron | 40.0% | |
| CATAAACTGTGGAGTATGCT+TGG | - | chr4.2:46394808-46394827 | MS.gene049765:intron | 40.0% | |
| CTATTCCGTCGAAATCAAAG+AGG | - | chr4.2:46395409-46395428 | MS.gene049765:intron | 40.0% | |
| GAAATCAGTGTCTTACCTTG+TGG | - | chr4.2:46395615-46395634 | MS.gene049765:intron | 40.0% | |
| GGAATATCATGACGATCATC+AGG | + | chr4.2:46394533-46394552 | None:intergenic | 40.0% | |
| GGTTTCTTTCACATACACAG+AGG | + | chr4.2:46396770-46396789 | None:intergenic | 40.0% | |
| GTGGAAGAACCTTGATGAAA+TGG | - | chr4.2:46395818-46395837 | MS.gene049765:intron | 40.0% | |
| TCCGCGTCATGAAGTTAAAA+AGG | - | chr4.2:46394550-46394569 | MS.gene049765:intron | 40.0% | |
| !! | ATCAGATGAAGCACTGAATC+AGG | + | chr4.2:46396686-46396705 | None:intergenic | 40.0% |
| !!! | ACTCACCGCATTTTTTGCAA+TGG | + | chr4.2:46395153-46395172 | None:intergenic | 40.0% |
| AGATGCCACATTCATCACAG+TGG | + | chr4.2:46394995-46395014 | None:intergenic | 45.0% | |
| AGATGTTTGTGCAGTGCCAA+TGG | + | chr4.2:46395223-46395242 | None:intergenic | 45.0% | |
| GATAAAGAAAGCCTTGGAGC+TGG | + | chr4.2:46396001-46396020 | None:intergenic | 45.0% | |
| GCACTGCCACAATGAATCTA+AGG | - | chr4.2:46394119-46394138 | MS.gene049765:intron | 45.0% | |
| TCTGTGACATGTCAAGTGTG+TGG | - | chr4.2:46395799-46395818 | MS.gene049765:intron | 45.0% | |
| TTACAACAACTCCAGCTCCA+AGG | - | chr4.2:46395987-46396006 | MS.gene049765:intron | 45.0% | |
| ! | ATGCCCCTCTTTGATTTCGA+CGG | + | chr4.2:46395417-46395436 | None:intergenic | 45.0% |
| !! | TGATTCAGGCATTGGAGTTG+AGG | + | chr4.2:46395947-46395966 | None:intergenic | 45.0% |
| GTGATGAATGTGGCATCTGC+AGG | - | chr4.2:46394997-46395016 | MS.gene049765:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 46393884 | 46396850 | 46393884 | ID=MS.gene049765 |
| chr4.2 | mRNA | 46393884 | 46396850 | 46393884 | ID=MS.gene049765.t1;Parent=MS.gene049765 |
| chr4.2 | exon | 46396801 | 46396850 | 46396801 | ID=MS.gene049765.t1.exon1;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46396801 | 46396850 | 46396801 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46396594 | 46396681 | 46396594 | ID=MS.gene049765.t1.exon2;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46396594 | 46396681 | 46396594 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46396163 | 46396222 | 46396163 | ID=MS.gene049765.t1.exon3;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46396163 | 46396222 | 46396163 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46396045 | 46396077 | 46396045 | ID=MS.gene049765.t1.exon4;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46396045 | 46396077 | 46396045 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46395863 | 46395940 | 46395863 | ID=MS.gene049765.t1.exon5;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46395863 | 46395940 | 46395863 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46395716 | 46395759 | 46395716 | ID=MS.gene049765.t1.exon6;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46395716 | 46395759 | 46395716 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46395568 | 46395608 | 46395568 | ID=MS.gene049765.t1.exon7;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46395568 | 46395608 | 46395568 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46395250 | 46395332 | 46395250 | ID=MS.gene049765.t1.exon8;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46395250 | 46395332 | 46395250 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46395049 | 46395140 | 46395049 | ID=MS.gene049765.t1.exon9;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46395049 | 46395140 | 46395049 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46394895 | 46394964 | 46394895 | ID=MS.gene049765.t1.exon10;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46394895 | 46394964 | 46394895 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46394753 | 46394794 | 46394753 | ID=MS.gene049765.t1.exon11;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46394753 | 46394794 | 46394753 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| chr4.2 | exon | 46393884 | 46393949 | 46393884 | ID=MS.gene049765.t1.exon12;Parent=MS.gene049765.t1 |
| chr4.2 | CDS | 46393884 | 46393949 | 46393884 | ID=cds.MS.gene049765.t1;Parent=MS.gene049765.t1 |
| Gene Sequence |
| Protein sequence |
