Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007740.t1 | RHN60647.1 | 97.2 | 281 | 8 | 0 | 1 | 281 | 40 | 320 | 8.10E-145 | 523.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007740.t1 | Q9FFB6 | 70.7 | 266 | 77 | 1 | 16 | 280 | 22 | 287 | 4.0e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007740.t1 | A0A396ICV1 | 97.2 | 281 | 8 | 0 | 1 | 281 | 40 | 320 | 5.8e-145 | 523.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007740 | MS.gene54097 | PPI |
| MS.gene014764 | MS.gene007740 | PPI |
| MS.gene015919 | MS.gene007740 | PPI |
| MS.gene007740 | MS.gene86321 | PPI |
| MS.gene007740 | MS.gene46900 | PPI |
| MS.gene007740 | MS.gene00991 | PPI |
| MS.gene007740 | MS.gene000372 | PPI |
| MS.gene007740 | MS.gene072976 | PPI |
| MS.gene96207 | MS.gene007740 | PPI |
| MS.gene007740 | MS.gene41351 | PPI |
| MS.gene43374 | MS.gene007740 | PPI |
| MS.gene007740 | MS.gene46902 | PPI |
| MS.gene007740 | MS.gene004457 | PPI |
| MS.gene53701 | MS.gene007740 | PPI |
| MS.gene007740 | MS.gene002763 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007740.t1 | MTR_4g057310 | 96.763 | 278 | 9 | 0 | 4 | 281 | 1 | 278 | 0.0 | 550 |
| MS.gene007740.t1 | MTR_4g057310 | 97.235 | 217 | 6 | 0 | 1 | 217 | 1 | 217 | 1.78e-156 | 435 |
| MS.gene007740.t1 | MTR_7g102990 | 70.342 | 263 | 75 | 1 | 17 | 279 | 20 | 279 | 1.26e-144 | 408 |
| MS.gene007740.t1 | MTR_3g108240 | 71.774 | 248 | 70 | 0 | 19 | 266 | 62 | 309 | 9.44e-138 | 391 |
| MS.gene007740.t1 | MTR_3g108240 | 67.939 | 262 | 84 | 0 | 5 | 266 | 46 | 307 | 1.45e-136 | 388 |
| MS.gene007740.t1 | MTR_1g047740 | 64.103 | 273 | 91 | 2 | 1 | 266 | 29 | 301 | 2.98e-134 | 382 |
| MS.gene007740.t1 | MTR_2g020040 | 58.300 | 247 | 102 | 1 | 18 | 264 | 15 | 260 | 9.66e-112 | 323 |
| MS.gene007740.t1 | MTR_1g010150 | 66.829 | 205 | 68 | 0 | 62 | 266 | 1 | 205 | 8.52e-109 | 313 |
| MS.gene007740.t1 | MTR_7g102990 | 72.000 | 175 | 49 | 0 | 17 | 191 | 20 | 194 | 3.47e-98 | 287 |
| MS.gene007740.t1 | MTR_8g104410 | 39.464 | 261 | 138 | 7 | 19 | 273 | 761 | 1007 | 1.10e-55 | 193 |
| MS.gene007740.t1 | MTR_8g104410 | 39.464 | 261 | 138 | 7 | 19 | 273 | 997 | 1243 | 1.50e-55 | 193 |
| MS.gene007740.t1 | MTR_6g083900 | 40.541 | 259 | 135 | 8 | 19 | 271 | 986 | 1231 | 1.90e-52 | 184 |
| MS.gene007740.t1 | MTR_4g107440 | 39.683 | 252 | 132 | 8 | 19 | 264 | 1034 | 1271 | 5.35e-52 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007740.t1 | AT5G22920 | 68.914 | 267 | 82 | 1 | 15 | 280 | 21 | 287 | 8.74e-142 | 400 |
| MS.gene007740.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 5.30e-125 | 358 |
| MS.gene007740.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 5.30e-125 | 358 |
| MS.gene007740.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 5.30e-125 | 358 |
| MS.gene007740.t1 | AT5G25560 | 64.516 | 248 | 88 | 0 | 19 | 266 | 61 | 308 | 5.30e-125 | 358 |
| MS.gene007740.t1 | AT5G25560 | 62.016 | 258 | 88 | 1 | 19 | 266 | 61 | 318 | 5.15e-122 | 351 |
| MS.gene007740.t1 | AT5G25560 | 60.227 | 264 | 105 | 0 | 3 | 266 | 40 | 303 | 5.45e-122 | 351 |
| MS.gene007740.t1 | AT5G22920 | 70.507 | 217 | 64 | 0 | 15 | 231 | 21 | 237 | 1.33e-117 | 337 |
| MS.gene007740.t1 | AT5G18650 | 58.704 | 247 | 101 | 1 | 18 | 264 | 15 | 260 | 1.39e-111 | 323 |
| MS.gene007740.t1 | AT3G62970 | 55.285 | 246 | 108 | 2 | 19 | 264 | 33 | 276 | 2.05e-102 | 300 |
| MS.gene007740.t1 | AT3G62970 | 54.460 | 213 | 96 | 1 | 19 | 231 | 33 | 244 | 3.06e-89 | 266 |
| MS.gene007740.t1 | AT3G62970 | 55.330 | 197 | 87 | 1 | 18 | 214 | 32 | 227 | 5.92e-84 | 252 |
| MS.gene007740.t1 | AT1G74770 | 42.007 | 269 | 137 | 7 | 1 | 264 | 1005 | 1259 | 8.62e-61 | 208 |
| MS.gene007740.t1 | AT1G18910 | 42.742 | 248 | 125 | 6 | 19 | 262 | 1018 | 1252 | 6.89e-56 | 194 |
| MS.gene007740.t1 | AT3G18290 | 39.921 | 253 | 132 | 7 | 19 | 265 | 1004 | 1242 | 1.75e-53 | 187 |
| MS.gene007740.t1 | AT1G74770 | 41.706 | 211 | 104 | 7 | 1 | 206 | 1005 | 1201 | 9.24e-43 | 156 |
Find 42 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACTCTTCTTCAAATTT+TGG | 0.067213 | 4.4:-45960692 | MS.gene007740:CDS |
| TTGTATTTGCCTTGTGTTGT+AGG | 0.202677 | 4.4:+45956962 | None:intergenic |
| TCCGCGTCATGAAGTTAAAA+AGG | 0.253066 | 4.4:-45960053 | MS.gene007740:intron |
| TGAAGAAGAGTGTGTATTAG+TGG | 0.365797 | 4.4:+45960700 | None:intergenic |
| TAATTGTCCTATTTGCTTTG+AGG | 0.369079 | 4.4:-45959141 | MS.gene007740:intron |
| GTCTTTACCTCAAAGCAAAT+AGG | 0.376646 | 4.4:+45959134 | None:intergenic |
| CTTCTAGCTCATGCTCGTCT+AGG | 0.428953 | 4.4:-45956932 | MS.gene007740:CDS |
| ATCTTGTTCTGTGTCACATA+AGG | 0.473360 | 4.4:+45959936 | None:intergenic |
| GTGGAAGAACCTTGATGAAA+TGG | 0.478322 | 4.4:-45958788 | MS.gene007740:intron |
| CATAAACTGTGGAGTATGCT+TGG | 0.478676 | 4.4:-45959796 | MS.gene007740:CDS |
| TTCTAGCTCATGCTCGTCTA+GGG | 0.485699 | 4.4:-45956931 | MS.gene007740:CDS |
| GGAATATCATGACGATCATC+AGG | 0.490854 | 4.4:+45960073 | None:intergenic |
| CTAGACGAGCATGAGCTAGA+AGG | 0.504224 | 4.4:+45956933 | None:intergenic |
| TGATTCAGGCATTGGAGTTG+AGG | 0.511404 | 4.4:+45958662 | None:intergenic |
| ATGCCCCTCTTTGATTTCGA+CGG | 0.518083 | 4.4:+45959190 | None:intergenic |
| CTTTGAATGTGTTAAAGAGA+TGG | 0.519734 | 4.4:-45958956 | MS.gene007740:CDS |
| ATCTACATACCATTTCATCA+AGG | 0.543839 | 4.4:+45958779 | None:intergenic |
| ATAAACTGTGGAGTATGCTT+GGG | 0.564301 | 4.4:-45959795 | MS.gene007740:CDS |
| ATCATCAGGCTTAATCTCAT+CGG | 0.572291 | 4.4:+45960087 | None:intergenic |
| GTGATGAATGTGGCATCTGC+AGG | 0.575272 | 4.4:-45959607 | MS.gene007740:intron |
| TTAGTGGATTCATATGACTC+TGG | 0.593486 | 4.4:+45960716 | None:intergenic |
| TACAACACAAGGCAAATACA+AGG | 0.597559 | 4.4:-45956960 | MS.gene007740:CDS |
| TGGATACTGTGCAATGATTG+TGG | 0.602861 | 4.4:-45957041 | MS.gene007740:CDS |
| CCACAATGTGGAATTGCACA+TGG | 0.603156 | 4.4:+45957009 | None:intergenic |
| GCACTGCCACAATGAAGCTA+AGG | 0.605639 | 4.4:-45960484 | MS.gene007740:intron |
| TTAGATGCACACATTACAGA+AGG | 0.606395 | 4.4:-45960554 | MS.gene007740:intron |
| AACACTTATGTGCCACAATG+TGG | 0.611474 | 4.4:+45956997 | None:intergenic |
| GGATTCATATGACTCTGGCA+TGG | 0.620691 | 4.4:+45960721 | None:intergenic |
| AAGTGTATAGTGTGGCCACA+AGG | 0.625437 | 4.4:+45958976 | None:intergenic |
| GAAATCAGTGTCTTACCTTG+TGG | 0.632283 | 4.4:-45958991 | MS.gene007740:CDS |
| TATTCCGTCGAAATCAAAGA+GGG | 0.638194 | 4.4:-45959194 | MS.gene007740:CDS |
| CACATTCAAAGTGTATAGTG+TGG | 0.648884 | 4.4:+45958968 | None:intergenic |
| CTATTCCGTCGAAATCAAAG+AGG | 0.676093 | 4.4:-45959195 | MS.gene007740:CDS |
| CCATGTGCAATTCCACATTG+TGG | 0.678652 | 4.4:-45957009 | MS.gene007740:CDS |
| TTTGTACCTTAGCTTCATTG+TGG | 0.682807 | 4.4:+45960478 | None:intergenic |
| CAATACCACTGTGATGAATG+TGG | 0.682908 | 4.4:-45959617 | MS.gene007740:CDS |
| GTTGCAACTCCTACAACACA+AGG | 0.691870 | 4.4:-45956971 | MS.gene007740:CDS |
| CACAATGTGGAATTGCACAT+GGG | 0.692219 | 4.4:+45957010 | None:intergenic |
| CAACAGAACTGCATAAACTG+TGG | 0.699260 | 4.4:-45959807 | MS.gene007740:CDS |
| TCTGTGATATGTCAAGTGTG+TGG | 0.700300 | 4.4:-45958807 | MS.gene007740:CDS |
| ATTCCGTCGAAATCAAAGAG+GGG | 0.736632 | 4.4:-45959193 | MS.gene007740:CDS |
| AGATGCCACATTCATCACAG+TGG | 0.779714 | 4.4:+45959612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAATTGAAAAAAAATA+AGG | + | chr4.4:45957071-45957090 | None:intergenic | 10.0% |
| !! | CAAATTTCTTAAATTATTAT+CGG | + | chr4.4:45959109-45959128 | None:intergenic | 10.0% |
| !! | TTGATCATATAAAATTAAAA+AGG | - | chr4.4:45959426-45959445 | MS.gene007740:intron | 10.0% |
| !!! | TGTGTATATATTTTATATAT+AGG | - | chr4.4:45957760-45957779 | MS.gene007740:intron | 10.0% |
| !! | AAATAATTCGTGTAAAAATT+TGG | - | chr4.4:45957457-45957476 | MS.gene007740:intron | 15.0% |
| !! | TAACAAAAAATGTTATTGAT+CGG | + | chr4.4:45957258-45957277 | None:intergenic | 15.0% |
| !!! | AAACATGTATATTTTTGTTT+AGG | - | chr4.4:45958415-45958434 | MS.gene007740:intron | 15.0% |
| !!! | ATATACACATTGATTATTAA+TGG | + | chr4.4:45957749-45957768 | None:intergenic | 15.0% |
| !!! | ATGGTTTTATAATAGAAAAA+TGG | - | chr4.4:45957019-45957038 | MS.gene007740:CDS | 15.0% |
| !!! | TATTTTACAAAATTCACAAT+TGG | - | chr4.4:45957282-45957301 | MS.gene007740:intron | 15.0% |
| !!! | TGTTTTGATTAAATTACTTA+AGG | + | chr4.4:45959510-45959529 | None:intergenic | 15.0% |
| !! | AATTATATTGTTTGTTTCGT+TGG | - | chr4.4:45957183-45957202 | MS.gene007740:intron | 20.0% |
| !! | ATATATATACTAATAGCAGT+TGG | + | chr4.4:45958536-45958555 | None:intergenic | 20.0% |
| !! | ATTGATTACATCATTGTATT+TGG | - | chr4.4:45958906-45958925 | MS.gene007740:intron | 20.0% |
| !! | TACATAATTGAAATATCCTT+CGG | - | chr4.4:45959549-45959568 | MS.gene007740:intron | 20.0% |
| !! | TATCAAAAAGAAACAAAATG+TGG | - | chr4.4:45959662-45959681 | MS.gene007740:intron | 20.0% |
| !! | TCAAAAATTTCATTACAACA+TGG | + | chr4.4:45957129-45957148 | None:intergenic | 20.0% |
| !! | TGAAAAGTTACAAATGAAAT+AGG | + | chr4.4:45957672-45957691 | None:intergenic | 20.0% |
| !! | TGAAATATTGAAATGATGAT+TGG | - | chr4.4:45960423-45960442 | MS.gene007740:intron | 20.0% |
| !! | TGAATCATACAAAAATAAGA+AGG | - | chr4.4:45958993-45959012 | MS.gene007740:CDS | 20.0% |
| !! | TGTATTTGGACTAAATATAA+TGG | - | chr4.4:45958920-45958939 | MS.gene007740:intron | 20.0% |
| !! | TTGACCATATGAAATTAAAA+AGG | + | chr4.4:45959323-45959342 | None:intergenic | 20.0% |
| !!! | ATGACCTTTTTAATTTCATA+TGG | - | chr4.4:45959316-45959335 | MS.gene007740:intron | 20.0% |
| !!! | ATTTTTGTTTCTTTTAGTTC+AGG | - | chr4.4:45957943-45957962 | MS.gene007740:intron | 20.0% |
| !!! | GTGATCTTATTTTGTTTTTA+AGG | - | chr4.4:45960475-45960494 | MS.gene007740:intron | 20.0% |
| !!! | GTTTTATAATAGAAAAATGG+AGG | - | chr4.4:45957022-45957041 | MS.gene007740:CDS | 20.0% |
| !!! | TATATATAGGTATTGAATGT+AGG | - | chr4.4:45957773-45957792 | MS.gene007740:intron | 20.0% |
| !!! | TATTTTTGTGTTGAAACTTT+TGG | - | chr4.4:45958946-45958965 | MS.gene007740:CDS | 20.0% |
| !!! | TTCTTATTTTTGTATGATTC+AGG | + | chr4.4:45958994-45959013 | None:intergenic | 20.0% |
| !!! | TTTTTTACACAAACAATTGA+AGG | - | chr4.4:45960338-45960357 | MS.gene007740:intron | 20.0% |
| ! | AAAAGATAATAGAAAACGTG+AGG | - | chr4.4:45959843-45959862 | MS.gene007740:intron | 25.0% |
| ! | AAAATATGTGTACCAAATGA+AGG | - | chr4.4:45958726-45958745 | MS.gene007740:intron | 25.0% |
| ! | ACAACGAAATACAAAATTGA+AGG | + | chr4.4:45959208-45959227 | None:intergenic | 25.0% |
| ! | AGCAATTAGCATATGTTAAT+TGG | + | chr4.4:45959395-45959414 | None:intergenic | 25.0% |
| ! | ATACGCTACTATCAAATAAA+AGG | + | chr4.4:45959471-45959490 | None:intergenic | 25.0% |
| ! | ATGTCGAATAGAAAATATTC+TGG | + | chr4.4:45958090-45958109 | None:intergenic | 25.0% |
| ! | CTAAATAACAGAAGAATATG+AGG | + | chr4.4:45959599-45959618 | None:intergenic | 25.0% |
| ! | TAAAAAATCATTCCGACTAA+AGG | - | chr4.4:45960223-45960242 | MS.gene007740:intron | 25.0% |
| ! | TAACATTTCAATCCTTCATT+TGG | + | chr4.4:45958741-45958760 | None:intergenic | 25.0% |
| ! | TATACATGTTTACAACAATC+AGG | + | chr4.4:45958406-45958425 | None:intergenic | 25.0% |
| ! | TGAAGATTTATATACTGTGT+TGG | - | chr4.4:45960518-45960537 | MS.gene007740:CDS | 25.0% |
| ! | TGGAATATTGAAATGATGAT+TGG | + | chr4.4:45959185-45959204 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCTTCTTTGTAG+TGG | - | chr4.4:45960300-45960319 | MS.gene007740:intron | 25.0% |
| !! | TATGCTAATTGTCTTTTACA+AGG | + | chr4.4:45959347-45959366 | None:intergenic | 25.0% |
| !! | TCTGGAATTATCAAATAGAT+TGG | + | chr4.4:45958072-45958091 | None:intergenic | 25.0% |
| !! | TTTCATGAACTATAGTCTTA+TGG | - | chr4.4:45957000-45957019 | MS.gene007740:CDS | 25.0% |
| !! | TTTTTCCATTGCAAAAAATG+CGG | - | chr4.4:45958180-45958199 | MS.gene007740:intron | 25.0% |
| !!! | GTAATGAAATTTTTGACTGT+AGG | - | chr4.4:45957133-45957152 | MS.gene007740:intron | 25.0% |
| !!! | TGAATATTTTTCAATGTTGC+AGG | - | chr4.4:45957807-45957826 | MS.gene007740:intron | 25.0% |
| AAAGTATAATCGAAAACGTG+AGG | + | chr4.4:45960149-45960168 | None:intergenic | 30.0% | |
| AAGAGATGGAAAAACATCAT+AGG | - | chr4.4:45958697-45958716 | MS.gene007740:intron | 30.0% | |
| ACGAAATACAAAATTGAAGG+TGG | + | chr4.4:45959205-45959224 | None:intergenic | 30.0% | |
| AGACTCGTTAACTTAACATT+CGG | - | chr4.4:45957221-45957240 | MS.gene007740:intron | 30.0% | |
| ATCATATAATTAGAGACCGA+AGG | + | chr4.4:45959568-45959587 | None:intergenic | 30.0% | |
| ATCATATAGTTAGCGACTAA+AGG | - | chr4.4:45960392-45960411 | MS.gene007740:intron | 30.0% | |
| ATCTACATACCATTTCATCA+AGG | + | chr4.4:45958863-45958882 | None:intergenic | 30.0% | |
| ATGGAAAAACATCATAGGTA+AGG | - | chr4.4:45958702-45958721 | MS.gene007740:intron | 30.0% | |
| CAATACAATGTGCACAATTA+AGG | + | chr4.4:45957969-45957988 | None:intergenic | 30.0% | |
| CATTGTTAATCATTGAAGCA+CGG | - | chr4.4:45959061-45959080 | MS.gene007740:intron | 30.0% | |
| CTTTGAATGTGTTAAAGAGA+TGG | - | chr4.4:45958683-45958702 | MS.gene007740:intron | 30.0% | |
| TAATTGTCCTATTTGCTTTG+AGG | - | chr4.4:45958498-45958517 | MS.gene007740:intron | 30.0% | |
| TATCAATGACAAGGAAATGT+TGG | + | chr4.4:45960052-45960071 | None:intergenic | 30.0% | |
| TTCATAGATAAAGAAAGCCT+TGG | + | chr4.4:45959040-45959059 | None:intergenic | 30.0% | |
| ! | ACACACTCTTCTTCAAATTT+TGG | - | chr4.4:45956947-45956966 | MS.gene007740:CDS | 30.0% |
| ! | ATACTCTCTTTTGAACATTC+AGG | - | chr4.4:45958781-45958800 | MS.gene007740:intron | 30.0% |
| ! | ATGATGATGTAAGTTCTGTA+GGG | - | chr4.4:45957899-45957918 | MS.gene007740:intron | 30.0% |
| ! | CACACTCTTCTTCAAATTTT+GGG | - | chr4.4:45956948-45956967 | MS.gene007740:CDS | 30.0% |
| ! | TTTTGCCTTTACCAATTACA+AGG | - | chr4.4:45959929-45959948 | MS.gene007740:intron | 30.0% |
| ! | TTTTTGTATGATTCAGGCAT+TGG | + | chr4.4:45958988-45959007 | None:intergenic | 30.0% |
| !! | ATACTAATAGCAGTTGGTTT+TGG | + | chr4.4:45958530-45958549 | None:intergenic | 30.0% |
| !! | TTCTTTTTGATAGCAGTTGA+AGG | + | chr4.4:45959654-45959673 | None:intergenic | 30.0% |
| !!! | GTGTTTTGACGAATTACTTA+AGG | - | chr4.4:45959239-45959258 | MS.gene007740:intron | 30.0% |
| !!! | TGGAGAGAGACTTATTTTTT+TGG | - | chr4.4:45959766-45959785 | MS.gene007740:CDS | 30.0% |
| AATAAGTCTCTCTCCAACTA+AGG | + | chr4.4:45959762-45959781 | None:intergenic | 35.0% | |
| AGATTCTCGCTATAAACCAT+TGG | - | chr4.4:45958239-45958258 | MS.gene007740:intron | 35.0% | |
| AGTAAGACAGTGAACAAACA+AGG | + | chr4.4:45957645-45957664 | None:intergenic | 35.0% | |
| AGTGACACATTTCTAACTAG+TGG | - | chr4.4:45960555-45960574 | MS.gene007740:intron | 35.0% | |
| ATAAACTGTGGAGTATGCTT+GGG | - | chr4.4:45957844-45957863 | MS.gene007740:intron | 35.0% | |
| ATCAGACGAAACACTAAATC+AGG | + | chr4.4:45959719-45959738 | None:intergenic | 35.0% | |
| ATCATCAGGCTTAATCTCAT+CGG | + | chr4.4:45957555-45957574 | None:intergenic | 35.0% | |
| ATCTTGTTCTGTGTCACATA+AGG | + | chr4.4:45957706-45957725 | None:intergenic | 35.0% | |
| CACATTCAAAGTGTATAGTG+TGG | + | chr4.4:45958674-45958693 | None:intergenic | 35.0% | |
| CACTTCCTTGTAATTGGTAA+AGG | + | chr4.4:45959937-45959956 | None:intergenic | 35.0% | |
| CGTGTAAAAATTTGGAGAAG+TGG | - | chr4.4:45957465-45957484 | MS.gene007740:intron | 35.0% | |
| GAAACCATTGTGGTTTGATA+TGG | - | chr4.4:45959817-45959836 | MS.gene007740:intron | 35.0% | |
| GAAACCATTGTGGTTTGATA+TGG | + | chr4.4:45959836-45959817 | None:intergenic | 35.0% | |
| GATAATAGAAAACGTGAGGA+TGG | - | chr4.4:45959847-45959866 | MS.gene007740:intron | 35.0% | |
| GTATCAAACAGATACTGCAA+GGG | + | chr4.4:45958621-45958640 | None:intergenic | 35.0% | |
| GTATGTGAAAGAAACCATTG+TGG | - | chr4.4:45959807-45959826 | MS.gene007740:CDS | 35.0% | |
| GTCTTTACCTCAAAGCAAAT+AGG | + | chr4.4:45958508-45958527 | None:intergenic | 35.0% | |
| TACAACACAAGGCAAATACA+AGG | - | chr4.4:45960679-45960698 | MS.gene007740:intron | 35.0% | |
| TACTTGTATGAAAGCAGGTA+TGG | - | chr4.4:45960578-45960597 | MS.gene007740:intron | 35.0% | |
| TATTCCGTCGAAATCAAAGA+GGG | - | chr4.4:45958445-45958464 | MS.gene007740:intron | 35.0% | |
| TCATGATCACGATCATGTAT+TGG | + | chr4.4:45960014-45960033 | None:intergenic | 35.0% | |
| TGATTGTTTGCTCCTTTAGT+CGG | + | chr4.4:45960238-45960257 | None:intergenic | 35.0% | |
| TGTATCAAACAGATACTGCA+AGG | + | chr4.4:45958622-45958641 | None:intergenic | 35.0% | |
| TTAGATGCACACATTACAGA+AGG | - | chr4.4:45957085-45957104 | MS.gene007740:intron | 35.0% | |
| TTCACCATATCAAACCACAA+TGG | - | chr4.4:45960168-45960187 | MS.gene007740:intron | 35.0% | |
| TTCACCATATCAAACCACAA+TGG | + | chr4.4:45960187-45960168 | None:intergenic | 35.0% | |
| TTCTTCTTTGTAGTGGTTGA+AGG | - | chr4.4:45960307-45960326 | MS.gene007740:intron | 35.0% | |
| TTGTATTTGCCTTGTGTTGT+AGG | + | chr4.4:45960680-45960699 | None:intergenic | 35.0% | |
| TTTCTTCTGTGTACCTTAGT+TGG | - | chr4.4:45959746-45959765 | MS.gene007740:intron | 35.0% | |
| TTTGTACCTTAGCTTCATTG+TGG | + | chr4.4:45957164-45957183 | None:intergenic | 35.0% | |
| ! | CAGATAGATTTTGAGCAAAC+AGG | + | chr4.4:45958816-45958835 | None:intergenic | 35.0% |
| ! | GATGATGATGTAAGTTCTGT+AGG | - | chr4.4:45957898-45957917 | MS.gene007740:intron | 35.0% |
| ! | TACCAATTACAAGGAAGTGT+TGG | - | chr4.4:45959938-45959957 | MS.gene007740:CDS | 35.0% |
| ! | TGAAGAAGAGTGTGTATTAG+TGG | + | chr4.4:45956942-45956961 | None:intergenic | 35.0% |
| !! | AATTGCTTTTACAGAACTGG+TGG | - | chr4.4:45958147-45958166 | MS.gene007740:intron | 35.0% |
| !! | CGTAATTGCTTTTACAGAAC+TGG | - | chr4.4:45958144-45958163 | MS.gene007740:intron | 35.0% |
| !! | CTTTGGCTTTATCAATGACA+AGG | + | chr4.4:45960061-45960080 | None:intergenic | 35.0% |
| !! | TTAGTGGATTCATATGACTC+TGG | + | chr4.4:45956926-45956945 | None:intergenic | 35.0% |
| !! | TTTTTGATAGCAGTTGAAGG+AGG | + | chr4.4:45959651-45959670 | None:intergenic | 35.0% |
| !!! | ACCTTTTTAACTTCATGACG+CGG | + | chr4.4:45957590-45957609 | None:intergenic | 35.0% |
| !!! | TTTCGTTGGTCTTCTTTTAG+CGG | - | chr4.4:45957197-45957216 | MS.gene007740:intron | 35.0% |
| AACACTTATGTGCCACAATG+TGG | + | chr4.4:45960645-45960664 | None:intergenic | 40.0% | |
| AAGATGGAAGAGAGCTAGAA+AGG | + | chr4.4:45960126-45960145 | None:intergenic | 40.0% | |
| AATAGAAAACGTGAGGATGG+TGG | - | chr4.4:45959850-45959869 | MS.gene007740:intron | 40.0% | |
| AATCGAAAACGTGAGGAAGA+TGG | + | chr4.4:45960142-45960161 | None:intergenic | 40.0% | |
| ACACGCTGCTATCAAATAGA+AGG | - | chr4.4:45959278-45959297 | MS.gene007740:intron | 40.0% | |
| AGATGTTTGTGCATTGCCAA+TGG | + | chr4.4:45958258-45958277 | None:intergenic | 40.0% | |
| AGTGGTACTTGTATGAAAGC+AGG | - | chr4.4:45960573-45960592 | MS.gene007740:intron | 40.0% | |
| ATGGTTTCTTTCACACACAC+AGG | - | chr4.4:45960187-45960206 | MS.gene007740:intron | 40.0% | |
| ATTCCGTCGAAATCAAAGAG+GGG | - | chr4.4:45958446-45958465 | MS.gene007740:intron | 40.0% | |
| CAACAGAACTGCATAAACTG+TGG | - | chr4.4:45957832-45957851 | MS.gene007740:intron | 40.0% | |
| CAATACCACTGTGATGAATG+TGG | - | chr4.4:45958022-45958041 | MS.gene007740:intron | 40.0% | |
| CAATGACAAGGAAATGTTGG+TGG | + | chr4.4:45960049-45960068 | None:intergenic | 40.0% | |
| CACAATGTGGAATTGCACAT+GGG | + | chr4.4:45960632-45960651 | None:intergenic | 40.0% | |
| CACCAACACTTCCTTGTAAT+TGG | + | chr4.4:45959943-45959962 | None:intergenic | 40.0% | |
| CATAAACTGTGGAGTATGCT+TGG | - | chr4.4:45957843-45957862 | MS.gene007740:intron | 40.0% | |
| CATCATCACACGATCTTCTT+TGG | + | chr4.4:45960078-45960097 | None:intergenic | 40.0% | |
| CTAAAGGAGCAAACAATCAG+AGG | - | chr4.4:45960239-45960258 | MS.gene007740:intron | 40.0% | |
| CTATTCCGTCGAAATCAAAG+AGG | - | chr4.4:45958444-45958463 | MS.gene007740:intron | 40.0% | |
| GAAATCAGTGTCTTACCTTG+TGG | - | chr4.4:45958648-45958667 | MS.gene007740:CDS | 40.0% | |
| GCTAGAAAGGTTGTTGAATG+AGG | + | chr4.4:45960113-45960132 | None:intergenic | 40.0% | |
| GGAATATCATGACGATCATC+AGG | + | chr4.4:45957569-45957588 | None:intergenic | 40.0% | |
| GGTTTCTTTCACATACACAG+AGG | + | chr4.4:45959803-45959822 | None:intergenic | 40.0% | |
| GTGGAAGAACCTTGATGAAA+TGG | - | chr4.4:45958851-45958870 | MS.gene007740:intron | 40.0% | |
| GTGTGTGAAAGAAACCATTG+TGG | + | chr4.4:45960185-45960204 | None:intergenic | 40.0% | |
| TCCGCGTCATGAAGTTAAAA+AGG | - | chr4.4:45957586-45957605 | MS.gene007740:intron | 40.0% | |
| TCTGTGATATGTCAAGTGTG+TGG | - | chr4.4:45958832-45958851 | MS.gene007740:CDS | 40.0% | |
| TGATCACGATCATGTATTGG+TGG | + | chr4.4:45960011-45960030 | None:intergenic | 40.0% | |
| TGGATACTGTGCAATGATTG+TGG | - | chr4.4:45960598-45960617 | MS.gene007740:intron | 40.0% | |
| TTGAAGACGTGTCTAGTGTT+TGG | + | chr4.4:45958362-45958381 | None:intergenic | 40.0% | |
| !! | CAATTACAAGGAAGTGTTGG+TGG | - | chr4.4:45959941-45959960 | MS.gene007740:CDS | 40.0% |
| !!! | ACTCACCGCATTTTTTGCAA+TGG | + | chr4.4:45958188-45958207 | None:intergenic | 40.0% |
| AAGTGTATAGTGTGGCCACA+AGG | + | chr4.4:45958666-45958685 | None:intergenic | 45.0% | |
| AGATGCCACATTCATCACAG+TGG | + | chr4.4:45958030-45958049 | None:intergenic | 45.0% | |
| CCACAATGTGGAATTGCACA+TGG | + | chr4.4:45960633-45960652 | None:intergenic | 45.0% | |
| CCATGTGCAATTCCACATTG+TGG | - | chr4.4:45960630-45960649 | MS.gene007740:intron | 45.0% | |
| GATAAAGAAAGCCTTGGAGC+TGG | + | chr4.4:45959034-45959053 | None:intergenic | 45.0% | |
| GGATTCATATGACTCTGGCA+TGG | + | chr4.4:45956921-45956940 | None:intergenic | 45.0% | |
| GTTGCAACTCCTACAACACA+AGG | - | chr4.4:45960668-45960687 | MS.gene007740:intron | 45.0% | |
| TTACAACAACTCCAGCTCCA+AGG | - | chr4.4:45959020-45959039 | MS.gene007740:intron | 45.0% | |
| ! | ATGCCCCTCTTTGATTTCGA+CGG | + | chr4.4:45958452-45958471 | None:intergenic | 45.0% |
| !! | CAAGGAAATGTTGGTGGTGA+TGG | + | chr4.4:45960043-45960062 | None:intergenic | 45.0% |
| !! | TGATTCAGGCATTGGAGTTG+AGG | + | chr4.4:45958980-45958999 | None:intergenic | 45.0% |
| !! | TTCTAGCTCATGCTCGTCTA+GGG | - | chr4.4:45960708-45960727 | MS.gene007740:CDS | 45.0% |
| !!! | AATGATTTTTTATTTATTTT+TGG | + | chr4.4:45960215-45960234 | None:intergenic | 5.0% |
| CTAGACGAGCATGAGCTAGA+AGG | + | chr4.4:45960709-45960728 | None:intergenic | 50.0% | |
| GCACTGCCACAATGAAGCTA+AGG | - | chr4.4:45957155-45957174 | MS.gene007740:intron | 50.0% | |
| GTGATGAATGTGGCATCTGC+AGG | - | chr4.4:45958032-45958051 | MS.gene007740:intron | 50.0% | |
| ! | CGTGTGATGATGTTGCGTGA+GGG | - | chr4.4:45960086-45960105 | MS.gene007740:CDS | 50.0% |
| ! | TCGTGTGATGATGTTGCGTG+AGG | - | chr4.4:45960085-45960104 | MS.gene007740:CDS | 50.0% |
| !! | CAAGGAAGTGTTGGTGGTGA+TGG | - | chr4.4:45959947-45959966 | MS.gene007740:CDS | 50.0% |
| !! | CTTCTAGCTCATGCTCGTCT+AGG | - | chr4.4:45960707-45960726 | MS.gene007740:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45956911 | 45960750 | 45956911 | ID=MS.gene007740 |
| chr4.4 | mRNA | 45956911 | 45960750 | 45956911 | ID=MS.gene007740.t1;Parent=MS.gene007740 |
| chr4.4 | exon | 45960692 | 45960750 | 45960692 | ID=MS.gene007740.t1.exon1;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45960692 | 45960750 | 45960692 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45960485 | 45960572 | 45960485 | ID=MS.gene007740.t1.exon2;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45960485 | 45960572 | 45960485 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45960054 | 45960113 | 45960054 | ID=MS.gene007740.t1.exon3;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45960054 | 45960113 | 45960054 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45959936 | 45959968 | 45959936 | ID=MS.gene007740.t1.exon4;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45959936 | 45959968 | 45959936 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45959755 | 45959832 | 45959755 | ID=MS.gene007740.t1.exon5;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45959755 | 45959832 | 45959755 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45959608 | 45959651 | 45959608 | ID=MS.gene007740.t1.exon6;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45959608 | 45959651 | 45959608 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45959460 | 45959500 | 45959460 | ID=MS.gene007740.t1.exon7;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45959460 | 45959500 | 45959460 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45959142 | 45959224 | 45959142 | ID=MS.gene007740.t1.exon8;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45959142 | 45959224 | 45959142 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45958943 | 45959034 | 45958943 | ID=MS.gene007740.t1.exon9;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45958943 | 45959034 | 45958943 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45958789 | 45958858 | 45958789 | ID=MS.gene007740.t1.exon10;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45958789 | 45958858 | 45958789 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45958647 | 45958688 | 45958647 | ID=MS.gene007740.t1.exon11;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45958647 | 45958688 | 45958647 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| chr4.4 | exon | 45956911 | 45957066 | 45956911 | ID=MS.gene007740.t1.exon12;Parent=MS.gene007740.t1 |
| chr4.4 | CDS | 45956911 | 45957066 | 45956911 | ID=cds.MS.gene007740.t1;Parent=MS.gene007740.t1 |
| Gene Sequence |
| Protein sequence |
