AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038972

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038972.t1 MTR_2g064310 97.765 358 8 0 1 358 1 358 0.0 712
MS.gene038972.t1 MTR_3g081640 61.732 358 121 6 11 358 10 361 2.71e-151 431
MS.gene038972.t1 MTR_3g081580 60.845 355 126 5 11 358 10 358 9.28e-146 416
MS.gene038972.t1 MTR_3g082050 59.538 346 131 4 15 358 11 349 5.27e-143 409
MS.gene038972.t1 MTR_3g082050 59.195 348 133 4 13 358 37 377 8.86e-141 404
MS.gene038972.t1 MTR_3g082050 62.813 320 113 3 41 358 57 372 2.99e-140 403
MS.gene038972.t1 MTR_3g081690 57.798 327 129 4 15 339 11 330 1.08e-127 370
MS.gene038972.t1 MTR_3g081690 61.130 301 111 3 41 339 57 353 5.17e-125 364
MS.gene038972.t1 MTR_4g083570 48.696 345 170 3 15 358 12 350 4.60e-116 340
MS.gene038972.t1 MTR_8g105030 48.169 355 155 7 11 352 9 347 1.44e-108 323
MS.gene038972.t1 MTR_6g007687 48.138 349 172 3 7 355 5 344 1.94e-106 316
MS.gene038972.t1 MTR_3g104400 44.904 363 164 4 30 358 5 365 5.28e-101 303
MS.gene038972.t1 MTR_1g016120 44.353 363 167 7 30 358 13 374 8.60e-95 287
MS.gene038972.t1 MTR_5g071990 39.583 336 177 6 28 358 4 318 2.26e-77 241
MS.gene038972.t1 MTR_3g081690 56.087 230 92 4 115 339 14 239 1.36e-76 236
MS.gene038972.t1 MTR_3g081690 66.460 161 47 1 196 356 52 205 4.57e-69 216
MS.gene038972.t1 MTR_3g081690 70.833 144 42 0 196 339 74 217 2.64e-68 214
MS.gene038972.t1 MTR_3g081630 56.164 73 30 2 84 155 23 94 9.35e-18 79.3
MS.gene038972.t1 MTR_4g006710 49.351 77 38 1 52 128 38 113 2.97e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038972.t1 AT3G12750 58.953 363 126 7 4 358 8 355 2.97e-146 417
MS.gene038972.t1 AT1G05300 54.971 342 142 4 24 358 24 360 8.37e-127 368
MS.gene038972.t1 AT2G32270 53.963 328 127 3 31 358 36 339 4.67e-119 348
MS.gene038972.t1 AT5G62160 49.861 361 171 5 2 358 1 355 1.83e-110 327
MS.gene038972.t1 AT1G31260 47.522 343 175 2 20 358 23 364 2.60e-110 327
MS.gene038972.t1 AT4G19690 44.915 354 181 2 5 358 8 347 3.25e-100 300
MS.gene038972.t1 AT2G04032 42.897 359 197 3 5 358 10 365 1.15e-97 294
MS.gene038972.t1 AT4G19680 46.341 328 170 4 31 358 29 350 1.36e-97 293
MS.gene038972.t1 AT1G10970 43.288 365 170 3 31 358 10 374 4.65e-95 288
MS.gene038972.t1 AT1G10970 43.288 365 170 3 31 358 10 374 4.65e-95 288
MS.gene038972.t1 AT1G60960 41.579 380 170 4 31 358 36 415 1.44e-90 278
MS.gene038972.t1 AT1G60960 41.579 380 170 4 31 358 46 425 1.77e-90 278
MS.gene038972.t1 AT4G33020 38.734 395 193 9 9 358 1 391 6.72e-85 262
MS.gene038972.t1 AT4G33020 41.379 348 158 8 53 358 1 344 1.71e-82 254
MS.gene038972.t1 AT1G05300 50.207 241 108 4 24 257 24 259 3.38e-74 231
MS.gene038972.t1 AT2G30080 39.710 345 188 8 28 358 3 341 1.15e-72 229
MS.gene038972.t1 AT4G19680 41.245 257 142 5 3 259 4 251 2.60e-59 192
MS.gene038972.t1 AT4G19690 40.541 148 88 0 5 152 8 155 1.07e-31 119
MS.gene038972.t1 AT1G60960 39.344 122 74 0 31 152 46 167 5.27e-26 106

Find 68 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATATTTGCTCCTATT+TGG 0.164008 2.4:-28720950 None:intergenic
CTTCGCGGCCGGTGTAATTT+TGG 0.178168 2.4:+28718217 MS.gene038972:CDS
GGCCACTAGGAGAGGCTTTA+TGG 0.212975 2.4:-28718902 None:intergenic
ATAAGAAAATAAAAGCTTTA+AGG 0.213779 2.4:-28717976 None:intergenic
GTGATTATTGGAATATCTTT+AGG 0.251826 2.4:+28718859 MS.gene038972:CDS
GCATGTCCTTGTTGGCTAAA+TGG 0.255419 2.4:+28720991 MS.gene038972:CDS
CTATATCACCTGAATTAATT+AGG 0.275569 2.4:+28718534 MS.gene038972:CDS
GTCTAGGTCCACAGCAATTA+TGG 0.281046 2.4:+28720725 MS.gene038972:CDS
CTATCCCAATTGGTGTTGTT+AGG 0.295394 2.4:-28720761 None:intergenic
TCTGCAGGAACTTGTTTAGA+AGG 0.308197 2.4:-28718416 None:intergenic
TGTGGACCTAGACTCAAATT+TGG 0.329474 2.4:-28720715 None:intergenic
TTTGAATTCACCTTGTCTTA+AGG 0.337658 2.4:+28718280 MS.gene038972:CDS
TTCTCCCTAACAACACCAAT+TGG 0.338474 2.4:+28720756 MS.gene038972:CDS
CATGTCCTTGTTGGCTAAAT+GGG 0.342112 2.4:+28720992 MS.gene038972:CDS
AACAATTTCAAGATCCAAAT+AGG 0.351306 2.4:+28720936 MS.gene038972:CDS
ATCCTCTGCCTAATTAATTC+AGG 0.353696 2.4:-28718542 None:intergenic
GTCCTTGTTTGTGGTGCTCT+TGG 0.359872 2.4:+28718119 MS.gene038972:CDS
ATTGCTTCTGTCCTTGTTTG+TGG 0.360374 2.4:+28718110 MS.gene038972:CDS
ACACCAATTGGGATAGCAAT+TGG 0.365479 2.4:+28720768 MS.gene038972:CDS
GTTCCTGCAGATGAAGAAAT+AGG 0.367792 2.4:+28718428 MS.gene038972:CDS
TTCAGGTTGCATGTCCTTGT+TGG 0.384055 2.4:+28720983 MS.gene038972:CDS
GTGGTCCATTCAGTGATTAT+TGG 0.385147 2.4:+28718847 MS.gene038972:CDS
TTTGAGGGAATGGGGCTTGG+TGG 0.391061 2.4:+28718943 MS.gene038972:CDS
GTCTTCTATAGCAACTTTGA+TGG 0.412702 2.4:+28718349 MS.gene038972:CDS
TTGAACCAAGTTTGTAATGA+AGG 0.424018 2.4:-28718088 None:intergenic
CGGAAGTATGTGAATAAAAC+CGG 0.425664 2.4:-28718243 None:intergenic
AGCTGGAATCTTGATTTACA+TGG 0.436582 2.4:+28720866 MS.gene038972:CDS
CCAACATCTCTAATTGTTGA+AGG 0.439198 2.4:+28720825 MS.gene038972:CDS
GCTTGGTGGCTGCATATCTC+AGG 0.439946 2.4:+28718957 MS.gene038972:CDS
GAAGCCCTTCATTACAAACT+TGG 0.440871 2.4:+28718083 MS.gene038972:CDS
TTCAAACTTTCAAATGCATC+CGG 0.444996 2.4:-28718263 None:intergenic
TATCCCAATTGGTGTTGTTA+GGG 0.445987 2.4:-28720760 None:intergenic
ATCCCAATTGCTATCCCAAT+TGG 0.451924 2.4:-28720771 None:intergenic
CACCAATTGGGATAGCAATT+GGG 0.462103 2.4:+28720769 MS.gene038972:CDS
CTTCAACAATTAGAGATGTT+GGG 0.470274 2.4:-28720824 None:intergenic
CCTTCAACAATTAGAGATGT+TGG 0.477232 2.4:-28720825 None:intergenic
GTGTATCAGGTATTGGAGCT+AGG 0.482364 2.4:+28718820 MS.gene038972:intron
TCACCTATTTCTTCATCTGC+AGG 0.483369 2.4:-28718431 None:intergenic
ATGATTAAAGCCTTCGCGGC+CGG 0.485121 2.4:+28718206 MS.gene038972:CDS
TGAACCAAGTTTGTAATGAA+GGG 0.486936 2.4:-28718087 None:intergenic
TCTCCCTAACAACACCAATT+GGG 0.487085 2.4:+28720757 MS.gene038972:CDS
CAAAATTACACCGGCCGCGA+AGG 0.490438 2.4:-28718216 None:intergenic
GAATCGCATGAAACAAGAGT+TGG 0.514536 2.4:-28718014 None:intergenic
GCCACACATGGTCATGCTCA+TGG 0.524602 2.4:+28718488 MS.gene038972:CDS
GGTATTGGAGCTAGGAATAG+TGG 0.526265 2.4:+28718828 MS.gene038972:intron
TTTCATGATTAAAGCCTTCG+CGG 0.533059 2.4:+28718202 MS.gene038972:CDS
AATCGCATGAAACAAGAGTT+GGG 0.534049 2.4:-28718013 None:intergenic
ATATTCCAATAATCACTGAA+TGG 0.557063 2.4:-28718852 None:intergenic
TGCAGGCCAAATTTGAGTCT+AGG 0.558044 2.4:+28720709 MS.gene038972:intron
TCATAAAATCAGCTGCAAGT+AGG 0.577409 2.4:-28720899 None:intergenic
CACCTGAATTAATTAGGCAG+AGG 0.582539 2.4:+28718540 MS.gene038972:CDS
GATGGAAAGACAAGGCCACT+AGG 0.600701 2.4:-28718915 None:intergenic
AATTGGGATAGCAATTGGGA+TGG 0.606135 2.4:+28720773 MS.gene038972:CDS
AAAGACAAGGCCACTAGGAG+AGG 0.616440 2.4:-28718910 None:intergenic
CACCAAGAGCACCACAAACA+AGG 0.617962 2.4:-28718121 None:intergenic
TGATATAGAATCTTGAGAAG+AGG 0.621265 2.4:-28718519 None:intergenic
ATAGCAACAAGTCCAGCAAG+TGG 0.627097 2.4:-28718323 None:intergenic
ATTGGGATAGCAATTGGGAT+GGG 0.627940 2.4:+28720774 MS.gene038972:CDS
GTTCATACACATGCCACACA+TGG 0.634479 2.4:+28718476 MS.gene038972:CDS
AAATGTTGCCATAATTGCTG+TGG 0.645802 2.4:-28720733 None:intergenic
ACCGGTTGCCAAAATTACAC+CGG 0.652557 2.4:-28718225 None:intergenic
GAAATAGGTGATGATCATGT+TGG 0.666063 2.4:+28718443 MS.gene038972:CDS
TACCATAAAGCCTCTCCTAG+TGG 0.667478 2.4:+28718900 MS.gene038972:CDS
TGTGAAACTGAACAAACCAA+AGG 0.668514 2.4:+28718044 MS.gene038972:CDS
GCAAGTGGAAAATCACCCCA+AGG 0.669491 2.4:-28718308 None:intergenic
TTATGCCCATTTAGCCAACA+AGG 0.682180 2.4:-28720997 None:intergenic
TCCATGAGCATGACCATGTG+TGG 0.697142 2.4:-28718489 None:intergenic
CGCATGAAACAAGAGTTGGG+AGG 0.742798 2.4:-28718010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTGGTAAAATAAAAT+TGG - chr2.4:28719129-28719148 None:intergenic 10.0%
!! GTTAAAAATATTATTACATT+CGG - chr2.4:28720230-28720249 None:intergenic 10.0%
!! AAAAAACCAATATTATATGT+CGG - chr2.4:28720311-28720330 None:intergenic 15.0%
!! AAAAATTTAAACACTCAAAT+AGG + chr2.4:28719980-28719999 MS.gene038972:intron 15.0%
!! ATAAGAAAATAAAAGCTTTA+AGG - chr2.4:28717979-28717998 None:intergenic 15.0%
!! TGAAAGTAAAAGAAATAAAT+TGG - chr2.4:28719253-28719272 None:intergenic 15.0%
!! TTGCAAAATTAAATCATATA+AGG + chr2.4:28719304-28719323 MS.gene038972:intron 15.0%
!!! AATCTAAATTCTTTTTTTAG+TGG + chr2.4:28719192-28719211 MS.gene038972:intron 15.0%
!!! ATGAAAAATATGTCATTTTT+AGG - chr2.4:28718188-28718207 None:intergenic 15.0%
!!! GTTTTTTGTAAAAAAAAATG+TGG + chr2.4:28719827-28719846 MS.gene038972:intron 15.0%
!!! TGAAAAATATGTCATTTTTA+GGG - chr2.4:28718187-28718206 None:intergenic 15.0%
!! AACCAAATTGAATATTAATC+GGG - chr2.4:28718793-28718812 None:intergenic 20.0%
!! AATAACGATTACGTAATTAT+TGG - chr2.4:28718701-28718720 None:intergenic 20.0%
!! AATTATAACATATTATGTGC+AGG + chr2.4:28720692-28720711 MS.gene038972:intron 20.0%
!! ACAATTTGGACTATAATATT+TGG - chr2.4:28719143-28719162 None:intergenic 20.0%
!! CTCAAGTAATTAATAAGTTT+CGG - chr2.4:28718730-28718749 None:intergenic 20.0%
!! GAACCAAATTGAATATTAAT+CGG - chr2.4:28718794-28718813 None:intergenic 20.0%
!! GACAATTTAAATTCAGATTT+AGG + chr2.4:28719046-28719065 MS.gene038972:intron 20.0%
!! TAATCATTTAAGTAAAGTCT+CGG - chr2.4:28720580-28720599 None:intergenic 20.0%
!! TATAGTTAAACTTCCTAAAA+TGG + chr2.4:28719352-28719371 MS.gene038972:intron 20.0%
!! TTAGATAAAAAACACTAACT+CGG + chr2.4:28720266-28720285 MS.gene038972:intron 20.0%
!!! AAAATAATGAACAAGTCTTT+TGG - chr2.4:28718753-28718772 None:intergenic 20.0%
!!! ATATCTAACTTTAGAACTAT+TGG - chr2.4:28719769-28719788 None:intergenic 20.0%
!!! ATTTTTATGGGACTAAATTA+GGG - chr2.4:28719854-28719873 None:intergenic 20.0%
!!! ATTTTTTTCACTATTTCCTT+TGG - chr2.4:28718063-28718082 None:intergenic 20.0%
!!! CAATTTACAGACATTTTTAT+GGG - chr2.4:28719866-28719885 None:intergenic 20.0%
!!! GAGTGTTTAAATTTTTGTTA+AGG - chr2.4:28719976-28719995 None:intergenic 20.0%
!!! TCAATTTACAGACATTTTTA+TGG - chr2.4:28719867-28719886 None:intergenic 20.0%
!!! TTTACAAGGTTTTAATACTT+CGG + chr2.4:28720078-28720097 MS.gene038972:intron 20.0%
! AAAAAATTGATGGAAAGACA+AGG - chr2.4:28718926-28718945 None:intergenic 25.0%
! AACAATTTCAAGATCCAAAT+AGG + chr2.4:28720936-28720955 MS.gene038972:CDS 25.0%
! AATCATTTAAGTAAAGTCTC+GGG - chr2.4:28720579-28720598 None:intergenic 25.0%
! ACTTTGCTGATAATTAATCT+CGG + chr2.4:28720473-28720492 MS.gene038972:intron 25.0%
! ATATTCCAATAATCACTGAA+TGG - chr2.4:28718855-28718874 None:intergenic 25.0%
! ATTAATTATCAGCAAAGTAG+AGG - chr2.4:28720471-28720490 None:intergenic 25.0%
! CTATATCACCTGAATTAATT+AGG + chr2.4:28718534-28718553 MS.gene038972:CDS 25.0%
! GTGATTATTGGAATATCTTT+AGG + chr2.4:28718859-28718878 MS.gene038972:CDS 25.0%
! TACCCGATTAATATTCAATT+TGG + chr2.4:28718788-28718807 MS.gene038972:intron 25.0%
! TGATTCTACATTTATTAGAG+AGG + chr2.4:28720409-28720428 MS.gene038972:intron 25.0%
! TTAATTATCAGCAAAGTAGA+GGG - chr2.4:28720470-28720489 None:intergenic 25.0%
!! ACTTGAAACTTTTCCATTTT+AGG - chr2.4:28719368-28719387 None:intergenic 25.0%
!! CATTTTTATGGGACTAAATT+AGG - chr2.4:28719855-28719874 None:intergenic 25.0%
!! GCAAATATTTCACTTCTTTT+AGG + chr2.4:28720960-28720979 MS.gene038972:CDS 25.0%
!! TTTTTATGGGACTAAATTAG+GGG - chr2.4:28719853-28719872 None:intergenic 25.0%
!!! TCTTTCCATCAATTTTTTGA+GGG + chr2.4:28718928-28718947 MS.gene038972:CDS 25.0%
!!! TGAGATATTGTCTTTTTTCT+TGG - chr2.4:28720008-28720027 None:intergenic 25.0%
AAAAAAATTAGCCATGCGAT+TGG + chr2.4:28720435-28720454 MS.gene038972:intron 30.0%
AAATTCAATACCAACCCATA+AGG - chr2.4:28719229-28719248 None:intergenic 30.0%
AATTCAATACCAACCCATAA+GGG - chr2.4:28719228-28719247 None:intergenic 30.0%
CAATAAGGCAATTGACAATT+TGG - chr2.4:28719157-28719176 None:intergenic 30.0%
CTTCAACAATTAGAGATGTT+GGG - chr2.4:28720827-28720846 None:intergenic 30.0%
GTATTGTAGATGAAAAAGTG+TGG - chr2.4:28720551-28720570 None:intergenic 30.0%
GTGAAATATTTGCTCCTATT+TGG - chr2.4:28720953-28720972 None:intergenic 30.0%
TAGAACTATTGGACTCATAT+AGG - chr2.4:28719758-28719777 None:intergenic 30.0%
TGAACCAAGTTTGTAATGAA+GGG - chr2.4:28718090-28718109 None:intergenic 30.0%
TGATATAGAATCTTGAGAAG+AGG - chr2.4:28718522-28718541 None:intergenic 30.0%
TTCAAACTTTCAAATGCATC+CGG - chr2.4:28718266-28718285 None:intergenic 30.0%
TTGAACCAAGTTTGTAATGA+AGG - chr2.4:28718091-28718110 None:intergenic 30.0%
TTGTCTTAAGGAAAAACCTT+GGG + chr2.4:28718292-28718311 MS.gene038972:CDS 30.0%
TTTGAATTCACCTTGTCTTA+AGG + chr2.4:28718280-28718299 MS.gene038972:CDS 30.0%
! AAGATTTTCTCGTGACTTTT+AGG - chr2.4:28719518-28719537 None:intergenic 30.0%
! CTATTTTGTGTATCAGGTAT+TGG + chr2.4:28718813-28718832 MS.gene038972:intron 30.0%
! GGAATTCTTTTGCTCAATAA+TGG - chr2.4:28718155-28718174 None:intergenic 30.0%
! GTTTCTAAGAGTCAATTTAC+AGG - chr2.4:28719932-28719951 None:intergenic 30.0%
! TGTGACCAAACCAAAATTTT+TGG - chr2.4:28719554-28719573 None:intergenic 30.0%
!! GATTTAATTTTGCAACAACG+AGG - chr2.4:28719299-28719318 None:intergenic 30.0%
!! GTTAATTTGTACTACTGAGT+AGG - chr2.4:28719475-28719494 None:intergenic 30.0%
!! TTCTTTTGCTCAATAATGGA+AGG - chr2.4:28718151-28718170 None:intergenic 30.0%
!! TTGAAATTGTTTTGCATCCT+TGG - chr2.4:28720927-28720946 None:intergenic 30.0%
!!! ATCAATTTTTTGAGGGAATG+GGG + chr2.4:28718935-28718954 MS.gene038972:CDS 30.0%
!!! ATTTCACTTCTTTTAGGTTC+AGG + chr2.4:28720966-28720985 MS.gene038972:CDS 30.0%
!!! CAAACCAAAATTTTTGGTCT+TGG - chr2.4:28719548-28719567 None:intergenic 30.0%
!!! CAAGACCAAAAATTTTGGTT+TGG + chr2.4:28719546-28719565 MS.gene038972:intron 30.0%
!!! CATCAATTTTTTGAGGGAAT+GGG + chr2.4:28718934-28718953 MS.gene038972:CDS 30.0%
!!! GTCTTTCCATCAATTTTTTG+AGG + chr2.4:28718927-28718946 MS.gene038972:CDS 30.0%
!!! TCATTTTTAGGGCTTAGAAT+TGG - chr2.4:28718176-28718195 None:intergenic 30.0%
!!! TTACGGAGTCTTTATTTTCA+TGG - chr2.4:28718644-28718663 None:intergenic 30.0%
!!! TTGGTTCTATTTTGTGTATC+AGG + chr2.4:28718807-28718826 MS.gene038972:intron 30.0%
AAATGTTGCCATAATTGCTG+TGG - chr2.4:28720736-28720755 None:intergenic 35.0%
AACTCGGAGTGTATTGTATA+TGG + chr2.4:28720282-28720301 MS.gene038972:intron 35.0%
AATCGCATGAAACAAGAGTT+GGG - chr2.4:28718016-28718035 None:intergenic 35.0%
AATTTGTACTACTGAGTAGG+AGG - chr2.4:28719472-28719491 None:intergenic 35.0%
ACTATTGCAGTTTGGAAAGT+AGG + chr2.4:28719417-28719436 MS.gene038972:intron 35.0%
AGCTGGAATCTTGATTTACA+TGG + chr2.4:28720866-28720885 MS.gene038972:CDS 35.0%
ATCCTCTGCCTAATTAATTC+AGG - chr2.4:28718545-28718564 None:intergenic 35.0%
CAATATTACATTAGTCCGAG+AGG - chr2.4:28720613-28720632 None:intergenic 35.0%
CCAACATCTCTAATTGTTGA+AGG + chr2.4:28720825-28720844 MS.gene038972:CDS 35.0%
CCATTCCCTCAAAAAATTGA+TGG - chr2.4:28718936-28718955 None:intergenic 35.0%
CCTTCAACAATTAGAGATGT+TGG - chr2.4:28720828-28720847 None:intergenic 35.0%
CTATGCTTTCTCACACAATA+AGG - chr2.4:28719172-28719191 None:intergenic 35.0%
CTCTCGGACTAATGTAATAT+TGG + chr2.4:28720611-28720630 MS.gene038972:intron 35.0%
CTTAAATTTCAACCGAGCTT+TGG - chr2.4:28718668-28718687 None:intergenic 35.0%
CTTGTCTTAAGGAAAAACCT+TGG + chr2.4:28718291-28718310 MS.gene038972:CDS 35.0%
GAAATAGGTGATGATCATGT+TGG + chr2.4:28718443-28718462 MS.gene038972:CDS 35.0%
GTCTTCTATAGCAACTTTGA+TGG + chr2.4:28718349-28718368 MS.gene038972:CDS 35.0%
TAAAACCTTGTAAACCGTGT+CGG - chr2.4:28720072-28720091 None:intergenic 35.0%
TCATAAAATCAGCTGCAAGT+AGG - chr2.4:28720902-28720921 None:intergenic 35.0%
TGGATGTTACTATTGCAGTT+TGG + chr2.4:28719409-28719428 MS.gene038972:intron 35.0%
TGGTGTCCGACATATAATAT+TGG + chr2.4:28720302-28720321 MS.gene038972:intron 35.0%
TGTCTTAAGGAAAAACCTTG+GGG + chr2.4:28718293-28718312 MS.gene038972:CDS 35.0%
TGTGAAACTGAACAAACCAA+AGG + chr2.4:28718044-28718063 MS.gene038972:CDS 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr2.4:28719673-28719692 MS.gene038972:intron 35.0%
TTAATCTCGGTAAGAGATCT+TGG + chr2.4:28720486-28720505 MS.gene038972:intron 35.0%
TTTAGGTCTTTCTCTCTTCA+TGG - chr2.4:28719501-28719520 None:intergenic 35.0%
TTTCATGATTAAAGCCTTCG+CGG + chr2.4:28718202-28718221 MS.gene038972:CDS 35.0%
! CAAGGTTTTTCCTTAAGACA+AGG - chr2.4:28718293-28718312 None:intergenic 35.0%
! CGGAAGTATGTGAATAAAAC+CGG - chr2.4:28718246-28718265 None:intergenic 35.0%
! GATTAGAGTTTAGTTCCTCT+CGG + chr2.4:28720595-28720614 MS.gene038972:intron 35.0%
! TCAATTCACTGGTGACTTTT+AGG - chr2.4:28719722-28719741 None:intergenic 35.0%
! TGGACCAAGACCAAAAATTT+TGG + chr2.4:28719541-28719560 MS.gene038972:intron 35.0%
!! TAACCATTGACCACTTTTAG+TGG + chr2.4:28720510-28720529 MS.gene038972:intron 35.0%
!! TATCCCAATTGGTGTTGTTA+GGG - chr2.4:28720763-28720782 None:intergenic 35.0%
!! TTTTAGGAGAAACACTTGTG+TGG - chr2.4:28719706-28719725 None:intergenic 35.0%
!!! CCATCAATTTTTTGAGGGAA+TGG + chr2.4:28718933-28718952 MS.gene038972:CDS 35.0%
!!! CGGTTTTATTCACATACTTC+CGG + chr2.4:28718244-28718263 MS.gene038972:CDS 35.0%
AAGACAGACTCCACTAAAAG+TGG - chr2.4:28720523-28720542 None:intergenic 40.0%
AATTGGGATAGCAATTGGGA+TGG + chr2.4:28720773-28720792 MS.gene038972:CDS 40.0%
ACACCAATTGGGATAGCAAT+TGG + chr2.4:28720768-28720787 MS.gene038972:CDS 40.0%
ACTCCACTAAAAGTGGTCAA+TGG - chr2.4:28720516-28720535 None:intergenic 40.0%
AGTCACGAGAAAATCTTGTG+TGG + chr2.4:28719521-28719540 MS.gene038972:intron 40.0%
ATCCCAATTGCTATCCCAAT+TGG - chr2.4:28720774-28720793 None:intergenic 40.0%
ATTGGGATAGCAATTGGGAT+GGG + chr2.4:28720774-28720793 MS.gene038972:CDS 40.0%
CAAACCAAAATTCTTGGTCC+TGG + chr2.4:28719679-28719698 MS.gene038972:intron 40.0%
CAAGAAAAGTGAGTTGCATG+TGG + chr2.4:28719389-28719408 MS.gene038972:intron 40.0%
CACCAATTGGGATAGCAATT+GGG + chr2.4:28720769-28720788 MS.gene038972:CDS 40.0%
CACCTGAATTAATTAGGCAG+AGG + chr2.4:28718540-28718559 MS.gene038972:CDS 40.0%
CATAGTCACACAATTTGAGC+AGG + chr2.4:28719010-28719029 MS.gene038972:intron 40.0%
GAACAAACAGCTCAATTCAC+TGG - chr2.4:28719733-28719752 None:intergenic 40.0%
GAAGCCCTTCATTACAAACT+TGG + chr2.4:28718083-28718102 MS.gene038972:CDS 40.0%
GAATCGCATGAAACAAGAGT+TGG - chr2.4:28718017-28718036 None:intergenic 40.0%
GTGGTCCATTCAGTGATTAT+TGG + chr2.4:28718847-28718866 MS.gene038972:CDS 40.0%
GTTCCTGCAGATGAAGAAAT+AGG + chr2.4:28718428-28718447 MS.gene038972:CDS 40.0%
TCTCCCTAACAACACCAATT+GGG + chr2.4:28720757-28720776 MS.gene038972:CDS 40.0%
TGGATATGCAAGACCCTTAT+GGG + chr2.4:28719212-28719231 MS.gene038972:intron 40.0%
TGTGGACCTAGACTCAAATT+TGG - chr2.4:28720718-28720737 None:intergenic 40.0%
TTATGCCCATTTAGCCAACA+AGG - chr2.4:28721000-28721019 None:intergenic 40.0%
TTCTCCCTAACAACACCAAT+TGG + chr2.4:28720756-28720775 MS.gene038972:CDS 40.0%
! ATTGCTTCTGTCCTTGTTTG+TGG + chr2.4:28718110-28718129 MS.gene038972:CDS 40.0%
! CATGTCCTTGTTGGCTAAAT+GGG + chr2.4:28720992-28721011 MS.gene038972:CDS 40.0%
! GTTTTCAATTCTGCTTCAGC+TGG + chr2.4:28720849-28720868 MS.gene038972:CDS 40.0%
! TCACCTATTTCTTCATCTGC+AGG - chr2.4:28718434-28718453 None:intergenic 40.0%
! TCTGCAGGAACTTGTTTAGA+AGG - chr2.4:28718419-28718438 None:intergenic 40.0%
!! CAGCTGATTTTATGAGTCCA+AGG + chr2.4:28720907-28720926 MS.gene038972:CDS 40.0%
!! CTATCCCAATTGGTGTTGTT+AGG - chr2.4:28720764-28720783 None:intergenic 40.0%
!! TTCAACCGAGCTTTGGATTA+CGG - chr2.4:28718661-28718680 None:intergenic 40.0%
!!! CAGGACCAAGAATTTTGGTT+TGG - chr2.4:28719681-28719700 None:intergenic 40.0%
ACCGGTTGCCAAAATTACAC+CGG - chr2.4:28718228-28718247 None:intergenic 45.0%
AGACTCCGTAATCCAAAGCT+CGG + chr2.4:28718653-28718672 MS.gene038972:intron 45.0%
ATAGCAACAAGTCCAGCAAG+TGG - chr2.4:28718326-28718345 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG + chr2.4:28719635-28719654 MS.gene038972:intron 45.0%
GTAGGAGGATGTCGTCATAA+TGG - chr2.4:28719457-28719476 None:intergenic 45.0%
GTCTAGGTCCACAGCAATTA+TGG + chr2.4:28720725-28720744 MS.gene038972:CDS 45.0%
GTGGATATGCAAGACCCTTA+TGG + chr2.4:28719211-28719230 MS.gene038972:intron 45.0%
GTTCATACACATGCCACACA+TGG + chr2.4:28718476-28718495 MS.gene038972:CDS 45.0%
TACCATAAAGCCTCTCCTAG+TGG + chr2.4:28718900-28718919 MS.gene038972:CDS 45.0%
TATGCAAGACCCTTATGGGT+TGG + chr2.4:28719216-28719235 MS.gene038972:intron 45.0%
TGCAGGCCAAATTTGAGTCT+AGG + chr2.4:28720709-28720728 MS.gene038972:intron 45.0%
! GCATGTCCTTGTTGGCTAAA+TGG + chr2.4:28720991-28721010 MS.gene038972:CDS 45.0%
! GGTATTGGAGCTAGGAATAG+TGG + chr2.4:28718828-28718847 MS.gene038972:intron 45.0%
! TGGACCAGGACCAAGAATTT+TGG - chr2.4:28719686-28719705 None:intergenic 45.0%
!! GTGTATCAGGTATTGGAGCT+AGG + chr2.4:28718820-28718839 MS.gene038972:intron 45.0%
!! TTCAGGTTGCATGTCCTTGT+TGG + chr2.4:28720983-28721002 MS.gene038972:CDS 45.0%
!!! TTTTTTGAGGGAATGGGGCT+TGG + chr2.4:28718940-28718959 MS.gene038972:CDS 45.0%
AAACATCCTGACAGCCGACA+CGG + chr2.4:28720055-28720074 MS.gene038972:intron 50.0%
AAAGACAAGGCCACTAGGAG+AGG - chr2.4:28718913-28718932 None:intergenic 50.0%
ATGATTAAAGCCTTCGCGGC+CGG + chr2.4:28718206-28718225 MS.gene038972:CDS 50.0%
CGCATGAAACAAGAGTTGGG+AGG - chr2.4:28718013-28718032 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr2.4:28719700-28719719 None:intergenic 50.0%
GATGGAAAGACAAGGCCACT+AGG - chr2.4:28718918-28718937 None:intergenic 50.0%
GCAAGTGGAAAATCACCCCA+AGG - chr2.4:28718311-28718330 None:intergenic 50.0%
GGTACTTCACACCAATCGCA+TGG - chr2.4:28720449-28720468 None:intergenic 50.0%
TACCAACCGAGCTTAGCTCA+CGG + chr2.4:28719904-28719923 MS.gene038972:intron 50.0%
TCCATGAGCATGACCATGTG+TGG - chr2.4:28718492-28718511 None:intergenic 50.0%
! GTCCTTGTTTGTGGTGCTCT+TGG + chr2.4:28718119-28718138 MS.gene038972:CDS 50.0%
! TGAGCTAAGCTCGGTTGGTA+AGG - chr2.4:28719904-28719923 None:intergenic 50.0%
! TGGGGTGATTTTCCACTTGC+TGG + chr2.4:28718311-28718330 MS.gene038972:CDS 50.0%
!! CACCAAGAGCACCACAAACA+AGG - chr2.4:28718124-28718143 None:intergenic 50.0%
!! GCCGGTGTAATTTTGGCAAC+CGG + chr2.4:28718224-28718243 MS.gene038972:CDS 50.0%
ACCAACCGAGCTTAGCTCAC+GGG + chr2.4:28719905-28719924 MS.gene038972:intron 55.0%
CAAAATTACACCGGCCGCGA+AGG - chr2.4:28718219-28718238 None:intergenic 55.0%
GACAGCCGACACGGTTTACA+AGG + chr2.4:28720064-28720083 MS.gene038972:intron 55.0%
GCCACACATGGTCATGCTCA+TGG + chr2.4:28718488-28718507 MS.gene038972:CDS 55.0%
GGCCACTAGGAGAGGCTTTA+TGG - chr2.4:28718905-28718924 None:intergenic 55.0%
TTTGAGGGAATGGGGCTTGG+TGG + chr2.4:28718943-28718962 MS.gene038972:CDS 55.0%
! CTTCGCGGCCGGTGTAATTT+TGG + chr2.4:28718217-28718236 MS.gene038972:CDS 55.0%
! GCTTGGTGGCTGCATATCTC+AGG + chr2.4:28718957-28718976 MS.gene038972:CDS 55.0%
!! TGTAAACCGTGTCGGCTGTC+AGG - chr2.4:28720064-28720083 None:intergenic 55.0%
CAGGTCCCGTGAGCTAAGCT+CGG - chr2.4:28719913-28719932 None:intergenic 60.0%
TCCCGTGAGCTAAGCTCGGT+TGG - chr2.4:28719909-28719928 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 28717954 28721019 28717954 ID=MS.gene038972
chr2.4 mRNA 28717954 28721019 28717954 ID=MS.gene038972.t1;Parent=MS.gene038972
chr2.4 exon 28717954 28718574 28717954 ID=MS.gene038972.t1.exon1;Parent=MS.gene038972.t1
chr2.4 CDS 28717954 28718574 28717954 ID=cds.MS.gene038972.t1;Parent=MS.gene038972.t1
chr2.4 exon 28718829 28718978 28718829 ID=MS.gene038972.t1.exon2;Parent=MS.gene038972.t1
chr2.4 CDS 28718829 28718978 28718829 ID=cds.MS.gene038972.t1;Parent=MS.gene038972.t1
chr2.4 exon 28720714 28721019 28720714 ID=MS.gene038972.t1.exon3;Parent=MS.gene038972.t1
chr2.4 CDS 28720714 28721019 28720714 ID=cds.MS.gene038972.t1;Parent=MS.gene038972.t1
Gene Sequence

>MS.gene038972

ATGATGAGTTCTCTTACTACTACCTTAAAGCTTTTATTTTCTTATGTGATTTTTGTCCTCCCAACTCTTGTTTCATGCGATTCATGCACATGTGAAACTGAACAAACCAAAGGAAATAGTGAAAAAAATGAAGCCCTTCATTACAAACTTGGTTCAATTGCTTCTGTCCTTGTTTGTGGTGCTCTTGGTGTAAGCCTTCCATTATTGAGCAAAAGAATTCCAATTCTAAGCCCTAAAAATGACATATTTTTCATGATTAAAGCCTTCGCGGCCGGTGTAATTTTGGCAACCGGTTTTATTCACATACTTCCGGATGCATTTGAAAGTTTGAATTCACCTTGTCTTAAGGAAAAACCTTGGGGTGATTTTCCACTTGCTGGACTTGTTGCTATGTTGTCTTCTATAGCAACTTTGATGGTAGATTCATTTGCATCTAGCTATTATCAAAAGAGACATTTTAATCCTTCTAAACAAGTTCCTGCAGATGAAGAAATAGGTGATGATCATGTTGGTCACATACATGTTCATACACATGCCACACATGGTCATGCTCATGGATCAGCTACCTCTTCTCAAGATTCTATATCACCTGAATTAATTAGGCAGAGGATCATATCACAAGTAAGCTCACTGAATTGTTTCTATGTGCAAAAATAGATACATGCATTTTTTTTTTTGTTTAACTCTCCATGAAAATAAAGACTCCGTAATCCAAAGCTCGGTTGAAATTTAAGTAAAGTTTAACCAATAATTACGTAATCGTTATTAATTAACCGAAACTTATTAATTACTTGAGCCAAAAGACTTGTTCATTATTTTTTTTTTTTATTTGTGTACCCGATTAATATTCAATTTGGTTCTATTTTGTGTATCAGGTATTGGAGCTAGGAATAGTGGTCCATTCAGTGATTATTGGAATATCTTTAGGAACTGCACAAAGCATTGATACCATAAAGCCTCTCCTAGTGGCCTTGTCTTTCCATCAATTTTTTGAGGGAATGGGGCTTGGTGGCTGCATATCTCAGGTATTTTAAGAGTTTCTTTTTATACATTTAACATAGTCACACAATTTGAGCAGGTAGATCAAGATCAGACAATTTAAATTCAGATTTAGGTGAATTAGATTTAAAATACAAAGTTAGAAAATGAGTTGTTTTGAAATTAATTATAGTCCAATTTTATTTTACCAAATATTATAGTCCAAATTGTCAATTGCCTTATTGTGTGAGAAAGCATAGAATCTAAATTCTTTTTTTAGTGGATATGCAAGACCCTTATGGGTTGGTATTGAATTTTCCAATTTATTTCTTTTACTTTCAACGTTTGCAACTTTGCAATTCTTCCTCGTTGTTGCAAAATTAAATCATATAAGGTATTAAGAAAGTGAAGAAATGAAGCTATAGTTAAACTTCCTAAAATGGAAAAGTTTCAAGTTCAAGAAAAGTGAGTTGCATGTGGATGTTACTATTGCAGTTTGGAAAGTAGGTTTGCAAAATGTTGCCATTATGACGACATCCTCCTACTCAGTAGTACAAATTAACACTCCATGAAGAGAGAAAGACCTAAAAGTCACGAGAAAATCTTGTGTGGACCAAGACCAAAAATTTTGGTTTGGTCACACACAAAGAGAGAAGAGAGAAGAGAGAGAAGAGAGAAGAGAGAAGAGAGAGAAAATGTAGAAGAGAGAAGAGAAGAGAGAGAAGGAGAAAATCTTGTGTGTGTGACCAAACCAAAATTCTTGGTCCTGGTCCACACAAGTGTTTCTCCTAAAAGTCACCAGTGAATTGAGCTGTTTGTTCATCCTATATGAGTCCAATAGTTCTAAAGTTAGATATAAGAATAAAATAAAAATCAAGACTAAAGACTCATTTTAGTTTTTTGTAAAAAAAAATGTGGCCCCTAATTTAGTCCCATAAAAATGTCTGTAAATTGACTCTTATGCATTGTCCTTACCAACCGAGCTTAGCTCACGGGACCTGTAAATTGACTCTTAGAAACAATCTATCATGACATATTAGTCCTTAACAAAAATTTAAACACTCAAATAGGTACCAAGAAAAAAGACAATATCTCATGATTTTATAATTGTAAATATTTTTTTAAACATCCTGACAGCCGACACGGTTTACAAGGTTTTAATACTTCGGACTTATTTACAAGTGAAAGTTATCTTTTTAGTTTCATTCATAAATGATGTATTTAGTCTACGTGAAGATTTAGATACATCATTTATTAAATAAATCTAAAAAGTAAACTTTCTCTTATAAATGAGACCGAATGTAATAATATTTTTAACAATATTTCTTTTCTTCTTAGATAAAAAACACTAACTCGGAGTGTATTGTATATGGTGTCCGACATATAATATTGGTTTTTTGTGTCAAAATAACGATTCTCATAATTAATTTTGCTAGCTTAGCTTATTTGTAATTTTCTCTACATGCTCAATTATATTTGATTCTACATTTATTAGAGAGGTTAAAAAAAATTAGCCATGCGATTGGTGTGAAGTACCCTCTACTTTGCTGATAATTAATCTCGGTAAGAGATCTTGGCTAACCATTGACCACTTTTAGTGGAGTCTGTCTTGTCAACCACACTTTTTCATCTACAATACTTAAACCCGAGACTTTACTTAAATGATTAGAGTTTAGTTCCTCTCGGACTAATGTAATATTGGTGATTAAAATCAGTATTTACTAAAAGCTAACAATAATTTGTGTATGTGTTTAGTTACTAATTATAACATATTATGTGCAGGCCAAATTTGAGTCTAGGTCCACAGCAATTATGGCAACATTTTTCTCCCTAACAACACCAATTGGGATAGCAATTGGGATGGGAGTATCAAGTGTGTACAAAGACAATAGCCCAACATCTCTAATTGTTGAAGGTGTTTTCAATTCTGCTTCAGCTGGAATCTTGATTTACATGGCACTAGTTGACCTACTTGCAGCTGATTTTATGAGTCCAAGGATGCAAAACAATTTCAAGATCCAAATAGGAGCAAATATTTCACTTCTTTTAGGTTCAGGTTGCATGTCCTTGTTGGCTAAATGGGCATAA
Protein sequence

>MS.gene038972.t1

MMSSLTTTLKLLFSYVIFVLPTLVSCDSCTCETEQTKGNSEKNEALHYKLGSIASVLVCGALGVSLPLLSKRIPILSPKNDIFFMIKAFAAGVILATGFIHILPDAFESLNSPCLKEKPWGDFPLAGLVAMLSSIATLMVDSFASSYYQKRHFNPSKQVPADEEIGDDHVGHIHVHTHATHGHAHGSATSSQDSISPELIRQRIISQVLELGIVVHSVIIGISLGTAQSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESRSTAIMATFFSLTTPIGIAIGMGVSSVYKDNSPTSLIVEGVFNSASAGILIYMALVDLLAADFMSPRMQNNFKIQIGANISLLLGSGCMSLLAKWA