Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000434.t1 | GAU27691.1 | 72 | 346 | 84 | 2 | 2 | 334 | 16 | 361 | 8.70E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000434.t1 | Q6L8G0 | 49.5 | 327 | 162 | 1 | 11 | 334 | 27 | 353 | 3.4e-74 | 280.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000434.t1 | A0A2Z6M6N0 | 72.0 | 346 | 84 | 2 | 2 | 334 | 16 | 361 | 6.3e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066193 | MS.gene000434 | PPI |
| MS.gene000434 | MS.gene56999 | PPI |
| MS.gene62494 | MS.gene000434 | PPI |
| MS.gene000434 | MS.gene54167 | PPI |
| MS.gene045723 | MS.gene000434 | PPI |
| MS.gene000434 | MS.gene50197 | PPI |
| MS.gene000434 | MS.gene038972 | PPI |
| MS.gene009810 | MS.gene000434 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000434.t1 | MTR_3g081640 | 76.657 | 347 | 68 | 1 | 1 | 334 | 15 | 361 | 0.0 | 510 |
| MS.gene000434.t1 | MTR_3g081580 | 75.000 | 344 | 76 | 3 | 1 | 334 | 15 | 358 | 3.56e-174 | 487 |
| MS.gene000434.t1 | MTR_3g082050 | 76.331 | 338 | 75 | 1 | 2 | 334 | 12 | 349 | 2.65e-167 | 469 |
| MS.gene000434.t1 | MTR_3g082050 | 76.418 | 335 | 74 | 1 | 5 | 334 | 43 | 377 | 2.84e-166 | 468 |
| MS.gene000434.t1 | MTR_3g082050 | 77.287 | 317 | 67 | 1 | 23 | 334 | 56 | 372 | 6.43e-164 | 462 |
| MS.gene000434.t1 | MTR_3g081690 | 76.489 | 319 | 70 | 1 | 2 | 315 | 12 | 330 | 9.97e-157 | 442 |
| MS.gene000434.t1 | MTR_3g081690 | 77.517 | 298 | 62 | 1 | 23 | 315 | 56 | 353 | 2.67e-153 | 435 |
| MS.gene000434.t1 | MTR_2g064310 | 56.560 | 343 | 139 | 4 | 2 | 334 | 16 | 358 | 8.87e-133 | 382 |
| MS.gene000434.t1 | MTR_6g007687 | 51.471 | 340 | 149 | 4 | 1 | 332 | 14 | 345 | 3.07e-107 | 317 |
| MS.gene000434.t1 | MTR_8g105030 | 49.702 | 336 | 158 | 3 | 1 | 328 | 15 | 347 | 1.17e-106 | 317 |
| MS.gene000434.t1 | MTR_4g083570 | 49.112 | 338 | 168 | 3 | 1 | 334 | 13 | 350 | 4.30e-105 | 311 |
| MS.gene000434.t1 | MTR_3g104400 | 47.645 | 361 | 148 | 4 | 15 | 334 | 5 | 365 | 1.67e-102 | 306 |
| MS.gene000434.t1 | MTR_3g081690 | 73.009 | 226 | 53 | 2 | 98 | 315 | 14 | 239 | 2.33e-97 | 288 |
| MS.gene000434.t1 | MTR_1g016120 | 46.961 | 362 | 150 | 7 | 15 | 334 | 13 | 374 | 3.46e-94 | 285 |
| MS.gene000434.t1 | MTR_3g081690 | 77.895 | 190 | 35 | 2 | 133 | 315 | 6 | 195 | 4.75e-84 | 253 |
| MS.gene000434.t1 | MTR_3g081690 | 77.249 | 189 | 38 | 1 | 132 | 315 | 29 | 217 | 4.33e-83 | 251 |
| MS.gene000434.t1 | MTR_5g071990 | 43.202 | 331 | 159 | 8 | 11 | 334 | 10 | 318 | 1.73e-78 | 243 |
| MS.gene000434.t1 | MTR_3g081630 | 61.538 | 65 | 21 | 2 | 67 | 131 | 23 | 83 | 5.18e-17 | 77.0 |
| MS.gene000434.t1 | MTR_4g006710 | 41.758 | 91 | 52 | 1 | 18 | 108 | 21 | 110 | 1.40e-13 | 66.6 |
| MS.gene000434.t1 | MTR_2g097580 | 22.184 | 293 | 197 | 9 | 51 | 333 | 64 | 335 | 7.35e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000434.t1 | AT3G12750 | 55.942 | 345 | 135 | 4 | 1 | 334 | 17 | 355 | 3.92e-128 | 370 |
| MS.gene000434.t1 | AT1G05300 | 56.061 | 330 | 132 | 6 | 16 | 334 | 33 | 360 | 2.54e-118 | 346 |
| MS.gene000434.t1 | AT2G32270 | 53.529 | 340 | 131 | 5 | 4 | 334 | 18 | 339 | 1.98e-111 | 327 |
| MS.gene000434.t1 | AT1G31260 | 49.704 | 338 | 158 | 3 | 9 | 334 | 27 | 364 | 2.34e-107 | 318 |
| MS.gene000434.t1 | AT5G62160 | 51.297 | 347 | 151 | 7 | 1 | 334 | 14 | 355 | 5.42e-107 | 317 |
| MS.gene000434.t1 | AT4G19680 | 46.746 | 338 | 171 | 4 | 3 | 334 | 16 | 350 | 5.94e-100 | 298 |
| MS.gene000434.t1 | AT2G04032 | 47.576 | 330 | 161 | 5 | 16 | 334 | 37 | 365 | 1.33e-98 | 296 |
| MS.gene000434.t1 | AT4G19690 | 45.906 | 342 | 160 | 3 | 3 | 334 | 21 | 347 | 1.89e-96 | 290 |
| MS.gene000434.t1 | AT1G60960 | 41.310 | 397 | 169 | 7 | 2 | 334 | 19 | 415 | 1.09e-88 | 272 |
| MS.gene000434.t1 | AT1G60960 | 41.310 | 397 | 169 | 7 | 2 | 334 | 29 | 425 | 1.66e-88 | 272 |
| MS.gene000434.t1 | AT4G33020 | 41.081 | 370 | 165 | 5 | 15 | 334 | 25 | 391 | 9.95e-86 | 264 |
| MS.gene000434.t1 | AT4G33020 | 40.751 | 346 | 154 | 4 | 37 | 334 | 2 | 344 | 3.38e-79 | 245 |
| MS.gene000434.t1 | AT2G30080 | 43.077 | 325 | 171 | 6 | 23 | 334 | 18 | 341 | 1.24e-73 | 231 |
| MS.gene000434.t1 | AT1G05300 | 52.838 | 229 | 95 | 6 | 16 | 233 | 33 | 259 | 1.92e-69 | 218 |
| MS.gene000434.t1 | AT4G19680 | 44.351 | 239 | 124 | 4 | 3 | 235 | 16 | 251 | 2.03e-61 | 197 |
| MS.gene000434.t1 | AT1G10970 | 44.615 | 130 | 70 | 1 | 16 | 143 | 10 | 139 | 5.69e-31 | 120 |
| MS.gene000434.t1 | AT1G10970 | 44.615 | 130 | 70 | 1 | 16 | 143 | 10 | 139 | 5.69e-31 | 120 |
| MS.gene000434.t1 | AT1G60960 | 42.361 | 144 | 78 | 2 | 2 | 140 | 29 | 172 | 4.59e-30 | 116 |
| MS.gene000434.t1 | AT4G19690 | 36.458 | 192 | 97 | 3 | 3 | 184 | 21 | 197 | 2.70e-29 | 112 |
Find 65 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATTCACCTTGTTTAA+AGG | 0.198892 | 7.1:-68578821 | MS.gene000434:CDS |
| AGCCGGAATCTTAATTTATA+TGG | 0.200488 | 7.1:-68577355 | MS.gene000434:CDS |
| TGCAGCTACGAGTGGCTTTA+TGG | 0.249884 | 7.1:+68578381 | None:intergenic |
| GTTGTTCACTCGGTTATAAT+AGG | 0.340918 | 7.1:-68578436 | MS.gene000434:CDS |
| TGCCATATAAATTAAGATTC+CGG | 0.361053 | 7.1:+68577353 | None:intergenic |
| CCTTCAACAATAAGAGCCTT+AGG | 0.365952 | 7.1:+68577396 | None:intergenic |
| CTATCTCTTGTACTTGGAGC+TGG | 0.369757 | 7.1:-68577255 | MS.gene000434:CDS |
| AACAGTAAAAGACTCTTATT+AGG | 0.372888 | 7.1:-68577285 | MS.gene000434:CDS |
| TTGTTTAAAGGATCATCCTT+GGG | 0.389742 | 7.1:-68578809 | MS.gene000434:CDS |
| TGTGGCTATGTGCTCTGCTA+TGG | 0.396967 | 7.1:-68578764 | MS.gene000434:CDS |
| ATAGCCACAAATTCGGCTAA+TGG | 0.401100 | 7.1:+68578778 | None:intergenic |
| TGCATTCTATCTCTTGTACT+TGG | 0.416873 | 7.1:-68577261 | MS.gene000434:CDS |
| CCTAAGGCTCTTATTGTTGA+AGG | 0.416936 | 7.1:-68577396 | MS.gene000434:CDS |
| GTGGCTATGTGCTCTGCTAT+GGG | 0.421001 | 7.1:-68578763 | MS.gene000434:CDS |
| CTTCTGCGGCTGTTAGTGTT+GGG | 0.421692 | 7.1:+68579079 | None:intergenic |
| TTGACTACTCCGGTAGGGAT+TGG | 0.423041 | 7.1:-68577459 | MS.gene000434:CDS |
| GTGATGGAAAAGATGAAGAT+AGG | 0.429744 | 7.1:-68579050 | MS.gene000434:CDS |
| GGTATCACTTTGCCGAGAAA+AGG | 0.433323 | 7.1:+68578949 | None:intergenic |
| TATCTTGTAAACAAGGGCTT+TGG | 0.436160 | 7.1:+68579020 | None:intergenic |
| CCTTCTGCGGCTGTTAGTGT+TGG | 0.438219 | 7.1:+68579078 | None:intergenic |
| CTGTTAGTGTTGGGATTATG+AGG | 0.443819 | 7.1:+68579088 | None:intergenic |
| GAATGTATCTATTGCAATCA+TGG | 0.445997 | 7.1:-68577496 | MS.gene000434:CDS |
| TCATTATAGGTGCTAGAGTT+GGG | 0.460867 | 7.1:-68578463 | MS.gene000434:intron |
| AGAGCACATAGCCACAAATT+CGG | 0.461736 | 7.1:+68578771 | None:intergenic |
| TTCATTATAGGTGCTAGAGT+TGG | 0.463613 | 7.1:-68578464 | MS.gene000434:intron |
| CTTGTTTAAAGGATCATCCT+TGG | 0.464419 | 7.1:-68578810 | MS.gene000434:CDS |
| CATCAGAACTTCTTCGCCAT+AGG | 0.469470 | 7.1:-68578582 | MS.gene000434:CDS |
| TCGCCATAGGGTTATATCAC+AGG | 0.476722 | 7.1:-68578569 | MS.gene000434:intron |
| TTAAGACTCTCAGAAGCATC+CGG | 0.477614 | 7.1:+68578838 | None:intergenic |
| GTAGGGATTGGAATTGGTCT+AGG | 0.485389 | 7.1:-68577447 | MS.gene000434:CDS |
| ACTCCGGTAGGGATTGGAAT+TGG | 0.485985 | 7.1:-68577453 | MS.gene000434:CDS |
| CGGGAGCACATGAACGAAAC+CGG | 0.489796 | 7.1:+68578858 | None:intergenic |
| CTTCAACAATAAGAGCCTTA+GGG | 0.492440 | 7.1:+68577397 | None:intergenic |
| CGGTTTCGTTCATGTGCTCC+CGG | 0.492507 | 7.1:-68578857 | MS.gene000434:CDS |
| CATGGTCATGCCTCTACAGA+TGG | 0.493108 | 7.1:-68578607 | MS.gene000434:CDS |
| ATCTTCAATGCAGCTTCAGC+CGG | 0.496676 | 7.1:-68577372 | MS.gene000434:CDS |
| GTATCACTTTGCCGAGAAAA+GGG | 0.498507 | 7.1:+68578950 | None:intergenic |
| ATCAGAACTTCTTCGCCATA+GGG | 0.506488 | 7.1:-68578581 | MS.gene000434:CDS |
| GTTGGGTATCGTTGTTCACT+CGG | 0.509941 | 7.1:-68578446 | MS.gene000434:CDS |
| ATACTAGTTGCAAGTGCAAT+CGG | 0.511165 | 7.1:-68578982 | MS.gene000434:CDS |
| TTTCTTTGACTACTCCGGTA+GGG | 0.530495 | 7.1:-68577464 | MS.gene000434:CDS |
| TCCATCACATGTACCTTCTG+CGG | 0.530960 | 7.1:+68579065 | None:intergenic |
| TTACCTGTGATATAACCCTA+TGG | 0.542201 | 7.1:+68578566 | None:intergenic |
| GCCGCAGAAGGTACATGTGA+TGG | 0.544964 | 7.1:-68579066 | MS.gene000434:CDS |
| TAGGGATTGGAATTGGTCTA+GGG | 0.549857 | 7.1:-68577446 | MS.gene000434:CDS |
| AAGCTGCTATCTTGTAAACA+AGG | 0.556111 | 7.1:+68579013 | None:intergenic |
| GAGAATGATGTAGAGCATGA+AGG | 0.572834 | 7.1:-68578670 | MS.gene000434:CDS |
| AGAATGATGTAGAGCATGAA+GGG | 0.576994 | 7.1:-68578669 | MS.gene000434:CDS |
| TAAGACTCTCAGAAGCATCC+GGG | 0.590327 | 7.1:+68578839 | None:intergenic |
| GTTATAATAGGAATTTCTCT+CGG | 0.591573 | 7.1:-68578424 | MS.gene000434:CDS |
| ATGGTCATGCCTCTACAGAT+GGG | 0.598457 | 7.1:-68578606 | MS.gene000434:CDS |
| TGGCTATGTGCTCTGCTATG+GGG | 0.611534 | 7.1:-68578762 | MS.gene000434:CDS |
| CAAGGATGATCCTTTAAACA+AGG | 0.615524 | 7.1:+68578811 | None:intergenic |
| TTCTGATGACCCATCTGTAG+AGG | 0.617295 | 7.1:+68578597 | None:intergenic |
| TTATGATGAGAACAGCCCTA+AGG | 0.618758 | 7.1:-68577412 | MS.gene000434:CDS |
| GCATCACACGGTCATGCACA+TGG | 0.620271 | 7.1:-68578625 | MS.gene000434:CDS |
| AGCTGCTATCTTGTAAACAA+GGG | 0.623629 | 7.1:+68579014 | None:intergenic |
| AGACCAATTCCAATCCCTAC+CGG | 0.624986 | 7.1:+68577450 | None:intergenic |
| TGTTTAAAGGATCATCCTTG+GGG | 0.628226 | 7.1:-68578808 | MS.gene000434:CDS |
| CCAACACTAACAGCCGCAGA+AGG | 0.637499 | 7.1:-68579078 | MS.gene000434:CDS |
| AAAGTTAATGCAGCTACGAG+TGG | 0.652237 | 7.1:+68578373 | None:intergenic |
| GCTAATGGAAAATCACCCCA+AGG | 0.677334 | 7.1:+68578793 | None:intergenic |
| GTTCATACACATGCATCACA+CGG | 0.678954 | 7.1:-68578637 | MS.gene000434:CDS |
| ACTTGGATGCTGTATAACCC+AGG | 0.696884 | 7.1:-68578326 | MS.gene000434:intron |
| GAGCACATGAACGAAACCGG+TGG | 0.714369 | 7.1:+68578861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTCTTAAAAAATAATTTA+AGG | - | chr7.1:68578534-68578553 | MS.gene000434:intron | 10.0% |
| !! | GAAATAATATAAATTTGAAA+TGG | - | chr7.1:68578668-68578687 | MS.gene000434:CDS | 10.0% |
| !!! | ACAAAAAATATATATTTTTC+GGG | + | chr7.1:68577407-68577426 | None:intergenic | 10.0% |
| !!! | TATTAAATCATATTATGTTT+TGG | - | chr7.1:68578435-68578454 | MS.gene000434:CDS | 10.0% |
| !! | ACTAAAATGTGATTTAATAA+GGG | + | chr7.1:68578397-68578416 | None:intergenic | 15.0% |
| !! | TACTAAAATGTGATTTAATA+AGG | + | chr7.1:68578398-68578417 | None:intergenic | 15.0% |
| !! | TTTATAGTATATTCTTAAGA+TGG | + | chr7.1:68578632-68578651 | None:intergenic | 15.0% |
| !!! | AAGTTTTATAATTTGAACTA+TGG | - | chr7.1:68578592-68578611 | MS.gene000434:CDS | 15.0% |
| !!! | AGTATCTTATCTTTATATTT+TGG | + | chr7.1:68578264-68578283 | None:intergenic | 15.0% |
| !!! | CAAAAAATATATATTTTTCG+GGG | + | chr7.1:68577406-68577425 | None:intergenic | 15.0% |
| !!! | TTGAATTTTGATTTCATTAT+AGG | - | chr7.1:68577844-68577863 | MS.gene000434:intron | 15.0% |
| !! | AATAAGTCAGTAAACAATTT+AGG | + | chr7.1:68578773-68578792 | None:intergenic | 20.0% |
| !! | AATTTAATTACTATGTACCA+TGG | - | chr7.1:68577795-68577814 | MS.gene000434:intron | 20.0% |
| !! | ATGAATGAACTATAATTAGT+TGG | - | chr7.1:68578136-68578155 | MS.gene000434:intron | 20.0% |
| !! | TACTGAAAAGAAAACAAAAA+CGG | + | chr7.1:68578059-68578078 | None:intergenic | 20.0% |
| !! | TCAAAAACGTAATTCAAAAA+GGG | - | chr7.1:68577616-68577635 | MS.gene000434:intron | 20.0% |
| !! | TTCAAAAACGTAATTCAAAA+AGG | - | chr7.1:68577615-68577634 | MS.gene000434:intron | 20.0% |
| !!! | AAAAAGAAACTTAGCTTTAT+AGG | + | chr7.1:68578233-68578252 | None:intergenic | 20.0% |
| !!! | AACTTTGGTTTTCTTTATTA+TGG | - | chr7.1:68578168-68578187 | MS.gene000434:intron | 20.0% |
| !!! | CATTTTAGTATGTTTAGTTT+TGG | - | chr7.1:68578408-68578427 | MS.gene000434:CDS | 20.0% |
| !!! | TAAATTGTTTACTGACTTAT+TGG | - | chr7.1:68578772-68578791 | MS.gene000434:CDS | 20.0% |
| ! | AACAGTAAAAGACTCTTATT+AGG | - | chr7.1:68579035-68579054 | MS.gene000434:CDS | 25.0% |
| ! | AATTTGAACTATGGATATCA+TGG | - | chr7.1:68578601-68578620 | MS.gene000434:CDS | 25.0% |
| ! | GTTATAATAGGAATTTCTCT+CGG | - | chr7.1:68577896-68577915 | MS.gene000434:intron | 25.0% |
| ! | TATAGAAAACACATAACTTG+TGG | + | chr7.1:68578710-68578729 | None:intergenic | 25.0% |
| ! | TGCCATATAAATTAAGATTC+CGG | + | chr7.1:68578970-68578989 | None:intergenic | 25.0% |
| ! | TTGTTGAAAACTTAAAACCA+TGG | + | chr7.1:68577815-68577834 | None:intergenic | 25.0% |
| !! | ACTTTTCATCAACTTTTTGA+AGG | - | chr7.1:68577965-68577984 | MS.gene000434:intron | 25.0% |
| !! | ATAGAAAACACATAACTTGT+GGG | + | chr7.1:68578709-68578728 | None:intergenic | 25.0% |
| !! | GCATACTAAAAAGTGATTTT+TGG | + | chr7.1:68578507-68578526 | None:intergenic | 25.0% |
| !! | GTTGATCTTTTCTTGTATTA+GGG | + | chr7.1:68578751-68578770 | None:intergenic | 25.0% |
| !! | TCTTAATTCACCTTGTTTAA+AGG | - | chr7.1:68577499-68577518 | MS.gene000434:CDS | 25.0% |
| !!! | AGTTGGTATTTTTCAAACTT+TGG | - | chr7.1:68578153-68578172 | MS.gene000434:intron | 25.0% |
| !!! | GCTAAGTTTCTTTTTGTTTT+CGG | - | chr7.1:68578238-68578257 | MS.gene000434:intron | 25.0% |
| AGCCGGAATCTTAATTTATA+TGG | - | chr7.1:68578965-68578984 | MS.gene000434:CDS | 30.0% | |
| GAATGTATCTATTGCAATCA+TGG | - | chr7.1:68578824-68578843 | MS.gene000434:CDS | 30.0% | |
| TGTGATTTAATAAGGGAGTT+TGG | + | chr7.1:68578390-68578409 | None:intergenic | 30.0% | |
| TTGTTTAAAGGATCATCCTT+GGG | - | chr7.1:68577511-68577530 | MS.gene000434:intron | 30.0% | |
| ! | GGTTGATCTTTTCTTGTATT+AGG | + | chr7.1:68578752-68578771 | None:intergenic | 30.0% |
| ! | TTGATACAATTAGAGTACCT+GGG | + | chr7.1:68578014-68578033 | None:intergenic | 30.0% |
| !! | ACGTTTTTGAAAATAAGCAG+TGG | + | chr7.1:68577606-68577625 | None:intergenic | 30.0% |
| AAGCTGCTATCTTGTAAACA+AGG | + | chr7.1:68577310-68577329 | None:intergenic | 35.0% | |
| AGAATGATGTAGAGCATGAA+GGG | - | chr7.1:68577651-68577670 | MS.gene000434:intron | 35.0% | |
| AGCTGCTATCTTGTAAACAA+GGG | + | chr7.1:68577309-68577328 | None:intergenic | 35.0% | |
| ATACTAGTTGCAAGTGCAAT+CGG | - | chr7.1:68577338-68577357 | MS.gene000434:CDS | 35.0% | |
| CAAGGATGATCCTTTAAACA+AGG | + | chr7.1:68577512-68577531 | None:intergenic | 35.0% | |
| CTTCAACAATAAGAGCCTTA+GGG | + | chr7.1:68578926-68578945 | None:intergenic | 35.0% | |
| CTTGTTTAAAGGATCATCCT+TGG | - | chr7.1:68577510-68577529 | MS.gene000434:CDS | 35.0% | |
| GTTGTTCACTCGGTTATAAT+AGG | - | chr7.1:68577884-68577903 | MS.gene000434:intron | 35.0% | |
| TATCTTGTAAACAAGGGCTT+TGG | + | chr7.1:68577303-68577322 | None:intergenic | 35.0% | |
| TCATTATAGGTGCTAGAGTT+GGG | - | chr7.1:68577857-68577876 | MS.gene000434:intron | 35.0% | |
| TGCATTCTATCTCTTGTACT+TGG | - | chr7.1:68579059-68579078 | MS.gene000434:CDS | 35.0% | |
| TGTTTAAAGGATCATCCTTG+GGG | - | chr7.1:68577512-68577531 | MS.gene000434:intron | 35.0% | |
| TTACCTGTGATATAACCCTA+TGG | + | chr7.1:68577757-68577776 | None:intergenic | 35.0% | |
| TTCATTATAGGTGCTAGAGT+TGG | - | chr7.1:68577856-68577875 | MS.gene000434:intron | 35.0% | |
| TTTATGACCAATGCATTAGC+TGG | - | chr7.1:68578353-68578372 | MS.gene000434:CDS | 35.0% | |
| ! | CTTGATACAATTAGAGTACC+TGG | + | chr7.1:68578015-68578034 | None:intergenic | 35.0% |
| ! | GTGATGGAAAAGATGAAGAT+AGG | - | chr7.1:68577270-68577289 | MS.gene000434:CDS | 35.0% |
| ! | GTTATTAAAGCTTTTGCAGC+TGG | - | chr7.1:68577425-68577444 | MS.gene000434:CDS | 35.0% |
| ! | GTTCTTTTCTTTGACTACTC+CGG | - | chr7.1:68578851-68578870 | MS.gene000434:CDS | 35.0% |
| ! | TTTTCCATTAGCCGAATTTG+TGG | - | chr7.1:68577538-68577557 | MS.gene000434:intron | 35.0% |
| !! | CATCAACTTTTTGAAGGCAT+GGG | - | chr7.1:68577971-68577990 | MS.gene000434:intron | 35.0% |
| !! | TCATCAACTTTTTGAAGGCA+TGG | - | chr7.1:68577970-68577989 | MS.gene000434:intron | 35.0% |
| !!! | CATGTCTCTTTTAGCCTTAT+GGG | - | chr7.1:68579091-68579110 | MS.gene000434:CDS | 35.0% |
| !!! | TTTTGCAGCTGGTGTTATTT+TGG | - | chr7.1:68577436-68577455 | MS.gene000434:CDS | 35.0% |
| AAAGTTAATGCAGCTACGAG+TGG | + | chr7.1:68577950-68577969 | None:intergenic | 40.0% | |
| AGAGCACATAGCCACAAATT+CGG | + | chr7.1:68577552-68577571 | None:intergenic | 40.0% | |
| ATAGCCACAAATTCGGCTAA+TGG | + | chr7.1:68577545-68577564 | None:intergenic | 40.0% | |
| ATCAGAACTTCTTCGCCATA+GGG | - | chr7.1:68577739-68577758 | MS.gene000434:intron | 40.0% | |
| CCTAAGGCTCTTATTGTTGA+AGG | - | chr7.1:68578924-68578943 | MS.gene000434:CDS | 40.0% | |
| CCTTCAACAATAAGAGCCTT+AGG | + | chr7.1:68578927-68578946 | None:intergenic | 40.0% | |
| GAGAATGATGTAGAGCATGA+AGG | - | chr7.1:68577650-68577669 | MS.gene000434:intron | 40.0% | |
| GTATCACTTTGCCGAGAAAA+GGG | + | chr7.1:68577373-68577392 | None:intergenic | 40.0% | |
| GTTCATACACATGCATCACA+CGG | - | chr7.1:68577683-68577702 | MS.gene000434:intron | 40.0% | |
| TTATGATGAGAACAGCCCTA+AGG | - | chr7.1:68578908-68578927 | MS.gene000434:CDS | 40.0% | |
| TTTCGATCCAGCTAATGCAT+TGG | + | chr7.1:68578363-68578382 | None:intergenic | 40.0% | |
| TTTCTTTGACTACTCCGGTA+GGG | - | chr7.1:68578856-68578875 | MS.gene000434:CDS | 40.0% | |
| ! | CTGTTAGTGTTGGGATTATG+AGG | + | chr7.1:68577235-68577254 | None:intergenic | 40.0% |
| ! | GGTGTTTGTATCCCTTTTCT+CGG | - | chr7.1:68577359-68577378 | MS.gene000434:CDS | 40.0% |
| ! | TAGGGATTGGAATTGGTCTA+GGG | - | chr7.1:68578874-68578893 | MS.gene000434:CDS | 40.0% |
| ! | TTTTCTTTGACTACTCCGGT+AGG | - | chr7.1:68578855-68578874 | MS.gene000434:CDS | 40.0% |
| !! | TTAAGACTCTCAGAAGCATC+CGG | + | chr7.1:68577485-68577504 | None:intergenic | 40.0% |
| !!! | GCATGTCTCTTTTAGCCTTA+TGG | - | chr7.1:68579090-68579109 | MS.gene000434:CDS | 40.0% |
| !!! | TATTTTTCGGGGCTTAATGC+AGG | + | chr7.1:68577395-68577414 | None:intergenic | 40.0% |
| ACTTGGATGCTGTATAACCC+AGG | - | chr7.1:68577994-68578013 | MS.gene000434:intron | 45.0% | |
| AGACCAATTCCAATCCCTAC+CGG | + | chr7.1:68578873-68578892 | None:intergenic | 45.0% | |
| ATCTTCAATGCAGCTTCAGC+CGG | - | chr7.1:68578948-68578967 | MS.gene000434:CDS | 45.0% | |
| ATGGTCATGCCTCTACAGAT+GGG | - | chr7.1:68577714-68577733 | MS.gene000434:intron | 45.0% | |
| CATCAGAACTTCTTCGCCAT+AGG | - | chr7.1:68577738-68577757 | MS.gene000434:intron | 45.0% | |
| CTATCTCTTGTACTTGGAGC+TGG | - | chr7.1:68579065-68579084 | MS.gene000434:CDS | 45.0% | |
| GCTAATGGAAAATCACCCCA+AGG | + | chr7.1:68577530-68577549 | None:intergenic | 45.0% | |
| GGTATCACTTTGCCGAGAAA+AGG | + | chr7.1:68577374-68577393 | None:intergenic | 45.0% | |
| TCCATCACATGTACCTTCTG+CGG | + | chr7.1:68577258-68577277 | None:intergenic | 45.0% | |
| TCGCCATAGGGTTATATCAC+AGG | - | chr7.1:68577751-68577770 | MS.gene000434:intron | 45.0% | |
| TTCTGATGACCCATCTGTAG+AGG | + | chr7.1:68577726-68577745 | None:intergenic | 45.0% | |
| ! | GTAGGGATTGGAATTGGTCT+AGG | - | chr7.1:68578873-68578892 | MS.gene000434:CDS | 45.0% |
| ! | GTTGGGTATCGTTGTTCACT+CGG | - | chr7.1:68577874-68577893 | MS.gene000434:intron | 45.0% |
| ! | TGCTATGGGGACTCTTTTGA+TGG | - | chr7.1:68577571-68577590 | MS.gene000434:intron | 45.0% |
| ! | TTGGAAGTGCAATCACTTGC+AGG | - | chr7.1:68578791-68578810 | MS.gene000434:CDS | 45.0% |
| !! | CTTTTTGAAGGCATGGGACT+TGG | - | chr7.1:68577977-68577996 | MS.gene000434:intron | 45.0% |
| !! | TAAGACTCTCAGAAGCATCC+GGG | + | chr7.1:68577484-68577503 | None:intergenic | 45.0% |
| !!! | AACAAAAAATATATATTTTT+CGG | + | chr7.1:68577408-68577427 | None:intergenic | 5.0% |
| ACTCCGGTAGGGATTGGAAT+TGG | - | chr7.1:68578867-68578886 | MS.gene000434:CDS | 50.0% | |
| CATGGTCATGCCTCTACAGA+TGG | - | chr7.1:68577713-68577732 | MS.gene000434:intron | 50.0% | |
| CTTCTGCGGCTGTTAGTGTT+GGG | + | chr7.1:68577244-68577263 | None:intergenic | 50.0% | |
| GTGGCTATGTGCTCTGCTAT+GGG | - | chr7.1:68577557-68577576 | MS.gene000434:intron | 50.0% | |
| TGGCTATGTGCTCTGCTATG+GGG | - | chr7.1:68577558-68577577 | MS.gene000434:intron | 50.0% | |
| TGTGGCTATGTGCTCTGCTA+TGG | - | chr7.1:68577556-68577575 | MS.gene000434:intron | 50.0% | |
| TTGACTACTCCGGTAGGGAT+TGG | - | chr7.1:68578861-68578880 | MS.gene000434:CDS | 50.0% | |
| ! | TGCAGCTACGAGTGGCTTTA+TGG | + | chr7.1:68577942-68577961 | None:intergenic | 50.0% |
| !!! | GCTGGTGTTATTTTGGCCAC+CGG | - | chr7.1:68577443-68577462 | MS.gene000434:CDS | 50.0% |
| CCAACACTAACAGCCGCAGA+AGG | - | chr7.1:68577242-68577261 | MS.gene000434:CDS | 55.0% | |
| CCTTCTGCGGCTGTTAGTGT+TGG | + | chr7.1:68577245-68577264 | None:intergenic | 55.0% | |
| CGGTTTCGTTCATGTGCTCC+CGG | - | chr7.1:68577463-68577482 | MS.gene000434:CDS | 55.0% | |
| GAGCACATGAACGAAACCGG+TGG | + | chr7.1:68577462-68577481 | None:intergenic | 55.0% | |
| GCATCACACGGTCATGCACA+TGG | - | chr7.1:68577695-68577714 | MS.gene000434:intron | 55.0% | |
| ! | CGGGAGCACATGAACGAAAC+CGG | + | chr7.1:68577465-68577484 | None:intergenic | 55.0% |
| ! | GCCGCAGAAGGTACATGTGA+TGG | - | chr7.1:68577254-68577273 | MS.gene000434:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 68577224 | 68579118 | 68577224 | ID=MS.gene000434 |
| chr7.1 | mRNA | 68577224 | 68579118 | 68577224 | ID=MS.gene000434.t1;Parent=MS.gene000434 |
| chr7.1 | exon | 68578570 | 68579118 | 68578570 | ID=MS.gene000434.t1.exon1;Parent=MS.gene000434.t1 |
| chr7.1 | CDS | 68578570 | 68579118 | 68578570 | ID=cds.MS.gene000434.t1;Parent=MS.gene000434.t1 |
| chr7.1 | exon | 68578327 | 68578476 | 68578327 | ID=MS.gene000434.t1.exon2;Parent=MS.gene000434.t1 |
| chr7.1 | CDS | 68578327 | 68578476 | 68578327 | ID=cds.MS.gene000434.t1;Parent=MS.gene000434.t1 |
| chr7.1 | exon | 68577224 | 68577529 | 68577224 | ID=MS.gene000434.t1.exon3;Parent=MS.gene000434.t1 |
| chr7.1 | CDS | 68577224 | 68577529 | 68577224 | ID=cds.MS.gene000434.t1;Parent=MS.gene000434.t1 |
| Gene Sequence |
| Protein sequence |
