AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96207.t1 MTR_2g020040 99.625 267 1 0 1 267 1 267 0.0 551
MS.gene96207.t1 MTR_4g057310 58.704 247 101 1 15 260 15 261 1.79e-110 320
MS.gene96207.t1 MTR_3g108240 58.065 248 103 1 12 258 58 305 3.23e-107 313
MS.gene96207.t1 MTR_1g047740 57.600 250 105 1 10 258 48 297 1.43e-106 311
MS.gene96207.t1 MTR_7g102990 54.800 250 112 1 10 258 16 265 7.69e-106 309
MS.gene96207.t1 MTR_3g108240 56.972 251 106 2 10 258 53 303 1.31e-104 306
MS.gene96207.t1 MTR_4g057310 59.000 200 81 1 15 213 18 217 9.27e-88 260
MS.gene96207.t1 MTR_1g010150 57.711 201 85 0 58 258 1 201 9.90e-87 257
MS.gene96207.t1 MTR_7g102990 54.545 176 79 1 10 184 16 191 1.64e-70 216
MS.gene96207.t1 MTR_8g104410 38.672 256 140 6 10 260 991 1234 7.26e-55 190
MS.gene96207.t1 MTR_8g104410 38.672 256 140 6 10 260 755 998 1.07e-54 190
MS.gene96207.t1 MTR_4g107440 40.000 250 133 6 16 260 1034 1271 6.20e-54 188
MS.gene96207.t1 MTR_6g083900 39.453 256 139 6 10 260 980 1224 3.59e-53 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96207.t1 AT5G18650 81.273 267 50 0 1 267 1 267 4.24e-169 468
MS.gene96207.t1 AT3G62970 60.985 264 101 2 4 266 20 282 3.46e-124 355
MS.gene96207.t1 AT5G22920 59.363 251 101 1 9 258 18 268 3.97e-112 325
MS.gene96207.t1 AT3G62970 61.333 225 86 1 4 227 20 244 1.30e-107 312
MS.gene96207.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene96207.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene96207.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene96207.t1 AT5G25560 54.851 268 110 2 2 258 37 304 1.65e-105 308
MS.gene96207.t1 AT5G25560 52.878 278 110 3 2 258 37 314 1.43e-102 301
MS.gene96207.t1 AT3G62970 60.648 216 84 1 4 218 20 235 1.55e-102 298
MS.gene96207.t1 AT5G25560 53.668 259 119 1 1 258 41 299 2.23e-100 295
MS.gene96207.t1 AT5G22920 58.182 220 91 1 9 227 18 237 1.43e-94 278
MS.gene96207.t1 AT3G18290 39.313 262 142 6 10 266 998 1247 1.69e-55 192
MS.gene96207.t1 AT1G18910 41.200 250 131 6 13 258 1015 1252 2.06e-55 192
MS.gene96207.t1 AT1G74770 38.554 249 137 6 16 260 1023 1259 4.90e-54 188
MS.gene96207.t1 AT1G74770 37.129 202 111 6 16 213 1023 1212 2.30e-39 146

Find 54 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTGAACGTCTTGATTT+TGG 0.056272 2.2:-64887630 MS.gene96207:CDS
GAAGTTTCCTTCCACATTAT+TGG 0.198378 2.2:-64884744 MS.gene96207:CDS
TTGATAGGTGTAAGCATTAT+AGG 0.242827 2.2:-64887499 MS.gene96207:intron
AAGTTTCCTTCCACATTATT+GGG 0.296468 2.2:-64884743 MS.gene96207:CDS
TATCTTTCAATGAGTCAAAA+AGG 0.335621 2.2:+64885595 None:intergenic
TGGAGTTCTCCACACATAAA+TGG 0.341398 2.2:+64885762 None:intergenic
GCATGGACCTCGTAACAAAT+TGG 0.347063 2.2:+64885725 None:intergenic
CTGTCATGCCTGATGATTAT+CGG 0.370354 2.2:-64885197 MS.gene96207:CDS
TTCGATTATTGCGGAAGAAC+AGG 0.378233 2.2:+64884672 None:intergenic
AATCACCGACTTGGAACATA+TGG 0.383543 2.2:+64885405 None:intergenic
CCCAAAATCAAGACGTTCAA+TGG 0.407306 2.2:+64887629 None:intergenic
ACAAGTTCGTGGTGATCAAA+AGG 0.413852 2.2:+64887285 None:intergenic
TTTCTATTCCGATAATCATC+AGG 0.448183 2.2:+64885189 None:intergenic
AGTTTCACTGTGACGATTGT+GGG 0.471619 2.2:-64886786 MS.gene96207:CDS
CAGTTTCACTGTGACGATTG+TGG 0.485260 2.2:-64886787 MS.gene96207:CDS
CGCATTTATGCCCAATAATG+TGG 0.502852 2.2:+64884733 None:intergenic
CACTAACTGTGGTGTCAGAA+TGG 0.512129 2.2:-64887004 MS.gene96207:CDS
CAAGTTCGTGGTGATCAAAA+GGG 0.517589 2.2:+64887286 None:intergenic
TAATTTGTAAACAGAGTTGG+TGG 0.530363 2.2:-64886684 MS.gene96207:intron
GTGACGATTGTGGGATCTGC+AGG 0.532433 2.2:-64886777 MS.gene96207:intron
ACATACCACACTTCTTGCAA+TGG 0.545335 2.2:+64886646 None:intergenic
ATCAAGACGTTCAATGGCAG+AGG 0.546666 2.2:+64887635 None:intergenic
AGACATGTCAATCACCGACT+TGG 0.549483 2.2:+64885396 None:intergenic
TCGTGCTCCTTGTTGCAATG+AGG 0.561125 2.2:-64887462 MS.gene96207:CDS
CATCATTACGAACAAGTTCG+TGG 0.564061 2.2:+64887274 None:intergenic
GTCGGTGATTGACATGTCTA+CGG 0.564442 2.2:-64885392 MS.gene96207:CDS
GATACAACCGTTATGAAATG+TGG 0.566189 2.2:-64885576 MS.gene96207:CDS
TGTGTGGCCACATTTCATAA+CGG 0.569384 2.2:+64885569 None:intergenic
CACATTATTGGGCATAAATG+CGG 0.569809 2.2:-64884732 MS.gene96207:CDS
ACTAACTGTGGTGTCAGAAT+GGG 0.571435 2.2:-64887003 MS.gene96207:CDS
AATTGGACAATGATGCCTCA+TGG 0.578817 2.2:+64885742 None:intergenic
TGTCACGCTTTATCATCTCA+TGG 0.581180 2.2:+64885529 None:intergenic
CTGCAAGAATTCGATTATTG+CGG 0.583669 2.2:+64884663 None:intergenic
TGATGATTATCGGAATAGAA+AGG 0.589941 2.2:-64885187 MS.gene96207:intron
TATTTCCATTGCAAGAAGTG+TGG 0.601945 2.2:-64886651 MS.gene96207:intron
TTTATGCCCAATAATGTGGA+AGG 0.608898 2.2:+64884737 None:intergenic
GCTCAAGTTTGCACTAACTG+TGG 0.612321 2.2:-64887015 MS.gene96207:CDS
ATCACCGACTTGGAACATAT+GGG 0.612737 2.2:+64885406 None:intergenic
AATAATGTGGAAGGAAACTT+CGG 0.612783 2.2:+64884746 None:intergenic
AGCATTATAGGAGAAGATGC+AGG 0.620867 2.2:-64887487 MS.gene96207:CDS
ATGGAAGAGAATTGATGAAG+AGG 0.624716 2.2:-64885368 MS.gene96207:intron
TGATTGACATGTCTACGGCA+TGG 0.625316 2.2:-64885387 MS.gene96207:CDS
GATTATTGCGGAAGAACAGG+AGG 0.633089 2.2:+64884675 None:intergenic
TCATTGTCCAATTTGTTACG+AGG 0.635894 2.2:-64885732 MS.gene96207:intron
GAGTAAACCTCATTGCAACA+AGG 0.647135 2.2:+64887455 None:intergenic
AATTTGTAAACAGAGTTGGT+GGG 0.647864 2.2:-64886683 MS.gene96207:intron
TCATTGTCATAACGAGGCAA+CGG 0.653857 2.2:-64887426 MS.gene96207:intron
TTGTCCCATATGTTCCAAGT+CGG 0.661678 2.2:-64885410 MS.gene96207:CDS
TTGCCTCGTTATGACAATGA+CGG 0.668381 2.2:+64887429 None:intergenic
CATCATCAAAGAATTTGCAG+AGG 0.687660 2.2:+64886965 None:intergenic
AACATTCACAATGCATTGTG+TGG 0.691022 2.2:+64885553 None:intergenic
GCGTGATAACCATTTATGTG+TGG 0.698690 2.2:-64885771 MS.gene96207:CDS
TTGCCGTCATTGTCATAACG+AGG 0.718027 2.2:-64887432 MS.gene96207:CDS
TATGTGTGGAGAACTCCATG+AGG 0.777816 2.2:-64885757 MS.gene96207:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAATGAAAACTTTA+TGG + chr2.2:64884746-64884765 None:intergenic 15.0%
!!! TTATTTGATTTTTGATTGAT+AGG - chr2.2:64884805-64884824 MS.gene96207:intron 15.0%
!!! TTTAAGCTTTTTAATTTTGT+GGG - chr2.2:64884779-64884798 MS.gene96207:CDS 15.0%
!!! TTTTAAGCTTTTTAATTTTG+TGG - chr2.2:64884778-64884797 MS.gene96207:CDS 15.0%
!! AACTTTATGGAAAATGAAAA+AGG + chr2.2:64884733-64884752 None:intergenic 20.0%
!! AATTATGAATAGATACATAC+TGG + chr2.2:64885209-64885228 None:intergenic 20.0%
!! AATTGAAAAACACAAATCAA+AGG + chr2.2:64885094-64885113 None:intergenic 20.0%
!! TAAATGAAAACATGGTATAA+GGG + chr2.2:64886633-64886652 None:intergenic 20.0%
!! TGTATTAAACTAGTATTACT+AGG + chr2.2:64887170-64887189 None:intergenic 20.0%
!! TTAAATGAAAACATGGTATA+AGG + chr2.2:64886634-64886653 None:intergenic 20.0%
!!! AGATTTTTAACATGAAAACA+AGG + chr2.2:64884946-64884965 None:intergenic 20.0%
!!! ATCTAATAAATTTATCGACT+TGG - chr2.2:64886449-64886468 MS.gene96207:intron 20.0%
!!! ATTTCTGTTTGATAATGTAT+TGG - chr2.2:64886150-64886169 MS.gene96207:intron 20.0%
!!! CAAAATCATTTTTCTATAGA+TGG - chr2.2:64885994-64886013 MS.gene96207:intron 20.0%
!!! CATCTATAGAAAAATGATTT+TGG + chr2.2:64885996-64886015 None:intergenic 20.0%
!!! TAATCTCATTGTTTTTGATT+TGG - chr2.2:64885469-64885488 MS.gene96207:intron 20.0%
!!! TTTCTGTTTGATAATGTATT+GGG - chr2.2:64886151-64886170 MS.gene96207:intron 20.0%
! ACTAAAGATGATAACATGTT+TGG + chr2.2:64885846-64885865 None:intergenic 25.0%
! ATGTTGAACAAGTAAGATTA+AGG - chr2.2:64885065-64885084 MS.gene96207:intron 25.0%
! ATGTTTGATGTCAAATATGA+AGG + chr2.2:64887235-64887254 None:intergenic 25.0%
! ATTTGAGTAAATAGTTTCTG+AGG - chr2.2:64885574-64885593 MS.gene96207:CDS 25.0%
! CAATTCTTTCATACTATCAA+AGG + chr2.2:64885823-64885842 None:intergenic 25.0%
! GTATGTATTTATTCATCACA+AGG - chr2.2:64885690-64885709 MS.gene96207:intron 25.0%
! TAGTTGCATCTCATAAATTT+GGG + chr2.2:64885603-64885622 None:intergenic 25.0%
! TATCTTTCAATGAGTCAAAA+AGG + chr2.2:64886727-64886746 None:intergenic 25.0%
! TATGTAATATTAACTCGACT+AGG - chr2.2:64886868-64886887 MS.gene96207:intron 25.0%
! TGTTGAACAAGTAAGATTAA+GGG - chr2.2:64885066-64885085 MS.gene96207:intron 25.0%
! TTAGTTGCATCTCATAAATT+TGG + chr2.2:64885604-64885623 None:intergenic 25.0%
! TTCTCTGAATTCATCTATTA+TGG - chr2.2:64886394-64886413 MS.gene96207:intron 25.0%
!! ACCATGTTTTCATTTAAACA+AGG - chr2.2:64886637-64886656 MS.gene96207:intron 25.0%
!! ATGTAATTTGTAAACAGAGT+TGG - chr2.2:64885632-64885651 MS.gene96207:intron 25.0%
!! CTCTTTAATGTTTCTTTTGA+AGG - chr2.2:64885279-64885298 MS.gene96207:intron 25.0%
!! TCCTTGTTTAAATGAAAACA+TGG + chr2.2:64886641-64886660 None:intergenic 25.0%
!! TGAAATCAGAATCCATTTTA+GGG - chr2.2:64886212-64886231 MS.gene96207:intron 25.0%
!! TTATGAGATGCAACTAATTT+TGG - chr2.2:64885607-64885626 MS.gene96207:intron 25.0%
!!! ATCATTTTTCTATAGATGGA+TGG - chr2.2:64885998-64886017 MS.gene96207:intron 25.0%
!!! TCTGTTGTGTTTTTGTTTTT+TGG - chr2.2:64885238-64885257 MS.gene96207:intron 25.0%
!!! TTATTGCTTTTTTCTGATCT+GGG - chr2.2:64884970-64884989 MS.gene96207:intron 25.0%
!!! TTGTGTTTTTGTTTTTTGGA+TGG - chr2.2:64885242-64885261 MS.gene96207:intron 25.0%
AAAACATGGTATAAGGGAAA+GGG + chr2.2:64886627-64886646 None:intergenic 30.0%
AAGTTTCCTTCCACATTATT+GGG - chr2.2:64887576-64887595 MS.gene96207:intron 30.0%
AATAATGTGGAAGGAAACTT+CGG + chr2.2:64887576-64887595 None:intergenic 30.0%
ACAAAGTGAAGTCAAATAGT+GGG + chr2.2:64887353-64887372 None:intergenic 30.0%
ATAACAAGAACAAGGGAAAA+AGG + chr2.2:64886188-64886207 None:intergenic 30.0%
GAATAAGGTTAGAAGTTCTA+TGG + chr2.2:64886075-64886094 None:intergenic 30.0%
GATATATGCATGTGAAAGAA+AGG + chr2.2:64887470-64887489 None:intergenic 30.0%
TACAAAGTGAAGTCAAATAG+TGG + chr2.2:64887354-64887373 None:intergenic 30.0%
TCATCGAATACGAGAAAAAA+TGG + chr2.2:64885719-64885738 None:intergenic 30.0%
TCTTTCACATGCATATATCA+TGG - chr2.2:64887471-64887490 MS.gene96207:CDS 30.0%
TGATGATTATCGGAATAGAA+AGG - chr2.2:64887132-64887151 MS.gene96207:intron 30.0%
TTGACAATACTAAGCATGAA+TGG - chr2.2:64887435-64887454 MS.gene96207:CDS 30.0%
TTGACATCAAACATGCTTAT+GGG - chr2.2:64887241-64887260 MS.gene96207:intron 30.0%
TTGATAGGTGTAAGCATTAT+AGG - chr2.2:64884820-64884839 MS.gene96207:intron 30.0%
TTTCTATTCCGATAATCATC+AGG + chr2.2:64887133-64887152 None:intergenic 30.0%
TTTGACATCAAACATGCTTA+TGG - chr2.2:64887240-64887259 MS.gene96207:intron 30.0%
! AAAATGGATTCTGATTTCAG+AGG + chr2.2:64886211-64886230 None:intergenic 30.0%
! AATTTGTAAACAGAGTTGGT+GGG - chr2.2:64885636-64885655 MS.gene96207:intron 30.0%
! CTGAAATCAGAATCCATTTT+AGG - chr2.2:64886211-64886230 MS.gene96207:intron 30.0%
! TAATTTGTAAACAGAGTTGG+TGG - chr2.2:64885635-64885654 MS.gene96207:intron 30.0%
! TTTTATGCTCCACAATTATC+TGG - chr2.2:64887018-64887037 MS.gene96207:CDS 30.0%
!! AAATTTATCGACTTGGTTAG+TGG - chr2.2:64886456-64886475 MS.gene96207:intron 30.0%
!!! ATGGATTGTTTTGTTTCCAT+TGG - chr2.2:64886413-64886432 MS.gene96207:intron 30.0%
!!! CTTATTGCTTTTTTCTGATC+TGG - chr2.2:64884969-64884988 MS.gene96207:intron 30.0%
!!! GTTTTTTGAGAACCACTTTT+AGG + chr2.2:64886239-64886258 None:intergenic 30.0%
AACATTCACAATGCATTGTG+TGG + chr2.2:64886769-64886788 None:intergenic 35.0%
ATAAATTGCTCCATTTCGAC+AGG - chr2.2:64886504-64886523 MS.gene96207:intron 35.0%
ATGGAAGAGAATTGATGAAG+AGG - chr2.2:64886951-64886970 MS.gene96207:intron 35.0%
CACATTATTGGGCATAAATG+CGG - chr2.2:64887587-64887606 MS.gene96207:intron 35.0%
CAGCTGATAGAATCATCAAT+AGG + chr2.2:64885896-64885915 None:intergenic 35.0%
CATCATCAAAGAATTTGCAG+AGG + chr2.2:64885357-64885376 None:intergenic 35.0%
CATGTGAAAGAAAGGACAAA+AGG + chr2.2:64887462-64887481 None:intergenic 35.0%
GAAAACATGGTATAAGGGAA+AGG + chr2.2:64886628-64886647 None:intergenic 35.0%
GAAATCACTTGAGAACAAGT+TGG + chr2.2:64886097-64886116 None:intergenic 35.0%
GAAGTTTCCTTCCACATTAT+TGG - chr2.2:64887575-64887594 MS.gene96207:intron 35.0%
GATACAACCGTTATGAAATG+TGG - chr2.2:64886743-64886762 MS.gene96207:intron 35.0%
GTAACTACCATAGATCACAA+GGG + chr2.2:64886308-64886327 None:intergenic 35.0%
GTCAAATATGAAGGTTCTTG+CGG + chr2.2:64887226-64887245 None:intergenic 35.0%
TAAATTGCTCCATTTCGACA+GGG - chr2.2:64886505-64886524 MS.gene96207:intron 35.0%
TATTAACTCGACTAGGTGTA+TGG - chr2.2:64886875-64886894 MS.gene96207:intron 35.0%
TATTTCCATTGCAAGAAGTG+TGG - chr2.2:64885668-64885687 MS.gene96207:intron 35.0%
TCAGAGGATAACAAGAACAA+GGG + chr2.2:64886195-64886214 None:intergenic 35.0%
TGTTCTTGACCAGATAATTG+TGG + chr2.2:64887030-64887049 None:intergenic 35.0%
TTCAGAGGATAACAAGAACA+AGG + chr2.2:64886196-64886215 None:intergenic 35.0%
TTTATGCCCAATAATGTGGA+AGG + chr2.2:64887585-64887604 None:intergenic 35.0%
! CCATTGAACGTCTTGATTTT+GGG - chr2.2:64884690-64884709 MS.gene96207:CDS 35.0%
! CTTGAGAACAAGTTGGAATA+AGG + chr2.2:64886090-64886109 None:intergenic 35.0%
!! ACACACTGCTTTAGAAAACA+AGG + chr2.2:64886031-64886050 None:intergenic 35.0%
!! ACATGAGATGTTGATGATTG+TGG - chr2.2:64885127-64885146 MS.gene96207:intron 35.0%
!! ATTTTGGGAAGATGGGATAT+GGG - chr2.2:64884705-64884724 MS.gene96207:CDS 35.0%
!! TCATTGTCCAATTTGTTACG+AGG - chr2.2:64886587-64886606 MS.gene96207:intron 35.0%
!! TGTTTGCATCTTGTTGTTTC+AGG - chr2.2:64885154-64885173 MS.gene96207:intron 35.0%
!!! CCATGGATCAAGGTTTTTTT+GGG + chr2.2:64886330-64886349 None:intergenic 35.0%
!!! GCGTTTTGCGTTTTTTTGAA+AGG - chr2.2:64886349-64886368 MS.gene96207:intron 35.0%
!!! GTTTTGTTTCCATTGGACTT+TGG - chr2.2:64886420-64886439 MS.gene96207:intron 35.0%
AAGGAATTTCTACATGTCCC+TGG - chr2.2:64886656-64886675 MS.gene96207:CDS 40.0%
AAGTATCCAAACCTGCAACA+CGG + chr2.2:64887531-64887550 None:intergenic 40.0%
AATTGGACAATGATGCCTCA+TGG + chr2.2:64886580-64886599 None:intergenic 40.0%
ACAAGAACAAGGGAAAAAGG+AGG + chr2.2:64886185-64886204 None:intergenic 40.0%
ACAAGTTCGTGGTGATCAAA+AGG + chr2.2:64885037-64885056 None:intergenic 40.0%
ACATACCACACTTCTTGCAA+TGG + chr2.2:64885676-64885695 None:intergenic 40.0%
AGAATTGATGAAGAGGTAGC+TGG - chr2.2:64886958-64886977 MS.gene96207:intron 40.0%
AGCATTATAGGAGAAGATGC+AGG - chr2.2:64884832-64884851 MS.gene96207:intron 40.0%
AGTTTCACTGTGACGATTGT+GGG - chr2.2:64885533-64885552 MS.gene96207:CDS 40.0%
CAAAAAAACGCAAAACGCCA+TGG + chr2.2:64886347-64886366 None:intergenic 40.0%
CAACGCACAATTGACAACAT+TGG + chr2.2:64887272-64887291 None:intergenic 40.0%
CAAGTTCGTGGTGATCAAAA+GGG + chr2.2:64885036-64885055 None:intergenic 40.0%
CATCATTACGAACAAGTTCG+TGG + chr2.2:64885048-64885067 None:intergenic 40.0%
CCCAAAAAAACCTTGATCCA+TGG - chr2.2:64886327-64886346 MS.gene96207:intron 40.0%
CCCAAAATCAAGACGTTCAA+TGG + chr2.2:64884693-64884712 None:intergenic 40.0%
CGCATTTATGCCCAATAATG+TGG + chr2.2:64887589-64887608 None:intergenic 40.0%
CTGTCATGCCTGATGATTAT+CGG - chr2.2:64887122-64887141 MS.gene96207:intron 40.0%
GAGAAAACTATTGCCAACTG+AGG + chr2.2:64886379-64886398 None:intergenic 40.0%
GAGTAAACCTCATTGCAACA+AGG + chr2.2:64884867-64884886 None:intergenic 40.0%
GATATGACTCCAAAGTCCAA+TGG + chr2.2:64886432-64886451 None:intergenic 40.0%
GCGTGATAACCATTTATGTG+TGG - chr2.2:64886548-64886567 MS.gene96207:intron 40.0%
GGTAACTACCATAGATCACA+AGG + chr2.2:64886309-64886328 None:intergenic 40.0%
GTTCAAACCCTTGTGATCTA+TGG - chr2.2:64886298-64886317 MS.gene96207:intron 40.0%
TCATTGTCATAACGAGGCAA+CGG - chr2.2:64884893-64884912 MS.gene96207:intron 40.0%
TGGAGTTCTCCACACATAAA+TGG + chr2.2:64886560-64886579 None:intergenic 40.0%
TGTCACGCTTTATCATCTCA+TGG + chr2.2:64886793-64886812 None:intergenic 40.0%
TGTGTGGCCACATTTCATAA+CGG + chr2.2:64886753-64886772 None:intergenic 40.0%
TTGCCTCGTTATGACAATGA+CGG + chr2.2:64884893-64884912 None:intergenic 40.0%
TTGTCCCATATGTTCCAAGT+CGG - chr2.2:64886909-64886928 MS.gene96207:intron 40.0%
TTGTTCGTTCGATATGCAGA+CGG - chr2.2:64885501-64885520 MS.gene96207:intron 40.0%
! ACTAACTGTGGTGTCAGAAT+GGG - chr2.2:64885316-64885335 MS.gene96207:intron 40.0%
! GCCATTGAACGTCTTGATTT+TGG - chr2.2:64884689-64884708 MS.gene96207:CDS 40.0%
!! AATCACCGACTTGGAACATA+TGG + chr2.2:64886917-64886936 None:intergenic 40.0%
!! ACGTCTTGATTTTGGGAAGA+TGG - chr2.2:64884697-64884716 MS.gene96207:CDS 40.0%
!! ATCACCGACTTGGAACATAT+GGG + chr2.2:64886916-64886935 None:intergenic 40.0%
!! CCACTTTTAGGTCCCTAAAA+TGG + chr2.2:64886227-64886246 None:intergenic 40.0%
!! CCATTTTAGGGACCTAAAAG+TGG - chr2.2:64886224-64886243 MS.gene96207:intron 40.0%
!! CGTCTTGATTTTGGGAAGAT+GGG - chr2.2:64884698-64884717 MS.gene96207:CDS 40.0%
!! GATTTTGGGAAGATGGGATA+TGG - chr2.2:64884704-64884723 MS.gene96207:CDS 40.0%
!! TTTGAAAGGTTAGCCTCAGT+TGG - chr2.2:64886363-64886382 MS.gene96207:intron 40.0%
!!! GCCATGGATCAAGGTTTTTT+TGG + chr2.2:64886331-64886350 None:intergenic 40.0%
ACATGGTATAAGGGAAAGGG+AGG + chr2.2:64886624-64886643 None:intergenic 45.0%
AGAACAAGGGAAAAAGGAGG+TGG + chr2.2:64886182-64886201 None:intergenic 45.0%
AGAATACTCTCCTGCTTCCA+GGG + chr2.2:64886676-64886695 None:intergenic 45.0%
ATAGCAAGACCCTGTCGAAA+TGG + chr2.2:64886517-64886536 None:intergenic 45.0%
ATCAAGACGTTCAATGGCAG+AGG + chr2.2:64884687-64884706 None:intergenic 45.0%
CAGTTTCACTGTGACGATTG+TGG - chr2.2:64885532-64885551 MS.gene96207:CDS 45.0%
GCATGGACCTCGTAACAAAT+TGG + chr2.2:64886597-64886616 None:intergenic 45.0%
GCTCAAGTTTGCACTAACTG+TGG - chr2.2:64885304-64885323 MS.gene96207:intron 45.0%
GTCGGTGATTGACATGTCTA+CGG - chr2.2:64886927-64886946 MS.gene96207:intron 45.0%
TATGTGTGGAGAACTCCATG+AGG - chr2.2:64886562-64886581 MS.gene96207:intron 45.0%
TGATTGACATGTCTACGGCA+TGG - chr2.2:64886932-64886951 MS.gene96207:intron 45.0%
TGTTCGTTCGATATGCAGAC+GGG - chr2.2:64885502-64885521 MS.gene96207:intron 45.0%
TTGCCGTCATTGTCATAACG+AGG - chr2.2:64884887-64884906 MS.gene96207:intron 45.0%
! AGACATGTCAATCACCGACT+TGG + chr2.2:64886926-64886945 None:intergenic 45.0%
! CACTAACTGTGGTGTCAGAA+TGG - chr2.2:64885315-64885334 MS.gene96207:intron 45.0%
ACGCAAAACGCCATGGATCA+AGG + chr2.2:64886340-64886359 None:intergenic 50.0%
CAGAATACTCTCCTGCTTCC+AGG + chr2.2:64886677-64886696 None:intergenic 50.0%
CTAAAACAGCACCGTGTTGC+AGG - chr2.2:64887517-64887536 MS.gene96207:intron 50.0%
GTCTCATTGCATCAGCAAGC+AGG + chr2.2:64886128-64886147 None:intergenic 50.0%
GTTCGTTCGATATGCAGACG+GGG - chr2.2:64885503-64885522 MS.gene96207:intron 50.0%
TCGTGCTCCTTGTTGCAATG+AGG - chr2.2:64884857-64884876 MS.gene96207:intron 50.0%
TTCTACATGTCCCTGGAAGC+AGG - chr2.2:64886663-64886682 MS.gene96207:CDS 50.0%
ACAGCACCGTGTTGCAGGTT+TGG - chr2.2:64887522-64887541 MS.gene96207:intron 55.0%
AGGGAAAGGGAGGAAGAGCA+TGG + chr2.2:64886614-64886633 None:intergenic 55.0%
CTCGACTAGGTGTATGGCTC+AGG - chr2.2:64886881-64886900 MS.gene96207:intron 55.0%
GTGACGATTGTGGGATCTGC+AGG - chr2.2:64885542-64885561 MS.gene96207:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 64884677 64887664 64884677 ID=MS.gene96207
chr2.2 mRNA 64884677 64887664 64884677 ID=MS.gene96207.t1;Parent=MS.gene96207
chr2.2 exon 64887615 64887664 64887615 ID=MS.gene96207.t1.exon1;Parent=MS.gene96207.t1
chr2.2 CDS 64887615 64887664 64887615 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64887427 64887514 64887427 ID=MS.gene96207.t1.exon2;Parent=MS.gene96207.t1
chr2.2 CDS 64887427 64887514 64887427 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64887266 64887322 64887266 ID=MS.gene96207.t1.exon3;Parent=MS.gene96207.t1
chr2.2 CDS 64887266 64887322 64887266 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64887133 64887165 64887133 ID=MS.gene96207.t1.exon4;Parent=MS.gene96207.t1
chr2.2 CDS 64887133 64887165 64887133 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64886963 64887040 64886963 ID=MS.gene96207.t1.exon5;Parent=MS.gene96207.t1
chr2.2 CDS 64886963 64887040 64886963 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64886778 64886821 64886778 ID=MS.gene96207.t1.exon6;Parent=MS.gene96207.t1
chr2.2 CDS 64886778 64886821 64886778 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64886652 64886692 64886652 ID=MS.gene96207.t1.exon7;Parent=MS.gene96207.t1
chr2.2 CDS 64886652 64886692 64886652 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64885733 64885815 64885733 ID=MS.gene96207.t1.exon8;Parent=MS.gene96207.t1
chr2.2 CDS 64885733 64885815 64885733 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64885528 64885619 64885528 ID=MS.gene96207.t1.exon9;Parent=MS.gene96207.t1
chr2.2 CDS 64885528 64885619 64885528 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64885369 64885438 64885369 ID=MS.gene96207.t1.exon10;Parent=MS.gene96207.t1
chr2.2 CDS 64885369 64885438 64885369 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64885188 64885229 64885188 ID=MS.gene96207.t1.exon11;Parent=MS.gene96207.t1
chr2.2 CDS 64885188 64885229 64885188 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
chr2.2 exon 64884677 64884802 64884677 ID=MS.gene96207.t1.exon12;Parent=MS.gene96207.t1
chr2.2 CDS 64884677 64884802 64884677 ID=cds.MS.gene96207.t1;Parent=MS.gene96207.t1
Gene Sequence

>MS.gene96207

ATGGAAGCCTCTGCCATTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTACCTTTTTCATTTTCCATAAAGTTTTCATTTTTATTCAATTTTCATTGTTTTTAAGCTTTTTAATTTTGTGGGTATTTATTTGATTTTTGATTGATAGGTGTAAGCATTATAGGAGAAGATGCAGGATTCGTGCTCCTTGTTGCAATGAGGTTTACTCTTGCCGTCATTGTCATAACGAGGCAACGGTATTTTTTTTTTTTTTTGTTCTTTTTTCCTTGTTTTCATGTTAAAAATCTTGTCTTATTGCTTTTTTCTGATCTGGGTTTGTGTTATTTTTTTTCATTTTTAGAGCATGCTGAAAAACCCTTTTGATCACCACGAACTTGTTCGTAATGATGTTGAACAAGTAAGATTAAGGGCACCTTTGATTTGTGTTTTTCAATTACTGTGCAATTTTACATGAGATGTTGATGATTGTGGTTTTTGTTTGCATCTTGTTGTTTCAGGTTGTTTGTTCAGTTTGTGACACAGAGCAACCAGTATGTATCTATTCATAATTTGATTTGAATCTGTTGTGTTTTTGTTTTTTGGATGGATTTATGATGTTTTCTCTTTAATGTTTCTTTTGAAGGTTGCTCAAGTTTGCACTAACTGTGGTGTCAGAATGGGAGAATATTACTGTGACCTCTGCAAATTCTTTGATGATGATGTAATGATTTACTGAATAAATCTGCAGTATTTGATTTAAGTTTCTTCGTTTTTCGATATGATTGAATTTGAGAATATTGTTATTATTGATTAATCTCATTGTTTTTGATTTGGTGCTGATTGTTGTTCGTTCGATATGCAGACGGGGAAACAACAGTTTCACTGTGACGATTGTGGGATCTGCAGGTACAACTGTATTTGAGTAAATAGTTTCTGAGGTTTCCCAAATTTATGAGATGCAACTAATTTTGGTTATGTAATTTGTAAACAGAGTTGGTGGGAGTGAGAATTATTTCCATTGCAAGAAGTGTGGTATGTATTTATTCATCACAAGGCTGCCATTTTTTCTCGTATTCGATGAAACATATATTTATTTTTTTCAAATTAGCTTATGCTGCAAATTGTTAATTTTCATATTAATAGATGTTTCAATTATCTACTTCCTTTGATAGTATGAAAGAATTGCCAAACATGTTATCATCTTTAGTGACACTAGAAGTTCAAAATCACTATTACCTATTGATGATTCTATCAGCTGTTTTCTTTTTTCTGTTACAGTTGAGTACTAATCATTTTCATTCTAACATATTAGCTTTTGTCTTATCATTTTAGCTTCCAAAATCATTTTTCTATAGATGGATGGAATGAAACCTTGTTTTCTAAAGCAGTGTGTGAATTTAATACTACATATATTCCATAGAACTTCTAACCTTATTCCAACTTGTTCTCAAGTGATTTCTTATTTTACCTGCTTGCTGATGCAATGAGACGCATTTCTGTTTGATAATGTATTGGGCTTTGCCACCTCCTTTTTCCCTTGTTCTTGTTATCCTCTGAAATCAGAATCCATTTTAGGGACCTAAAAGTGGTTCTCAAAAAACAAAGAATTCAGAATCTAGTGTATCAATTCAAATAGTATAGTTCAAACCCTTGTGATCTATGGTAGTTACCCAAAAAAACCTTGATCCATGGCGTTTTGCGTTTTTTTGAAAGGTTAGCCTCAGTTGGCAATAGTTTTCTCTGAATTCATCTATTATGGATTGTTTTGTTTCCATTGGACTTTGGAGTCATATCTAATAAATTTATCGACTTGGTTAGTGGAACTATTTTTTTCTTCTGTTTTAAAATAAATTGCTCCATTTCGACAGGGTCTTGCTATTCAGTTGCTCTGCGTGATAACCATTTATGTGTGGAGAACTCCATGAGGCATCATTGTCCAATTTGTTACGAGGTCCATGCTCTTCCTCCCTTTCCCTTATACCATGTTTTCATTTAAACAAGGAATTTCTACATGTCCCTGGAAGCAGGAGAGTATTCTGATGTGACTTTATTGTGTTTCTACAGTACCTTTTTGACTCATTGAAAGATACAACCGTTATGAAATGTGGCCACACAATGCATTGTGAATGTTACCATGAGATGATAAAGCGTGACAAGTGAGTATATTGCTTACTATTTGACAGTTATTTCGTTTATAAAGCATTATCTCTTATGTAATATTAACTCGACTAGGTGTATGGCTCAGGTACTGTTGTCCCATATGTTCCAAGTCGGTGATTGACATGTCTACGGCATGGAAGAGAATTGATGAAGAGGTAGCTGGTTAAATTACATGCATCTGTTTTCACTTGATTTTAAGTTTTTATGCTCCACAATTATCTGGTCAAGAACATTGAATATATATGTTCTTTACTACAATTGTGATTTCTAACTAATTTATTTTTGCTATATTAGATCGAAGCAACTGTCATGCCTGATGATTATCGGAATAGAAAGGTAAAACTATAGTCCTAGTAATACTAGTTTAATACATGCTATCTCTAATTGTCTACATTTCATTCACAGCCGCAAGAACCTTCATATTTGACATCAAACATGCTTATGGGCATGACCAATGTTGTCAATTGTGCGTTGCAGAAAATAGAGATTCGTTAAAATTTCGATACGCTACAGTGCTATAGCGTCGCTATAGCCCACTATTTGACTTCACTTTGTACTAAATAGCGTATTGCAAACGATAGTGATTTGTTCAAATTCTGTTTTGCTATAACTGTTATTTGACAATACTAAGCATGAATGGACCTTTTGTCCTTTCTTTCACATGCATATATCATGGTTATATTAGCAAATTTCTGAGAACTAAAACAGCACCGTGTTGCAGGTTTGGATACTTTGTAACGACTGCAACGATACAACCGAAGTTTCCTTCCACATTATTGGGCATAAATGCGGTCACTGCAGTTCATATAACACTCGTGCTATTGCTCCTCCTGTTCTTCCGCAATAA
Protein sequence

>MS.gene96207.t1

MEASAIERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLKNPFDHHELVRNDVEQVVCSVCDTEQPVAQVCTNCGVRMGEYYCDLCKFFDDDTGKQQFHCDDCGICRVGGSENYFHCKKCGSCYSVALRDNHLCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSTAWKRIDEEIEATVMPDDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCSSYNTRAIAPPVLPQ